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Commits on Nov 23, 2012
  1. v0.9.37

    committed Nov 23, 2012
Commits on Nov 8, 2012
  1. v0.9.36

    committed Nov 8, 2012
Commits on Nov 6, 2012
Commits on Oct 17, 2012
  1. Merge pull request #30 from sjackman/patch-1

    ld_set is static inline. Closes #29
    committed Oct 17, 2012
Commits on Oct 16, 2012
  1. @sjackman

    ld_set is static inline. Closes #29

    Fix a compiler error.
    sjackman committed Oct 16, 2012
Commits on Sep 26, 2012
Commits on Sep 25, 2012
  1. v0.9.35

    committed Sep 25, 2012
  2. Implemented an upper limit on the number of edges we allow a vertex t…

    …o have before giving up on using it in the assembly graph.
    
    This helps limit the memory usage in pathological cases, like when the genome contains a lot of satellite DNA.
    committed Sep 25, 2012
Commits on Sep 24, 2012
  1. When building the FM-index using ropebwt the lexicographic index is b…

    …uilt using openmp if the compiler supports it.
    committed Sep 24, 2012
  2. github issue 27: added --no-primer-check option to preprocess. Also, …

    …cleaned up help message.
    committed Sep 24, 2012
Commits on Sep 7, 2012
  1. Fix divide-by-zero in sga-astat

    committed Sep 7, 2012
  2. Set the --mina option to abyss

    committed Sep 7, 2012
Commits on Aug 24, 2012
  1. Whitespace changes

    committed Aug 24, 2012
Commits on Aug 23, 2012
  1. v0.9.34

    committed Aug 23, 2012
  2. Explicitly construct the .sai file when using ropebwt since you canno…

    …t get the lexicographic index from ropebwt when read lengths vary
    committed Aug 23, 2012
Commits on Aug 21, 2012
  1. v0.9.33

    committed Aug 21, 2012
  2. Cleanup code and comments

    committed Aug 21, 2012
  3. When removing transitive edges from the scaffold graph, check the ori…

    …entation of contigs in the layout
    committed Aug 21, 2012
Commits on Aug 20, 2012
  1. v0.9.32

    committed Aug 20, 2012
Commits on Aug 16, 2012
Commits on Aug 15, 2012
  1. Removed print

    committed Aug 15, 2012