From ab8a01cce7af760ee11833c016bc63403d261341 Mon Sep 17 00:00:00 2001 From: Synchon Mandal Date: Fri, 19 Sep 2025 17:08:17 +0200 Subject: [PATCH 1/2] chore: disable fsl install for junifer-ci --- Dockerfile-ci | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/Dockerfile-ci b/Dockerfile-ci index b7afe57ed..d30bb9899 100644 --- a/Dockerfile-ci +++ b/Dockerfile-ci @@ -60,13 +60,14 @@ ENV PATH="/opt/afni/bin:$PATH" # Patch gsl RUN ln -s /usr/lib/x86_64-linux-gnu/libgsl.so.27 /usr/lib/x86_64-linux-gnu/libgsl.so.23 -# Add FSL -RUN curl https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fslinstaller.py | \ - python - -d /opt/fsl/ --skip_registration -# Set env vars for FSL -ENV FSLDIR=/opt/fsl \ - FSLOUTPUTTYPE=NIFTI_GZ \ - PATH="/opt/fsl/share/fsl/bin:$PATH" +# disabled as standard github runner fails to install due to insufficient space on device +# # Add FSL +# RUN curl https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fslinstaller.py | \ +# python - -d /opt/fsl/ --skip_registration +# # Set env vars for FSL +# ENV FSLDIR=/opt/fsl \ +# FSLOUTPUTTYPE=NIFTI_GZ \ +# PATH="/opt/fsl/share/fsl/bin:$PATH" # Clean apt cache RUN apt-get autoremove --purge && apt-get clean From f267849eaaeb64951ec461a042094ac516d1f4c8 Mon Sep 17 00:00:00 2001 From: Synchon Mandal Date: Fri, 19 Sep 2025 17:25:05 +0200 Subject: [PATCH 2/2] chore: add changelog 467.misc --- docs/changes/newsfragments/467.misc | 1 + 1 file changed, 1 insertion(+) create mode 100644 docs/changes/newsfragments/467.misc diff --git a/docs/changes/newsfragments/467.misc b/docs/changes/newsfragments/467.misc new file mode 100644 index 000000000..76cc05c59 --- /dev/null +++ b/docs/changes/newsfragments/467.misc @@ -0,0 +1 @@ +Disable FSL installation for `junifer-ci` Docker image build with `junifer-data` v4 by `Synchon Mandal`_