behaviour of the invisible option in fviz_pca()

[ginolhac]

Hello,

thanks for a very nice package, a great add-on to FactomineR.

In my own data, I have quite a lot of variables and I'd like to make a PCA-biplot where I summarized some variables. It works well, for the plotting, the ideal would be to have:

• points for individuals
• arrows for the quanti.sup only.

so I used the invisible option and it doesn't work as I expect.

see a reprex below

theme_set(theme_bw())
pca_deca <- PCA(decathlon2, scale.unit = TRUE, graph = FALSE, quanti.sup = 12, quali.sup = c(11, 13))
fviz_pca_biplot(pca_deca, invisible = "quanti.sup")
fviz_pca_biplot(pca_deca)

both give the same plots, while I would expect invisible = "quanti.sup" to remove Points

then

fviz_pca_biplot(pca_deca, invisible = "var")

I see only the quanti.sup. Shouldn't we keep the individuals and Points?
Am I misinterpreting how invisible works?

Session info -------------------
 setting  value                       
 version  R version 3.3.2 (2016-10-31)
 system   x86_64, darwin15.6.0        
 ui       RStudio (1.0.136)           
 language (EN)                        
 collate  en_US.UTF-8                 
 tz       Europe/Madrid               
 date     2017-02-06  
Packages ---------------------
 factoextra    * 1.0.4      2017-01-09 CRAN (R 3.3.2)                  
 FactoMineR    * 1.34       2016-11-17 CRAN (R 3.3.2)

[kassambara]

Thank you for reporting this bug!

Should work now!

Best,
/Alboukadel

[ginolhac]

awesome!! thanks a lot, works like a charm. Thanks again for such a quick fix.
I have some other requests, but need to figure out if it is a feature request or a bug ;)