Skip to content


Subversion checkout URL

You can clone with
Download ZIP
de novo sequence assembler using string graphs
C++ C Python Other
Pull request Compare This branch is 1 commit ahead, 628 commits behind master.
Fetching latest commit...
Cannot retrieve the latest commit at this time.
Failed to load latest commit information.

SGA - String Graph Assembler

SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

For installation and usage instructions see src/README

For running examples see src/examples and the sga wiki

For questions or support contact jared.simpson --at--

Something went wrong with that request. Please try again.