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Commits on Apr 27, 2015
  1. New example: HMM filter

    authored
Commits on Apr 16, 2015
  1. Cleanup tmb_examples

    authored
Commits on Mar 3, 2015
  1. Fix logpid script

    authored
Commits on Mar 2, 2015
  1. Squashed commit of the following:

    authored
        - Separate folder for 'tools' and new logpid script.
        - Add 'logpid' to Makefile
Commits on Feb 3, 2015
  1. Add excludes to unittest Makefile

    authored
    - Exclude by default examples that are either very long/short or have many external dependencies.
  2. @skaug
Commits on Jan 4, 2015
  1. New example: transform_parallel

    authored
Commits on Nov 27, 2014
  1. MVNORM: Use atomic matrix AD by default

    authored
    - flag added to disable atomics.
    - only one example runs slower with atomics (sdv_multi).
    - special atomic 'invpd' added to get both inverse and logdet of pd matrix.
    - include order rearranged: had to split tmbutils.cpp.
Commits on Oct 21, 2014
Commits on Sep 18, 2014
  1. Squashed commit of branch 'atomic_test'

    authored
        New 'R-functions'
        -----------------
        - pgamma, qgamma, pnorm, qnorm
        - Argument 'give_log' is deprecated for all 'p' and 'q' functions.
    
        New macro TMB_ATOMIC_VECTOR_FUNCTION
        ------------------------------------
        - Atomic incomplete gamma function
        - Atomic inverse incomplete gamma
        - Atomic matrix inverse
        - Atomic matrix multiply
        - Atomic lgamma
        - Atomic logdet
    
        Other:
        ------
        - Eliminated compiler warnings
        - OS X precompile instructions
        - New example to demonstrate qgamma (transform.cpp)
Commits on Sep 4, 2014
Commits on Aug 16, 2014
Commits on Aug 15, 2014
  1. Eliminate package warnings:

    authored
        - Temporary fix for missing documentation
        - Remove 'as.mle' usage
        - Remove dead code
        - Importance sampler cleanup
        - Importance sampler: sample confidence interval
        - Status of package check: 0 warnings + 4 notes
Commits on Aug 12, 2014
  1. @skaug
Commits on Jun 21, 2014
  1. New folder tmb_syntax

    authored
Commits on Jun 19, 2014
  1. @skaug
Commits on Jun 8, 2014
Commits on May 6, 2014
  1. longlinreg comparison

    authored
Commits on Apr 29, 2014
  1. thetalog example cleanup

    authored
Commits on Apr 4, 2014
  1. long linear regression in TMB

    Anders Nielsen authored
Commits on Mar 28, 2014
  1. sam example changes and new data macros for integer arrays

    authored
        - Added example comments
        - Rename samtmb -> sam
        - New macros DATA_IMATRIX and DATA_IARRAY, tested with sam.
Commits on Mar 21, 2014
  1. First version of SAM in TMB and SAM in ADMB to compare

    Anders Nielsen authored
Commits on Feb 25, 2014
  1. Exact match of random effect names and related changes

    authored
        - Exact match of random effect names new default
        - Old behaviour possible by new argument regexp=TRUE
        - Examples modified to new default
        - Remove mle2 dependency
        - Optimize deprecated in randomregression example
Commits on Feb 19, 2014
  1. Expected output update

    authored
        ar1_4D expected output
        socatt expected output
        orange_big expected output
        orange_big changed to non parallel
  2. Profile script changes

    authored
        collect more details
        Makefile: option to profile all examples
        New example ar1_4D
Commits on Feb 10, 2014
Commits on Feb 7, 2014
  1. @casperwberg

    Fixed socatt

    casperwberg authored
  2. New example: theta logistic

    Anders Nielsen authored
Commits on Jan 29, 2014
  1. Comparison and profiling updates

    authored
    * Workaround - use par file instead of std file to report higher admb precision
    * Consistency tmb vs admb of orange_big
    * Add args to admb runs
    * profile - make text report
Commits on Jan 28, 2014
  1. @skaug

    Changes to orange_big example

    skaug authored
Commits on Jan 27, 2014
  1. profiler

    authored
Commits on Jan 24, 2014
  1. Comparison tmb vs admb of 4 examples: mvrw sdv_multi spatial nmix

    authored
    * consistency between example parameter order
    * consistency between example names
    * fixed mvrw data difference
    * compare - more details
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