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  1. comap comap Public

    A package for detecting coevolving positions in a sequence alignment, using COsubstitution MAPping.

    C++ 2 3

  2. physamp physamp Public

    Phylogenetic Sampling and Optimization of sequence alignments

    C++ 1

  3. maffilter maffilter Public

    The MafFilter genome alignment processor

    C++ 17 5

  4. coalhmm coalhmm Public

    The Coalescent Hidden Markov Model

    C++ 6 2