DiffSplice

• donor_boxplots_4_15: creates box plots for LIMCH1, PNRC1, TPM1, MYL6, and FYB1 for human individual 1.

• finalize_dotplots: creates dot plots for MYL6 and TPM1

• plotgel: creates pseudogel based on RT-PCR data

• frac_significant_quantile: creates plot showing how the fraction of genes called as significant changes with read depth

• upset_significant: make upset plots showing overlap between called genes for the three organisms

• Validation_TS: plot correlations of median SpliZ scores between donors and technologies

• parse_bowtie2_output: parse SAM alignments to create bowtie2 RPS24 barplots (not all data provided)

• spliz_PCA: k-means clusering based on ATP5F1C and RPS24, as well as plotting

• test_effect_size_filter: deciding on which effect size cutoff to use for cell type analysis (with plots)

• significance_tables: Create tables of genes called as 'significant' and get number called by cell type or compartment

• Biology_paper_numbers_v2: output number of cells per dataset