The Drosophila Genome Nexus is a repository of more than 600 Drosophila melanogaster genomes from Africa, Europe, and North America. All scripts and pipeline commands used to generate these genome sequences are available here.
Perl C++
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INSTRUCTIONS-ASSEMBLY
INSTRUCTIONS-FILTERING
IndelShift.pl
README.md
VCF_filter.pl
VCF_to_Seq_diploid.pl
VCF_to_Seq_haploid.pl
add_fasta_header.pl
admixture_mask_seq.pl
breaker.pl
concatenate_ibd_outputs.pl
dataslice.pl
find_ibd_regions.cpp
heterozygosity_to_filter.pl
heterozygosity_windows.pl
ibd_DGRPregion_filter.pl
ibd_mask_seq.pl
ibd_populations_filter.pl
ibd_size_filter.pl
pseudoheterozygosity_windows.pl
reformat_allsites_vcf.pl
round1_assembly.pl
round2_assembly.pl
run_ibd.pl

README.md

Drosophila-Genome-Nexus

The Drosophila Genome Nexus is a repository of more than 600 Drosophila melanogaster genomes from Africa, Europe, and North America. All scripts and pipeline commands used to generate these genome sequences are available here.