/Drosophila-Genome-Nexus

The Drosophila Genome Nexus is a repository of more than 600 Drosophila melanogaster genomes from Africa, Europe, and North America. All scripts and pipeline commands used to generate these genome sequences are available here.
  1. Perl 95.4%
  2. C++ 4.6%
Perl C++
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INSTRUCTIONS-ASSEMBLY
INSTRUCTIONS-FILTERING
IndelShift.pl
README.md
VCF_filter.pl
VCF_to_Seq_diploid.pl
VCF_to_Seq_haploid.pl
add_fasta_header.pl
admixture_mask_seq.pl
breaker.pl
concatenate_ibd_outputs.pl
dataslice.pl
find_ibd_regions.cpp
heterozygosity_to_filter.pl
heterozygosity_windows.pl
ibd_DGRPregion_filter.pl
ibd_mask_seq.pl
ibd_populations_filter.pl
ibd_size_filter.pl
pseudoheterozygosity_windows.pl
reformat_allsites_vcf.pl
round1_assembly.pl
round2_assembly.pl
run_ibd.pl

README.md

Drosophila-Genome-Nexus

The Drosophila Genome Nexus is a repository of more than 600 Drosophila melanogaster genomes from Africa, Europe, and North America. All scripts and pipeline commands used to generate these genome sequences are available here.