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# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
ARG BASE_CONTAINER=jupyter/scipy-notebook
FROM $BASE_CONTAINER
LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
# Set when building on Travis so that certain long-running build steps can
# be skipped to shorten build time.
ARG TEST_ONLY_BUILD
USER root
# R pre-requisites
RUN apt-get update && \
apt-get install -y --no-install-recommends \
fonts-dejavu \
gfortran \
gcc && \
rm -rf /var/lib/apt/lists/*
# Julia dependencies
# install Julia packages in /opt/julia instead of $HOME
ENV JULIA_DEPOT_PATH=/opt/julia
ENV JULIA_PKGDIR=/opt/julia
ENV JULIA_VERSION=1.2.0
RUN mkdir /opt/julia-${JULIA_VERSION} && \
cd /tmp && \
wget -q https://julialang-s3.julialang.org/bin/linux/x64/`echo ${JULIA_VERSION} | cut -d. -f 1,2`/julia-${JULIA_VERSION}-linux-x86_64.tar.gz && \
echo "926ced5dec5d726ed0d2919e849ff084a320882fb67ab048385849f9483afc47 *julia-${JULIA_VERSION}-linux-x86_64.tar.gz" | sha256sum -c - && \
tar xzf julia-${JULIA_VERSION}-linux-x86_64.tar.gz -C /opt/julia-${JULIA_VERSION} --strip-components=1 && \
rm /tmp/julia-${JULIA_VERSION}-linux-x86_64.tar.gz
RUN ln -fs /opt/julia-*/bin/julia /usr/local/bin/julia
# Show Julia where conda libraries are \
RUN mkdir /etc/julia && \
echo "push!(Libdl.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" >> /etc/julia/juliarc.jl && \
# Create JULIA_PKGDIR \
mkdir $JULIA_PKGDIR && \
chown $NB_USER $JULIA_PKGDIR && \
fix-permissions $JULIA_PKGDIR
USER $NB_UID
# R packages including IRKernel which gets installed globally.
RUN conda install --quiet --yes \
'r-base=3.6.1' \
'r-caret=6.0*' \
'r-crayon=1.3*' \
'r-devtools=2.1*' \
'r-forecast=8.7*' \
'r-hexbin=1.27*' \
'r-htmltools=0.3*' \
'r-htmlwidgets=1.3*' \
'r-irkernel=1.0*' \
'r-nycflights13=1.0*' \
'r-plyr=1.8*' \
'r-randomforest=4.6*' \
'r-rcurl=1.95*' \
'r-reshape2=1.4*' \
'r-rmarkdown=1.14*' \
'r-rsqlite=2.1*' \
'r-shiny=1.3*' \
'r-sparklyr=1.0*' \
'r-tidyverse=1.2*' \
'rpy2=2.9*' \
&& \
conda clean --all -f -y && \
fix-permissions $CONDA_DIR && \
fix-permissions /home/$NB_USER
# Add Julia packages. Only add HDF5 if this is not a test-only build since
# it takes roughly half the entire build time of all of the images on Travis
# to add this one package and often causes Travis to timeout.
#
# Install IJulia as jovyan and then move the kernelspec out
# to the system share location. Avoids problems with runtime UID change not
# taking effect properly on the .local folder in the jovyan home dir.
RUN julia -e 'import Pkg; Pkg.update()' && \
(test $TEST_ONLY_BUILD || julia -e 'import Pkg; Pkg.add("HDF5")') && \
julia -e "using Pkg; pkg\"add IJulia\"; pkg\"precompile\"" && \
# move kernelspec out of home \
mv $HOME/.local/share/jupyter/kernels/julia* $CONDA_DIR/share/jupyter/kernels/ && \
chmod -R go+rx $CONDA_DIR/share/jupyter && \
rm -rf $HOME/.local && \
fix-permissions $JULIA_PKGDIR $CONDA_DIR/share/jupyter
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