Predicting quantitative traits from genome and phenome with near perfect accuracy
Python code and IPython notebooks accompanying our paper.
train_and_test_sets.py- code for partitioning individuals into four sets, as shown in Figure 3a
BLUP.py- fitting the BLUP model
QTL_fitting.py- constructing and fitting the QTL model
LMM.py- constructing and fitting the LMM and LMM+P models
MTLMM.py- fitting the multi-trait LMM
MRF.py- fitting the mixed random forest