{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":623666704,"defaultBranch":"main","name":"GLnexus","ownerLogin":"jwimberl","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2023-04-04T20:44:29.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/94384510?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1680726299.0","currentOid":""},"activityList":{"items":[{"before":"c285493b49d71e9c8dbe2753f3f8275f9acf3b69","after":"c10399dcda1ac294a2027a7d7269bc3ff7b60044","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-06-27T14:52:36.157Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"Dockerfile bugfix","shortMessageHtmlLink":"Dockerfile bugfix"}},{"before":"26cac65073a43288e5739a2f7a8ceab441fde62b","after":"c285493b49d71e9c8dbe2753f3f8275f9acf3b69","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-06-27T14:35:41.111Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"Set targets from BED file in addition to regions,\nin order for disjoint BED regions to produce disjoint\n(and thus concat-able) bcf outputs","shortMessageHtmlLink":"Set targets from BED file in addition to regions,"}},{"before":"2b01b650b95624c0acc3d4378a6cbda652f23a14","after":"26cac65073a43288e5739a2f7a8ceab441fde62b","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-06-27T14:33:41.853Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"Set targets from BED file in addition to regions,\nin order for disjoint BED regions to produce disjoint\n(and thus concat-able) bcf outputs","shortMessageHtmlLink":"Set targets from BED file in addition to regions,"}},{"before":"226741dd0a0ce545f751afb042fcba2437fdaaca","after":"2b01b650b95624c0acc3d4378a6cbda652f23a14","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-06-27T14:32:31.375Z","pushType":"push","commitsCount":6,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"Set targets from BED file in addition to regions,\nin order for disjoint BED regions to produce disjoint\n(and thus concat-able) bcf outputs","shortMessageHtmlLink":"Set targets from BED file in addition to regions,"}},{"before":"f0b0b320b11ebd6c06911790c5101797f1b05fa0","after":"226741dd0a0ce545f751afb042fcba2437fdaaca","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-06-23T19:36:35.816Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"debug commit","shortMessageHtmlLink":"debug commit"}},{"before":"82d05dd0e924d5e08066074b0e0879d7f640fcba","after":"f0b0b320b11ebd6c06911790c5101797f1b05fa0","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-05-01T21:14:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"Revert to statically linking libhts, correcting\nthe plugin behavior by adding the `rdyanmic`\nlink flag, which in CMake is done by setting the\nENABLE_EXPORTS property for the executable.","shortMessageHtmlLink":"Revert to statically linking libhts, correcting"}},{"before":"e1bf41c1dfedcc64f7d91265bba81ab4e1c7e5f9","after":"82d05dd0e924d5e08066074b0e0879d7f640fcba","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-04-07T17:37:19.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"Correcting remaining unit tests by generating tabix\nindices for dv_100G_ALDH2 files","shortMessageHtmlLink":"Correcting remaining unit tests by generating tabix"}},{"before":"100f082bc69ba7f8823d6bb46e7f575f5d459e68","after":"e1bf41c1dfedcc64f7d91265bba81ab4e1c7e5f9","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-04-07T13:40:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"Tidying up, moving BcfReader class implementaiton\ninto BCF_utils.h and creating a separate cli argument\nfor the in memory range filtering vs the tabix-index\nbased range filtering.","shortMessageHtmlLink":"Tidying up, moving BcfReader class implementaiton"}},{"before":"cc67cbea59e46b5840d4f6df6a2e98b216389396","after":"100f082bc69ba7f8823d6bb46e7f575f5d459e68","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-04-07T02:03:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"Reverting to htslib 1.9 and dynamically linking to\nthe shared library it produces, resolving runtime\nlink errors that prevented the s3 plugin from loading.","shortMessageHtmlLink":"Reverting to htslib 1.9 and dynamically linking to"}},{"before":"07684d80ac42eb11d84f61b7f432c48d5e563d4d","after":"cc67cbea59e46b5840d4f6df6a2e98b216389396","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-04-06T21:23:03.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"Compiling htslib dependency (updated to version\n1.14) with S3 plugin support; however, link errors\nappear at runtime due possible to conflicting or\nduplicate links to libhts.a/libhts.so.3 by the main\ncli and the plugin objects","shortMessageHtmlLink":"Compiling htslib dependency (updated to version"}},{"before":null,"after":"07684d80ac42eb11d84f61b7f432c48d5e563d4d","ref":"refs/heads/feature/remote-and-indexing-support","pushedAt":"2023-04-05T20:24:59.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jwimberl","name":"Jack Wimberley","path":"/jwimberl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94384510?s=80&v=4"},"commit":{"message":"- Replacing gVCF import via bvf_open with\nequivalent logic via synced_bcf_reader.h\nheaders.\n- 0/1-based indexing agreement between\nthe BED file and bcf_sr_set_regions should\nbe double checked.\n- A check must be added to handle the case\nwhen a BED has been provided but the inputs\nare not bgzipped with index files, in which case\nthe bulk import should fall back to loading\nthe entire gVCF files.\n- Builds and passes.","shortMessageHtmlLink":"- Replacing gVCF import via bvf_open with"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADSgapeAA","startCursor":null,"endCursor":null}},"title":"Activity ยท jwimberl/GLnexus"}