Parser to add external gene calls and functional annotation from Prokka to Anvi'o.
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README.md python3 to readme May 18, 2017
gff_parser.py cosmetics May 18, 2017

README.md

gff_parser

Python parser to add external gene calls and functional annotation from Prokka to Anvi'o. Uses Python3 and gffutils package (https://github.com/daler/gffutils)

Annotate your genome/metagenome with Prokka. Use the script to get two files needed for exteranl gene calls and annotations for Anvi'o

gff_parser.py GFF3_file --gene_calls gene_calls.txt --annotation gene_annot.txt

This might or might not work for your files. But I hope it works for you too.