Drosophila-Genome-Nexus

The Drosophila Genome Nexus is a repository of more than 600 Drosophila melanogaster genomes from Africa, Europe, and North America. All scripts and pipeline commands used to generate these genome sequences are available here.

Name		Name	Last commit message	Last commit date
INSTRUCTIONS-ASSEMBLY		INSTRUCTIONS-ASSEMBLY
INSTRUCTIONS-FILTERING		INSTRUCTIONS-FILTERING
IndelShift.pl		IndelShift.pl
README.md		README.md
VCF_filter.pl		VCF_filter.pl
VCF_to_Seq_diploid.pl		VCF_to_Seq_diploid.pl
VCF_to_Seq_haploid.pl		VCF_to_Seq_haploid.pl
add_fasta_header.pl		add_fasta_header.pl
admixture_mask_seq.pl		admixture_mask_seq.pl
breaker.pl		breaker.pl
concatenate_ibd_outputs.pl		concatenate_ibd_outputs.pl
dataslice.pl		dataslice.pl
find_ibd_regions.cpp		find_ibd_regions.cpp
heterozygosity_to_filter.pl		heterozygosity_to_filter.pl
heterozygosity_windows.pl		heterozygosity_windows.pl
ibd_DGRPregion_filter.pl		ibd_DGRPregion_filter.pl
ibd_mask_seq.pl		ibd_mask_seq.pl
ibd_populations_filter.pl		ibd_populations_filter.pl
ibd_size_filter.pl		ibd_size_filter.pl
pseudoheterozygosity_windows.pl		pseudoheterozygosity_windows.pl
reformat_allsites_vcf.pl		reformat_allsites_vcf.pl
round1_assembly.pl		round1_assembly.pl
round2_assembly.pl		round2_assembly.pl
run_ibd.pl		run_ibd.pl

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