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A phylogenetic pipeline to infer gene histories from genome-wide data

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ORTHOSCOPE_STAR

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ORTHOSCOPE* (star) is an analysis pipelie to infer evolutionary history of a gene. By estimating orthogroups and gene trees for a complete set of protein coding genes, ORTHOSCOPE* evaluates:

  • gene duplication events on the species tree,
  • prensence/abnsence of genes in species lineages
     (including horizontal gene transfer).

The code is derived from the ORTHOSCOPE web version. ORTHOSCOPE* is designed to employ supercomputers (High Performance Computers) for genome scale analyses.


Instruction

http://www.fish-evol.org/orthoscopeStar/.

Now I don't have a user group. So, please send me an email if you have questions.
jinoueATg.ecc.u-tokyo.ac.jp

Citation

Inoue J. 2022. ORTHOSCOPE*: a phylogenetic pipeline for inferring gene histories from genome -wide data. Molecular Biology and Evolution, 39(1):msab301. Link.


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A phylogenetic pipeline to infer gene histories from genome-wide data

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