Permalink
Cannot retrieve contributors at this time
Fetching contributors…
Cannot retrieve contributors at this time
| language: python | |
| python: | |
| - "2.7" | |
| - "2.6" | |
| # command to install dependencies, e.g. pip install -r requirements.txt --use-mirrors | |
| python: | |
| - "2.7_with_system_site_packages" | |
| before_install: | |
| - sudo apt-get install -qq python-numpy python-scipy python-networkx python-biopython python-Levenshtein | |
| install: | |
| - wget http://sourceforge.net/projects/mummer/files/mummer/3.23/MUMmer3.23.tar.gz/download -O /tmp/mummer.tar.gz | |
| - tar -zxvf /tmp/mummer.tar.gz -C /tmp/ | |
| - make install -C /tmp/MUMmer3.23/ | |
| - wget -O /tmp/testData.zip https://www.dropbox.com/sh/slahcgv55037aiv/AAAzkaP6HILdBlH2G_xapKYHa?dl=1 | |
| - mkdir /tmp/syntheticrun | |
| - unzip /tmp/testData.zip LR.fasta reference.fasta LC.fasta -d /tmp/syntheticrun | |
| script: | |
| - python onlineTest.py |