diff --git a/kbase-extension/static/ext_packages/igv/d/.lint b/kbase-extension/static/ext_packages/igv/d/.lint
new file mode 100644
index 0000000000..cf54d81568
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/.lint
@@ -0,0 +1,11 @@
+@root
+
+module
+
+tabs
+indent 2
+maxlen 100
+
+ass
+nomen
+plusplus
diff --git a/kbase-extension/static/ext_packages/igv/d/.npmignore b/kbase-extension/static/ext_packages/igv/d/.npmignore
new file mode 100644
index 0000000000..155e41f691
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/.npmignore
@@ -0,0 +1,4 @@
+.DS_Store
+/node_modules
+/npm-debug.log
+/.lintcache
diff --git a/kbase-extension/static/ext_packages/igv/d/.travis.yml b/kbase-extension/static/ext_packages/igv/d/.travis.yml
new file mode 100644
index 0000000000..01e3b2489c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/.travis.yml
@@ -0,0 +1,15 @@
+sudo: false # http://docs.travis-ci.com/user/workers/container-based-infrastructure/
+language: node_js
+node_js:
+  - 0.12
+  - 4
+  - 5
+
+before_install:
+  - mkdir node_modules; ln -s ../ node_modules/d
+
+notifications:
+  email:
+    - medikoo+d@medikoo.com
+
+script: "npm test && npm run lint"
diff --git a/kbase-extension/static/ext_packages/igv/d/CHANGES b/kbase-extension/static/ext_packages/igv/d/CHANGES
new file mode 100644
index 0000000000..594b8ef549
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/CHANGES
@@ -0,0 +1,13 @@
+v1.0.0  --  2015.12.04
+- autoBind changes:
+  - replace `bindTo` argument with options and `resolveContext` option
+	- Add support `overwriteDefinition`
+- Introduce IE11 bug workaround in `lazy` handler
+
+v0.1.1  --  2014.04.24
+- Add `autoBind` and `lazy` utilities
+- Allow to pass other options to be merged onto created descriptor.
+  Useful when used with other custom utilties
+
+v0.1.0  --  2013.06.20
+Initial (derived from es5-ext project)
diff --git a/kbase-extension/static/ext_packages/igv/d/LICENSE b/kbase-extension/static/ext_packages/igv/d/LICENSE
new file mode 100644
index 0000000000..aaf35282f4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/LICENSE
@@ -0,0 +1,19 @@
+Copyright (C) 2013 Mariusz Nowak (www.medikoo.com)
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
diff --git a/kbase-extension/static/ext_packages/igv/d/README.md b/kbase-extension/static/ext_packages/igv/d/README.md
new file mode 100644
index 0000000000..ccdadc65f2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/README.md
@@ -0,0 +1,104 @@
+# D
+## Property descriptor factory
+
+_Originally derived from [es5-ext](https://github.com/medikoo/es5-ext) package._
+
+Defining properties with descriptors is very verbose:
+
+```javascript
+var Account = function () {};
+Object.defineProperties(Account.prototype, {
+  deposit: { value: function () {
+      /* ... */
+    }, configurable: true, enumerable: false, writable: true },
+  withdraw: { value: function () {
+      /* ... */
+    }, configurable: true, enumerable: false, writable: true },
+  balance: { get: function () {
+      /* ... */
+    }, configurable: true, enumerable: false }
+});
+```
+
+D cuts that to:
+
+```javascript
+var d = require('d');
+
+var Account = function () {};
+Object.defineProperties(Account.prototype, {
+  deposit: d(function () {
+    /* ... */
+  }),
+  withdraw: d(function () {
+    /* ... */
+  }),
+  balance: d.gs(function () {
+    /* ... */
+  })
+});
+```
+
+By default, created descriptor follow characteristics of native ES5 properties, and defines values as:
+
+```javascript
+{ configurable: true, enumerable: false, writable: true }
+```
+
+You can overwrite it by preceding _value_ argument with instruction:
+```javascript
+d('c', value); // { configurable: true, enumerable: false, writable: false }
+d('ce', value); // { configurable: true, enumerable: true, writable: false }
+d('e', value); // { configurable: false, enumerable: true, writable: false }
+
+// Same way for get/set:
+d.gs('e', value); // { configurable: false, enumerable: true }
+```
+
+### Installation
+
+	$ npm install d
+	
+To port it to Browser or any other (non CJS) environment, use your favorite CJS bundler. No favorite yet? Try: [Browserify](http://browserify.org/), [Webmake](https://github.com/medikoo/modules-webmake) or [Webpack](http://webpack.github.io/)
+
+### Other utilities
+
+#### autoBind(obj, props) _(d/auto-bind)_
+
+Define methods which will be automatically bound to its instances
+
+```javascript
+var d = require('d');
+var autoBind = require('d/auto-bind');
+
+var Foo = function () { this._count = 0; };
+Object.defineProperties(Foo.prototype, autoBind({
+  increment: d(function () { ++this._count; });
+}));
+
+var foo = new Foo();
+
+// Increment foo counter on each domEl click
+domEl.addEventListener('click', foo.increment, false);
+```
+
+#### lazy(obj, props) _(d/lazy)_
+
+Define lazy properties, which will be resolved on first access
+
+```javascript
+var d = require('d');
+var lazy = require('d/lazy');
+
+var Foo = function () {};
+Object.defineProperties(Foo.prototype, lazy({
+  items: d(function () { return []; })
+}));
+
+var foo = new Foo();
+foo.items.push(1, 2); // foo.items array created and defined directly on foo
+```
+
+## Tests [![Build Status](https://travis-ci.org/medikoo/d.png)](https://travis-ci.org/medikoo/d)
+
+	$ npm test
diff --git a/kbase-extension/static/ext_packages/igv/d/auto-bind.js b/kbase-extension/static/ext_packages/igv/d/auto-bind.js
new file mode 100644
index 0000000000..0fdac9b730
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/auto-bind.js
@@ -0,0 +1,32 @@
+'use strict';
+
+var copy             = require('es5-ext/object/copy')
+  , normalizeOptions = require('es5-ext/object/normalize-options')
+  , ensureCallable   = require('es5-ext/object/valid-callable')
+  , map              = require('es5-ext/object/map')
+  , callable         = require('es5-ext/object/valid-callable')
+  , validValue       = require('es5-ext/object/valid-value')
+
+  , bind = Function.prototype.bind, defineProperty = Object.defineProperty
+  , hasOwnProperty = Object.prototype.hasOwnProperty
+  , define;
+
+define = function (name, desc, options) {
+	var value = validValue(desc) && callable(desc.value), dgs;
+	dgs = copy(desc);
+	delete dgs.writable;
+	delete dgs.value;
+	dgs.get = function () {
+		if (!options.overwriteDefinition && hasOwnProperty.call(this, name)) return value;
+		desc.value = bind.call(value, options.resolveContext ? options.resolveContext(this) : this);
+		defineProperty(this, name, desc);
+		return this[name];
+	};
+	return dgs;
+};
+
+module.exports = function (props/*, options*/) {
+	var options = normalizeOptions(arguments[1]);
+	if (options.resolveContext != null) ensureCallable(options.resolveContext);
+	return map(props, function (desc, name) { return define(name, desc, options); });
+};
diff --git a/kbase-extension/static/ext_packages/igv/d/index.js b/kbase-extension/static/ext_packages/igv/d/index.js
new file mode 100644
index 0000000000..076ae465f6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/index.js
@@ -0,0 +1,63 @@
+'use strict';
+
+var assign        = require('es5-ext/object/assign')
+  , normalizeOpts = require('es5-ext/object/normalize-options')
+  , isCallable    = require('es5-ext/object/is-callable')
+  , contains      = require('es5-ext/string/#/contains')
+
+  , d;
+
+d = module.exports = function (dscr, value/*, options*/) {
+	var c, e, w, options, desc;
+	if ((arguments.length < 2) || (typeof dscr !== 'string')) {
+		options = value;
+		value = dscr;
+		dscr = null;
+	} else {
+		options = arguments[2];
+	}
+	if (dscr == null) {
+		c = w = true;
+		e = false;
+	} else {
+		c = contains.call(dscr, 'c');
+		e = contains.call(dscr, 'e');
+		w = contains.call(dscr, 'w');
+	}
+
+	desc = { value: value, configurable: c, enumerable: e, writable: w };
+	return !options ? desc : assign(normalizeOpts(options), desc);
+};
+
+d.gs = function (dscr, get, set/*, options*/) {
+	var c, e, options, desc;
+	if (typeof dscr !== 'string') {
+		options = set;
+		set = get;
+		get = dscr;
+		dscr = null;
+	} else {
+		options = arguments[3];
+	}
+	if (get == null) {
+		get = undefined;
+	} else if (!isCallable(get)) {
+		options = get;
+		get = set = undefined;
+	} else if (set == null) {
+		set = undefined;
+	} else if (!isCallable(set)) {
+		options = set;
+		set = undefined;
+	}
+	if (dscr == null) {
+		c = true;
+		e = false;
+	} else {
+		c = contains.call(dscr, 'c');
+		e = contains.call(dscr, 'e');
+	}
+
+	desc = { get: get, set: set, configurable: c, enumerable: e };
+	return !options ? desc : assign(normalizeOpts(options), desc);
+};
diff --git a/kbase-extension/static/ext_packages/igv/d/lazy.js b/kbase-extension/static/ext_packages/igv/d/lazy.js
new file mode 100644
index 0000000000..d75b34b779
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/lazy.js
@@ -0,0 +1,117 @@
+'use strict';
+
+var map        = require('es5-ext/object/map')
+  , isCallable = require('es5-ext/object/is-callable')
+  , validValue = require('es5-ext/object/valid-value')
+  , contains   = require('es5-ext/string/#/contains')
+
+  , call = Function.prototype.call
+  , defineProperty = Object.defineProperty
+  , getOwnPropertyDescriptor = Object.getOwnPropertyDescriptor
+  , getPrototypeOf = Object.getPrototypeOf
+  , hasOwnProperty = Object.prototype.hasOwnProperty
+  , cacheDesc = { configurable: false, enumerable: false, writable: false,
+		value: null }
+  , define;
+
+define = function (name, options) {
+	var value, dgs, cacheName, desc, writable = false, resolvable
+	  , flat;
+	options = Object(validValue(options));
+	cacheName = options.cacheName;
+	flat = options.flat;
+	if (cacheName == null) cacheName = name;
+	delete options.cacheName;
+	value = options.value;
+	resolvable = isCallable(value);
+	delete options.value;
+	dgs = { configurable: Boolean(options.configurable),
+		enumerable: Boolean(options.enumerable) };
+	if (name !== cacheName) {
+		dgs.get = function () {
+			if (hasOwnProperty.call(this, cacheName)) return this[cacheName];
+			cacheDesc.value = resolvable ? call.call(value, this, options) : value;
+			cacheDesc.writable = writable;
+			defineProperty(this, cacheName, cacheDesc);
+			cacheDesc.value = null;
+			if (desc) defineProperty(this, name, desc);
+			return this[cacheName];
+		};
+	} else if (!flat) {
+		dgs.get = function self() {
+			var ownDesc;
+			if (hasOwnProperty.call(this, name)) {
+				ownDesc = getOwnPropertyDescriptor(this, name);
+				// It happens in Safari, that getter is still called after property
+				// was defined with a value, following workarounds that
+				// While in IE11 it may happen that here ownDesc is undefined (go figure)
+				if (ownDesc) {
+					if (ownDesc.hasOwnProperty('value')) return ownDesc.value;
+					if ((typeof ownDesc.get === 'function') && (ownDesc.get !== self)) {
+						return ownDesc.get.call(this);
+					}
+					return value;
+				}
+			}
+			desc.value = resolvable ? call.call(value, this, options) : value;
+			defineProperty(this, name, desc);
+			desc.value = null;
+			return this[name];
+		};
+	} else {
+		dgs.get = function self() {
+			var base = this, ownDesc;
+			if (hasOwnProperty.call(this, name)) {
+				// It happens in Safari, that getter is still called after property
+				// was defined with a value, following workarounds that
+				ownDesc = getOwnPropertyDescriptor(this, name);
+				if (ownDesc.hasOwnProperty('value')) return ownDesc.value;
+				if ((typeof ownDesc.get === 'function') && (ownDesc.get !== self)) {
+					return ownDesc.get.call(this);
+				}
+			}
+			while (!hasOwnProperty.call(base, name)) base = getPrototypeOf(base);
+			desc.value = resolvable ? call.call(value, base, options) : value;
+			defineProperty(base, name, desc);
+			desc.value = null;
+			return base[name];
+		};
+	}
+	dgs.set = function (value) {
+		if (hasOwnProperty.call(this, name)) {
+			throw new TypeError("Cannot assign to lazy defined '" + name + "' property of " + this);
+		}
+		dgs.get.call(this);
+		this[cacheName] = value;
+	};
+	if (options.desc) {
+		desc = {
+			configurable: contains.call(options.desc, 'c'),
+			enumerable: contains.call(options.desc, 'e')
+		};
+		if (cacheName === name) {
+			desc.writable = contains.call(options.desc, 'w');
+			desc.value = null;
+		} else {
+			writable = contains.call(options.desc, 'w');
+			desc.get = dgs.get;
+			desc.set = dgs.set;
+		}
+		delete options.desc;
+	} else if (cacheName === name) {
+		desc = {
+			configurable: Boolean(options.configurable),
+			enumerable: Boolean(options.enumerable),
+			writable: Boolean(options.writable),
+			value: null
+		};
+	}
+	delete options.configurable;
+	delete options.enumerable;
+	delete options.writable;
+	return dgs;
+};
+
+module.exports = function (props) {
+	return map(props, function (desc, name) { return define(name, desc); });
+};
diff --git a/kbase-extension/static/ext_packages/igv/d/package.json b/kbase-extension/static/ext_packages/igv/d/package.json
new file mode 100644
index 0000000000..fdfaa2d7bf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/package.json
@@ -0,0 +1,73 @@
+{
+  "_args": [
+    [
+      "d@1.0.0",
+      "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components"
+    ]
+  ],
+  "_from": "d@1.0.0",
+  "_id": "d@1.0.0",
+  "_inBundle": false,
+  "_integrity": "sha1-dUu1v+VUUdpppYuU1F9MWwRi1Y8=",
+  "_location": "/d",
+  "_phantomChildren": {},
+  "_requested": {
+    "type": "version",
+    "registry": true,
+    "raw": "d@1.0.0",
+    "name": "d",
+    "escapedName": "d",
+    "rawSpec": "1.0.0",
+    "saveSpec": null,
+    "fetchSpec": "1.0.0"
+  },
+  "_requiredBy": [
+    "/es6-iterator",
+    "/es6-set",
+    "/es6-symbol",
+    "/event-emitter"
+  ],
+  "_resolved": "https://registry.npmjs.org/d/-/d-1.0.0.tgz",
+  "_spec": "1.0.0",
+  "_where": "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components",
+  "author": {
+    "name": "Mariusz Nowak",
+    "email": "medyk@medikoo.com",
+    "url": "http://www.medikoo.com/"
+  },
+  "bugs": {
+    "url": "https://github.com/medikoo/d/issues"
+  },
+  "dependencies": {
+    "es5-ext": "^0.10.9"
+  },
+  "description": "Property descriptor factory",
+  "devDependencies": {
+    "tad": "^0.2.4",
+    "xlint": "^0.2.2",
+    "xlint-jslint-medikoo": "^0.1.4"
+  },
+  "homepage": "https://github.com/medikoo/d#readme",
+  "keywords": [
+    "descriptor",
+    "es",
+    "ecmascript",
+    "ecma",
+    "property",
+    "descriptors",
+    "meta",
+    "properties"
+  ],
+  "license": "MIT",
+  "name": "d",
+  "repository": {
+    "type": "git",
+    "url": "git://github.com/medikoo/d.git"
+  },
+  "scripts": {
+    "lint": "node node_modules/xlint/bin/xlint --linter=node_modules/xlint-jslint-medikoo/index.js --no-cache --no-stream",
+    "lint-console": "node node_modules/xlint/bin/xlint --linter=node_modules/xlint-jslint-medikoo/index.js --watch",
+    "test": "node node_modules/tad/bin/tad"
+  },
+  "version": "1.0.0"
+}
diff --git a/kbase-extension/static/ext_packages/igv/d/test/auto-bind.js b/kbase-extension/static/ext_packages/igv/d/test/auto-bind.js
new file mode 100644
index 0000000000..89edfb88bb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/test/auto-bind.js
@@ -0,0 +1,12 @@
+'use strict';
+
+var d = require('../');
+
+module.exports = function (t, a) {
+	var o = Object.defineProperties({}, t({
+		bar: d(function () { return this === o; }),
+		bar2: d(function () { return this; })
+	}));
+
+	a.deep([(o.bar)(), (o.bar2)()], [true, o]);
+};
diff --git a/kbase-extension/static/ext_packages/igv/d/test/index.js b/kbase-extension/static/ext_packages/igv/d/test/index.js
new file mode 100644
index 0000000000..3db0af10ac
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/test/index.js
@@ -0,0 +1,182 @@
+'use strict';
+
+var getOwnPropertyDescriptor = Object.getOwnPropertyDescriptor;
+
+module.exports = function (t, a) {
+	var o, c, cg, cs, ce, ceg, ces, cew, cw, e, eg, es, ew, v, vg, vs, w, df, dfg
+	  , dfs;
+
+	o = Object.create(Object.prototype, {
+		c: t('c', c = {}),
+		cgs: t.gs('c', cg = function () {}, cs = function () {}),
+		ce: t('ce', ce = {}),
+		cegs: t.gs('ce', ceg = function () {}, ces = function () {}),
+		cew: t('cew', cew = {}),
+		cw: t('cw', cw = {}),
+		e: t('e', e = {}),
+		egs: t.gs('e', eg = function () {}, es = function () {}),
+		ew: t('ew', ew = {}),
+		v: t('', v = {}),
+		vgs: t.gs('', vg = function () {}, vs = function () {}),
+		w: t('w', w = {}),
+
+		df: t(df = {}),
+		dfgs: t.gs(dfg = function () {}, dfs = function () {})
+	});
+
+	return {
+		c: function (a) {
+			var d = getOwnPropertyDescriptor(o, 'c');
+			a(d.value, c, "Value");
+			a(d.get, undefined, "Get");
+			a(d.set, undefined, "Set");
+			a(d.configurable, true, "Configurable");
+			a(d.enumerable, false, "Enumerable");
+			a(d.writable, false, "Writable");
+
+			d = getOwnPropertyDescriptor(o, 'cgs');
+			a(d.value, undefined, "GS Value");
+			a(d.get, cg, "GS Get");
+			a(d.set, cs, "GS Set");
+			a(d.configurable, true, "GS Configurable");
+			a(d.enumerable, false, "GS Enumerable");
+			a(d.writable, undefined, "GS Writable");
+		},
+		ce: function (a) {
+			var d = getOwnPropertyDescriptor(o, 'ce');
+			a(d.value, ce, "Value");
+			a(d.get, undefined, "Get");
+			a(d.set, undefined, "Set");
+			a(d.configurable, true, "Configurable");
+			a(d.enumerable, true, "Enumerable");
+			a(d.writable, false, "Writable");
+
+			d = getOwnPropertyDescriptor(o, 'cegs');
+			a(d.value, undefined, "GS Value");
+			a(d.get, ceg, "GS Get");
+			a(d.set, ces, "GS Set");
+			a(d.configurable, true, "GS Configurable");
+			a(d.enumerable, true, "GS Enumerable");
+			a(d.writable, undefined, "GS Writable");
+		},
+		cew: function (a) {
+			var d = getOwnPropertyDescriptor(o, 'cew');
+			a(d.value, cew, "Value");
+			a(d.get, undefined, "Get");
+			a(d.set, undefined, "Set");
+			a(d.configurable, true, "Configurable");
+			a(d.enumerable, true, "Enumerable");
+			a(d.writable, true, "Writable");
+		},
+		cw: function (a) {
+			var d = getOwnPropertyDescriptor(o, 'cw');
+			a(d.value, cw, "Value");
+			a(d.get, undefined, "Get");
+			a(d.set, undefined, "Set");
+			a(d.configurable, true, "Configurable");
+			a(d.enumerable, false, "Enumerable");
+			a(d.writable, true, "Writable");
+		},
+		e: function (a) {
+			var d = getOwnPropertyDescriptor(o, 'e');
+			a(d.value, e, "Value");
+			a(d.get, undefined, "Get");
+			a(d.set, undefined, "Set");
+			a(d.configurable, false, "Configurable");
+			a(d.enumerable, true, "Enumerable");
+			a(d.writable, false, "Writable");
+
+			d = getOwnPropertyDescriptor(o, 'egs');
+			a(d.value, undefined, "GS Value");
+			a(d.get, eg, "GS Get");
+			a(d.set, es, "GS Set");
+			a(d.configurable, false, "GS Configurable");
+			a(d.enumerable, true, "GS Enumerable");
+			a(d.writable, undefined, "GS Writable");
+		},
+		ew: function (a) {
+			var d = getOwnPropertyDescriptor(o, 'ew');
+			a(d.value, ew, "Value");
+			a(d.get, undefined, "Get");
+			a(d.set, undefined, "Set");
+			a(d.configurable, false, "Configurable");
+			a(d.enumerable, true, "Enumerable");
+			a(d.writable, true, "Writable");
+		},
+		v: function (a) {
+			var d = getOwnPropertyDescriptor(o, 'v');
+			a(d.value, v, "Value");
+			a(d.get, undefined, "Get");
+			a(d.set, undefined, "Set");
+			a(d.configurable, false, "Configurable");
+			a(d.enumerable, false, "Enumerable");
+			a(d.writable, false, "Writable");
+
+			d = getOwnPropertyDescriptor(o, 'vgs');
+			a(d.value, undefined, "GS Value");
+			a(d.get, vg, "GS Get");
+			a(d.set, vs, "GS Set");
+			a(d.configurable, false, "GS Configurable");
+			a(d.enumerable, false, "GS Enumerable");
+			a(d.writable, undefined, "GS Writable");
+		},
+		w: function (a) {
+			var d = getOwnPropertyDescriptor(o, 'w');
+			a(d.value, w, "Value");
+			a(d.get, undefined, "Get");
+			a(d.set, undefined, "Set");
+			a(d.configurable, false, "Configurable");
+			a(d.enumerable, false, "Enumerable");
+			a(d.writable, true, "Writable");
+		},
+		d: function (a) {
+			var d = getOwnPropertyDescriptor(o, 'df');
+			a(d.value, df, "Value");
+			a(d.get, undefined, "Get");
+			a(d.set, undefined, "Set");
+			a(d.configurable, true, "Configurable");
+			a(d.enumerable, false, "Enumerable");
+			a(d.writable, true, "Writable");
+
+			d = getOwnPropertyDescriptor(o, 'dfgs');
+			a(d.value, undefined, "GS Value");
+			a(d.get, dfg, "GS Get");
+			a(d.set, dfs, "GS Set");
+			a(d.configurable, true, "GS Configurable");
+			a(d.enumerable, false, "GS Enumerable");
+			a(d.writable, undefined, "GS Writable");
+		},
+		Options: {
+			v: function (a) {
+				var x = {}, d = t(x, { foo: true });
+				a.deep(d, { configurable: true, enumerable: false, writable: true,
+					value: x, foo: true }, "No descriptor");
+				d = t('c', 'foo', { marko: 'elo' });
+				a.deep(d, { configurable: true, enumerable: false, writable: false,
+					value: 'foo', marko: 'elo' }, "Descriptor");
+			},
+			gs: function (a) {
+				var gFn = function () {}, sFn = function () {}, d;
+				d = t.gs(gFn, sFn, { foo: true });
+				a.deep(d, { configurable: true, enumerable: false, get: gFn, set: sFn,
+					foo: true }, "No descriptor");
+				d = t.gs(null, sFn, { foo: true });
+				a.deep(d, { configurable: true, enumerable: false, get: undefined,
+					set: sFn, foo: true }, "No descriptor: Just set");
+				d = t.gs(gFn, { foo: true });
+				a.deep(d, { configurable: true, enumerable: false, get: gFn,
+					set: undefined, foo: true }, "No descriptor: Just get");
+
+				d = t.gs('e', gFn, sFn, { bar: true });
+				a.deep(d, { configurable: false, enumerable: true, get: gFn, set: sFn,
+					bar: true }, "Descriptor");
+				d = t.gs('e', null, sFn, { bar: true });
+				a.deep(d, { configurable: false, enumerable: true, get: undefined,
+					set: sFn, bar: true }, "Descriptor: Just set");
+				d = t.gs('e', gFn, { bar: true });
+				a.deep(d, { configurable: false, enumerable: true, get: gFn,
+					set: undefined, bar: true }, "Descriptor: Just get");
+			}
+		}
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/d/test/lazy.js b/kbase-extension/static/ext_packages/igv/d/test/lazy.js
new file mode 100644
index 0000000000..e4023faf30
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/d/test/lazy.js
@@ -0,0 +1,82 @@
+'use strict';
+
+var d = require('../')
+
+  , getOwnPropertyDescriptor = Object.getOwnPropertyDescriptor;
+
+module.exports = function (t, a) {
+	var Foo = function () {}, i = 1, o, o2, desc;
+	Object.defineProperties(Foo.prototype, t({
+		bar: d(function () { return ++i; }),
+		bar2: d(function () { return this.bar + 23; }),
+		bar3: d(function () { return this.bar2 + 34; }, { desc: 'ew' }),
+		bar4: d(function () { return this.bar3 + 12; }, { cacheName: '_bar4_' }),
+		bar5: d(function () { return this.bar4 + 3; },
+			{ cacheName: '_bar5_', desc: 'e' })
+	}));
+
+	desc = getOwnPropertyDescriptor(Foo.prototype, 'bar');
+	a(desc.configurable, true, "Configurable: default");
+	a(desc.enumerable, false, "Enumerable: default");
+
+	o = new Foo();
+	a.deep([o.bar, o.bar2, o.bar3, o.bar4, o.bar5], [2, 25, 59, 71, 74],
+		"Values");
+
+	a.deep(getOwnPropertyDescriptor(o, 'bar3'), { configurable: false,
+		enumerable: true, writable: true, value: 59 }, "Desc");
+	a(o.hasOwnProperty('bar4'), false, "Cache not exposed");
+	desc = getOwnPropertyDescriptor(o, 'bar5');
+	a.deep(desc, { configurable: false,
+		enumerable: true, get: desc.get, set: desc.set }, "Cache & Desc: desc");
+
+	o2 = Object.create(o);
+	o2.bar = 30;
+	o2.bar3 = 100;
+
+	a.deep([o2.bar, o2.bar2, o2.bar3, o2.bar4, o2.bar5], [30, 25, 100, 112, 115],
+		"Extension Values");
+
+	Foo = function () {};
+	Object.defineProperties(Foo.prototype, t({
+		test: d('w', function () { return 'raz'; }),
+		test2: d('', function () { return 'raz'; }, { desc: 'w' }),
+		test3: d('', function () { return 'raz'; },
+			{ cacheName: '__test3__', desc: 'w' }),
+		test4: d('w', 'bar')
+	}));
+
+	o = new Foo();
+	o.test = 'marko';
+	a.deep(getOwnPropertyDescriptor(o, 'test'),
+		{ configurable: false, enumerable: false, writable: true, value: 'marko' },
+		"Set before get");
+	o.test2 = 'marko2';
+	a.deep(getOwnPropertyDescriptor(o, 'test2'),
+		{ configurable: false, enumerable: false, writable: true, value: 'marko2' },
+		"Set before get: Custom desc");
+	o.test3 = 'marko3';
+	a.deep(getOwnPropertyDescriptor(o, '__test3__'),
+		{ configurable: false, enumerable: false, writable: true, value: 'marko3' },
+		"Set before get: Custom cache name");
+	a(o.test4, 'bar', "Resolve by value");
+
+	a.h1("Flat");
+	Object.defineProperties(Foo.prototype, t({
+		flat: d(function () { return 'foo'; }, { flat: true }),
+		flat2: d(function () { return 'bar'; }, { flat: true })
+	}));
+
+	a.h2("Instance");
+	a(o.flat, 'foo', "Value");
+	a(o.hasOwnProperty('flat'), false, "Instance");
+	a(Foo.prototype.flat, 'foo', "Prototype");
+
+	a.h2("Direct");
+	a(Foo.prototype.flat2, 'bar');
+
+	a.h2("Reset direct");
+	Object.defineProperties(Foo.prototype, t({ testResetDirect: d(false) }));
+
+	a.throws(function () { Foo.prototype.testResetDirect = false; }, TypeError);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/.editorconfig b/kbase-extension/static/ext_packages/igv/es5-ext/.editorconfig
new file mode 100644
index 0000000000..c24a6cd1f4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/.editorconfig
@@ -0,0 +1,14 @@
+# EditorConfig is awesome: http://EditorConfig.org
+
+# top-most EditorConfig file
+root = true
+
+# Unix-style newlines with a newline ending every file
+[*]
+end_of_line = lf
+insert_final_newline = true
+indent_style = tab
+
+[{*.json,*.yml}]
+indent_style = space
+indent_size = 2
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/CHANGELOG.md b/kbase-extension/static/ext_packages/igv/es5-ext/CHANGELOG.md
new file mode 100644
index 0000000000..c47fffeca3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/CHANGELOG.md
@@ -0,0 +1,299 @@
+# Change Log
+
+All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines.
+
+<a name="0.10.42"></a>
+## [0.10.42](https://github.com/medikoo/es5-ext/compare/v0.10.41...v0.10.42) (2018-03-28)
+
+
+### Bug Fixes
+
+* Date.isDate to exclude NaN dates ([3b61bc6](https://github.com/medikoo/es5-ext/commit/3b61bc6))
+
+
+### Features
+
+* improve non-coercible string representation ([20bfb78](https://github.com/medikoo/es5-ext/commit/20bfb78))
+* improve non-stringifiable string representation ([2e4512d](https://github.com/medikoo/es5-ext/commit/2e4512d))
+
+
+
+<a name="0.10.41"></a>
+## [0.10.41](https://github.com/medikoo/es5-ext/compare/v0.10.40...v0.10.41) (2018-03-16)
+
+
+### Features
+
+* Add function.microtaskDelay method ([66481c0](https://github.com/medikoo/es5-ext/commit/66481c0))
+* Add Object.isThenable ([8d5a45c](https://github.com/medikoo/es5-ext/commit/8d5a45c))
+* Add promise.asCallback method ([dcc1451](https://github.com/medikoo/es5-ext/commit/dcc1451))
+* Object.ensurePlainFunction ([2682be6](https://github.com/medikoo/es5-ext/commit/2682be6))
+
+
+
+<a name="0.10.40"></a>
+## [0.10.40](https://github.com/medikoo/es5-ext/compare/v0.10.39...v0.10.40) (2018-03-09)
+
+
+### Features
+
+* **math:** decimal round, floor and ceil ([39290c6](https://github.com/medikoo/es5-ext/commit/39290c6))
+* **object:** isInteger and ensureInteger ([a5f7d04](https://github.com/medikoo/es5-ext/commit/a5f7d04))
+
+
+
+<a name="0.10.39"></a>
+## [0.10.39](https://github.com/medikoo/es5-ext/compare/v0.10.38...v0.10.39) (2018-02-16)
+
+
+### Features
+
+* Promise.lazy ([7a30a78](https://github.com/medikoo/es5-ext/commit/7a30a78))
+
+
+
+<a name="0.10.38"></a>
+## [0.10.38](https://github.com/medikoo/es5-ext/compare/v0.10.37...v0.10.38) (2018-01-16)
+
+
+### Features
+
+* Object.isNaturalNumber an Object.isNaturalNumberValue ([66a40af](https://github.com/medikoo/es5-ext/commit/66a40af))
+
+
+
+<a name="0.10.37"></a>
+## [0.10.37](https://github.com/medikoo/es5-ext/compare/v0.10.36...v0.10.37) (2017-11-23)
+
+
+### Features
+
+* String.random util ([7c28739](https://github.com/medikoo/es5-ext/commit/7c28739))
+
+
+
+<a name="0.10.36"></a>
+## [0.10.36](https://github.com/medikoo/es5-ext/compare/v0.10.35...v0.10.36) (2017-11-23)
+
+
+### Features
+
+* **date:** isTimeValue and ensureTimeValue utils ([7659dc5](https://github.com/medikoo/es5-ext/commit/7659dc5))
+
+
+
+<a name="0.10.35"></a>
+## [0.10.35](https://github.com/medikoo/es5-ext/compare/v0.10.34...v0.10.35) (2017-10-13)
+
+
+### Bug Fixes
+
+* **Object.copy:** do not upgrade primitives to objects ([dd4d88f](https://github.com/medikoo/es5-ext/commit/dd4d88f))
+
+
+
+<a name="0.10.34"></a>
+## [0.10.34](https://github.com/medikoo/es5-ext/compare/v0.10.33...v0.10.34) (2017-10-13)
+
+
+### Features
+
+* **copyDeep:** duplicate only recursive instances ([bba529a](https://github.com/medikoo/es5-ext/commit/bba529a))
+
+
+
+<a name="0.10.33"></a>
+## [0.10.33](https://github.com/medikoo/es5-ext/compare/v0.10.32...v0.10.33) (2017-10-13)
+
+
+### Bug Fixes
+
+* **Object.assignDeep:** relax input validation ([1baf57d](https://github.com/medikoo/es5-ext/commit/1baf57d))
+
+
+
+<a name="0.10.32"></a>
+## [0.10.32](https://github.com/medikoo/es5-ext/compare/v0.10.31...v0.10.32) (2017-10-13)
+
+
+### Features
+
+* Object.assignDeep ([2345e0b](https://github.com/medikoo/es5-ext/commit/2345e0b))
+
+
+
+<a name="0.10.31"></a>
+## [0.10.31](https://github.com/medikoo/es5-ext/compare/v0.10.30...v0.10.31) (2017-10-09)
+
+
+### Features
+
+* Object.isPlainFunction utility ([031be0a](https://github.com/medikoo/es5-ext/commit/031be0a))
+
+
+
+<a name="0.10.30"></a>
+## [0.10.30](https://github.com/medikoo/es5-ext/compare/v0.10.29...v0.10.30) (2017-08-25)
+
+
+### Bug Fixes
+
+* value stringification for error message ([37bb96b](https://github.com/medikoo/es5-ext/commit/37bb96b))
+
+
+
+<a name="0.10.29"></a>
+## [0.10.29](https://github.com/medikoo/es5-ext/compare/v0.10.28...v0.10.29) (2017-08-18)
+
+
+### Bug Fixes
+
+* string.repeat after recent regression ([b02fab4](https://github.com/medikoo/es5-ext/commit/b02fab4))
+
+
+
+<a name="0.10.28"></a>
+## [0.10.28](https://github.com/medikoo/es5-ext/compare/v0.10.27...v0.10.28) (2017-08-18)
+
+
+### Features
+
+* array.isEmpty method ([b0cfbdd](https://github.com/medikoo/es5-ext/commit/b0cfbdd))
+* improve new lines representation ([860fe8b](https://github.com/medikoo/es5-ext/commit/860fe8b))
+* Object.ensureArray util ([595c341](https://github.com/medikoo/es5-ext/commit/595c341))
+* toShortStringRepresentation util ([6842d06](https://github.com/medikoo/es5-ext/commit/6842d06))
+
+
+
+<a name="0.10.27"></a>
+## [0.10.27](https://github.com/medikoo/es5-ext/compare/v0.10.26...v0.10.27) (2017-08-11)
+
+
+### Bug Fixes
+
+* isNumberValue should not crash on non-coercible values ([0db765e](https://github.com/medikoo/es5-ext/commit/0db765e))
+
+
+### Features
+
+* add Object.ensureFiniteNumber util ([11c67f5](https://github.com/medikoo/es5-ext/commit/11c67f5))
+* add Object.isFiniteNumber util ([fe5b55a](https://github.com/medikoo/es5-ext/commit/fe5b55a))
+
+
+
+<a name="0.10.26"></a>
+## [0.10.26](https://github.com/medikoo/es5-ext/compare/v0.10.25...v0.10.26) (2017-08-02)
+
+
+### Bug Fixes
+
+* **general:** ensure optionalChaining in index ([3df879a](https://github.com/medikoo/es5-ext/commit/3df879a))
+
+
+
+<a name="0.10.25"></a>
+## [0.10.25](https://github.com/medikoo/es5-ext/compare/v0.10.24...v0.10.25) (2017-08-02)
+
+
+### Features
+
+* **general:** optionalChaining utility ([26332b5](https://github.com/medikoo/es5-ext/commit/26332b5))
+
+
+
+<a name="0.10.24"></a>
+## [0.10.24](https://github.com/medikoo/es5-ext/compare/v0.10.23...v0.10.24) (2017-07-10)
+
+
+### Features
+
+* resolve global with CSP safe method ([d386449](https://github.com/medikoo/es5-ext/commit/d386449))
+
+
+
+<a name="0.10.23"></a>
+## [0.10.23](https://github.com/medikoo/es5-ext/compare/v0.10.22...v0.10.23) (2017-06-05)
+
+
+### Bug Fixes
+
+* **Error.custom:** allow non-string code ([e8db3a0](https://github.com/medikoo/es5-ext/commit/e8db3a0))
+* **Error.custom:** improve `ext` argument detection ([0edbfbc](https://github.com/medikoo/es5-ext/commit/0edbfbc))
+
+
+
+<a name="0.10.22"></a>
+## [0.10.22](https://github.com/medikoo/es5-ext/compare/v0.10.21...v0.10.22) (2017-05-31)
+
+
+### Bug Fixes
+
+* ensure proper symbols stringification in early implementations ([ce51900](https://github.com/medikoo/es5-ext/commit/ce51900))
+
+
+
+<a name="0.10.21"></a>
+## [0.10.21](https://github.com/medikoo/es5-ext/compare/v0.10.20...v0.10.21) (2017-05-22)
+
+
+### Features
+
+* support arrow functions in Function/#/to-tring-tokens.js ([ad3de1e](https://github.com/medikoo/es5-ext/commit/ad3de1e))
+
+
+
+<a name="0.10.20"></a>
+## [0.10.20](https://github.com/medikoo/es5-ext/compare/v0.10.19...v0.10.20) (2017-05-17)
+
+
+### Features
+
+* if listed copy not only if own property ([d7e7cef](https://github.com/medikoo/es5-ext/commit/d7e7cef))
+* support `ensure` option in Object.copy ([295326f](https://github.com/medikoo/es5-ext/commit/295326f))
+
+
+
+<a name="0.10.19"></a>
+## [0.10.19](https://github.com/medikoo/es5-ext/compare/v0.10.18...v0.10.19) (2017-05-17)
+
+
+### Features
+
+* support propertyNames option in Object.copy ([5442279](https://github.com/medikoo/es5-ext/commit/5442279))
+
+
+
+<a name="0.10.18"></a>
+## [0.10.18](https://github.com/medikoo/es5-ext/compare/v0.10.17...v0.10.18) (2017-05-15)
+
+
+### Bug Fixes
+
+* take all changes in safeToString ([3c5cd12](https://github.com/medikoo/es5-ext/commit/3c5cd12))
+
+
+
+<a name="0.10.17"></a>
+## [0.10.17](https://github.com/medikoo/es5-ext/compare/v0.10.16...v0.10.17) (2017-05-15)
+
+
+### Features
+
+* introduce Object.ensurePromise ([46a2f45](https://github.com/medikoo/es5-ext/commit/46a2f45))
+* introduce Object.isPromise ([27aecc8](https://github.com/medikoo/es5-ext/commit/27aecc8))
+* introduce safeToString ([0cc6a7b](https://github.com/medikoo/es5-ext/commit/0cc6a7b))
+
+
+
+<a name="0.10.16"></a>
+## [0.10.16](https://github.com/medikoo/es5-ext/compare/v0.10.15...v0.10.16) (2017-05-09)
+
+
+### Features
+
+* add String.prototype.count ([2e53241](https://github.com/medikoo/es5-ext/commit/2e53241))
+
+
+## Changelog for previous versions
+
+See `CHANGES` file
\ No newline at end of file
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/CHANGES b/kbase-extension/static/ext_packages/igv/es5-ext/CHANGES
new file mode 100644
index 0000000000..bb84baba3d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/CHANGES
@@ -0,0 +1,650 @@
+For recent changelog see CHANGELOG.md
+
+-----
+
+v0.10.15  --  2017.03.20
+* Fix Object.isValue (it was actually isNotValue)
+
+v0.10.14  --  2017.03.15
+* Object.isValue util
+
+v0.10.13  --  2017.03.13
+* Introduce JSON.safeStringify
+* Improve message handling in error/custom
+* Fix Array#concat shim
+* Improve Array#flatten algorithm so it's stack trace friendly
+* Make Object.isObject ES3 compatible
+
+v0.10.12  --  2016.07.01
+* Ensure symbols are copied in Object.mixin
+* Prevent RangeError errors in array#flatten
+* Do not validate invalidate dates in validDate
+
+v0.10.11  --  2015.12.18
+* Ensure that check for implementation of RegExp flags doesn't crash in V8 (thanks @mathiasbynens)
+
+v0.10.10  --  2015.12.11
+* Add Object.isNumberValue util
+
+v0.10.9  --  2015.12.01
+* Add Object.ensureNaturalNumber and Object.ensureNaturalNumberValue
+
+v0.10.8  --  2015.10.02
+* Add Number.isNatural
+* Add Object.find and Object.findKey
+* Support arrays in Object.copyDeep
+* Fix iteration issue in forEachRight and someRight
+* Fix detection of native sinh
+* Depend on es6-symbol v3
+
+v0.10.7  --  2015.04.22
+* New utlitities. They're convention differs from v0.10, as they were supposed to land in v1.
+  Still they're non breaking and start the conventions to be used in v1
+  * Object.validateArrayLike
+  * Object.validateArrayLikeObject
+  * Object.validateStringifiable
+  * Object.validateStringifiableValue
+  * Universal utilities for array-like/iterable objects
+    * Iterable.is
+    * Iterable.validate
+    * Iterable.validateObject
+    * Iterable.forEach
+* Fix camelToHyphen resolution, it must be absolutely reversable by hyphenToCamel
+* Fix calculations of large numbers in Math.tanh
+* Fix algorithm of Math.sinh
+* Fix indexes to not use real symbols
+* Fix length of String.fromCodePoint
+* Fix tests of Array#copyWithin
+* Update Travis CI configuration
+
+v0.10.6  --  2015.02.02
+* Fix handling of infinite values in Math.trunc
+* Fix handling of getters in Object.normalizeOptions
+
+v0.10.5  --  2015.01.20
+* Add Function#toStringTokens
+* Add Object.serialize and Object.unserialize
+* Add String.randomUniq
+* Fix Strin#camelToHyphen issue with tokens that end with digit
+* Optimise Number.isInteger logic
+* Improve documentation
+* Configure lint scripts
+* Fix spelling of LICENSE
+
+v0.10.4  --  2014.04.30
+* Assure maximum spec compliance of Array.of and Array.from (thanks @mathiasbynens)
+* Improve documentations
+
+v0.10.3  --  2014.04.29
+Provide accurate iterators handling:
+* Array.from improvements:
+  * Assure right unicode symbols resolution when processing strings in Array.from
+  * Rely on ES6 symbol shim and use native @@iterator Symbol if provided by environment
+* Add methods:
+  * Array.prototype.entries
+  * Array.prototype.keys
+  * Array.prototype.values
+  * Array.prototype[@@iterator]
+  * String.prototype[@@iterator]
+
+Improve documentation
+
+v0.10.2  --  2014.04.24
+- Simplify and deprecate `isCallable`. It seems in ES5 based engines there are
+  no callable objects which are `typeof obj !== 'function'`
+- Update Array.from map callback signature (up to latest resolution of TC39)
+- Improve documentation
+
+v0.10.1  --  2014.04.14
+Bump version for npm
+(Workaround for accidental premature publish & unpublish of v0.10.0 a while ago)
+
+v0.10.0  --  2014.04.13
+Major update:
+- All methods and function specified for ECMAScript 6 are now introduced as
+  shims accompanied with functions through which (optionally) they can be
+  implementend on native objects
+- Filename convention was changed to shorter and strictly lower case names. e.g.
+  `lib/String/prototype/starts-with` became `string/#/starts-with`
+- Generated functions are guaranteed to have expected length
+- Objects with null prototype (created via `Object.create(null)`) are widely
+  supported (older version have crashed due to implied `obj.hasOwnProperty` and
+  related invocations)
+- Support array subclasses
+- When handling lists do not limit its length to Uint32 range
+- Use newly introduced `Object.eq` for strict equality in place of `Object.is`
+- Iteration of Object have been improved so properties that were hidden or
+  removed after iteration started are not iterated.
+
+Additions:
+- `Array.isPlainArray`
+- `Array.validArray`
+- `Array.prototype.concat` (as updated with ES6)
+- `Array.prototype.copyWithin` (as introduced with ES6)
+- `Array.prototype.fill` (as introduced with ES6)
+- `Array.prototype.filter` (as updated with ES6)
+- `Array.prototype.findIndex` (as introduced with ES6)
+- `Array.prototype.map` (as updated with ES6)
+- `Array.prototype.separate`
+- `Array.prototype.slice` (as updated with ES6)
+- `Array.prototype.splice` (as updated with ES6)
+- `Function.prototype.copy`
+- `Math.acosh` (as introduced with ES6)
+- `Math.atanh` (as introduced with ES6)
+- `Math.cbrt` (as introduced with ES6)
+- `Math.clz32` (as introduced with ES6)
+- `Math.cosh` (as introduced with ES6)
+- `Math.expm1` (as introduced with ES6)
+- `Math.fround` (as introduced with ES6)
+- `Math.hypot` (as introduced with ES6)
+- `Math.imul` (as introduced with ES6)
+- `Math.log2` (as introduced with ES6)
+- `Math.log10` (as introduced with ES6)
+- `Math.log1p` (as introduced with ES6)
+- `Math.sinh` (as introduced with ES6)
+- `Math.tanh` (as introduced with ES6)
+- `Math.trunc` (as introduced with ES6)
+- `Number.EPSILON` (as introduced with ES6)
+- `Number.MIN_SAFE_INTEGER` (as introduced with ES6)
+- `Number.MAX_SAFE_INTEGER` (as introduced with ES6)
+- `Number.isFinite` (as introduced with ES6)
+- `Number.isInteger` (as introduced with ES6)
+- `Number.isSafeInteger` (as introduced with ES6)
+- `Object.create` (with fix for V8 issue which disallows prototype turn of
+  objects derived from null
+- `Object.eq` - Less restrictive version of `Object.is` based on SameValueZero
+  algorithm
+- `Object.firstKey`
+- `Object.keys` (as updated with ES6)
+- `Object.mixinPrototypes`
+- `Object.primitiveSet`
+- `Object.setPrototypeOf` (as introduced with ES6)
+- `Object.validObject`
+- `RegExp.escape`
+- `RegExp.prototype.match` (as introduced with ES6)
+- `RegExp.prototype.replace` (as introduced with ES6)
+- `RegExp.prototype.search` (as introduced with ES6)
+- `RegExp.prototype.split` (as introduced with ES6)
+- `RegExp.prototype.sticky` (as introduced with ES6)
+- `RegExp.prototype.unicode` (as introduced with ES6)
+- `String.fromCodePoint` (as introduced with ES6)
+- `String.raw` (as introduced with ES6)
+- `String.prototype.at`
+- `String.prototype.codePointAt` (as introduced with ES6)
+- `String.prototype.normalize` (as introduced with ES6)
+- `String.prototype.plainReplaceAll`
+
+Removals:
+- `reserved` set
+- `Array.prototype.commonLeft`
+- `Function.insert`
+- `Function.remove`
+- `Function.prototype.silent`
+- `Function.prototype.wrap`
+- `Object.descriptor` Move to external `d` project.
+  See: https://github.com/medikoo/d
+- `Object.diff`
+- `Object.extendDeep`
+- `Object.reduce`
+- `Object.values`
+- `String.prototype.trimCommonLeft`
+
+Renames:
+- `Function.i` into `Function.identity`
+- `Function.k` into `Function.constant`
+- `Number.toInt` into `Number.toInteger`
+- `Number.toUint` into `Number.toPosInteger`
+- `Object.extend` into `Object.assign` (as introduced in ES 6)
+- `Object.extendProperties` into `Object.mixin`, with improved internal
+  handling, so it matches temporarily specified `Object.mixin` for ECMAScript 6
+- `Object.isList` into `Object.isArrayLike`
+- `Object.mapToArray` into `Object.toArray` (with fixed function length)
+- `Object.toPlainObject` into `Object.normalizeOptions` (as this is the real
+  use case where we use this function)
+- `Function.prototype.chain` into `Function.prototype.compose`
+- `Function.prototype.match` into `Function.prototype.spread`
+- `String.prototype.format` into `String.formatMethod`
+
+Improvements & Fixes:
+- Remove workaround for primitive values handling in object iterators
+- `Array.from`: Update so it follows ES 6 spec
+- `Array.prototype.compact`: filters just null and undefined values
+  (not all falsies)
+- `Array.prototype.eIndexOf` and `Array.prototype.eLastIndexOf`: fix position
+  handling, improve internals
+- `Array.prototype.find`: return undefined not null, in case of not found
+  (follow ES 6)
+- `Array.prototype.remove` fix function length
+- `Error.custom`: simplify, Custom class case is addressed by outer
+  `error-create` project -> https://github.com/medikoo/error-create
+- `Error.isError` true only for Error instances (remove detection of host
+  Exception objects)
+- `Number.prototype.pad`: Normalize negative pad
+- `Object.clear`: Handle errors same way as in `Object.assign`
+- `Object.compact`: filters just null and undefined values (not all falsies)
+- `Object.compare`: Take into account NaN values
+- `Object.copy`: Split into `Object.copy` and `Object.copyDeep`
+- `Object.isCopy`: Separate into `Object.isCopy` and `Object.isCopyDeep`, where
+  `isCopyDeep` handles nested plain objects and plain arrays only
+- `String.prototype.endsWith`: Adjust up to ES6 specification
+- `String.prototype.repeat`: Adjust up to ES6 specification and improve algorithm
+- `String.prototype.simpleReplace`: Rename into `String.prototype.plainReplace`
+- `String.prototype.startsWith`: Adjust up to ES6 specification
+- Update lint rules, and adjust code to that
+- Update Travis CI configuration
+- Remove Makefile (it's cross-env utility)
+
+v0.9.2  --  2013.03.11
+Added:
+* Array.prototype.isCopy
+* Array.prototype.isUniq
+* Error.CustomError
+* Function.validFunction
+* Object.extendDeep
+* Object.descriptor.binder
+* Object.safeTraverse
+* RegExp.validRegExp
+* String.prototype.capitalize
+* String.prototype.simpleReplace
+
+Fixed:
+* Fix Array.prototype.diff for sparse arrays
+* Accept primitive objects as input values in Object iteration methods and
+  Object.clear, Object.count, Object.diff, Object.extend,
+  Object.getPropertyNames, Object.values
+* Pass expected arguments to callbacks of Object.filter, Object.mapKeys,
+  Object.mapToArray, Object.map
+* Improve callable callback support in Object.mapToArray
+
+v0.9.1  --  2012.09.17
+* Object.reduce - reduce for hash-like collections
+* Accapt any callable object as callback in Object.filter, mapKeys and map
+* Convention cleanup
+
+v0.9.0  --  2012.09.13
+We're getting to real solid API
+
+Removed:
+* Function#memoize - it's grown up to be external package, to be soon published
+  as 'memoizee'
+* String.guid - it doesn't fit es5-ext (extensions) concept, will be provided as
+  external package
+# Function.arguments - obsolete
+# Function.context - obsolete
+# Function#flip - not readable when used, so it was never used
+# Object.clone - obsolete and confusing
+
+Added:
+* String#camelToHyphen - String format convertion
+
+Renamed:
+* String#dashToCamelCase -> String#hyphenToCamel
+
+Fixes:
+* Object.isObject - Quote names in literals that match reserved keywords
+  (older implementations crashed on that)
+* String#repeat - Do not accept negative values (coerce them to 1)
+
+Improvements:
+* Array#remove - Accepts many arguments, we can now remove many values at once
+* Object iterators (forEach, map, some) - Compare function invoked with scope
+  object bound to this
+* Function#curry - Algorithm cleanup
+* Object.isCopy - Support for all types, not just plain objects
+* Object.isPlainObject - Support for cross-frame objects
+* Do not memoize any of the functions, it shouldn't be decided internally
+* Remove Object.freeze calls in reserved, it's not up to convention
+* Improved documentation
+* Better linting (hard-core approach using both JSLint mod and JSHint)
+* Optional arguments are now documented in funtions signature
+
+v0.8.2  --  2012.06.22
+Fix errors in Array's intersection and exclusion methods, related to improper
+usage of contains method
+
+v0.8.1  --  2012.06.13
+Reorganized internal logic of Function.prototype.memoize. So it's more safe now
+and clears cache properly. Additionally preventCache option was provided.
+
+v0.8.0  --  2012.05.28
+Again, major overhaul. Probably last experimental stuff was trashed, all API
+looks more like standard extensions now.
+
+Changes:
+* Turn all Object.prototype extensions into functions and move them to Object
+namespace. We learned that extending Object.prototype is bad idea in any case.
+* Rename Function.prototype.curry into Function.prototype.partial. This function
+  is really doing partial application while currying is slightly different
+  concept.
+* Convert Function.prototype.ncurry to new implementation of
+  Function.prototype.curry, it now serves real curry concept additionaly it
+  covers use cases for aritize and hold, which were removed.
+* Rename Array's peek to last, and provide support for sparse arrays in it
+* Rename Date's monthDaysCount into daysInMonth
+* Simplify object iterators, now order of iteration can be configured with just
+  compareFn argument (no extra byKeys option)
+* Rename Object.isDuplicate to Object.isCopy
+* Rename Object.isEqual to Object.is which is compatible with future 'is'
+  keyword
+* Function.memoize is now Function.prototype.memoize. Additionally clear cache
+  functionality is added, and access to original arguments object.
+* Rename validation functions: assertNotNull to validValue, assertCallable to
+  validCallable. validValue was moved to Object namespace. On success they now
+  return validated value instead of true, it supports better composition.
+  Additionally created Date.validDate and Error.validError
+* All documentation is now held in README.md not in code files.
+* Move guid to String namespace. All guids now start with numbers.
+* Array.generate: fill argument is now optional
+* Object.toArray is now Array.from (as new ES6 specification draft suggests)
+* All methods that rely on indexOf or lastIndexOf, now rely on egal (Object.is)
+  versions of them (eIndexOf, eLastIndexOf)
+* Turn all get* functions that returned methods into actuall methods (get*
+  functionality can still be achieved with help of Function.prototype.partial).
+  So: Date.getFormat is now Date.prototype.format,
+  Number.getPad is now Number.prototype.pad,
+  String.getFormat is now String.prototype.format,
+  String.getIndent is now String.prototype.indent,
+  String.getPad is now String.prototype.pad
+* Refactored Object.descriptor, it is now just two functions, main one and
+  main.gs, main is for describing values, and gs for describing getters and
+  setters. Configuration is passed with first argument as string e.g. 'ce' for
+  configurable and enumerable. If no configuration string is provided then by
+  default it returns configurable and writable but not enumerable for value or
+  configurable but not enumerable for getter/setter
+* Function.prototype.silent now returns prepared function (it was
+  expected to be fixed for 0.7)
+* Reserved keywords map (reserved) is now array not hash.
+* Object.merge is now Object.extend (while former Object.extend was completely
+  removed) - 'extend' implies that we change object, not creating new one (as
+  'merge' may imply). Similarily Object.mergeProperties was renamed to
+  Object.extendProperties
+* Position argument support in Array.prototype.contains and
+  String.prototype.contains (so it follows ES6 specification draft)
+* endPosition argument support in String.prototype.endsWith and fromPosition
+  argument support in String.prototype.startsWith (so it follows ES6
+  specification draft)
+* Better and cleaner String.prototype.indent implementation. No default value
+  for indent string argument, optional nest value (defaults to 1), remove
+  nostart argument
+* Correct length values for most methods (so they reflect length of similar
+  methods in standard)
+* Length argument is now optional in number and string pad methods.
+* Improve arguments validation in general, so it adheres to standard conventions
+* Fixed format of package.json
+
+Removed methods and functions:
+* Object.prototype.slice - Object is not ordered collection, so slice doesn't
+  make sense.
+* Function's rcurry, rncurry, s - too cumbersome for JS, not many use cases for
+  that
+* Function.prototype.aritize and Function.prototype.hold - same functionality
+  can be achieved with new Function.prototype.curry
+* Function.prototype.log - provided more generic Function.prototype.wrap for
+  same use case
+* getNextIdGenerator - no use case for that (String.guid should be used if
+  needed)
+* Object.toObject - Can be now acheived with Object(validValue(x))
+* Array.prototype.someValue - no real use case (personally used once and
+  case was already controversial)
+* Date.prototype.duration - moved to external package
+* Number.getAutoincrement - No real use case
+* Object.prototype.extend, Object.prototype.override,
+  Object.prototype.plainCreate, Object.prototype.plainExtend - It was probably
+  too complex, same should be achieved just with Object.create,
+  Object.descriptor and by saving references to super methods in local scope.
+* Object.getCompareBy - Functions should be created individually for each use
+  case
+* Object.get, Object.getSet, Object.set, Object.unset - Not many use cases and
+  same can be easily achieved with simple inline function
+* String.getPrefixWith - Not real use case for something that can be easily
+  achieved with '+' operator
+* Object.isPrimitive - It's just negation of Object.isObject
+* Number.prototype.isLess, Number.prototype.isLessOrEqual - they shouldn't be in
+  Number namespace and should rather be addressed with simple inline functions.
+* Number.prototype.subtract - Should rather be addressed with simple inline
+  function
+
+New methods and functions:
+* Array.prototype.lastIndex - Returns last declared index in array
+* String.prototype.last - last for strings
+* Function.prototype.wrap - Wrap function with other, it allows to specify
+  before and after behavior transform return value or prevent original function
+  from being called.
+* Math.sign - Returns sign of a number (already in ES6 specification draft)
+* Number.toInt - Converts value to integer (already in ES6 specification draft)
+* Number.isNaN - Returns true if value is NaN (already in ES6 specification
+  draft)
+* Number.toUint - Converts value to unsigned integer
+* Number.toUint32 - Converts value to 32bit unsigned integer
+* Array.prototype.eIndexOf, eLastIndexOf - Egal version (that uses Object.is) of
+  standard methods (all methods that were using native indexOf or lastIndexOf
+  now uses eIndexOf and elastIndexOf respectively)
+* Array.of - as it's specified for ES6
+
+Fixes:
+* Fixed binarySearch so it always returns valid list index
+* Object.isList - it failed on lists that are callable (e.g. NodeList in Nitro
+  engine)
+* Object.map now supports third argument for callback
+
+v0.7.1  --  2012.01.05
+New methods:
+* Array.prototype.firstIndex - returns first valid index of array (for
+	sparse arrays it may not be '0'
+
+Improvements:
+* Array.prototype.first - now returns value for index returned by firstIndex
+* Object.prototype.mapToArray - can be called without callback, then array of
+	key-value pairs is returned
+
+Fixes
+* Array.prototype.forEachRight, object's length read through UInt32 conversion
+
+v0.7.0  --  2011.12.27
+Major update.
+Stepped back from experimental ideas and introduced more standard approach
+taking example from how ES5 methods and functions are designed. One exceptions
+is that, we don’t refrain from declaring methods for Object.prototype - it’s up
+to developer whether how he decides to use it in his context (as function or as
+method).
+
+In general:
+* Removed any method 'functionalization' and functionalize method itself.
+	es5-ext declares plain methods, which can be configured to work as functions
+	with call.bind(method) - see documentation.
+* Removed separation of Object methods for ES5 (with descriptors) and
+	ES3 (plain) - we're following ES5 idea on that, some methods are intended just
+	for enumerable properties and some are for all properties, all are declared
+	for Object.prototype
+* Removed separation of Array generic (collected in List folder) and not generic
+	methods (collected in Array folder). Now all methods are generic and are in
+	Array/prototype folder. This separation also meant, that methods in Array are
+	usually destructive. We don’t do that separation now, there’s generally no use
+	case for destructive iterators, we should be fine with one version of each
+	method, (same as ES5 is fine with  e.g. one, non destructive 'filter' method)
+* Folder structure resembles tree of native ES5 Objects
+* All methods are written with ES5 conventions in mind, it means that most
+	methods are generic and can be run on any object. In more detail:
+	** Array.prototype and Object.prototype methods can be run on any object (any
+		not null or undefined value),
+	** Date.prototype methods should be called only on Date instances.
+	** Function.prototype methods can be called on any callable objects (not
+		necessarily functions)
+	** Number.prototype & String.prototype methods can be called on any value, in
+		case of Number it it’ll be degraded to number, in case of string it’ll be
+		degraded to string.
+* Travis CI support (only for Node v0.6 branch, as v0.4 has buggy V8 version)
+
+Improvements for existing functions and methods:
+* Function.memoize (was Function.cache) is now fully generic, can operate on any
+	type of arguments and it’s NaN safe (all NaN objects are considered equal)
+* Method properties passed to Object.prototype.extend or
+	Object.prototype.override can aside of _super optionally take prototype object
+	via _proto argument
+* Object iterators: forEach, mapToArray and every can now iterate in specified
+	order
+* pluck, invoke and other functions that return reusable functions or methods
+	have now their results memoized.
+
+New methods:
+* Global: assertNotNull, getNextIdGenerator, guid, isEqual, isPrimitive,
+	toObject
+* Array: generate
+* Array.prototype: binarySearch, clear, contains, diff, exclusion, find, first,
+	forEachRight, group, indexesOf, intersection, remove, someRight, someValue
+* Boolean: isBoolean
+* Date: isDate
+* Function: arguments, context, insert, isArguments, remove
+* Function.prototype: not, silent
+* Number: getAutoincrement, isNumber
+* Number.prototype: isLessOrEqual, isLess, subtract
+* Object: assertCallable, descriptor (functions for clean descriptors),
+	getCompareBy, isCallable, isObject
+* Object.prototype: clone (real clone), compact, count, diff, empty,
+	getPropertyNames, get, keyOf, mapKeys, override, plainCreate, plainExtend,
+	slice, some, unset
+* RegExp: isRegExp
+* String: getPrefixWith, isString
+* String.prototype: caseInsensitiveCompare, contains, isNumeric
+
+Renamed methods:
+* Date.clone -> Date.prototype.copy
+* Date.format -> Date.getFormat
+* Date/day/floor -> Date.prototype.floorDay
+* Date/month/floor -> Date.prototype.floorMonth
+* Date/month/year -> Date.prototype.floorYear
+* Function.cache -> Function.memoize
+* Function.getApplyArg -> Function.prototype.match
+* Function.sequence -> Function.prototype.chain
+* List.findSameStartLength -> Array.prototype.commonLeft
+* Number.pad -> Number.getPad
+* Object/plain/clone -> Object.prototype.copy
+* Object/plain/elevate -> Object.prototype.flatten
+* Object/plain/same -> Object.prototype.isDuplicate
+* Object/plain/setValue -> Object.getSet
+* String.format -> String.getFormat
+* String.indent -> String.getIndent
+* String.pad -> String.getPad
+* String.trimLeftStr -> String.prototype.trimCommonLeft
+* Object.merge -> Object.prototype.mergeProperties
+* Object/plain/pluck -> Object.prototype.get
+* Array.clone is now Array.prototype.copy and can be used also on any array-like
+	objects
+* List.isList -> Object.isList
+* List.toArray -> Object.prototype.toArray
+* String/convert/dashToCamelCase -> String.prototype.dashToCamelCase
+
+Removed methods:
+* Array.compact - removed destructive version (that operated on same array), we
+	have now non destructive version as Array.prototype.compact.
+* Function.applyBind -> use apply.bind directly
+* Function.bindBind -> use bind.bind directly
+* Function.callBind -> use call.bind directly
+* Fuction.clone -> no valid use case
+* Function.dscope -> controversial approach, shouldn’t be considered seriously
+* Function.functionalize -> It was experimental but standards are standards
+* List/sort/length -> It can be easy obtained by Object.getCompareBy(‘length’)
+* List.concat -> Concat’s for array-like’s makes no sense, just convert to array
+	first
+* List.every -> Use Array.prototype.every directly
+* List.filter -> Use Array.prototype.filter directly
+* List.forEach -> User Array.prototype.forEach directly
+* List.isListObject -> No valid use case, do: isList(list) && (typeof list ===
+	'object’)
+* List.map -> Use Array.prototype.map directly
+* List.reduce -> Use Array.prototype.reduce directly
+* List.shiftSame -> Use Array.prototype.commonLeft and do slice
+* List.slice -> Use Array.prototype.slice directly
+* List.some -> Use Array.prototype.some directly
+* Object.bindMethods -> it was version that considered descriptors, we have now
+	Object.prototype.bindMethods which operates only on enumerable properties
+* Object.every -> version that considered all properties, we have now
+	Object.prototype.every which iterates only enumerables
+* Object.invoke -> no use case
+* Object.mergeDeep -> no use case
+* Object.pluck -> no use case
+* Object.same -> it considered descriptors, now there’s only Object.isDuplicate
+	which compares only enumerable properties
+* Object.sameType -> no use case
+* Object.toDescriptor and Object.toDescriptors -> replaced by much nicer
+	Object.descriptor functions
+* Object/plain/link -> no use case (it was used internally only by
+	Object/plain/merge)
+* Object/plain/setTrue -> now easily configurable by more universal
+	Object.getSet(true)
+* String.trimRightStr -> Eventually String.prototype.trimCommonRight will be
+	added
+
+v0.6.3  --  2011.12.12
+* Cleared npm warning for misnamed property in package.json
+
+v0.6.2  --  2011.08.12
+* Calling String.indent without scope (global scope then) now treated as calling
+  it with null scope, it allows more direct invocations when using default nest
+  string: indent().call(str, nest)
+
+v0.6.1  --  2011.08.08
+* Added TAD test suite to devDependencies, configured test commands.
+  Tests can be run with 'make test' or 'npm test'
+
+v0.6.0  --  2011.08.07
+New methods:
+* Array: clone, compact (in place)
+* Date: format, duration, clone, monthDaysCount, day.floor, month.floor,
+  year.floor
+* Function: getApplyArg, , ncurry, rncurry, hold, cache, log
+* List: findSameStartLength, shiftSame, peek, isListObject
+* Number: pad
+* Object: sameType, toString, mapToArray, mergeDeep, toDescriptor,
+  toDescriptors, invoke
+* String: startsWith, endsWith, indent, trimLeftStr, trimRightStr, pad, format
+
+Fixed:
+* Object.extend does now prototypal extend as exptected
+* Object.merge now tries to overwrite only configurable properties
+* Function.flip
+
+Improved:
+* Faster List.toArray
+* Better global retrieval
+* Functionalized all Function methods
+* Renamed bindApply and bindCall to applyBind and callBind
+* Removed Function.inherit (as it's unintuitive curry clone)
+* Straightforward logic in Function.k
+* Fixed naming of some tests files (letter case issue)
+* Renamed Function.saturate into Function.lock
+* String.dashToCamelCase digits support
+* Strings now considered as List objects
+* Improved List.compact
+* Concise logic for List.concat
+* Test wit TAD in clean ES5 context
+
+v0.5.1  --  2011.07.11
+* Function's bindBind, bindCall and bindApply now more versatile
+
+v0.5.0  --  2011.07.07
+* Removed Object.is and List.apply
+* Renamed Object.plain.is to Object.plain.isPlainObject (keep naming convention
+  consistent)
+* Improved documentation
+
+v0.4.0  --  2011.07.05
+* Take most functions on Object to Object.plain to keep them away from object
+  descriptors
+* Object functions with ES5 standard in mind (object descriptors)
+
+v0.3.0  --  2011.06.24
+* New functions
+* Consistent file naming (dash instead of camelCase)
+
+v0.2.1  --  2011.05.28
+* Renamed Functions.K and Function.S to to lowercase versions (use consistent
+  naming)
+
+v0.2.0  --  2011.05.28
+* Renamed Array folder to List (as its generic functions for array-like objects)
+* Added Makefile
+* Added various functions
+
+v0.1.0  --  2011.05.24
+* Initial version
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/LICENSE b/kbase-extension/static/ext_packages/igv/es5-ext/LICENSE
new file mode 100644
index 0000000000..c54cfb17ce
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/LICENSE
@@ -0,0 +1,15 @@
+ISC License
+
+Copyright (c) 2011-2018, Mariusz Nowak, @medikoo, medikoo.com
+
+Permission to use, copy, modify, and/or distribute this software for any
+purpose with or without fee is hereby granted, provided that the above
+copyright notice and this permission notice appear in all copies.
+
+THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH
+REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY
+AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT,
+INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM
+LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
+OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
+PERFORMANCE OF THIS SOFTWARE.
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/README.md b/kbase-extension/static/ext_packages/igv/es5-ext/README.md
new file mode 100644
index 0000000000..0a33d7d3f5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/README.md
@@ -0,0 +1,1018 @@
+[![Build status][nix-build-image]][nix-build-url]
+[![Windows status][win-build-image]][win-build-url]
+![Transpilation status][transpilation-image]
+[![npm version][npm-image]][npm-url]
+
+# es5-ext
+
+## ECMAScript 5 extensions
+
+### (with respect to ECMAScript 6 standard)
+
+Shims for upcoming ES6 standard and other goodies implemented strictly with ECMAScript conventions in mind.
+
+It's designed to be used in compliant ECMAScript 5 or ECMAScript 6 environments. Older environments are not supported, although most of the features should work with correct ECMAScript 5 shim on board.
+
+When used in ECMAScript 6 environment, native implementation (if valid) takes precedence over shims.
+
+### Installation
+
+    $ npm install es5-ext
+
+To port it to Browser or any other (non CJS) environment, use your favorite CJS bundler. No favorite yet? Try: [Browserify](http://browserify.org/), [Webmake](https://github.com/medikoo/modules-webmake) or [Webpack](http://webpack.github.io/)
+
+### Usage
+
+#### ECMAScript 6 features
+
+You can force ES6 features to be implemented in your environment, e.g. following will assign `from` function to `Array` (only if it's not implemented already).
+
+```javascript
+require("es5-ext/array/from/implement");
+Array.from("foo"); // ['f', 'o', 'o']
+```
+
+You can also access shims directly, without fixing native objects. Following will return native `Array.from` if it's available and fallback to shim if it's not.
+
+```javascript
+var aFrom = require("es5-ext/array/from");
+aFrom("foo"); // ['f', 'o', 'o']
+```
+
+If you want to use shim unconditionally (even if native implementation exists) do:
+
+```javascript
+var aFrom = require("es5-ext/array/from/shim");
+aFrom("foo"); // ['f', 'o', 'o']
+```
+
+##### List of ES6 shims
+
+It's about properties introduced with ES6 and those that have been updated in new spec.
+
+* `Array.from` -> `require('es5-ext/array/from')`
+* `Array.of` -> `require('es5-ext/array/of')`
+* `Array.prototype.concat` -> `require('es5-ext/array/#/concat')`
+* `Array.prototype.copyWithin` -> `require('es5-ext/array/#/copy-within')`
+* `Array.prototype.entries` -> `require('es5-ext/array/#/entries')`
+* `Array.prototype.fill` -> `require('es5-ext/array/#/fill')`
+* `Array.prototype.filter` -> `require('es5-ext/array/#/filter')`
+* `Array.prototype.find` -> `require('es5-ext/array/#/find')`
+* `Array.prototype.findIndex` -> `require('es5-ext/array/#/find-index')`
+* `Array.prototype.keys` -> `require('es5-ext/array/#/keys')`
+* `Array.prototype.map` -> `require('es5-ext/array/#/map')`
+* `Array.prototype.slice` -> `require('es5-ext/array/#/slice')`
+* `Array.prototype.splice` -> `require('es5-ext/array/#/splice')`
+* `Array.prototype.values` -> `require('es5-ext/array/#/values')`
+* `Array.prototype[@@iterator]` -> `require('es5-ext/array/#/@@iterator')`
+* `Math.acosh` -> `require('es5-ext/math/acosh')`
+* `Math.asinh` -> `require('es5-ext/math/asinh')`
+* `Math.atanh` -> `require('es5-ext/math/atanh')`
+* `Math.cbrt` -> `require('es5-ext/math/cbrt')`
+* `Math.clz32` -> `require('es5-ext/math/clz32')`
+* `Math.cosh` -> `require('es5-ext/math/cosh')`
+* `Math.exmp1` -> `require('es5-ext/math/expm1')`
+* `Math.fround` -> `require('es5-ext/math/fround')`
+* `Math.hypot` -> `require('es5-ext/math/hypot')`
+* `Math.imul` -> `require('es5-ext/math/imul')`
+* `Math.log1p` -> `require('es5-ext/math/log1p')`
+* `Math.log2` -> `require('es5-ext/math/log2')`
+* `Math.log10` -> `require('es5-ext/math/log10')`
+* `Math.sign` -> `require('es5-ext/math/sign')`
+* `Math.signh` -> `require('es5-ext/math/signh')`
+* `Math.tanh` -> `require('es5-ext/math/tanh')`
+* `Math.trunc` -> `require('es5-ext/math/trunc')`
+* `Number.EPSILON` -> `require('es5-ext/number/epsilon')`
+* `Number.MAX_SAFE_INTEGER` -> `require('es5-ext/number/max-safe-integer')`
+* `Number.MIN_SAFE_INTEGER` -> `require('es5-ext/number/min-safe-integer')`
+* `Number.isFinite` -> `require('es5-ext/number/is-finite')`
+* `Number.isInteger` -> `require('es5-ext/number/is-integer')`
+* `Number.isNaN` -> `require('es5-ext/number/is-nan')`
+* `Number.isSafeInteger` -> `require('es5-ext/number/is-safe-integer')`
+* `Object.assign` -> `require('es5-ext/object/assign')`
+* `Object.keys` -> `require('es5-ext/object/keys')`
+* `Object.setPrototypeOf` -> `require('es5-ext/object/set-prototype-of')`
+* `RegExp.prototype.match` -> `require('es5-ext/reg-exp/#/match')`
+* `RegExp.prototype.replace` -> `require('es5-ext/reg-exp/#/replace')`
+* `RegExp.prototype.search` -> `require('es5-ext/reg-exp/#/search')`
+* `RegExp.prototype.split` -> `require('es5-ext/reg-exp/#/split')`
+* `RegExp.prototype.sticky` -> Implement with `require('es5-ext/reg-exp/#/sticky/implement')`, use as function with `require('es5-ext/reg-exp/#/is-sticky')`
+* `RegExp.prototype.unicode` -> Implement with `require('es5-ext/reg-exp/#/unicode/implement')`, use as function with `require('es5-ext/reg-exp/#/is-unicode')`
+* `String.fromCodePoint` -> `require('es5-ext/string/from-code-point')`
+* `String.raw` -> `require('es5-ext/string/raw')`
+* `String.prototype.codePointAt` -> `require('es5-ext/string/#/code-point-at')`
+* `String.prototype.contains` -> `require('es5-ext/string/#/contains')`
+* `String.prototype.endsWith` -> `require('es5-ext/string/#/ends-with')`
+* `String.prototype.normalize` -> `require('es5-ext/string/#/normalize')`
+* `String.prototype.repeat` -> `require('es5-ext/string/#/repeat')`
+* `String.prototype.startsWith` -> `require('es5-ext/string/#/starts-with')`
+* `String.prototype[@@iterator]` -> `require('es5-ext/string/#/@@iterator')`
+
+#### Non ECMAScript standard features
+
+**es5-ext** provides also other utils, and implements them as if they were proposed for a standard. It mostly offers methods (not functions) which can directly be assigned to native prototypes:
+
+```javascript
+Object.defineProperty(Function.prototype, "partial", {
+	value: require("es5-ext/function/#/partial"),
+	configurable: true,
+	enumerable: false,
+	writable: true
+});
+Object.defineProperty(Array.prototype, "flatten", {
+	value: require("es5-ext/array/#/flatten"),
+	configurable: true,
+	enumerable: false,
+	writable: true
+});
+Object.defineProperty(String.prototype, "capitalize", {
+	value: require("es5-ext/string/#/capitalize"),
+	configurable: true,
+	enumerable: false,
+	writable: true
+});
+```
+
+See [es5-extend](https://github.com/wookieb/es5-extend#es5-extend), a great utility that automatically will extend natives for you.
+
+**Important:** Remember to **not** extend natives in scope of generic reusable packages (e.g. ones you intend to publish to npm). Extending natives is fine **only** if you're the _owner_ of the global scope, so e.g. in final project you lead development of.
+
+When you're in situation when native extensions are not good idea, then you should use methods indirectly:
+
+```javascript
+var flatten = require("es5-ext/array/#/flatten");
+
+flatten.call([1, [2, [3, 4]]]); // [1, 2, 3, 4]
+```
+
+for better convenience you can turn methods into functions:
+
+```javascript
+var call = Function.prototype.call;
+var flatten = call.bind(require("es5-ext/array/#/flatten"));
+
+flatten([1, [2, [3, 4]]]); // [1, 2, 3, 4]
+```
+
+You can configure custom toolkit (like [underscorejs](http://underscorejs.org/)), and use it throughout your application
+
+```javascript
+var util = {};
+util.partial = call.bind(require("es5-ext/function/#/partial"));
+util.flatten = call.bind(require("es5-ext/array/#/flatten"));
+util.startsWith = call.bind(require("es5-ext/string/#/starts-with"));
+
+util.flatten([1, [2, [3, 4]]]); // [1, 2, 3, 4]
+```
+
+As with native ones most methods are generic and can be run on any type of object.
+
+## API
+
+### Global extensions
+
+#### global _(es5-ext/global)_
+
+Object that represents global scope
+
+### Array Constructor extensions
+
+#### from(arrayLike[, mapFn[, thisArg]]) _(es5-ext/array/from)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.from).  
+Returns array representation of _iterable_ or _arrayLike_. If _arrayLike_ is an instance of array, its copy is returned.
+
+#### generate([length[, …fill]]) _(es5-ext/array/generate)_
+
+Generate an array of pre-given _length_ built of repeated arguments.
+
+#### isPlainArray(x) _(es5-ext/array/is-plain-array)_
+
+Returns true if object is plain array (not instance of one of the Array's extensions).
+
+#### of([…items]) _(es5-ext/array/of)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.of).  
+Create an array from given arguments.
+
+#### toArray(obj) _(es5-ext/array/to-array)_
+
+Returns array representation of `obj`. If `obj` is already an array, `obj` is returned back.
+
+#### validArray(obj) _(es5-ext/array/valid-array)_
+
+Returns `obj` if it's an array, otherwise throws `TypeError`
+
+### Array Prototype extensions
+
+#### arr.binarySearch(compareFn) _(es5-ext/array/#/binary-search)_
+
+In **sorted** list search for index of item for which _compareFn_ returns value closest to _0_.  
+It's variant of binary search algorithm
+
+#### arr.clear() _(es5-ext/array/#/clear)_
+
+Clears the array
+
+#### arr.compact() _(es5-ext/array/#/compact)_
+
+Returns a copy of the context with all non-values (`null` or `undefined`) removed.
+
+#### arr.concat() _(es5-ext/array/#/concat)_
+
+[_Updated with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.prototype.concat).  
+ES6's version of `concat`. Supports `isConcatSpreadable` symbol, and returns array of same type as the context.
+
+#### arr.contains(searchElement[, position]) _(es5-ext/array/#/contains)_
+
+Whether list contains the given value.
+
+#### arr.copyWithin(target, start[, end]) _(es5-ext/array/#/copy-within)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.copywithin).
+
+#### arr.diff(other) _(es5-ext/array/#/diff)_
+
+Returns the array of elements that are present in context list but not present in other list.
+
+#### arr.eIndexOf(searchElement[, fromIndex]) _(es5-ext/array/#/e-index-of)_
+
+_egal_ version of `indexOf` method. [_SameValueZero_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-samevaluezero) logic is used for comparision
+
+#### arr.eLastIndexOf(searchElement[, fromIndex]) _(es5-ext/array/#/e-last-index-of)_
+
+_egal_ version of `lastIndexOf` method. [_SameValueZero_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-samevaluezero) logic is used for comparision
+
+#### arr.entries() _(es5-ext/array/#/entries)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.prototype.entries).  
+Returns iterator object, which traverses the array. Each value is represented with an array, where first value is an index and second is corresponding to index value.
+
+#### arr.exclusion([…lists]]) _(es5-ext/array/#/exclusion)_
+
+Returns the array of elements that are found only in one of the lists (either context list or list provided in arguments).
+
+#### arr.fill(value[, start, end]) _(es5-ext/array/#/fill)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.fill).
+
+#### arr.filter(callback[, thisArg]) _(es5-ext/array/#/filter)_
+
+[_Updated with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.filter).  
+ES6's version of `filter`, returns array of same type as the context.
+
+#### arr.find(predicate[, thisArg]) _(es5-ext/array/#/find)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.find).  
+Return first element for which given function returns true
+
+#### arr.findIndex(predicate[, thisArg]) _(es5-ext/array/#/find-index)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.findindex).  
+Return first index for which given function returns true
+
+#### arr.first() _(es5-ext/array/#/first)_
+
+Returns value for first defined index
+
+#### arr.firstIndex() _(es5-ext/array/#/first-index)_
+
+Returns first declared index of the array
+
+#### arr.flatten() _(es5-ext/array/#/flatten)_
+
+Returns flattened version of the array
+
+#### arr.forEachRight(cb[, thisArg]) _(es5-ext/array/#/for-each-right)_
+
+`forEach` starting from last element
+
+#### arr.group(cb[, thisArg]) _(es5-ext/array/#/group)_
+
+Group list elements by value returned by _cb_ function
+
+#### arr.indexesOf(searchElement[, fromIndex]) _(es5-ext/array/#/indexes-of)_
+
+Returns array of all indexes of given value
+
+#### arr.intersection([…lists]) _(es5-ext/array/#/intersection)_
+
+Computes the array of values that are the intersection of all lists (context list and lists given in arguments)
+
+#### arr.isCopy(other) _(es5-ext/array/#/is-copy)_
+
+Returns true if both context and _other_ lists have same content
+
+#### arr.isUniq() _(es5-ext/array/#/is-uniq)_
+
+Returns true if all values in array are unique
+
+#### arr.keys() _(es5-ext/array/#/keys)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.prototype.keys).  
+Returns iterator object, which traverses all array indexes.
+
+#### arr.last() _(es5-ext/array/#/last)_
+
+Returns value of last defined index
+
+#### arr.lastIndex() _(es5-ext/array/#/last)_
+
+Returns last defined index of the array
+
+#### arr.map(callback[, thisArg]) _(es5-ext/array/#/map)_
+
+[_Updated with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.map).  
+ES6's version of `map`, returns array of same type as the context.
+
+#### arr.remove(value[, …valuen]) _(es5-ext/array/#/remove)_
+
+Remove values from the array
+
+#### arr.separate(sep) _(es5-ext/array/#/separate)_
+
+Returns array with items separated with `sep` value
+
+#### arr.slice(callback[, thisArg]) _(es5-ext/array/#/slice)_
+
+[_Updated with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.slice).  
+ES6's version of `slice`, returns array of same type as the context.
+
+#### arr.someRight(cb[, thisArg]) _(es5-ext/array/#/someRight)_
+
+`some` starting from last element
+
+#### arr.splice(callback[, thisArg]) _(es5-ext/array/#/splice)_
+
+[_Updated with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.splice).  
+ES6's version of `splice`, returns array of same type as the context.
+
+#### arr.uniq() _(es5-ext/array/#/uniq)_
+
+Returns duplicate-free version of the array
+
+#### arr.values() _(es5-ext/array/#/values)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.prototype.values).  
+Returns iterator object which traverses all array values.
+
+#### arr[@@iterator] _(es5-ext/array/#/@@iterator)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-array.prototype-@@iterator).  
+Returns iterator object which traverses all array values.
+
+### Boolean Constructor extensions
+
+#### isBoolean(x) _(es5-ext/boolean/is-boolean)_
+
+Whether value is boolean
+
+### Date Constructor extensions
+
+#### isDate(x) _(es5-ext/date/is-date)_
+
+Whether value is date instance
+
+#### validDate(x) _(es5-ext/date/valid-date)_
+
+If given object is not date throw TypeError in other case return it.
+
+### Date Prototype extensions
+
+#### date.copy(date) _(es5-ext/date/#/copy)_
+
+Returns a copy of the date object
+
+#### date.daysInMonth() _(es5-ext/date/#/days-in-month)_
+
+Returns number of days of date's month
+
+#### date.floorDay() _(es5-ext/date/#/floor-day)_
+
+Sets the date time to 00:00:00.000
+
+#### date.floorMonth() _(es5-ext/date/#/floor-month)_
+
+Sets date day to 1 and date time to 00:00:00.000
+
+#### date.floorYear() _(es5-ext/date/#/floor-year)_
+
+Sets date month to 0, day to 1 and date time to 00:00:00.000
+
+#### date.format(pattern) _(es5-ext/date/#/format)_
+
+Formats date up to given string. Supported patterns:
+
+* `%Y` - Year with century, 1999, 2003
+* `%y` - Year without century, 99, 03
+* `%m` - Month, 01..12
+* `%d` - Day of the month 01..31
+* `%H` - Hour (24-hour clock), 00..23
+* `%M` - Minute, 00..59
+* `%S` - Second, 00..59
+* `%L` - Milliseconds, 000..999
+
+### Error Constructor extensions
+
+#### custom(message/_, code, ext_/) _(es5-ext/error/custom)_
+
+Creates custom error object, optinally extended with `code` and other extension properties (provided with `ext` object)
+
+#### isError(x) _(es5-ext/error/is-error)_
+
+Whether value is an error (instance of `Error`).
+
+#### validError(x) _(es5-ext/error/valid-error)_
+
+If given object is not error throw TypeError in other case return it.
+
+### Error Prototype extensions
+
+#### err.throw() _(es5-ext/error/#/throw)_
+
+Throws error
+
+### Function Constructor extensions
+
+Some of the functions were inspired by [Functional JavaScript](http://osteele.com/sources/javascript/functional/) project by Olivier Steele
+
+#### constant(x) _(es5-ext/function/constant)_
+
+Returns a constant function that returns pregiven argument
+
+_k(x)(y) =def x_
+
+#### identity(x) _(es5-ext/function/identity)_
+
+Identity function. Returns first argument
+
+_i(x) =def x_
+
+#### invoke(name[, …args]) _(es5-ext/function/invoke)_
+
+Returns a function that takes an object as an argument, and applies object's
+_name_ method to arguments.  
+_name_ can be name of the method or method itself.
+
+_invoke(name, …args)(object, …args2) =def object\[name\]\(…args, …args2\)_
+
+#### isArguments(x) _(es5-ext/function/is-arguments)_
+
+Whether value is arguments object
+
+#### isFunction(arg) _(es5-ext/function/is-function)_
+
+Whether value is instance of function
+
+#### noop() _(es5-ext/function/noop)_
+
+No operation function
+
+#### pluck(name) _(es5-ext/function/pluck)_
+
+Returns a function that takes an object, and returns the value of its _name_
+property
+
+_pluck(name)(obj) =def obj[name]_
+
+#### validFunction(arg) _(es5-ext/function/valid-function)_
+
+If given object is not function throw TypeError in other case return it.
+
+### Function Prototype extensions
+
+Some of the methods were inspired by [Functional JavaScript](http://osteele.com/sources/javascript/functional/) project by Olivier Steele
+
+#### fn.compose([…fns]) _(es5-ext/function/#/compose)_
+
+Applies the functions in reverse argument-list order.
+
+_f1.compose(f2, f3, f4)(…args) =def f1(f2(f3(f4(…arg))))_
+
+#### fn.copy() _(es5-ext/function/#/copy)_
+
+Produces copy of given function
+
+#### fn.curry([n]) _(es5-ext/function/#/curry)_
+
+Invoking the function returned by this function only _n_ arguments are passed to the underlying function. If the underlying function is not saturated, the result is a function that passes all its arguments to the underlying function.  
+If _n_ is not provided then it defaults to context function length
+
+_f.curry(4)(arg1, arg2)(arg3)(arg4) =def f(arg1, args2, arg3, arg4)_
+
+#### fn.lock([…args]) _(es5-ext/function/#/lock)_
+
+Returns a function that applies the underlying function to _args_, and ignores its own arguments.
+
+_f.lock(…args)(…args2) =def f(…args)_
+
+_Named after it's counterpart in Google Closure_
+
+#### fn.not() _(es5-ext/function/#/not)_
+
+Returns a function that returns boolean negation of value returned by underlying function.
+
+_f.not()(…args) =def !f(…args)_
+
+#### fn.partial([…args]) _(es5-ext/function/#/partial)_
+
+Returns a function that when called will behave like context function called with initially passed arguments. If more arguments are suplilied, they are appended to initial args.
+
+_f.partial(…args1)(…args2) =def f(…args1, …args2)_
+
+#### fn.spread() _(es5-ext/function/#/spread)_
+
+Returns a function that applies underlying function with first list argument
+
+_f.match()(args) =def f.apply(null, args)_
+
+#### fn.toStringTokens() _(es5-ext/function/#/to-string-tokens)_
+
+Serializes function into two (arguments and body) string tokens. Result is plain object with `args` and `body` properties.
+
+### Math extensions
+
+#### acosh(x) _(es5-ext/math/acosh)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.acosh).
+
+#### asinh(x) _(es5-ext/math/asinh)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.asinh).
+
+#### atanh(x) _(es5-ext/math/atanh)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.atanh).
+
+#### cbrt(x) _(es5-ext/math/cbrt)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.cbrt).
+
+#### clz32(x) _(es5-ext/math/clz32)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.clz32).
+
+#### cosh(x) _(es5-ext/math/cosh)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.cosh).
+
+#### expm1(x) _(es5-ext/math/expm1)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.expm1).
+
+#### fround(x) _(es5-ext/math/fround)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.fround).
+
+#### hypot([…values]) _(es5-ext/math/hypot)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.hypot).
+
+#### imul(x, y) _(es5-ext/math/imul)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.imul).
+
+#### log1p(x) _(es5-ext/math/log1p)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.log1p).
+
+#### log2(x) _(es5-ext/math/log2)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.log2).
+
+#### log10(x) _(es5-ext/math/log10)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.log10).
+
+#### sign(x) _(es5-ext/math/sign)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.sign).
+
+#### sinh(x) _(es5-ext/math/sinh)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.sinh).
+
+#### tanh(x) _(es5-ext/math/tanh)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.tanh).
+
+#### trunc(x) _(es5-ext/math/trunc)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-math.trunc).
+
+### Number Constructor extensions
+
+#### EPSILON _(es5-ext/number/epsilon)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-number.epsilon).
+
+The difference between 1 and the smallest value greater than 1 that is representable as a Number value, which is approximately 2.2204460492503130808472633361816 x 10-16.
+
+#### isFinite(x) _(es5-ext/number/is-finite)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-number.isfinite).  
+Whether value is finite. Differs from global isNaN that it doesn't do type coercion.
+
+#### isInteger(x) _(es5-ext/number/is-integer)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-number.isinteger).  
+Whether value is integer.
+
+#### isNaN(x) _(es5-ext/number/is-nan)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-number.isnan).  
+Whether value is NaN. Differs from global isNaN that it doesn't do type coercion.
+
+#### isNumber(x) _(es5-ext/number/is-number)_
+
+Whether given value is number
+
+#### isSafeInteger(x) _(es5-ext/number/is-safe-integer)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-number.issafeinteger).
+
+#### MAX*SAFE_INTEGER *(es5-ext/number/max-safe-integer)\_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-number.maxsafeinteger).  
+The value of Number.MAX_SAFE_INTEGER is 9007199254740991.
+
+#### MIN*SAFE_INTEGER *(es5-ext/number/min-safe-integer)\_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-number.minsafeinteger).  
+The value of Number.MIN_SAFE_INTEGER is -9007199254740991 (253-1).
+
+#### toInteger(x) _(es5-ext/number/to-integer)_
+
+Converts value to integer
+
+#### toPosInteger(x) _(es5-ext/number/to-pos-integer)_
+
+Converts value to positive integer. If provided value is less than 0, then 0 is returned
+
+#### toUint32(x) _(es5-ext/number/to-uint32)_
+
+Converts value to unsigned 32 bit integer. This type is used for array lengths.
+See: http://www.2ality.com/2012/02/js-integers.html
+
+### Number Prototype extensions
+
+#### num.pad(length[, precision]) _(es5-ext/number/#/pad)_
+
+Pad given number with zeros. Returns string
+
+### Object Constructor extensions
+
+#### assign(target, source[, …sourcen]) _(es5-ext/object/assign)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-object.assign).  
+Extend _target_ by enumerable own properties of other objects. If properties are already set on target object, they will be overwritten.
+
+#### clear(obj) _(es5-ext/object/clear)_
+
+Remove all enumerable own properties of the object
+
+#### compact(obj) _(es5-ext/object/compact)_
+
+Returns copy of the object with all enumerable properties that have no falsy values
+
+#### compare(obj1, obj2) _(es5-ext/object/compare)_
+
+Universal cross-type compare function. To be used for e.g. array sort.
+
+#### copy(obj) _(es5-ext/object/copy)_
+
+Returns copy of the object with all enumerable properties.
+
+#### copyDeep(obj) _(es5-ext/object/copy-deep)_
+
+Returns deep copy of the object with all enumerable properties.
+
+#### count(obj) _(es5-ext/object/count)_
+
+Counts number of enumerable own properties on object
+
+#### create(obj[, properties]) _(es5-ext/object/create)_
+
+`Object.create` alternative that provides workaround for [V8 issue](http://code.google.com/p/v8/issues/detail?id=2804).
+
+When `null` is provided as a prototype, it's substituted with specially prepared object that derives from Object.prototype but has all Object.prototype properties shadowed with undefined.
+
+It's quirky solution that allows us to have plain objects with no truthy properties but with turnable prototype.
+
+Use only for objects that you plan to switch prototypes of and be aware of limitations of this workaround.
+
+#### eq(x, y) _(es5-ext/object/eq)_
+
+Whether two values are equal, using [_SameValueZero_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-samevaluezero) algorithm.
+
+#### every(obj, cb[, thisArg[, compareFn]]) _(es5-ext/object/every)_
+
+Analogous to Array.prototype.every. Returns true if every key-value pair in this object satisfies the provided testing function.  
+Optionally _compareFn_ can be provided which assures that keys are tested in given order. If provided _compareFn_ is equal to `true`, then order is alphabetical (by key).
+
+#### filter(obj, cb[, thisArg]) _(es5-ext/object/filter)_
+
+Analogous to Array.prototype.filter. Returns new object with properites for which _cb_ function returned truthy value.
+
+#### firstKey(obj) _(es5-ext/object/first-key)_
+
+Returns first enumerable key of the object, as keys are unordered by specification, it can be any key of an object.
+
+#### flatten(obj) _(es5-ext/object/flatten)_
+
+Returns new object, with flatten properties of input object
+
+_flatten({ a: { b: 1 }, c: { d: 1 } }) =def { b: 1, d: 1 }_
+
+#### forEach(obj, cb[, thisArg[, compareFn]]) _(es5-ext/object/for-each)_
+
+Analogous to Array.prototype.forEach. Calls a function for each key-value pair found in object
+Optionally _compareFn_ can be provided which assures that properties are iterated in given order. If provided _compareFn_ is equal to `true`, then order is alphabetical (by key).
+
+#### getPropertyNames() _(es5-ext/object/get-property-names)_
+
+Get all (not just own) property names of the object
+
+#### is(x, y) _(es5-ext/object/is)_
+
+Whether two values are equal, using [_SameValue_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-samevaluezero) algorithm.
+
+#### isArrayLike(x) _(es5-ext/object/is-array-like)_
+
+Whether object is array-like object
+
+#### isCopy(x, y) _(es5-ext/object/is-copy)_
+
+Two values are considered a copy of same value when all of their own enumerable properties have same values.
+
+#### isCopyDeep(x, y) _(es5-ext/object/is-copy-deep)_
+
+Deep comparision of objects
+
+#### isEmpty(obj) _(es5-ext/object/is-empty)_
+
+True if object doesn't have any own enumerable property
+
+#### isObject(arg) _(es5-ext/object/is-object)_
+
+Whether value is not primitive
+
+#### isPlainObject(arg) _(es5-ext/object/is-plain-object)_
+
+Whether object is plain object, its protototype should be Object.prototype and it cannot be host object.
+
+#### keyOf(obj, searchValue) _(es5-ext/object/key-of)_
+
+Search object for value
+
+#### keys(obj) _(es5-ext/object/keys)_
+
+[_Updated with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-object.keys).  
+ES6's version of `keys`, doesn't throw on primitive input
+
+#### map(obj, cb[, thisArg]) _(es5-ext/object/map)_
+
+Analogous to Array.prototype.map. Creates a new object with properties which values are results of calling a provided function on every key-value pair in this object.
+
+#### mapKeys(obj, cb[, thisArg]) _(es5-ext/object/map-keys)_
+
+Create new object with same values, but remapped keys
+
+#### mixin(target, source) _(es5-ext/object/mixin)_
+
+Extend _target_ by all own properties of other objects. Properties found in both objects will be overwritten (unless they're not configurable and cannot be overwritten).
+_It was for a moment part of ECMAScript 6 draft._
+
+#### mixinPrototypes(target, …source]) _(es5-ext/object/mixin-prototypes)_
+
+Extends _target_, with all source and source's prototype properties.
+Useful as an alternative for `setPrototypeOf` in environments in which it cannot be shimmed (no `__proto__` support).
+
+#### normalizeOptions(options) _(es5-ext/object/normalize-options)_
+
+Normalizes options object into flat plain object.
+
+Useful for functions in which we either need to keep options object for future reference or need to modify it for internal use.
+
+* It never returns input `options` object back (always a copy is created)
+* `options` can be undefined in such case empty plain object is returned.
+* Copies all enumerable properties found down prototype chain.
+
+#### primitiveSet([…names]) _(es5-ext/object/primitive-set)_
+
+Creates `null` prototype based plain object, and sets on it all property names provided in arguments to true.
+
+#### safeTraverse(obj[, …names]) _(es5-ext/object/safe-traverse)_
+
+Safe navigation of object properties. See http://wiki.ecmascript.org/doku.php?id=strawman:existential_operator
+
+#### serialize(value) _(es5-ext/object/serialize)_
+
+Serialize value into string. Differs from [JSON.stringify](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/JSON/stringify) that it serializes also dates, functions and regular expresssions.
+
+#### setPrototypeOf(object, proto) _(es5-ext/object/set-prototype-of)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-object.setprototypeof).  
+If native version is not provided, it depends on existence of `__proto__` functionality, if it's missing, `null` instead of function is exposed.
+
+#### some(obj, cb[, thisArg[, compareFn]]) _(es5-ext/object/some)_
+
+Analogous to Array.prototype.some Returns true if any key-value pair satisfies the provided
+testing function.  
+Optionally _compareFn_ can be provided which assures that keys are tested in given order. If provided _compareFn_ is equal to `true`, then order is alphabetical (by key).
+
+#### toArray(obj[, cb[, thisArg[, compareFn]]]) _(es5-ext/object/to-array)_
+
+Creates an array of results of calling a provided function on every key-value pair in this object.  
+Optionally _compareFn_ can be provided which assures that results are added in given order. If provided _compareFn_ is equal to `true`, then order is alphabetical (by key).
+
+#### unserialize(str) _(es5-ext/object/unserialize)_
+
+Userializes value previously serialized with [serialize](#serializevalue-es5-extobjectserialize)
+
+#### validCallable(x) _(es5-ext/object/valid-callable)_
+
+If given object is not callable throw TypeError in other case return it.
+
+#### validObject(x) _(es5-ext/object/valid-object)_
+
+Throws error if given value is not an object, otherwise it is returned.
+
+#### validValue(x) _(es5-ext/object/valid-value)_
+
+Throws error if given value is `null` or `undefined`, otherwise returns value.
+
+### RegExp Constructor extensions
+
+#### escape(str) _(es5-ext/reg-exp/escape)_
+
+Escapes string to be used in regular expression
+
+#### isRegExp(x) _(es5-ext/reg-exp/is-reg-exp)_
+
+Whether object is regular expression
+
+#### validRegExp(x) _(es5-ext/reg-exp/valid-reg-exp)_
+
+If object is regular expression it is returned, otherwise TypeError is thrown.
+
+### RegExp Prototype extensions
+
+#### re.isSticky(x) _(es5-ext/reg-exp/#/is-sticky)_
+
+Whether regular expression has `sticky` flag.
+
+It's to be used as counterpart to [regExp.sticky](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-get-regexp.prototype.sticky) if it's not implemented.
+
+#### re.isUnicode(x) _(es5-ext/reg-exp/#/is-unicode)_
+
+Whether regular expression has `unicode` flag.
+
+It's to be used as counterpart to [regExp.unicode](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-get-regexp.prototype.unicode) if it's not implemented.
+
+#### re.match(string) _(es5-ext/reg-exp/#/match)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-regexp.prototype.match).
+
+#### re.replace(string, replaceValue) _(es5-ext/reg-exp/#/replace)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-regexp.prototype.replace).
+
+#### re.search(string) _(es5-ext/reg-exp/#/search)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-regexp.prototype.search).
+
+#### re.split(string) _(es5-ext/reg-exp/#/search)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-regexp.prototype.split).
+
+#### re.sticky _(es5-ext/reg-exp/#/sticky/implement)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-regexp.prototype.sticky).  
+It's a getter, so only `implement` and `is-implemented` modules are provided.
+
+#### re.unicode _(es5-ext/reg-exp/#/unicode/implement)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-regexp.prototype.unicode).  
+It's a getter, so only `implement` and `is-implemented` modules are provided.
+
+### String Constructor extensions
+
+#### formatMethod(fMap) _(es5-ext/string/format-method)_
+
+Creates format method. It's used e.g. to create `Date.prototype.format` method
+
+#### fromCodePoint([…codePoints]) _(es5-ext/string/from-code-point)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-string.fromcodepoint)
+
+#### isString(x) _(es5-ext/string/is-string)_
+
+Whether object is string
+
+#### randomUniq() _(es5-ext/string/random-uniq)_
+
+Returns randomly generated id, with guarantee of local uniqueness (no same id will be returned twice)
+
+#### raw(callSite[, …substitutions]) _(es5-ext/string/raw)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-string.raw)
+
+### String Prototype extensions
+
+#### str.at(pos) _(es5-ext/string/#/at)_
+
+_Proposed for ECMAScript 6/7 standard, but not (yet) in a draft_
+
+Returns a string at given position in Unicode-safe manner.
+Based on [implementation by Mathias Bynens](https://github.com/mathiasbynens/String.prototype.at).
+
+#### str.camelToHyphen() _(es5-ext/string/#/camel-to-hyphen)_
+
+Convert camelCase string to hyphen separated, e.g. one-two-three -> oneTwoThree.
+Useful when converting names from js property convention into filename convention.
+
+#### str.capitalize() _(es5-ext/string/#/capitalize)_
+
+Capitalize first character of a string
+
+#### str.caseInsensitiveCompare(str) _(es5-ext/string/#/case-insensitive-compare)_
+
+Case insensitive compare
+
+#### str.codePointAt(pos) _(es5-ext/string/#/code-point-at)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-string.prototype.codepointat)
+
+Based on [implementation by Mathias Bynens](https://github.com/mathiasbynens/String.prototype.codePointAt).
+
+#### str.contains(searchString[, position]) _(es5-ext/string/#/contains)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-string.prototype.contains)
+
+Whether string contains given string.
+
+#### str.endsWith(searchString[, endPosition]) _(es5-ext/string/#/ends-with)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-string.prototype.endswith).  
+Whether strings ends with given string
+
+#### str.hyphenToCamel() _(es5-ext/string/#/hyphen-to-camel)_
+
+Convert hyphen separated string to camelCase, e.g. one-two-three -> oneTwoThree.
+Useful when converting names from filename convention to js property name convention.
+
+#### str.indent(str[, count]) _(es5-ext/string/#/indent)_
+
+Indents each line with provided _str_ (if _count_ given then _str_ is repeated _count_ times).
+
+#### str.last() _(es5-ext/string/#/last)_
+
+Return last character
+
+#### str.normalize([form]) _(es5-ext/string/#/normalize)_
+
+[_Introduced with ECMAScript 6_](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/String/normalize).  
+Returns the Unicode Normalization Form of a given string.  
+Based on Matsuza's version. Code used for integrated shim can be found at [github.com/walling/unorm](https://github.com/walling/unorm/blob/master/lib/unorm.js)
+
+#### str.pad(fill[, length]) _(es5-ext/string/#/pad)_
+
+Pad string with _fill_.
+If _length_ si given than _fill_ is reapated _length_ times.
+If _length_ is negative then pad is applied from right.
+
+#### str.repeat(n) _(es5-ext/string/#/repeat)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-string.prototype.repeat).  
+Repeat given string _n_ times
+
+#### str.plainReplace(search, replace) _(es5-ext/string/#/plain-replace)_
+
+Simple `replace` version. Doesn't support regular expressions. Replaces just first occurrence of search string. Doesn't support insert patterns, therefore it is safe to replace text with text obtained programmatically (there's no need for additional _$_ characters escape in such case).
+
+#### str.plainReplaceAll(search, replace) _(es5-ext/string/#/plain-replace-all)_
+
+Simple `replace` version. Doesn't support regular expressions. Replaces all occurrences of search string. Doesn't support insert patterns, therefore it is safe to replace text with text obtained programmatically (there's no need for additional _$_ characters escape in such case).
+
+#### str.startsWith(searchString[, position]) _(es5-ext/string/#/starts-with)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-string.prototype.startswith).  
+Whether strings starts with given string
+
+#### str[@@iterator] _(es5-ext/string/#/@@iterator)_
+
+[_Introduced with ECMAScript 6_](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-string.prototype-@@iterator).  
+Returns iterator object which traverses all string characters (with respect to unicode symbols)
+
+### Tests
+
+    $ npm test
+
+[nix-build-image]: https://semaphoreci.com/api/v1/medikoo-org/es5-ext/branches/master/shields_badge.svg
+[nix-build-url]: https://semaphoreci.com/medikoo-org/es5-ext
+[win-build-image]: https://ci.appveyor.com/api/projects/status/3jox67ksw3p8hkwh?svg=true
+[win-build-url]: https://ci.appveyor.com/project/medikoo/es5-ext
+[transpilation-image]: https://img.shields.io/badge/transpilation-free-brightgreen.svg
+[npm-image]: https://img.shields.io/npm/v/es5-ext.svg
+[npm-url]: https://www.npmjs.com/package/es5-ext
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/implement.js
new file mode 100644
index 0000000000..8073f2bc6c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/implement.js
@@ -0,0 +1,10 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, require("es6-symbol").iterator, {
+		value: require("./shim"),
+		configurable: true,
+		enumerable: false,
+		writable: true
+	});
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/index.js
new file mode 100644
index 0000000000..d937746549
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Array.prototype[require("es6-symbol").iterator] : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/is-implemented.js
new file mode 100644
index 0000000000..6445c04ea0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/is-implemented.js
@@ -0,0 +1,16 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator;
+
+module.exports = function () {
+	var arr = ["foo", 1], iterator, result;
+	if (typeof arr[iteratorSymbol] !== "function") return false;
+	iterator = arr[iteratorSymbol]();
+	if (!iterator) return false;
+	if (typeof iterator.next !== "function") return false;
+	result = iterator.next();
+	if (!result) return false;
+	if (result.value !== "foo") return false;
+	if (result.done !== false) return false;
+	return true;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/shim.js
new file mode 100644
index 0000000000..307b1c0aa1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/@@iterator/shim.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("../values/shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/_compare-by-length.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/_compare-by-length.js
new file mode 100644
index 0000000000..f1c0cacc7c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/_compare-by-length.js
@@ -0,0 +1,9 @@
+// Used internally to sort array of lists by length
+
+"use strict";
+
+var toPosInt = require("../../number/to-pos-integer");
+
+module.exports = function (arr1, arr2) {
+	return toPosInt(arr1.length) - toPosInt(arr2.length);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/binary-search.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/binary-search.js
new file mode 100644
index 0000000000..9b2c42ec5f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/binary-search.js
@@ -0,0 +1,28 @@
+"use strict";
+
+var toPosInt = require("../../number/to-pos-integer")
+  , callable = require("../../object/valid-callable")
+  , value    = require("../../object/valid-value")
+
+  , floor    = Math.floor;
+
+module.exports = function (compareFn) {
+	var length, low, high, middle;
+
+	value(this);
+	callable(compareFn);
+
+	length = toPosInt(this.length);
+	low = 0;
+	high = length - 1;
+
+	while (low <= high) {
+		middle = floor((low + high) / 2);
+		if (compareFn(this[middle]) < 0) high = middle - 1;
+		else low = middle + 1;
+	}
+
+	if (high < 0) return 0;
+	if (high >= length) return length - 1;
+	return high;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/clear.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/clear.js
new file mode 100644
index 0000000000..fd539c9b7c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/clear.js
@@ -0,0 +1,12 @@
+// Inspired by Google Closure:
+// http://closure-library.googlecode.com/svn/docs/
+// closure_goog_array_array.js.html#goog.array.clear
+
+"use strict";
+
+var value = require("../../object/valid-value");
+
+module.exports = function () {
+	value(this).length = 0;
+	return this;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/compact.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/compact.js
new file mode 100644
index 0000000000..3da1309d34
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/compact.js
@@ -0,0 +1,13 @@
+// Inspired by: http://documentcloud.github.com/underscore/#compact
+
+"use strict";
+
+var isValue = require("../../object/is-value");
+
+var filter = Array.prototype.filter;
+
+module.exports = function () {
+	return filter.call(this, function (val) {
+		return isValue(val);
+	});
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/implement.js
new file mode 100644
index 0000000000..a5a1a4090c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "concat", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/index.js
new file mode 100644
index 0000000000..8bbb7bc191
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+		? Array.prototype.concat : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/is-implemented.js
new file mode 100644
index 0000000000..2a3a9fc60c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var SubArray = require("../../_sub-array-dummy-safe");
+
+module.exports = function () {
+	return (new SubArray()).concat("foo") instanceof SubArray;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/shim.js
new file mode 100644
index 0000000000..5158dde523
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/concat/shim.js
@@ -0,0 +1,48 @@
+"use strict";
+
+var isPlainArray       = require("../../is-plain-array")
+  , toPosInt           = require("../../../number/to-pos-integer")
+  , isObject           = require("../../../object/is-object")
+  , isConcatSpreadable = require("es6-symbol").isConcatSpreadable
+  , isArray            = Array.isArray
+  , concat             = Array.prototype.concat
+  , forEach            = Array.prototype.forEach
+  , isSpreadable;
+
+isSpreadable = function (value) {
+	if (!value) return false;
+	if (!isObject(value)) return false;
+	if (value[isConcatSpreadable] !== undefined) {
+		return Boolean(value[isConcatSpreadable]);
+	}
+	return isArray(value);
+};
+
+// eslint-disable-next-line no-unused-vars
+module.exports = function (item /*, …items*/) {
+	var result;
+	if (!this || !isArray(this) || isPlainArray(this)) {
+		return concat.apply(this, arguments);
+	}
+	result = new this.constructor();
+	if (isSpreadable(this)) {
+		forEach.call(this, function (val, i) {
+			result[i] = val;
+		});
+	} else {
+		result[0] = this;
+	}
+	forEach.call(arguments, function (arg) {
+		var base;
+		if (isSpreadable(arg)) {
+			base = result.length;
+			result.length += toPosInt(arg.length);
+			forEach.call(arg, function (val, i) {
+				result[base + i] = val;
+			});
+			return;
+		}
+		result.push(arg);
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/contains.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/contains.js
new file mode 100644
index 0000000000..cde6850ece
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/contains.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var indexOf = require("./e-index-of");
+
+module.exports = function (searchElement/*, position*/) {
+	return indexOf.call(this, searchElement, arguments[1]) > -1;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/implement.js
new file mode 100644
index 0000000000..4658fcb4b2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/implement.js
@@ -0,0 +1,10 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "copyWithin", {
+		value: require("./shim"),
+		configurable: true,
+		enumerable: false,
+		writable: true
+	});
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/index.js
new file mode 100644
index 0000000000..0919b79b94
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+		? Array.prototype.copyWithin : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/is-implemented.js
new file mode 100644
index 0000000000..40c499e6dd
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var arr = [1, 2, 3, 4, 5];
+	if (typeof arr.copyWithin !== "function") return false;
+	return String(arr.copyWithin(1, 3)) === "1,4,5,4,5";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/shim.js
new file mode 100644
index 0000000000..aad220ca70
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/copy-within/shim.js
@@ -0,0 +1,45 @@
+// Taken from: https://github.com/paulmillr/es6-shim/
+
+"use strict";
+
+var toInteger         = require("../../../number/to-integer")
+  , toPosInt          = require("../../../number/to-pos-integer")
+  , validValue        = require("../../../object/valid-value")
+  , objHasOwnProperty = Object.prototype.hasOwnProperty
+  , max               = Math.max
+  , min               = Math.min;
+
+module.exports = function (target, start /*, end*/) {
+	var arr = validValue(this)
+	  , end = arguments[2]
+	  , length = toPosInt(arr.length)
+	  , to
+	  , from
+	  , fin
+	  , count
+	  , direction;
+
+	target = toInteger(target);
+	start = toInteger(start);
+	end = end === undefined ? length : toInteger(end);
+
+	to = target < 0 ? max(length + target, 0) : min(target, length);
+	from = start < 0 ? max(length + start, 0) : min(start, length);
+	fin = end < 0 ? max(length + end, 0) : min(end, length);
+	count = min(fin - from, length - to);
+	direction = 1;
+
+	if (from < to && to < from + count) {
+		direction = -1;
+		from += count - 1;
+		to += count - 1;
+	}
+	while (count > 0) {
+		if (objHasOwnProperty.call(arr, from)) arr[to] = arr[from];
+		else delete arr[from];
+		from += direction;
+		to += direction;
+		count -= 1;
+	}
+	return arr;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/diff.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/diff.js
new file mode 100644
index 0000000000..fbb1682b70
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/diff.js
@@ -0,0 +1,13 @@
+"use strict";
+
+var value    = require("../../object/valid-value")
+  , contains = require("./contains")
+  , filter   = Array.prototype.filter;
+
+module.exports = function (other) {
+	value(this);
+	value(other);
+	return filter.call(this, function (item) {
+		return !contains.call(other, item);
+	});
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/e-index-of.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/e-index-of.js
new file mode 100644
index 0000000000..8b0701177b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/e-index-of.js
@@ -0,0 +1,28 @@
+"use strict";
+
+var numberIsNaN       = require("../../number/is-nan")
+  , toPosInt          = require("../../number/to-pos-integer")
+  , value             = require("../../object/valid-value")
+  , indexOf           = Array.prototype.indexOf
+  , objHasOwnProperty = Object.prototype.hasOwnProperty
+  , abs               = Math.abs
+  , floor             = Math.floor;
+
+module.exports = function (searchElement /*, fromIndex*/) {
+	var i, length, fromIndex, val;
+	if (!numberIsNaN(searchElement)) return indexOf.apply(this, arguments);
+
+	length = toPosInt(value(this).length);
+	fromIndex = arguments[1];
+	if (isNaN(fromIndex)) fromIndex = 0;
+	else if (fromIndex >= 0) fromIndex = floor(fromIndex);
+	else fromIndex = toPosInt(this.length) - floor(abs(fromIndex));
+
+	for (i = fromIndex; i < length; ++i) {
+		if (objHasOwnProperty.call(this, i)) {
+			val = this[i];
+			if (numberIsNaN(val)) return i; // Jslint: ignore
+		}
+	}
+	return -1;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/e-last-index-of.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/e-last-index-of.js
new file mode 100644
index 0000000000..15dbe05b83
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/e-last-index-of.js
@@ -0,0 +1,31 @@
+"use strict";
+
+var numberIsNaN       = require("../../number/is-nan")
+  , toPosInt          = require("../../number/to-pos-integer")
+  , value             = require("../../object/valid-value")
+  , lastIndexOf       = Array.prototype.lastIndexOf
+  , objHasOwnProperty = Object.prototype.hasOwnProperty
+  , abs               = Math.abs
+  , floor             = Math.floor;
+
+module.exports = function (searchElement /*, fromIndex*/) {
+	var i, fromIndex, val;
+	if (!numberIsNaN(searchElement)) {
+		// Jslint: ignore
+		return lastIndexOf.apply(this, arguments);
+	}
+
+	value(this);
+	fromIndex = arguments[1];
+	if (isNaN(fromIndex)) fromIndex = toPosInt(this.length) - 1;
+	else if (fromIndex >= 0) fromIndex = floor(fromIndex);
+	else fromIndex = toPosInt(this.length) - floor(abs(fromIndex));
+
+	for (i = fromIndex; i >= 0; --i) {
+		if (objHasOwnProperty.call(this, i)) {
+			val = this[i];
+			if (numberIsNaN(val)) return i; // Jslint: ignore
+		}
+	}
+	return -1;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/implement.js
new file mode 100644
index 0000000000..acc8a111cb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "entries", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/index.js
new file mode 100644
index 0000000000..f18f7d921b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+		? Array.prototype.entries : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/is-implemented.js
new file mode 100644
index 0000000000..335f1c2097
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/is-implemented.js
@@ -0,0 +1,15 @@
+"use strict";
+
+module.exports = function () {
+	var arr = [1, "foo"], iterator, result;
+	if (typeof arr.entries !== "function") return false;
+	iterator = arr.entries();
+	if (!iterator) return false;
+	if (typeof iterator.next !== "function") return false;
+	result = iterator.next();
+	if (!result || !result.value) return false;
+	if (result.value[0] !== 0) return false;
+	if (result.value[1] !== 1) return false;
+	if (result.done !== false) return false;
+	return true;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/shim.js
new file mode 100644
index 0000000000..caa45b7a2a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/entries/shim.js
@@ -0,0 +1,6 @@
+"use strict";
+
+var ArrayIterator = require("es6-iterator/array");
+module.exports = function () {
+ return new ArrayIterator(this, "key+value");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/exclusion.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/exclusion.js
new file mode 100644
index 0000000000..41057d06ff
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/exclusion.js
@@ -0,0 +1,31 @@
+"use strict";
+
+var value    = require("../../object/valid-value")
+  , aFrom    = require("../from")
+  , toArray  = require("../to-array")
+  , contains = require("./contains")
+  , byLength = require("./_compare-by-length")
+  , filter   = Array.prototype.filter
+  , push     = Array.prototype.push;
+
+module.exports = function (/* …lists*/) {
+	var lists, seen, result;
+	if (!arguments.length) return aFrom(this);
+	push.apply(lists = [this], arguments);
+	lists.forEach(value);
+	seen = [];
+	result = [];
+	lists.sort(byLength).forEach(function (list) {
+		result = result
+			.filter(function (item) {
+				return !contains.call(list, item);
+			})
+			.concat(
+				filter.call(list, function (item) {
+					return !contains.call(seen, item);
+				})
+			);
+		push.apply(seen, toArray(list));
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/implement.js
new file mode 100644
index 0000000000..9de58b75f3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "fill", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/index.js
new file mode 100644
index 0000000000..a8272475d0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+		? Array.prototype.fill : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/is-implemented.js
new file mode 100644
index 0000000000..5d6d02e1a5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var arr = [1, 2, 3, 4, 5, 6];
+	if (typeof arr.fill !== "function") return false;
+	return String(arr.fill(-1, -3)) === "1,2,3,-1,-1,-1";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/shim.js
new file mode 100644
index 0000000000..0040bf81a9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/fill/shim.js
@@ -0,0 +1,25 @@
+// Taken from: https://github.com/paulmillr/es6-shim/
+
+"use strict";
+
+var toInteger  = require("../../../number/to-integer")
+  , toPosInt   = require("../../../number/to-pos-integer")
+  , validValue = require("../../../object/valid-value")
+  , max        = Math.max
+  , min        = Math.min;
+
+module.exports = function (value /*, start, end*/) {
+	var arr = validValue(this)
+	  , start = arguments[1]
+	  , end = arguments[2]
+	  , length = toPosInt(arr.length)
+	  , relativeStart
+	  , i;
+
+	start = start === undefined ? 0 : toInteger(start);
+	end = end === undefined ? length : toInteger(end);
+
+	relativeStart = start < 0 ? max(length + start, 0) : min(start, length);
+	for (i = relativeStart; i < length && i < end; ++i) arr[i] = value;
+	return arr;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/implement.js
new file mode 100644
index 0000000000..450257515b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "filter", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/index.js
new file mode 100644
index 0000000000..ad2082d938
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+		? Array.prototype.filter : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/is-implemented.js
new file mode 100644
index 0000000000..06de099605
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/is-implemented.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var SubArray = require("../../_sub-array-dummy-safe")
+
+  , pass = function () {
+ return true;
+};
+
+module.exports = function () {
+	return (new SubArray()).filter(pass) instanceof SubArray;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/shim.js
new file mode 100644
index 0000000000..38304e4b87
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/filter/shim.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var isPlainArray = require("../../is-plain-array")
+  , callable     = require("../../../object/valid-callable")
+  , isArray      = Array.isArray
+  , filter       = Array.prototype.filter
+  , forEach      = Array.prototype.forEach
+  , call         = Function.prototype.call;
+
+module.exports = function (callbackFn /*, thisArg*/) {
+	var result, thisArg, i;
+	if (!this || !isArray(this) || isPlainArray(this)) {
+		return filter.apply(this, arguments);
+	}
+	callable(callbackFn);
+	thisArg = arguments[1];
+	result = new this.constructor();
+	i = 0;
+	forEach.call(this, function (val, j, self) {
+		if (call.call(callbackFn, thisArg, val, j, self)) result[i++] = val;
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/implement.js
new file mode 100644
index 0000000000..4876b9e4e7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/implement.js
@@ -0,0 +1,9 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "findIndex",
+		{ value: require("./shim"),
+			configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/index.js
new file mode 100644
index 0000000000..3d505b1f5a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+		? Array.prototype.findIndex : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/is-implemented.js
new file mode 100644
index 0000000000..818c920e44
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/is-implemented.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var fn = function (value) {
+	return value > 3;
+};
+
+module.exports = function () {
+	var arr = [1, 2, 3, 4, 5, 6];
+	if (typeof arr.findIndex !== "function") return false;
+	return arr.findIndex(fn) === 3;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/shim.js
new file mode 100644
index 0000000000..bc82827ad9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find-index/shim.js
@@ -0,0 +1,26 @@
+"use strict";
+
+var callable    = require("../../../object/valid-callable")
+  , ensureValue = require("../../../object/valid-value")
+  , some        = Array.prototype.some
+  , apply       = Function.prototype.apply;
+
+module.exports = function (predicate /*, thisArg*/) {
+	var k, self;
+	self = Object(ensureValue(this));
+	callable(predicate);
+
+	return some.call(
+		self,
+		function (value, index) {
+			if (apply.call(predicate, this, arguments)) {
+				k = index;
+				return true;
+			}
+			return false;
+		},
+		arguments[1]
+	)
+		? k
+		: -1;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/implement.js
new file mode 100644
index 0000000000..d8ebc5b81a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "find", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/index.js
new file mode 100644
index 0000000000..131a71be40
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+		? Array.prototype.find : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/is-implemented.js
new file mode 100644
index 0000000000..aa278a7b5d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/is-implemented.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var fn = function (value) {
+	return value > 3;
+};
+
+module.exports = function () {
+	var arr = [1, 2, 3, 4, 5, 6];
+	if (typeof arr.find !== "function") return false;
+	return arr.find(fn) === 4;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/shim.js
new file mode 100644
index 0000000000..c45a938057
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/find/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var findIndex = require("../find-index/shim");
+
+// eslint-disable-next-line no-unused-vars
+module.exports = function (predicate /*, thisArg*/) {
+	var index = findIndex.apply(this, arguments);
+	return index === -1 ? undefined : this[index];
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/first-index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/first-index.js
new file mode 100644
index 0000000000..19bff54194
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/first-index.js
@@ -0,0 +1,15 @@
+"use strict";
+
+var toPosInt          = require("../../number/to-pos-integer")
+  , value             = require("../../object/valid-value")
+  , objHasOwnProperty = Object.prototype.hasOwnProperty;
+
+module.exports = function () {
+	var i, length;
+	if (!(length = toPosInt(value(this).length))) return null;
+	i = 0;
+	while (!objHasOwnProperty.call(this, i)) {
+		if (++i === length) return null;
+	}
+	return i;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/first.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/first.js
new file mode 100644
index 0000000000..ca76833b1c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/first.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var firstIndex = require("./first-index");
+
+module.exports = function () {
+	var i;
+	if ((i = firstIndex.call(this)) !== null) return this[i];
+	return undefined;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/flatten.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/flatten.js
new file mode 100644
index 0000000000..40167274ec
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/flatten.js
@@ -0,0 +1,40 @@
+// Stack grow safe implementation
+
+"use strict";
+
+var ensureValue       = require("../../object/valid-value")
+  , isArray           = Array.isArray
+  , objHasOwnProperty = Object.prototype.hasOwnProperty;
+
+module.exports = function () {
+	var input = ensureValue(this), index = 0, remaining, remainingIndexes, length, i, result = [];
+	// Jslint: ignore
+	main: while (input) {
+		length = input.length;
+		for (i = index; i < length; ++i) {
+			if (!objHasOwnProperty.call(input, i)) continue;
+			if (isArray(input[i])) {
+				if (i < length - 1) {
+					// eslint-disable-next-line max-depth
+					if (!remaining) {
+						remaining = [];
+						remainingIndexes = [];
+					}
+					remaining.push(input);
+					remainingIndexes.push(i + 1);
+				}
+				input = input[i];
+				index = 0;
+				continue main;
+			}
+			result.push(input[i]);
+		}
+		if (remaining) {
+			input = remaining.pop();
+			index = remainingIndexes.pop();
+		} else {
+			input = null;
+		}
+	}
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/for-each-right.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/for-each-right.js
new file mode 100644
index 0000000000..ebf076b17b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/for-each-right.js
@@ -0,0 +1,19 @@
+"use strict";
+
+var toPosInt          = require("../../number/to-pos-integer")
+  , callable          = require("../../object/valid-callable")
+  , value             = require("../../object/valid-value")
+  , objHasOwnProperty = Object.prototype.hasOwnProperty
+  , call              = Function.prototype.call;
+
+module.exports = function (cb /*, thisArg*/) {
+	var i, self, thisArg;
+
+	self = Object(value(this));
+	callable(cb);
+	thisArg = arguments[1];
+
+	for (i = toPosInt(self.length) - 1; i >= 0; --i) {
+		if (objHasOwnProperty.call(self, i)) call.call(cb, thisArg, self[i], i, self);
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/group.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/group.js
new file mode 100644
index 0000000000..711eb586a6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/group.js
@@ -0,0 +1,28 @@
+// Inspired by Underscore's groupBy:
+// http://documentcloud.github.com/underscore/#groupBy
+
+"use strict";
+
+var callable = require("../../object/valid-callable")
+  , value    = require("../../object/valid-value")
+  , forEach  = Array.prototype.forEach
+  , apply    = Function.prototype.apply;
+
+module.exports = function (cb /*, thisArg*/) {
+	var result;
+
+	value(this);
+	callable(cb);
+
+	result = Object.create(null);
+	forEach.call(
+		this,
+		function (item) {
+			var key = apply.call(cb, this, arguments);
+			if (!result[key]) result[key] = [];
+			result[key].push(item);
+		},
+		arguments[1]
+	);
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/index.js
new file mode 100644
index 0000000000..596e83b5e4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/index.js
@@ -0,0 +1,41 @@
+"use strict";
+
+module.exports = {
+	"@@iterator": require("./@@iterator"),
+	"binarySearch": require("./binary-search"),
+	"clear": require("./clear"),
+	"compact": require("./compact"),
+	"concat": require("./concat"),
+	"contains": require("./contains"),
+	"copyWithin": require("./copy-within"),
+	"diff": require("./diff"),
+	"eIndexOf": require("./e-index-of"),
+	"eLastIndexOf": require("./e-last-index-of"),
+	"entries": require("./entries"),
+	"exclusion": require("./exclusion"),
+	"fill": require("./fill"),
+	"filter": require("./filter"),
+	"find": require("./find"),
+	"findIndex": require("./find-index"),
+	"first": require("./first"),
+	"firstIndex": require("./first-index"),
+	"flatten": require("./flatten"),
+	"forEachRight": require("./for-each-right"),
+	"keys": require("./keys"),
+	"group": require("./group"),
+	"indexesOf": require("./indexes-of"),
+	"intersection": require("./intersection"),
+	"isCopy": require("./is-copy"),
+	"isEmpty": require("./is-empty"),
+	"isUniq": require("./is-uniq"),
+	"last": require("./last"),
+	"lastIndex": require("./last-index"),
+	"map": require("./map"),
+	"remove": require("./remove"),
+	"separate": require("./separate"),
+	"slice": require("./slice"),
+	"someRight": require("./some-right"),
+	"splice": require("./splice"),
+	"uniq": require("./uniq"),
+	"values": require("./values")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/indexes-of.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/indexes-of.js
new file mode 100644
index 0000000000..6c39cd924f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/indexes-of.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var indexOf = require("./e-index-of");
+
+module.exports = function (value /*, fromIndex*/) {
+	var result = [], i, fromIndex = arguments[1];
+	while ((i = indexOf.call(this, value, fromIndex)) !== -1) {
+		result.push(i);
+		fromIndex = i + 1;
+	}
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/intersection.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/intersection.js
new file mode 100644
index 0000000000..91261d5f89
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/intersection.js
@@ -0,0 +1,21 @@
+"use strict";
+
+var value    = require("../../object/valid-value")
+  , contains = require("./contains")
+  , byLength = require("./_compare-by-length")
+  , filter   = Array.prototype.filter
+  , push     = Array.prototype.push
+  , slice    = Array.prototype.slice;
+
+module.exports = function (/* …list*/) {
+	var lists;
+	if (!arguments.length) slice.call(this);
+	push.apply(lists = [this], arguments);
+	lists.forEach(value);
+	lists.sort(byLength);
+	return lists.reduce(function (list1, list2) {
+		return filter.call(list1, function (item) {
+			return contains.call(list2, item);
+		});
+	});
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/is-copy.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/is-copy.js
new file mode 100644
index 0000000000..1413b95df5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/is-copy.js
@@ -0,0 +1,21 @@
+"use strict";
+
+var toPosInt          = require("../../number/to-pos-integer")
+  , eq                = require("../../object/eq")
+  , value             = require("../../object/valid-value")
+  , objHasOwnProperty = Object.prototype.hasOwnProperty;
+
+module.exports = function (other) {
+	var i, length;
+	value(this);
+	value(other);
+	length = toPosInt(this.length);
+	if (length !== toPosInt(other.length)) return false;
+	for (i = 0; i < length; ++i) {
+		if (objHasOwnProperty.call(this, i) !== objHasOwnProperty.call(other, i)) {
+			return false;
+		}
+		if (!eq(this[i], other[i])) return false;
+	}
+	return true;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/is-empty.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/is-empty.js
new file mode 100644
index 0000000000..80a3069552
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/is-empty.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var ensureArray = require("../../object/ensure-array")
+  , firstIndex  = require("./first-index");
+
+module.exports = function () {
+	return firstIndex.call(ensureArray(this)) === null;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/is-uniq.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/is-uniq.js
new file mode 100644
index 0000000000..148a5a918b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/is-uniq.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var indexOf = require("./e-index-of")
+
+  , every = Array.prototype.every
+  , isFirst;
+
+isFirst = function (value, index) {
+	return indexOf.call(this, value) === index;
+};
+
+module.exports = function () {
+ return every.call(this, isFirst, this);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/implement.js
new file mode 100644
index 0000000000..40d0df0118
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "keys", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/index.js
new file mode 100644
index 0000000000..50a18f1976
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+		? Array.prototype.keys : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/is-implemented.js
new file mode 100644
index 0000000000..70a171f67f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/is-implemented.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function () {
+	var arr = [1, "foo"], iterator, result;
+	if (typeof arr.keys !== "function") return false;
+	iterator = arr.keys();
+	if (!iterator) return false;
+	if (typeof iterator.next !== "function") return false;
+	result = iterator.next();
+	if (!result) return false;
+	if (result.value !== 0) return false;
+	if (result.done !== false) return false;
+	return true;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/shim.js
new file mode 100644
index 0000000000..c3c68c6d42
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/keys/shim.js
@@ -0,0 +1,6 @@
+"use strict";
+
+var ArrayIterator = require("es6-iterator/array");
+module.exports = function () {
+ return new ArrayIterator(this, "key");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/last-index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/last-index.js
new file mode 100644
index 0000000000..74aaba46c4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/last-index.js
@@ -0,0 +1,15 @@
+"use strict";
+
+var toPosInt          = require("../../number/to-pos-integer")
+  , value             = require("../../object/valid-value")
+  , objHasOwnProperty = Object.prototype.hasOwnProperty;
+
+module.exports = function () {
+	var i, length;
+	if (!(length = toPosInt(value(this).length))) return null;
+	i = length - 1;
+	while (!objHasOwnProperty.call(this, i)) {
+		if (--i === -1) return null;
+	}
+	return i;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/last.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/last.js
new file mode 100644
index 0000000000..38bb359b38
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/last.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var lastIndex = require("./last-index");
+
+module.exports = function () {
+	var i;
+	if ((i = lastIndex.call(this)) !== null) return this[i];
+	return undefined;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/implement.js
new file mode 100644
index 0000000000..a6d1d9001c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "map", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/index.js
new file mode 100644
index 0000000000..101c0649ee
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+		? Array.prototype.map : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/is-implemented.js
new file mode 100644
index 0000000000..24ab9084fc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var identity = require("../../../function/identity")
+  , SubArray = require("../../_sub-array-dummy-safe");
+
+module.exports = function () {
+	return (new SubArray()).map(identity) instanceof SubArray;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/shim.js
new file mode 100644
index 0000000000..6d8cc1fb63
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/map/shim.js
@@ -0,0 +1,21 @@
+"use strict";
+
+var isPlainArray = require("../../is-plain-array")
+  , callable     = require("../../../object/valid-callable")
+
+  , isArray = Array.isArray, map = Array.prototype.map
+  , forEach = Array.prototype.forEach, call = Function.prototype.call;
+
+module.exports = function (callbackFn/*, thisArg*/) {
+	var result, thisArg;
+	if (!this || !isArray(this) || isPlainArray(this)) {
+		return map.apply(this, arguments);
+	}
+	callable(callbackFn);
+	thisArg = arguments[1];
+	result = new this.constructor(this.length);
+	forEach.call(this, function (val, i, self) {
+		result[i] = call.call(callbackFn, thisArg, val, i, self);
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/remove.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/remove.js
new file mode 100644
index 0000000000..6a8a08676d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/remove.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var indexOf = require("./e-index-of")
+  , forEach = Array.prototype.forEach
+  , splice  = Array.prototype.splice;
+
+// eslint-disable-next-line no-unused-vars
+module.exports = function (itemToRemove /*, …item*/) {
+	forEach.call(
+		arguments,
+		function (item) {
+			var index = indexOf.call(this, item);
+			if (index !== -1) splice.call(this, index, 1);
+		},
+		this
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/separate.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/separate.js
new file mode 100644
index 0000000000..35e1cc5ac4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/separate.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var forEach = Array.prototype.forEach;
+
+module.exports = function (sep) {
+	var result = [];
+	forEach.call(this, function (val) {
+		result.push(val, sep);
+	});
+	result.pop();
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/implement.js
new file mode 100644
index 0000000000..568e87a1dc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "slice", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/index.js
new file mode 100644
index 0000000000..c80ee35954
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Array.prototype.slice : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/is-implemented.js
new file mode 100644
index 0000000000..47904c2099
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var SubArray = require("../../_sub-array-dummy-safe");
+
+module.exports = function () {
+	return (new SubArray()).slice() instanceof SubArray;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/shim.js
new file mode 100644
index 0000000000..ff13085b3b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/slice/shim.js
@@ -0,0 +1,36 @@
+"use strict";
+
+var toInteger         = require("../../../number/to-integer")
+  , toPosInt          = require("../../../number/to-pos-integer")
+  , isPlainArray      = require("../../is-plain-array")
+  , isArray           = Array.isArray
+  , slice             = Array.prototype.slice
+  , objHasOwnProperty = Object.prototype.hasOwnProperty
+  , max               = Math.max;
+
+module.exports = function (start, end) {
+	var length, result, i;
+	if (!this || !isArray(this) || isPlainArray(this)) {
+		return slice.apply(this, arguments);
+	}
+	length = toPosInt(this.length);
+	start = toInteger(start);
+	if (start < 0) start = max(length + start, 0);
+	else if (start > length) start = length;
+	if (end === undefined) {
+		end = length;
+	} else {
+		end = toInteger(end);
+		if (end < 0) end = max(length + end, 0);
+		else if (end > length) end = length;
+	}
+	if (start > end) start = end;
+	result = new this.constructor(end - start);
+	i = 0;
+	while (start !== end) {
+		if (objHasOwnProperty.call(this, start)) result[i] = this[start];
+		++i;
+		++start;
+	}
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/some-right.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/some-right.js
new file mode 100644
index 0000000000..d9a665fc28
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/some-right.js
@@ -0,0 +1,21 @@
+"use strict";
+
+var toPosInt          = require("../../number/to-pos-integer")
+  , callable          = require("../../object/valid-callable")
+  , value             = require("../../object/valid-value")
+  , objHasOwnProperty = Object.prototype.hasOwnProperty
+  , call              = Function.prototype.call;
+
+module.exports = function (cb /*, thisArg*/) {
+	var i, self, thisArg;
+	self = Object(value(this));
+	callable(cb);
+	thisArg = arguments[1];
+
+	for (i = toPosInt(self.length) - 1; i >= 0; --i) {
+		if (objHasOwnProperty.call(self, i) && call.call(cb, thisArg, self[i], i, self)) {
+			return true;
+		}
+	}
+	return false;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/implement.js
new file mode 100644
index 0000000000..1e1682b0cd
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "splice", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/index.js
new file mode 100644
index 0000000000..e5fda9512b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Array.prototype.splice : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/is-implemented.js
new file mode 100644
index 0000000000..afbb95a6df
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var SubArray = require("../../_sub-array-dummy-safe");
+
+module.exports = function () {
+	return (new SubArray()).splice(0) instanceof SubArray;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/shim.js
new file mode 100644
index 0000000000..dc8d837b83
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/splice/shim.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var isPlainArray = require("../../is-plain-array")
+  , isArray      = Array.isArray
+  , splice       = Array.prototype.splice
+  , forEach      = Array.prototype.forEach;
+
+// eslint-disable-next-line no-unused-vars
+module.exports = function (start, deleteCount /*, …items*/) {
+	var arr = splice.apply(this, arguments), result;
+	if (!this || !isArray(this) || isPlainArray(this)) return arr;
+	result = new this.constructor(arr.length);
+	forEach.call(arr, function (val, i) {
+		result[i] = val;
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/uniq.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/uniq.js
new file mode 100644
index 0000000000..944ce9334c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/uniq.js
@@ -0,0 +1,15 @@
+"use strict";
+
+var indexOf = require("./e-index-of")
+
+  , filter = Array.prototype.filter
+
+  , isFirst;
+
+isFirst = function (value, index) {
+	return indexOf.call(this, value) === index;
+};
+
+module.exports = function () {
+ return filter.call(this, isFirst, this);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/implement.js
new file mode 100644
index 0000000000..b43e9f646e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array.prototype, "values", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/index.js
new file mode 100644
index 0000000000..30a50bae7e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./is-implemented")() ? Array.prototype.values : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/is-implemented.js
new file mode 100644
index 0000000000..8b72568a16
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/is-implemented.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function () {
+	var arr = ["foo", 1], iterator, result;
+	if (typeof arr.values !== "function") return false;
+	iterator = arr.values();
+	if (!iterator) return false;
+	if (typeof iterator.next !== "function") return false;
+	result = iterator.next();
+	if (!result) return false;
+	if (result.value !== "foo") return false;
+	if (result.done !== false) return false;
+	return true;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/shim.js
new file mode 100644
index 0000000000..e46a052612
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/#/values/shim.js
@@ -0,0 +1,6 @@
+"use strict";
+
+var ArrayIterator = require("es6-iterator/array");
+module.exports = function () {
+ return new ArrayIterator(this, "value");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/_is-extensible.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/_is-extensible.js
new file mode 100644
index 0000000000..a9e8ee7941
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/_is-extensible.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = (function () {
+	var SubArray = require("./_sub-array-dummy"), arr;
+
+	if (!SubArray) return false;
+	arr = new SubArray();
+	if (!Array.isArray(arr)) return false;
+	if (!(arr instanceof SubArray)) return false;
+
+	arr[34] = "foo";
+	return arr.length === 35;
+}());
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/_sub-array-dummy-safe.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/_sub-array-dummy-safe.js
new file mode 100644
index 0000000000..80e3b3c58b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/_sub-array-dummy-safe.js
@@ -0,0 +1,25 @@
+"use strict";
+
+var setPrototypeOf = require("../object/set-prototype-of")
+  , isExtensible   = require("./_is-extensible");
+
+module.exports = (function () {
+	var SubArray;
+
+	if (isExtensible) return require("./_sub-array-dummy");
+
+	if (!setPrototypeOf) return null;
+	SubArray = function () {
+		var arr = Array.apply(this, arguments);
+		setPrototypeOf(arr, SubArray.prototype);
+		return arr;
+	};
+	setPrototypeOf(SubArray, Array);
+	SubArray.prototype = Object.create(Array.prototype, {
+		constructor: { value: SubArray,
+enumerable: false,
+writable: true,
+			configurable: true }
+	});
+	return SubArray;
+}());
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/_sub-array-dummy.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/_sub-array-dummy.js
new file mode 100644
index 0000000000..cf11152224
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/_sub-array-dummy.js
@@ -0,0 +1,20 @@
+"use strict";
+
+var setPrototypeOf = require("../object/set-prototype-of");
+
+module.exports = (function () {
+	var SubArray;
+
+	if (!setPrototypeOf) return null;
+	SubArray = function () {
+ Array.apply(this, arguments);
+};
+	setPrototypeOf(SubArray, Array);
+	SubArray.prototype = Object.create(Array.prototype, {
+		constructor: { value: SubArray,
+enumerable: false,
+writable: true,
+			configurable: true }
+	});
+	return SubArray;
+}());
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/from/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/from/implement.js
new file mode 100644
index 0000000000..41172242e4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/from/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array, "from", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/from/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/from/index.js
new file mode 100644
index 0000000000..ca4492d118
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/from/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Array.from
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/from/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/from/is-implemented.js
new file mode 100644
index 0000000000..3567c8766d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/from/is-implemented.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function () {
+	var from = Array.from, arr, result;
+	if (typeof from !== "function") return false;
+	arr = ["raz", "dwa"];
+	result = from(arr);
+	return Boolean(result && (result !== arr) && (result[1] === "dwa"));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/from/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/from/shim.js
new file mode 100644
index 0000000000..8928181ef7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/from/shim.js
@@ -0,0 +1,119 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator
+  , isArguments    = require("../../function/is-arguments")
+  , isFunction     = require("../../function/is-function")
+  , toPosInt       = require("../../number/to-pos-integer")
+  , callable       = require("../../object/valid-callable")
+  , validValue     = require("../../object/valid-value")
+  , isValue        = require("../../object/is-value")
+  , isString       = require("../../string/is-string")
+  , isArray        = Array.isArray
+  , call           = Function.prototype.call
+  , desc           = { configurable: true, enumerable: true, writable: true, value: null }
+  , defineProperty = Object.defineProperty;
+
+// eslint-disable-next-line complexity
+module.exports = function (arrayLike /*, mapFn, thisArg*/) {
+	var mapFn = arguments[1]
+	  , thisArg = arguments[2]
+	  , Context
+	  , i
+	  , j
+	  , arr
+	  , length
+	  , code
+	  , iterator
+	  , result
+	  , getIterator
+	  , value;
+
+	arrayLike = Object(validValue(arrayLike));
+
+	if (isValue(mapFn)) callable(mapFn);
+	if (!this || this === Array || !isFunction(this)) {
+		// Result: Plain array
+		if (!mapFn) {
+			if (isArguments(arrayLike)) {
+				// Source: Arguments
+				length = arrayLike.length;
+				if (length !== 1) return Array.apply(null, arrayLike);
+				arr = new Array(1);
+				arr[0] = arrayLike[0];
+				return arr;
+			}
+			if (isArray(arrayLike)) {
+				// Source: Array
+				arr = new Array(length = arrayLike.length);
+				for (i = 0; i < length; ++i) arr[i] = arrayLike[i];
+				return arr;
+			}
+		}
+		arr = [];
+	} else {
+		// Result: Non plain array
+		Context = this;
+	}
+
+	if (!isArray(arrayLike)) {
+		if ((getIterator = arrayLike[iteratorSymbol]) !== undefined) {
+			// Source: Iterator
+			iterator = callable(getIterator).call(arrayLike);
+			if (Context) arr = new Context();
+			result = iterator.next();
+			i = 0;
+			while (!result.done) {
+				value = mapFn ? call.call(mapFn, thisArg, result.value, i) : result.value;
+				if (Context) {
+					desc.value = value;
+					defineProperty(arr, i, desc);
+				} else {
+					arr[i] = value;
+				}
+				result = iterator.next();
+				++i;
+			}
+			length = i;
+		} else if (isString(arrayLike)) {
+			// Source: String
+			length = arrayLike.length;
+			if (Context) arr = new Context();
+			for (i = 0, j = 0; i < length; ++i) {
+				value = arrayLike[i];
+				if (i + 1 < length) {
+					code = value.charCodeAt(0);
+					// eslint-disable-next-line max-depth
+					if (code >= 0xd800 && code <= 0xdbff) value += arrayLike[++i];
+				}
+				value = mapFn ? call.call(mapFn, thisArg, value, j) : value;
+				if (Context) {
+					desc.value = value;
+					defineProperty(arr, j, desc);
+				} else {
+					arr[j] = value;
+				}
+				++j;
+			}
+			length = j;
+		}
+	}
+	if (length === undefined) {
+		// Source: array or array-like
+		length = toPosInt(arrayLike.length);
+		if (Context) arr = new Context(length);
+		for (i = 0; i < length; ++i) {
+			value = mapFn ? call.call(mapFn, thisArg, arrayLike[i], i) : arrayLike[i];
+			if (Context) {
+				desc.value = value;
+				defineProperty(arr, i, desc);
+			} else {
+				arr[i] = value;
+			}
+		}
+	}
+	if (Context) {
+		desc.value = null;
+		arr.length = length;
+	}
+	return arr;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/generate.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/generate.js
new file mode 100644
index 0000000000..42b693035a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/generate.js
@@ -0,0 +1,18 @@
+"use strict";
+
+var toPosInt = require("../number/to-pos-integer")
+  , value    = require("../object/valid-value")
+  , slice    = Array.prototype.slice;
+
+module.exports = function (length /*, …fill*/) {
+	var arr, currentLength;
+	length = toPosInt(value(length));
+	if (length === 0) return [];
+
+	arr = arguments.length < 2 ? [undefined] : slice.call(arguments, 1, 1 + length);
+
+	while ((currentLength = arr.length) < length) {
+		arr = arr.concat(arr.slice(0, length - currentLength));
+	}
+	return arr;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/index.js
new file mode 100644
index 0000000000..49ff58ee4f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/index.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = {
+	"#": require("./#"),
+	"from": require("./from"),
+	"generate": require("./generate"),
+	"isPlainArray": require("./is-plain-array"),
+	"of": require("./of"),
+	"toArray": require("./to-array"),
+	"validArray": require("./valid-array")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/is-plain-array.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/is-plain-array.js
new file mode 100644
index 0000000000..ca3d25bb9b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/is-plain-array.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var isArray = Array.isArray, getPrototypeOf = Object.getPrototypeOf;
+
+module.exports = function (obj) {
+	var proto;
+	if (!obj || !isArray(obj)) return false;
+	proto = getPrototypeOf(obj);
+	if (!isArray(proto)) return false;
+	return !isArray(getPrototypeOf(proto));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/of/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/of/implement.js
new file mode 100644
index 0000000000..92f8f3e306
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/of/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Array, "of", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/of/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/of/index.js
new file mode 100644
index 0000000000..43ab3f6275
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/of/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Array.of
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/of/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/of/is-implemented.js
new file mode 100644
index 0000000000..20b80c2075
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/of/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = function () {
+	var of = Array.of, result;
+	if (typeof of !== "function") return false;
+	result = of("foo", "bar");
+	return Boolean(result && (result[1] === "bar"));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/of/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/of/shim.js
new file mode 100644
index 0000000000..6cc9c38334
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/of/shim.js
@@ -0,0 +1,19 @@
+"use strict";
+
+var isFunction     = require("../../function/is-function")
+  , slice          = Array.prototype.slice
+  , defineProperty = Object.defineProperty
+  , desc           = { configurable: true, enumerable: true, writable: true, value: null };
+
+module.exports = function (/* …items*/) {
+	var result, i, length;
+	if (!this || this === Array || !isFunction(this)) return slice.call(arguments);
+	result = new this(length = arguments.length);
+	for (i = 0; i < length; ++i) {
+		desc.value = arguments[i];
+		defineProperty(result, i, desc);
+	}
+	desc.value = null;
+	result.length = length;
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/to-array.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/to-array.js
new file mode 100644
index 0000000000..2078b7a3a7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/to-array.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var from = require("./from")
+
+  , isArray = Array.isArray;
+
+module.exports = function (arrayLike) {
+	return isArray(arrayLike) ? arrayLike : from(arrayLike);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/array/valid-array.js b/kbase-extension/static/ext_packages/igv/es5-ext/array/valid-array.js
new file mode 100644
index 0000000000..1e58c39a3f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/array/valid-array.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isArray = Array.isArray;
+
+module.exports = function (value) {
+	if (isArray(value)) return value;
+	throw new TypeError(value + " is not an array");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/boolean/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/boolean/index.js
new file mode 100644
index 0000000000..ffd3fd253b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/boolean/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = {
+	isBoolean: require("./is-boolean")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/boolean/is-boolean.js b/kbase-extension/static/ext_packages/igv/es5-ext/boolean/is-boolean.js
new file mode 100644
index 0000000000..394845f6cf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/boolean/is-boolean.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var objToString = Object.prototype.toString, id = objToString.call(true);
+
+module.exports = function (value) {
+	return (
+		typeof value === "boolean" ||
+		(typeof value === "object" && (value instanceof Boolean || objToString.call(value) === id))
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/#/copy.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/copy.js
new file mode 100644
index 0000000000..9638a6539d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/copy.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var getTime = Date.prototype.getTime;
+
+module.exports = function () {
+ return new Date(getTime.call(this));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/#/days-in-month.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/days-in-month.js
new file mode 100644
index 0000000000..8e8ca4d4fe
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/days-in-month.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var getMonth = Date.prototype.getMonth;
+
+module.exports = function () {
+	switch (getMonth.call(this)) {
+	case 1:
+		return this.getFullYear() % 4 ? 28 : 29;
+	case 3:
+	case 5:
+	case 8:
+	case 10:
+		return 30;
+	default:
+		return 31;
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/#/floor-day.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/floor-day.js
new file mode 100644
index 0000000000..db696d38e7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/floor-day.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var setHours = Date.prototype.setHours;
+
+module.exports = function () {
+	setHours.call(this, 0, 0, 0, 0);
+	return this;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/#/floor-month.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/floor-month.js
new file mode 100644
index 0000000000..c9c0460ba5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/floor-month.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var floorDay = require("./floor-day");
+
+module.exports = function () {
+	floorDay.call(this).setDate(1);
+	return this;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/#/floor-year.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/floor-year.js
new file mode 100644
index 0000000000..e9b6f0fe71
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/floor-year.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var floorMonth = require("./floor-month");
+
+module.exports = function () {
+	floorMonth.call(this).setMonth(0);
+	return this;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/#/format.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/format.js
new file mode 100644
index 0000000000..519d77c4a6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/format.js
@@ -0,0 +1,38 @@
+/* eslint id-length: "off" */
+
+"use strict";
+
+var pad  = require("../../number/#/pad")
+  , date = require("../valid-date")
+  , format;
+
+format = require("../../string/format-method")({
+	Y: function () {
+		return String(this.getFullYear());
+	},
+	y: function () {
+		return String(this.getFullYear()).slice(-2);
+	},
+	m: function () {
+		return pad.call(this.getMonth() + 1, 2);
+	},
+	d: function () {
+		return pad.call(this.getDate(), 2);
+	},
+	H: function () {
+		return pad.call(this.getHours(), 2);
+	},
+	M: function () {
+		return pad.call(this.getMinutes(), 2);
+	},
+	S: function () {
+		return pad.call(this.getSeconds(), 2);
+	},
+	L: function () {
+		return pad.call(this.getMilliseconds(), 3);
+	}
+});
+
+module.exports = function (pattern) {
+	return format.call(date(this), pattern);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/#/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/index.js
new file mode 100644
index 0000000000..1781e21808
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/#/index.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = {
+	copy: require("./copy"),
+	daysInMonth: require("./days-in-month"),
+	floorDay: require("./floor-day"),
+	floorMonth: require("./floor-month"),
+	floorYear: require("./floor-year"),
+	format: require("./format")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/ensure-time-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/ensure-time-value.js
new file mode 100644
index 0000000000..09f5afcf7e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/ensure-time-value.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var safeToString = require("../safe-to-string")
+  , toInteger    = require("../number/to-integer")
+  , isTimeValue  = require("./is-time-value");
+
+module.exports = function (value) {
+	if (isTimeValue(value)) return toInteger(value);
+	throw new TypeError(safeToString(value) + " is not a valid time value");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/index.js
new file mode 100644
index 0000000000..c143149754
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/index.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = {
+	"#": require("./#"),
+	"ensureTimeValue": require("./ensure-time-value"),
+	"isDate": require("./is-date"),
+	"isTimeValue": require("./is-time-value"),
+	"validDate": require("./valid-date")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/is-date.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/is-date.js
new file mode 100644
index 0000000000..f45bde469d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/is-date.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var objToString = Object.prototype.toString, id = objToString.call(new Date());
+
+module.exports = function (value) {
+	return (
+		(value && !isNaN(value) && (value instanceof Date || objToString.call(value) === id)) ||
+		false
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/is-time-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/is-time-value.js
new file mode 100644
index 0000000000..4240fec5e3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/is-time-value.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (value) {
+	try {
+		value = Number(value);
+	} catch (e) {
+		return false;
+	}
+	if (isNaN(value)) return false;
+	if (Math.abs(value) > 8.64e16) return false;
+	return true;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/date/valid-date.js b/kbase-extension/static/ext_packages/igv/es5-ext/date/valid-date.js
new file mode 100644
index 0000000000..0c73dc5d35
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/date/valid-date.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isDate = require("./is-date");
+
+module.exports = function (value) {
+	if (!isDate(value)) throw new TypeError(value + " is not valid Date object");
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/error/#/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/error/#/index.js
new file mode 100644
index 0000000000..ac9a4306c4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/error/#/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = {
+	throw: require("./throw")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/error/#/throw.js b/kbase-extension/static/ext_packages/igv/es5-ext/error/#/throw.js
new file mode 100644
index 0000000000..3fe6bb4c8b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/error/#/throw.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var error = require("../valid-error");
+
+module.exports = function () {
+ throw error(this);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/error/custom.js b/kbase-extension/static/ext_packages/igv/es5-ext/error/custom.js
new file mode 100644
index 0000000000..0e4c8cb1f4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/error/custom.js
@@ -0,0 +1,20 @@
+"use strict";
+
+var assign            = require("../object/assign")
+  , isObject          = require("../object/is-object")
+  , isValue           = require("../object/is-value")
+  , captureStackTrace = Error.captureStackTrace;
+
+exports = module.exports = function (message /*, code, ext*/) {
+	var err = new Error(message), code = arguments[1], ext = arguments[2];
+	if (!isValue(ext)) {
+		if (isObject(code)) {
+			ext = code;
+			code = null;
+		}
+	}
+	if (isValue(ext)) assign(err, ext);
+	if (isValue(code)) err.code = code;
+	if (captureStackTrace) captureStackTrace(err, exports);
+	return err;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/error/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/error/index.js
new file mode 100644
index 0000000000..cb7054a272
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/error/index.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = {
+	"#": require("./#"),
+	"custom": require("./custom"),
+	"isError": require("./is-error"),
+	"validError": require("./valid-error")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/error/is-error.js b/kbase-extension/static/ext_packages/igv/es5-ext/error/is-error.js
new file mode 100644
index 0000000000..aad67ed9a9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/error/is-error.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var objToString = Object.prototype.toString, id = objToString.call(new Error());
+
+module.exports = function (value) {
+	return (value && (value instanceof Error || objToString.call(value) === id)) || false;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/error/valid-error.js b/kbase-extension/static/ext_packages/igv/es5-ext/error/valid-error.js
new file mode 100644
index 0000000000..432f7ba291
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/error/valid-error.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isError = require("./is-error");
+
+module.exports = function (value) {
+	if (!isError(value)) throw new TypeError(value + " is not an Error object");
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/#/compose.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/compose.js
new file mode 100644
index 0000000000..0897517832
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/compose.js
@@ -0,0 +1,22 @@
+"use strict";
+
+var callable = require("../../object/valid-callable")
+  , aFrom    = require("../../array/from")
+  , apply    = Function.prototype.apply
+  , call     = Function.prototype.call
+  , callFn   = function (arg, fn) {
+	return call.call(fn, this, arg);
+};
+
+module.exports = function (fn /*, …fnn*/) {
+	var fns, first;
+	if (!fn) callable(fn);
+	fns = [this].concat(aFrom(arguments));
+	fns.forEach(callable);
+	fns = fns.reverse();
+	first = fns[0];
+	fns = fns.slice(1);
+	return function (argIgnored) {
+		return fns.reduce(callFn, apply.call(first, this, arguments));
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/#/copy.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/copy.js
new file mode 100644
index 0000000000..f0403b304b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/copy.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var mixin         = require("../../object/mixin")
+  , validFunction = require("../valid-function")
+  , re            = /^\s*function\s*([\0-')-\uffff]+)*\s*\(([\0-(*-\uffff]*)\)\s*\{/;
+
+module.exports = function () {
+	var match = String(validFunction(this)).match(re), fn;
+
+	// eslint-disable-next-line no-new-func
+	fn = new Function(
+		"fn",
+		"return function " +
+			match[1].trim() +
+			"(" +
+			match[2] +
+			") { return fn.apply(this, arguments); };"
+	)(this);
+	try {
+		mixin(fn, this);
+	} catch (ignore) {}
+	return fn;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/#/curry.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/curry.js
new file mode 100644
index 0000000000..cc1e14a5a5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/curry.js
@@ -0,0 +1,24 @@
+"use strict";
+
+var toPosInt     = require("../../number/to-pos-integer")
+  , callable     = require("../../object/valid-callable")
+  , defineLength = require("../_define-length")
+
+  , slice = Array.prototype.slice, apply = Function.prototype.apply
+  , curry;
+
+curry = function self(fn, length, preArgs) {
+	return defineLength(function () {
+		var args = preArgs
+				? preArgs.concat(slice.call(arguments, 0, length - preArgs.length))
+				: slice.call(arguments, 0, length);
+		return args.length === length ? apply.call(fn, this, args)
+				: self(fn, length, args);
+	}, preArgs ? length - preArgs.length : length);
+};
+
+module.exports = function (/* Length*/) {
+	var length = arguments[0];
+	return curry(callable(this),
+		isNaN(length) ? toPosInt(this.length) : toPosInt(length));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/#/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/index.js
new file mode 100644
index 0000000000..02ae9f491e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/index.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = {
+	compose: require("./compose"),
+	copy: require("./copy"),
+	curry: require("./curry"),
+	lock: require("./lock"),
+	microtaskDelay: require("./microtask-delay"),
+	not: require("./not"),
+	partial: require("./partial"),
+	spread: require("./spread"),
+	toStringTokens: require("./to-string-tokens")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/#/lock.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/lock.js
new file mode 100644
index 0000000000..dcd93bb105
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/lock.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var callable = require("../../object/valid-callable")
+
+  , apply    = Function.prototype.apply;
+
+module.exports = function (/* …args*/) {
+	var fn = callable(this)
+	  , args = arguments;
+
+	return function () {
+ return apply.call(fn, this, args);
+};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/#/microtask-delay.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/microtask-delay.js
new file mode 100644
index 0000000000..89d47be561
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/microtask-delay.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var ensurePlainFunction = require("../../object/ensure-plain-function")
+  , defineLength        = require("../_define-length")
+  , nextTick            = require("next-tick");
+
+var apply = Function.prototype.apply;
+
+module.exports = function () {
+	var src = ensurePlainFunction(this);
+	return defineLength(function () {
+		nextTick(apply.bind(src, this, arguments));
+	}, this.length);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/#/not.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/not.js
new file mode 100644
index 0000000000..82d64def78
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/not.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var callable     = require("../../object/valid-callable")
+  , defineLength = require("../_define-length")
+
+  , apply = Function.prototype.apply;
+
+module.exports = function () {
+	var fn = callable(this);
+
+	return defineLength(function () {
+		return !apply.call(fn, this, arguments);
+	}, fn.length);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/#/partial.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/partial.js
new file mode 100644
index 0000000000..1734b1355b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/partial.js
@@ -0,0 +1,16 @@
+"use strict";
+
+var callable     = require("../../object/valid-callable")
+  , aFrom        = require("../../array/from")
+  , defineLength = require("../_define-length")
+
+  , apply = Function.prototype.apply;
+
+module.exports = function (/* …args*/) {
+	var fn = callable(this)
+	  , args = aFrom(arguments);
+
+	return defineLength(function () {
+		return apply.call(fn, this, args.concat(aFrom(arguments)));
+	}, fn.length - args.length);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/#/spread.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/spread.js
new file mode 100644
index 0000000000..755553b4e6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/spread.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var callable = require("../../object/valid-callable")
+
+  , apply = Function.prototype.apply;
+
+module.exports = function () {
+	var fn = callable(this);
+	return function (args) {
+ return apply.call(fn, this, args);
+};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/#/to-string-tokens.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/to-string-tokens.js
new file mode 100644
index 0000000000..4ce026a56d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/#/to-string-tokens.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var validFunction = require("../valid-function");
+
+var re1 = /^\s*function[\0-')-\uffff]*\(([\0-(*-\uffff]*)\)\s*\{([\0-\uffff]*)\}\s*$/
+  , re2 = /^\s*\(?([\0-'*-\uffff]*)\)?\s*=>\s*(\{?[\0-\uffff]*\}?)\s*$/;
+
+module.exports = function () {
+	var str = String(validFunction(this)), data = str.match(re1);
+	if (!data) {
+		data = str.match(re2);
+		if (!data) throw new Error("Unrecognized string format");
+		data[1] = data[1].trim();
+		if (data[2][0] === "{") data[2] = data[2].trim().slice(1, -1);
+	}
+	return { args: data[1], body: data[2] };
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/_define-length.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/_define-length.js
new file mode 100644
index 0000000000..13749d3bbf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/_define-length.js
@@ -0,0 +1,56 @@
+"use strict";
+
+var toPosInt = require("../number/to-pos-integer");
+
+var test = function (arg1, arg2) {
+	return arg2;
+};
+
+var desc, defineProperty, generate, mixin;
+
+try {
+	Object.defineProperty(test, "length", {
+		configurable: true,
+		writable: false,
+		enumerable: false,
+		value: 1
+	});
+} catch (ignore) {}
+
+if (test.length === 1) {
+	// ES6
+	desc = { configurable: true, writable: false, enumerable: false };
+	defineProperty = Object.defineProperty;
+	module.exports = function (fn, length) {
+		length = toPosInt(length);
+		if (fn.length === length) return fn;
+		desc.value = length;
+		return defineProperty(fn, "length", desc);
+	};
+} else {
+	mixin = require("../object/mixin");
+	generate = (function () {
+		var cache = [];
+		return function (length) {
+			var args, i = 0;
+			if (cache[length]) return cache[length];
+			args = [];
+			while (length--) args.push("a" + (++i).toString(36));
+			// eslint-disable-next-line no-new-func
+			return new Function(
+				"fn",
+				"return function (" + args.join(", ") + ") { return fn.apply(this, arguments); };"
+			);
+		};
+	}());
+	module.exports = function (src, length) {
+		var target;
+		length = toPosInt(length);
+		if (src.length === length) return src;
+		target = generate(length)(src);
+		try {
+			mixin(target, src);
+		} catch (ignore) {}
+		return target;
+	};
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/constant.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/constant.js
new file mode 100644
index 0000000000..c41435d572
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/constant.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (value) {
+	return function () {
+		return value;
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/identity.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/identity.js
new file mode 100644
index 0000000000..01a5aadf5d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/identity.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (value) {
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/index.js
new file mode 100644
index 0000000000..1574fbbbe9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/index.js
@@ -0,0 +1,15 @@
+// Export all modules.
+
+"use strict";
+
+module.exports = {
+	"#": require("./#"),
+	"constant": require("./constant"),
+	"identity": require("./identity"),
+	"invoke": require("./invoke"),
+	"isArguments": require("./is-arguments"),
+	"isFunction": require("./is-function"),
+	"noop": require("./noop"),
+	"pluck": require("./pluck"),
+	"validFunction": require("./valid-function")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/invoke.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/invoke.js
new file mode 100644
index 0000000000..c3d23f2d63
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/invoke.js
@@ -0,0 +1,15 @@
+"use strict";
+
+var isCallable = require("../object/is-callable")
+  , value      = require("../object/valid-value")
+
+  , slice = Array.prototype.slice, apply = Function.prototype.apply;
+
+module.exports = function (name/*, …args*/) {
+	var args = slice.call(arguments, 1), isFn = isCallable(name);
+	return function (obj) {
+		value(obj);
+		return apply.call(isFn ? name : obj[name], obj,
+			args.concat(slice.call(arguments, 1)));
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/is-arguments.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/is-arguments.js
new file mode 100644
index 0000000000..f4bf40608c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/is-arguments.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var objToString = Object.prototype.toString
+  , id = objToString.call(
+	(function () {
+		return arguments;
+	})()
+);
+
+module.exports = function (value) {
+	return objToString.call(value) === id;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/is-function.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/is-function.js
new file mode 100644
index 0000000000..d3d92f4ed0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/is-function.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var objToString = Object.prototype.toString, id = objToString.call(require("./noop"));
+
+module.exports = function (value) {
+	return typeof value === "function" && objToString.call(value) === id;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/noop.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/noop.js
new file mode 100644
index 0000000000..6174f03311
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/noop.js
@@ -0,0 +1,4 @@
+"use strict";
+
+// eslint-disable-next-line no-empty-function
+module.exports = function () {};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/pluck.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/pluck.js
new file mode 100644
index 0000000000..8507128ace
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/pluck.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var value = require("../object/valid-value");
+
+module.exports = function (name) {
+	return function (obj) {
+		return value(obj)[name];
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/function/valid-function.js b/kbase-extension/static/ext_packages/igv/es5-ext/function/valid-function.js
new file mode 100644
index 0000000000..060bd64534
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/function/valid-function.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isFunction = require("./is-function");
+
+module.exports = function (value) {
+	if (!isFunction(value)) throw new TypeError(value + " is not a function");
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/global.js b/kbase-extension/static/ext_packages/igv/es5-ext/global.js
new file mode 100644
index 0000000000..d77579c57e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/global.js
@@ -0,0 +1,5 @@
+/* eslint strict: "off" */
+
+module.exports = (function () {
+	return this;
+}());
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/index.js
new file mode 100644
index 0000000000..0919764ec2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/index.js
@@ -0,0 +1,22 @@
+"use strict";
+
+module.exports = {
+	global: require("./global"),
+	optionalChaining: require("./optional-chaining"),
+	safeToString: require("./safe-to-string"),
+	toShortStringRepresentation: require("./to-short-string-representation"),
+
+	array: require("./array"),
+	boolean: require("./boolean"),
+	date: require("./date"),
+	error: require("./error"),
+	function: require("./function"),
+	iterable: require("./iterable"),
+	json: require("./json"),
+	math: require("./math"),
+	number: require("./number"),
+	object: require("./object"),
+	promise: require("./promise"),
+	regExp: require("./reg-exp"),
+	string: require("./string")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/iterable/for-each.js b/kbase-extension/static/ext_packages/igv/es5-ext/iterable/for-each.js
new file mode 100644
index 0000000000..2840e952dc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/iterable/for-each.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var forOf      = require("es6-iterator/for-of")
+  , isIterable = require("es6-iterator/is-iterable")
+  , iterable   = require("./validate")
+
+  , forEach = Array.prototype.forEach;
+
+module.exports = function (target, cb/*, thisArg*/) {
+	if (isIterable(iterable(target))) forOf(target, cb, arguments[2]);
+	else forEach.call(target, cb, arguments[2]);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/iterable/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/iterable/index.js
new file mode 100644
index 0000000000..4b898fc8c3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/iterable/index.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = {
+	forEach: require("./for-each"),
+	is: require("./is"),
+	validate: require("./validate"),
+	validateObject: require("./validate-object")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/iterable/is.js b/kbase-extension/static/ext_packages/igv/es5-ext/iterable/is.js
new file mode 100644
index 0000000000..aa5a9b9e11
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/iterable/is.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator
+  , isValue        = require("../object/is-value")
+  , isArrayLike    = require("../object/is-array-like");
+
+module.exports = function (value) {
+	if (!isValue(value)) return false;
+	if (typeof value[iteratorSymbol] === "function") return true;
+	return isArrayLike(value);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/iterable/validate-object.js b/kbase-extension/static/ext_packages/igv/es5-ext/iterable/validate-object.js
new file mode 100644
index 0000000000..26e622b576
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/iterable/validate-object.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var isObject = require("../object/is-object")
+  , is       = require("./is");
+
+module.exports = function (value) {
+	if (is(value) && isObject(value)) return value;
+	throw new TypeError(value + " is not an iterable or array-like object");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/iterable/validate.js b/kbase-extension/static/ext_packages/igv/es5-ext/iterable/validate.js
new file mode 100644
index 0000000000..94a91c4710
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/iterable/validate.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var is = require("./is");
+
+module.exports = function (value) {
+	if (is(value)) return value;
+	throw new TypeError(value + " is not an iterable or array-like");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/json/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/json/index.js
new file mode 100644
index 0000000000..14b25cd641
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/json/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = {
+	safeStringify: require("./safe-stringify")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/json/safe-stringify.js b/kbase-extension/static/ext_packages/igv/es5-ext/json/safe-stringify.js
new file mode 100644
index 0000000000..2154f6c01a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/json/safe-stringify.js
@@ -0,0 +1,41 @@
+"use strict";
+
+var compact   = require("../array/#/compact")
+  , isObject  = require("../object/is-object")
+  , toArray   = require("../object/to-array")
+  , isArray   = Array.isArray
+  , stringify = JSON.stringify;
+
+module.exports = function self(value /*, replacer, space*/) {
+	var replacer = arguments[1], space = arguments[2];
+	try {
+		return stringify(value, replacer, space);
+	} catch (e) {
+		if (!isObject(value)) return null;
+		if (typeof value.toJSON === "function") return null;
+		if (isArray(value)) {
+			return (
+				"[" +
+				compact.call(
+					value.map(function (item) {
+						return self(item, replacer, space);
+					})
+				) +
+				"]"
+			);
+		}
+		return (
+			"{" +
+			compact
+				.call(
+					toArray(value, function (item, key) {
+						item = self(item, replacer, space);
+						if (!item) return null;
+						return stringify(key) + ":" + item;
+					})
+				)
+				.join(",") +
+			"}"
+		);
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/_decimal-adjust.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/_decimal-adjust.js
new file mode 100644
index 0000000000..fd0b0025a8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/_decimal-adjust.js
@@ -0,0 +1,29 @@
+// Credit:
+// https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Math/round
+// #Decimal_rounding
+
+"use strict";
+
+var isValue       = require("../object/is-value")
+  , ensureInteger = require("../object/ensure-integer");
+
+var split = String.prototype.split;
+
+module.exports = function (type) {
+	return function (value/*, exp*/) {
+		value = Number(value);
+		var exp = arguments[1];
+		if (isValue(exp)) exp = ensureInteger(exp);
+		if (!value) return value;
+		if (!exp) return Math[type](value);
+		if (!isFinite(value)) return value;
+
+		// Shift
+		var tokens = split.call(value, "e");
+		value = Math[type](tokens[0] + "e" + ((tokens[1] || 0) - exp));
+
+		// Shift back
+		tokens = value.toString().split("e");
+		return Number(tokens[0] + "e" + (Number(tokens[1] || 0) + exp));
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/_pack-ieee754.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/_pack-ieee754.js
new file mode 100644
index 0000000000..b77bc8d402
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/_pack-ieee754.js
@@ -0,0 +1,88 @@
+/* eslint no-bitwise: "off" */
+// Credit: https://github.com/paulmillr/es6-shim/
+
+"use strict";
+
+var abs = Math.abs
+  , floor = Math.floor
+  , log = Math.log
+  , min = Math.min
+  , pow = Math.pow
+  , LN2 = Math.LN2
+  , roundToEven;
+
+roundToEven = function (num) {
+	var whole = floor(num), fraction = num - whole;
+	if (fraction < 0.5) return whole;
+	if (fraction > 0.5) return whole + 1;
+	return whole % 2 ? whole + 1 : whole;
+};
+
+// eslint-disable-next-line max-statements
+module.exports = function (value, ebits, fbits) {
+	var bias = (1 << (ebits - 1)) - 1, sign, e, fraction, i, bits, str, bytes;
+
+	// Compute sign, exponent, fraction
+	if (isNaN(value)) {
+		// NaN
+		// http://dev.w3.org/2006/webapi/WebIDL/#es-type-mapping
+		e = (1 << ebits) - 1;
+		fraction = pow(2, fbits - 1);
+		sign = 0;
+	} else if (value === Infinity || value === -Infinity) {
+		e = (1 << ebits) - 1;
+		fraction = 0;
+		sign = value < 0 ? 1 : 0;
+	} else if (value === 0) {
+		e = 0;
+		fraction = 0;
+		sign = 1 / value === -Infinity ? 1 : 0;
+	} else {
+		sign = value < 0;
+		value = abs(value);
+
+		if (value >= pow(2, 1 - bias)) {
+			e = min(floor(log(value) / LN2), 1023);
+			fraction = roundToEven(value / pow(2, e) * pow(2, fbits));
+			if (fraction / pow(2, fbits) >= 2) {
+				e += 1;
+				fraction = 1;
+			}
+			if (e > bias) {
+				// Overflow
+				e = (1 << ebits) - 1;
+				fraction = 0;
+			} else {
+				// Normal
+				e += bias;
+				fraction -= pow(2, fbits);
+			}
+		} else {
+			// Subnormal
+			e = 0;
+			fraction = roundToEven(value / pow(2, 1 - bias - fbits));
+		}
+	}
+
+	// Pack sign, exponent, fraction
+	bits = [];
+	for (i = fbits; i; i -= 1) {
+		bits.push(fraction % 2 ? 1 : 0);
+		fraction = floor(fraction / 2);
+	}
+	for (i = ebits; i; i -= 1) {
+		bits.push(e % 2 ? 1 : 0);
+		e = floor(e / 2);
+	}
+	bits.push(sign ? 1 : 0);
+	bits.reverse();
+	str = bits.join("");
+
+	// Bits to bytes
+	bytes = [];
+	while (str.length) {
+		bytes.push(parseInt(str.substring(0, 8), 2));
+		str = str.substring(8);
+	}
+	return bytes;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/_unpack-ieee754.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/_unpack-ieee754.js
new file mode 100644
index 0000000000..83fa9475ed
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/_unpack-ieee754.js
@@ -0,0 +1,33 @@
+/* eslint no-bitwise: "off" */
+// Credit: https://github.com/paulmillr/es6-shim/
+
+"use strict";
+
+var pow = Math.pow;
+
+module.exports = function (bytes, ebits, fbits) {
+	// Bytes to bits
+	var bits = [], i, j, bit, str, bias, sign, e, fraction;
+
+	for (i = bytes.length; i; i -= 1) {
+		bit = bytes[i - 1];
+		for (j = 8; j; j -= 1) {
+			bits.push(bit % 2 ? 1 : 0);
+			bit >>= 1;
+		}
+	}
+	bits.reverse();
+	str = bits.join("");
+
+	// Unpack sign, exponent, fraction
+	bias = (1 << (ebits - 1)) - 1;
+	sign = parseInt(str.substring(0, 1), 2) ? -1 : 1;
+	e = parseInt(str.substring(1, 1 + ebits), 2);
+	fraction = parseInt(str.substring(1 + ebits), 2);
+
+	// Produce number
+	if (e === (1 << ebits) - 1) return fraction === 0 ? sign * Infinity : NaN;
+	if (e > 0) return sign * pow(2, e - bias) * (1 + fraction / pow(2, fbits));
+	if (fraction !== 0) return sign * pow(2, -(bias - 1)) * (fraction / pow(2, fbits));
+	return sign < 0 ? -0 : 0;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/implement.js
new file mode 100644
index 0000000000..ea75c7d132
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "acosh", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/index.js
new file mode 100644
index 0000000000..160f6b9923
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.acosh
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/is-implemented.js
new file mode 100644
index 0000000000..2e97301365
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var acosh = Math.acosh;
+	if (typeof acosh !== "function") return false;
+	return acosh(2) === 1.3169578969248166;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/shim.js
new file mode 100644
index 0000000000..3e632ffbad
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/acosh/shim.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var log = Math.log, sqrt = Math.sqrt;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value < 1) return NaN;
+	if (value === 1) return 0;
+	if (value === Infinity) return value;
+	return log(value + sqrt(value * value - 1));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/implement.js
new file mode 100644
index 0000000000..efa6704ec4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "asinh", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/index.js
new file mode 100644
index 0000000000..b5fb120f2a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.asinh
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/is-implemented.js
new file mode 100644
index 0000000000..a7e0f20f82
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var asinh = Math.asinh;
+	if (typeof asinh !== "function") return false;
+	return asinh(2) === 1.4436354751788103;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/shim.js
new file mode 100644
index 0000000000..30ce2e4d69
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/asinh/shim.js
@@ -0,0 +1,15 @@
+"use strict";
+
+var log = Math.log, sqrt = Math.sqrt;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value === 0) return value;
+	if (!isFinite(value)) return value;
+	if (value < 0) {
+		value = -value;
+		return -log(value + sqrt(value * value + 1));
+	}
+	return log(value + sqrt(value * value + 1));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/implement.js
new file mode 100644
index 0000000000..47d5cc22ac
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "atanh", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/index.js
new file mode 100644
index 0000000000..51fbcd66af
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.atanh
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/is-implemented.js
new file mode 100644
index 0000000000..4787c4fa69
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var atanh = Math.atanh;
+	if (typeof atanh !== "function") return false;
+	return Math.round(atanh(0.5) * 1e15) === 549306144334055;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/shim.js
new file mode 100644
index 0000000000..9383e9714a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/atanh/shim.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var log = Math.log;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value < -1) return NaN;
+	if (value > 1) return NaN;
+	if (value === -1) return -Infinity;
+	if (value === 1) return Infinity;
+	if (value === 0) return value;
+	return 0.5 * log((1 + value) / (1 - value));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/implement.js
new file mode 100644
index 0000000000..f5adbab0d5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "cbrt", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/index.js
new file mode 100644
index 0000000000..47806407c3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.cbrt
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/is-implemented.js
new file mode 100644
index 0000000000..a8ac0db26c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var cbrt = Math.cbrt;
+	if (typeof cbrt !== "function") return false;
+	return cbrt(2) === 1.2599210498948732;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/shim.js
new file mode 100644
index 0000000000..8871c552f1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/cbrt/shim.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var pow = Math.pow;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value === 0) return value;
+	if (!isFinite(value)) return value;
+	if (value < 0) return -pow(-value, 1 / 3);
+	return pow(value, 1 / 3);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/ceil-10.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/ceil-10.js
new file mode 100644
index 0000000000..351221f6cd
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/ceil-10.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./_decimal-adjust")("ceil");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/implement.js
new file mode 100644
index 0000000000..10b4a41d0f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "clz32", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/index.js
new file mode 100644
index 0000000000..a16ee33a5d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.clz32
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/is-implemented.js
new file mode 100644
index 0000000000..ee6d882882
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var clz32 = Math.clz32;
+	if (typeof clz32 !== "function") return false;
+	return clz32(1000) === 22;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/shim.js
new file mode 100644
index 0000000000..2b526c2c2f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/clz32/shim.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (value) {
+	// eslint-disable-next-line no-bitwise
+	value >>>= 0;
+	return value ? 32 - value.toString(2).length : 32;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/implement.js
new file mode 100644
index 0000000000..6f42b38796
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "cosh", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/index.js
new file mode 100644
index 0000000000..5ed349afc1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.cosh
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/is-implemented.js
new file mode 100644
index 0000000000..7173054c7e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var cosh = Math.cosh;
+	if (typeof cosh !== "function") return false;
+	return cosh(1) === 1.5430806348152437;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/shim.js
new file mode 100644
index 0000000000..c762c84dae
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/cosh/shim.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var exp = Math.exp;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value === 0) return 1;
+	if (!isFinite(value)) return Infinity;
+	return (exp(value) + exp(-value)) / 2;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/implement.js
new file mode 100644
index 0000000000..8c9d81113d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "expm1", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/index.js
new file mode 100644
index 0000000000..5b5dff6b21
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.expm1
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/is-implemented.js
new file mode 100644
index 0000000000..dfd056e0ac
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var expm1 = Math.expm1;
+	if (typeof expm1 !== "function") return false;
+	return expm1(1).toFixed(15) === "1.718281828459045";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/shim.js
new file mode 100644
index 0000000000..ce737b3bcc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/expm1/shim.js
@@ -0,0 +1,16 @@
+// Thanks: https://github.com/monolithed/ECMAScript-6
+
+"use strict";
+
+var exp = Math.exp;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value === 0) return value;
+	if (value === Infinity) return Infinity;
+	if (value === -Infinity) return -1;
+
+	if (value > -1.0e-6 && value < 1.0e-6) return value + value * value / 2;
+	return exp(value) - 1;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/floor-10.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/floor-10.js
new file mode 100644
index 0000000000..3cb0c11906
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/floor-10.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./_decimal-adjust")("floor");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/implement.js
new file mode 100644
index 0000000000..b54d2fca6c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "fround", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/index.js
new file mode 100644
index 0000000000..db409e8373
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.fround
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/is-implemented.js
new file mode 100644
index 0000000000..ad2b705dfc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var fround = Math.fround;
+	if (typeof fround !== "function") return false;
+	return fround(1.337) === 1.3370000123977661;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/shim.js
new file mode 100644
index 0000000000..bfbc54c6c8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/fround/shim.js
@@ -0,0 +1,35 @@
+/* global Float32Array */
+
+// Credit: https://github.com/paulmillr/es6-shim/blob/master/es6-shim.js
+
+"use strict";
+
+var toFloat32;
+
+if (typeof Float32Array === "undefined") {
+	toFloat32 = (function () {
+		var pack   = require("../_pack-ieee754")
+		  , unpack = require("../_unpack-ieee754");
+
+		return function (value) {
+			return unpack(pack(value, 8, 23), 8, 23);
+		};
+	}());
+} else {
+	toFloat32 = (function () {
+		var float32Array = new Float32Array(1);
+		return function (num) {
+			float32Array[0] = num;
+			return float32Array[0];
+		};
+	}());
+}
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value === 0) return value;
+	if (!isFinite(value)) return value;
+
+	return toFloat32(value);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/implement.js
new file mode 100644
index 0000000000..e2b3928b37
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "hypot", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/index.js
new file mode 100644
index 0000000000..a030a41988
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.hypot
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/is-implemented.js
new file mode 100644
index 0000000000..d317bc7e57
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var hypot = Math.hypot;
+	if (typeof hypot !== "function") return false;
+	return hypot(3, 4) === 5;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/shim.js
new file mode 100644
index 0000000000..2a92b17154
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/hypot/shim.js
@@ -0,0 +1,43 @@
+// Thanks for hints: https://github.com/paulmillr/es6-shim
+
+"use strict";
+
+var some = Array.prototype.some
+  , abs = Math.abs
+  , sqrt = Math.sqrt
+  , compare = function (val1, val2) {
+	return val2 - val1;
+}
+  , divide = function (value) {
+	return value / this;
+}
+  , add = function (sum, number) {
+	return sum + number * number;
+};
+
+// eslint-disable-next-line no-unused-vars
+module.exports = function (val1, val2 /*, …valn*/) {
+	var result, numbers;
+	if (!arguments.length) return 0;
+	some.call(arguments, function (val) {
+		if (isNaN(val)) {
+			result = NaN;
+			return false;
+		}
+		if (!isFinite(val)) {
+			result = Infinity;
+			return true;
+		}
+		if (result !== undefined) return false;
+		val = Number(val);
+		if (val === 0) return false;
+		if (numbers) numbers.push(abs(val));
+		else numbers = [abs(val)];
+		return false;
+	});
+	if (result !== undefined) return result;
+	if (!numbers) return 0;
+
+	numbers.sort(compare);
+	return numbers[0] * sqrt(numbers.map(divide, numbers[0]).reduce(add, 0));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/implement.js
new file mode 100644
index 0000000000..bff57735b5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "imul", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/index.js
new file mode 100644
index 0000000000..a756d5949e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.imul
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/is-implemented.js
new file mode 100644
index 0000000000..0f32919840
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var imul = Math.imul;
+	if (typeof imul !== "function") return false;
+	return imul(-1, 8) === -8;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/shim.js
new file mode 100644
index 0000000000..a14e5895b3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/imul/shim.js
@@ -0,0 +1,17 @@
+/* eslint no-bitwise: "off" */
+
+// Thanks: https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference
+//         /Global_Objects/Math/imul
+
+"use strict";
+
+module.exports = function (val1, val2) {
+	var xh = (val1 >>> 16) & 0xffff
+	  , xl = val1 & 0xffff
+	  , yh = (val2 >>> 16) & 0xffff
+	  , yl = val2 & 0xffff;
+
+	// The shift by 0 fixes the sign on the high part
+	// the final |0 converts the unsigned value into a signed value
+	return (xl * yl + ((xh * yl + xl * yh) << 16 >>> 0)) | 0;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/index.js
new file mode 100644
index 0000000000..a59269cc6e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/index.js
@@ -0,0 +1,24 @@
+"use strict";
+
+module.exports = {
+	acosh: require("./acosh"),
+	asinh: require("./asinh"),
+	atanh: require("./atanh"),
+	cbrt: require("./cbrt"),
+	ceil10: require("./ceil-10"),
+	clz32: require("./clz32"),
+	cosh: require("./cosh"),
+	expm1: require("./expm1"),
+	floor10: require("./floor-10"),
+	fround: require("./fround"),
+	hypot: require("./hypot"),
+	imul: require("./imul"),
+	log10: require("./log10"),
+	log2: require("./log2"),
+	log1p: require("./log1p"),
+	round10: require("./round-10"),
+	sign: require("./sign"),
+	sinh: require("./sinh"),
+	tanh: require("./tanh"),
+	trunc: require("./trunc")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/implement.js
new file mode 100644
index 0000000000..669cee8870
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "log10", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/index.js
new file mode 100644
index 0000000000..bc2ec48169
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.log10
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/is-implemented.js
new file mode 100644
index 0000000000..f2217597d2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var log10 = Math.log10;
+	if (typeof log10 !== "function") return false;
+	return log10(2) === 0.3010299956639812;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/shim.js
new file mode 100644
index 0000000000..e8599a260e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log10/shim.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var log = Math.log, LOG10E = Math.LOG10E;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value < 0) return NaN;
+	if (value === 0) return -Infinity;
+	if (value === 1) return 0;
+	if (value === Infinity) return Infinity;
+
+	return log(value) * LOG10E;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/implement.js
new file mode 100644
index 0000000000..36fcee6199
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "log1p", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/index.js
new file mode 100644
index 0000000000..41c67364f5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.log1p
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/is-implemented.js
new file mode 100644
index 0000000000..7626ab47ef
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var log1p = Math.log1p;
+	if (typeof log1p !== "function") return false;
+	return log1p(1) === 0.6931471805599453;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/shim.js
new file mode 100644
index 0000000000..7c6f227346
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log1p/shim.js
@@ -0,0 +1,17 @@
+// Thanks: https://github.com/monolithed/ECMAScript-6/blob/master/ES6.js
+
+"use strict";
+
+var log = Math.log;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value < -1) return NaN;
+	if (value === -1) return -Infinity;
+	if (value === 0) return value;
+	if (value === Infinity) return Infinity;
+
+	if (value > -1.0e-8 && value < 1.0e-8) return value - value * value / 2;
+	return log(1 + value);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/implement.js
new file mode 100644
index 0000000000..f1c04e0961
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "log2", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/index.js
new file mode 100644
index 0000000000..d319caec41
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.log2
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/is-implemented.js
new file mode 100644
index 0000000000..c70963f66c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var log2 = Math.log2;
+	if (typeof log2 !== "function") return false;
+	return log2(3).toFixed(15) === "1.584962500721156";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/shim.js
new file mode 100644
index 0000000000..51fcdae903
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/log2/shim.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var log = Math.log, LOG2E = Math.LOG2E;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value < 0) return NaN;
+	if (value === 0) return -Infinity;
+	if (value === 1) return 0;
+	if (value === Infinity) return Infinity;
+
+	return log(value) * LOG2E;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/round-10.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/round-10.js
new file mode 100644
index 0000000000..228c2351ed
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/round-10.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./_decimal-adjust")("round");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/implement.js
new file mode 100644
index 0000000000..bc7da14d15
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "sign", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/index.js
new file mode 100644
index 0000000000..9f2865643b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.sign
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/is-implemented.js
new file mode 100644
index 0000000000..23ff83a6cf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var sign = Math.sign;
+	if (typeof sign !== "function") return false;
+	return (sign(10) === 1) && (sign(-20) === -1);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/shim.js
new file mode 100644
index 0000000000..760c69d128
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/sign/shim.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (value) {
+	value = Number(value);
+	if (isNaN(value) || (value === 0)) return value;
+	return value > 0 ? 1 : -1;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/implement.js
new file mode 100644
index 0000000000..cc4c40bcb1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "sinh", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/index.js
new file mode 100644
index 0000000000..2c43dce175
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.sinh
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/is-implemented.js
new file mode 100644
index 0000000000..5e4ee40c3a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var sinh = Math.sinh;
+	if (typeof sinh !== "function") return false;
+	return (sinh(1) === 1.1752011936438014) && (sinh(Number.MIN_VALUE) === 5e-324);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/shim.js
new file mode 100644
index 0000000000..fc6a04776a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/sinh/shim.js
@@ -0,0 +1,18 @@
+// Parts of implementation taken from es6-shim project
+// See: https://github.com/paulmillr/es6-shim/blob/master/es6-shim.js
+
+"use strict";
+
+var expm1 = require("../expm1")
+  , abs   = Math.abs
+  , exp   = Math.exp
+  , e     = Math.E;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value === 0) return value;
+	if (!isFinite(value)) return value;
+	if (abs(value) < 1) return (expm1(value) - expm1(-value)) / 2;
+	return (exp(value - 1) - exp(-value - 1)) * e / 2;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/implement.js
new file mode 100644
index 0000000000..9e30d10d1c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "tanh", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/index.js
new file mode 100644
index 0000000000..7c45d98870
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.tanh
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/is-implemented.js
new file mode 100644
index 0000000000..b17a1bc42f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var tanh = Math.tanh;
+	if (typeof tanh !== "function") return false;
+	return (tanh(1) === 0.7615941559557649) && (tanh(Number.MAX_VALUE) === 1);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/shim.js
new file mode 100644
index 0000000000..974dd7cda0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/tanh/shim.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var exp = Math.exp;
+
+module.exports = function (value) {
+	var num1, num2;
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value === 0) return value;
+	if (value === Infinity) return 1;
+	if (value === -Infinity) return -1;
+	num1 = exp(value);
+	if (num1 === Infinity) return 1;
+	num2 = exp(-value);
+	if (num2 === Infinity) return -1;
+	return (num1 - num2) / (num1 + num2);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/implement.js
new file mode 100644
index 0000000000..1ecc124cda
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Math, "trunc", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/index.js
new file mode 100644
index 0000000000..94c02691a9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Math.trunc
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/is-implemented.js
new file mode 100644
index 0000000000..b1507352ec
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var trunc = Math.trunc;
+	if (typeof trunc !== "function") return false;
+	return (trunc(13.67) === 13) && (trunc(-13.67) === -13);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/shim.js
new file mode 100644
index 0000000000..bf6ac8ccef
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/math/trunc/shim.js
@@ -0,0 +1,13 @@
+"use strict";
+
+var floor = Math.floor;
+
+module.exports = function (value) {
+	if (isNaN(value)) return NaN;
+	value = Number(value);
+	if (value === 0) return value;
+	if (value === Infinity) return Infinity;
+	if (value === -Infinity) return -Infinity;
+	if (value > 0) return floor(value);
+	return -floor(-value);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/#/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/#/index.js
new file mode 100644
index 0000000000..e6e21c309c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/#/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = {
+	pad: require("./pad")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/#/pad.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/#/pad.js
new file mode 100644
index 0000000000..26fe4b63ad
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/#/pad.js
@@ -0,0 +1,15 @@
+"use strict";
+
+var pad      = require("../../string/#/pad")
+  , toPosInt = require("../to-pos-integer")
+
+  , toFixed = Number.prototype.toFixed;
+
+module.exports = function (length/*, precision*/) {
+	var precision;
+	length = toPosInt(length);
+	precision = toPosInt(arguments[1]);
+
+	return pad.call(precision ? toFixed.call(this, precision) : this,
+		"0", length + (precision ? 1 + precision : 0));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/epsilon/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/epsilon/implement.js
new file mode 100644
index 0000000000..fa19131a89
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/epsilon/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Number, "EPSILON", { value: require("./"),
+		configurable: false,
+enumerable: false,
+writable: false });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/epsilon/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/epsilon/index.js
new file mode 100644
index 0000000000..12e8a8d2c6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/epsilon/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = 2.220446049250313e-16;
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/epsilon/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/epsilon/is-implemented.js
new file mode 100644
index 0000000000..1cfbded214
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/epsilon/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function () {
+	return typeof Number.EPSILON === "number";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/index.js
new file mode 100644
index 0000000000..b57ff1505f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/index.js
@@ -0,0 +1,17 @@
+"use strict";
+
+module.exports = {
+	"#": require("./#"),
+	"EPSILON": require("./epsilon"),
+	"isFinite": require("./is-finite"),
+	"isInteger": require("./is-integer"),
+	"isNaN": require("./is-nan"),
+	"isNatural": require("./is-natural"),
+	"isNumber": require("./is-number"),
+	"isSafeInteger": require("./is-safe-integer"),
+	"MAX_SAFE_INTEGER": require("./max-safe-integer"),
+	"MIN_SAFE_INTEGER": require("./min-safe-integer"),
+	"toInteger": require("./to-integer"),
+	"toPosInteger": require("./to-pos-integer"),
+	"toUint32": require("./to-uint32")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/implement.js
new file mode 100644
index 0000000000..17f67cbc49
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Number, "isFinite", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/index.js
new file mode 100644
index 0000000000..dbeaf7b851
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Number.isFinite
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/is-implemented.js
new file mode 100644
index 0000000000..eadd050788
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var numberIsFinite = Number.isFinite;
+	if (typeof numberIsFinite !== "function") return false;
+	return !numberIsFinite("23") && numberIsFinite(34) && !numberIsFinite(Infinity);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/shim.js
new file mode 100644
index 0000000000..72dd7aae6e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-finite/shim.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (value) {
+	return (typeof value === "number") && isFinite(value);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/implement.js
new file mode 100644
index 0000000000..dd1f3bd0e8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Number, "isInteger", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/index.js
new file mode 100644
index 0000000000..71cde73a01
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Number.isInteger
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/is-implemented.js
new file mode 100644
index 0000000000..f357c7178b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var isInteger = Number.isInteger;
+	if (typeof isInteger !== "function") return false;
+	return !isInteger("23") && isInteger(34) && !isInteger(32.34);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/shim.js
new file mode 100644
index 0000000000..12058b5a46
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-integer/shim.js
@@ -0,0 +1,8 @@
+// Credit: http://www.2ality.com/2014/05/is-integer.html
+
+"use strict";
+
+module.exports = function (value) {
+	if (typeof value !== "number") return false;
+	return value % 1 === 0;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/implement.js
new file mode 100644
index 0000000000..2f9126c900
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Number, "isNaN", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/index.js
new file mode 100644
index 0000000000..9128d5c013
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Number.isNaN
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/is-implemented.js
new file mode 100644
index 0000000000..756838a413
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var numberIsNaN = Number.isNaN;
+	if (typeof numberIsNaN !== "function") return false;
+	return !numberIsNaN({}) && numberIsNaN(NaN) && !numberIsNaN(34);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/shim.js
new file mode 100644
index 0000000000..b5730d1d64
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-nan/shim.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (value) {
+	// eslint-disable-next-line no-self-compare
+	return value !== value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-natural.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-natural.js
new file mode 100644
index 0000000000..329966e32f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-natural.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isInteger = require("./is-integer");
+
+module.exports = function (num) {
+ return isInteger(num) && (num >= 0);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-number.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-number.js
new file mode 100644
index 0000000000..3da0712d2c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-number.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var objToString = Object.prototype.toString, id = objToString.call(1);
+
+module.exports = function (value) {
+	return (
+		typeof value === "number" ||
+		(value instanceof Number || (typeof value === "object" && objToString.call(value) === id))
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/implement.js
new file mode 100644
index 0000000000..6092db75fa
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Number, "isSafeInteger", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/index.js
new file mode 100644
index 0000000000..d4314df154
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Number.isSafeInteger
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/is-implemented.js
new file mode 100644
index 0000000000..36b0db5611
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = function () {
+	var isSafeInteger = Number.isSafeInteger;
+	if (typeof isSafeInteger !== "function") return false;
+	return !isSafeInteger("23") && isSafeInteger(34232322323) &&
+			!isSafeInteger(9007199254740992);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/shim.js
new file mode 100644
index 0000000000..de7f22f37f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/is-safe-integer/shim.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var isInteger = require("../is-integer/shim")
+  , maxValue  = require("../max-safe-integer")
+
+  , abs = Math.abs;
+
+module.exports = function (value) {
+	if (!isInteger(value)) return false;
+	return abs(value) <= maxValue;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/max-safe-integer/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/max-safe-integer/implement.js
new file mode 100644
index 0000000000..be5a2933ab
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/max-safe-integer/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Number, "MAX_SAFE_INTEGER", { value: require("./"),
+		configurable: false,
+enumerable: false,
+writable: false });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/max-safe-integer/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/max-safe-integer/index.js
new file mode 100644
index 0000000000..75a41e7c05
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/max-safe-integer/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = Math.pow(2, 53) - 1;
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/max-safe-integer/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/max-safe-integer/is-implemented.js
new file mode 100644
index 0000000000..09a7da7504
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/max-safe-integer/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function () {
+	return typeof Number.MAX_SAFE_INTEGER === "number";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/min-safe-integer/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/min-safe-integer/implement.js
new file mode 100644
index 0000000000..77d0274543
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/min-safe-integer/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Number, "MIN_SAFE_INTEGER", { value: require("./"),
+		configurable: false,
+enumerable: false,
+writable: false });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/min-safe-integer/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/min-safe-integer/index.js
new file mode 100644
index 0000000000..cde4514628
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/min-safe-integer/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = -(Math.pow(2, 53) - 1);
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/min-safe-integer/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/min-safe-integer/is-implemented.js
new file mode 100644
index 0000000000..7b63253fc3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/min-safe-integer/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function () {
+	return typeof Number.MIN_SAFE_INTEGER === "number";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/to-integer.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/to-integer.js
new file mode 100644
index 0000000000..524395ce7c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/to-integer.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var sign = require("../math/sign")
+
+  , abs = Math.abs, floor = Math.floor;
+
+module.exports = function (value) {
+	if (isNaN(value)) return 0;
+	value = Number(value);
+	if ((value === 0) || !isFinite(value)) return value;
+	return sign(value) * floor(abs(value));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/to-pos-integer.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/to-pos-integer.js
new file mode 100644
index 0000000000..fe2813da56
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/to-pos-integer.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var toInteger = require("./to-integer")
+
+  , max = Math.max;
+
+module.exports = function (value) {
+ return max(0, toInteger(value));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/number/to-uint32.js b/kbase-extension/static/ext_packages/igv/es5-ext/number/to-uint32.js
new file mode 100644
index 0000000000..cb3590aa26
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/number/to-uint32.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (value) {
+	// eslint-disable-next-line no-bitwise
+	return value >>> 0;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/_iterate.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/_iterate.js
new file mode 100644
index 0000000000..1f0c85fd47
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/_iterate.js
@@ -0,0 +1,30 @@
+// Internal method, used by iteration functions.
+// Calls a function for each key-value pair found in object
+// Optionally takes compareFn to iterate object in specific order
+
+"use strict";
+
+var callable                = require("./valid-callable")
+  , value                   = require("./valid-value")
+  , bind                    = Function.prototype.bind
+  , call                    = Function.prototype.call
+  , keys                    = Object.keys
+  , objPropertyIsEnumerable = Object.prototype.propertyIsEnumerable;
+
+module.exports = function (method, defVal) {
+	return function (obj, cb /*, thisArg, compareFn*/) {
+		var list, thisArg = arguments[2], compareFn = arguments[3];
+		obj = Object(value(obj));
+		callable(cb);
+
+		list = keys(obj);
+		if (compareFn) {
+			list.sort(typeof compareFn === "function" ? bind.call(compareFn, obj) : undefined);
+		}
+		if (typeof method !== "function") method = list[method];
+		return call.call(method, list, function (key, index) {
+			if (!objPropertyIsEnumerable.call(obj, key)) return defVal;
+			return call.call(cb, thisArg, obj[key], key, obj, index);
+		});
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/assign-deep.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/assign-deep.js
new file mode 100644
index 0000000000..558a5ce0b1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/assign-deep.js
@@ -0,0 +1,33 @@
+"use strict";
+
+var includes      = require("../array/#/contains")
+  , uniq          = require("../array/#/uniq")
+  , objForEach    = require("./for-each")
+  , isPlainObject = require("./is-plain-object")
+  , ensureValue   = require("./valid-value");
+
+var isArray = Array.isArray, slice = Array.prototype.slice;
+
+var deepAssign = function (target, source) {
+	if (isPlainObject(target)) {
+		if (!isPlainObject(source)) return source;
+		objForEach(source, function (value, key) {
+			target[key] = deepAssign(target[key], value);
+		});
+		return target;
+	}
+	if (isArray(target)) {
+		if (!isArray(source)) return source;
+		source.forEach(function (item) {
+			if (!includes.call(target, item)) target.push(item);
+		});
+		return target;
+	}
+	return source;
+};
+
+module.exports = function (target /*, ...objects*/) {
+	return uniq
+		.call([ensureValue(target)].concat(slice.call(arguments, 1).map(ensureValue)))
+		.reduce(deepAssign);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/implement.js
new file mode 100644
index 0000000000..de3c92f14f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Object, "assign", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/index.js
new file mode 100644
index 0000000000..1dd31e6401
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Object.assign
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/is-implemented.js
new file mode 100644
index 0000000000..6b90ea969d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/is-implemented.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function () {
+	var assign = Object.assign, obj;
+	if (typeof assign !== "function") return false;
+	obj = { foo: "raz" };
+	assign(obj, { bar: "dwa" }, { trzy: "trzy" });
+	return (obj.foo + obj.bar + obj.trzy) === "razdwatrzy";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/shim.js
new file mode 100644
index 0000000000..afa58f2f9f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/assign/shim.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var keys  = require("../keys")
+  , value = require("../valid-value")
+  , max   = Math.max;
+
+module.exports = function (dest, src /*, …srcn*/) {
+	var error, i, length = max(arguments.length, 2), assign;
+	dest = Object(value(dest));
+	assign = function (key) {
+		try {
+			dest[key] = src[key];
+		} catch (e) {
+			if (!error) error = e;
+		}
+	};
+	for (i = 1; i < length; ++i) {
+		src = arguments[i];
+		keys(src).forEach(assign);
+	}
+	if (error !== undefined) throw error;
+	return dest;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/clear.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/clear.js
new file mode 100644
index 0000000000..268cc5b5d5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/clear.js
@@ -0,0 +1,16 @@
+"use strict";
+
+var keys = require("./keys");
+
+module.exports = function (obj) {
+	var error;
+	keys(obj).forEach(function (key) {
+		try {
+			delete this[key];
+		} catch (e) {
+			if (!error) error = e;
+		}
+	}, obj);
+	if (error !== undefined) throw error;
+	return obj;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/compact.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/compact.js
new file mode 100644
index 0000000000..9943aedc7b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/compact.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var filter  = require("./filter")
+  , isValue = require("./is-value");
+
+module.exports = function (obj) {
+	return filter(obj, function (val) {
+		return isValue(val);
+	});
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/compare.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/compare.js
new file mode 100644
index 0000000000..8d07858902
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/compare.js
@@ -0,0 +1,45 @@
+"use strict";
+
+var strCompare = require("../string/#/case-insensitive-compare")
+  , isObject   = require("./is-object")
+  , isValue    = require("./is-value")
+  , numIsNaN   = require("../number/is-nan")
+  , resolve
+  , typeMap;
+
+typeMap = {
+	undefined: 0,
+	object: 1,
+	boolean: 2,
+	string: 3,
+	number: 4
+};
+
+resolve = function (a) {
+	if (isObject(a)) {
+		if (typeof a.valueOf !== "function") return NaN;
+		a = a.valueOf();
+		if (isObject(a)) {
+			if (typeof a.toString !== "function") return NaN;
+			a = a.toString();
+			if (typeof a !== "string") return NaN;
+		}
+	}
+	return a;
+};
+
+module.exports = function (val1, val2) {
+	if (val1 === val2) return 0; // Same
+
+	val1 = resolve(val1);
+	val2 = resolve(val2);
+	// eslint-disable-next-line eqeqeq
+	if (val1 == val2) return typeMap[typeof val1] - typeMap[typeof val2];
+	if (!isValue(val1)) return -1;
+	if (!isValue(val2)) return 1;
+	if (typeof val1 === "string" || typeof val2 === "string") {
+		return strCompare.call(val1, val2);
+	}
+	if (numIsNaN(val1) && numIsNaN(val2)) return 0; // Jslint: ignore
+	return Number(val1) - Number(val2);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/copy-deep.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/copy-deep.js
new file mode 100644
index 0000000000..39f9a1d691
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/copy-deep.js
@@ -0,0 +1,37 @@
+"use strict";
+
+var forEach       = require("./for-each")
+  , isPlainObject = require("./is-plain-object")
+  , ensureValue   = require("./valid-value")
+  , isArray       = Array.isArray;
+
+var copyValue = function (value, ancestors, ancestorsCopy) {
+	var mode;
+	if (isPlainObject(value)) mode = "object";
+	else if (isArray(value)) mode = "array";
+	if (!mode) return value;
+
+	var copy = ancestorsCopy[ancestors.indexOf(value)];
+	if (copy) return copy;
+	copy = mode === "object" ? {} : [];
+
+	ancestors.push(value);
+	ancestorsCopy.push(copy);
+	if (mode === "object") {
+		forEach(value, function (item, key) {
+			copy[key] = copyValue(item, ancestors, ancestorsCopy);
+		});
+	} else {
+		value.forEach(function (item, index) {
+			copy[index] = copyValue(item, ancestors, ancestorsCopy);
+		});
+	}
+	ancestors.pop();
+	ancestorsCopy.pop();
+
+	return copy;
+};
+
+module.exports = function (source) {
+	return copyValue(ensureValue(source), [], []);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/copy.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/copy.js
new file mode 100644
index 0000000000..5368e42816
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/copy.js
@@ -0,0 +1,19 @@
+"use strict";
+
+var aFrom  = require("../array/from")
+  , assign = require("./assign")
+  , value  = require("./valid-value");
+
+module.exports = function (obj/*, propertyNames, options*/) {
+	var copy = Object(value(obj)), propertyNames = arguments[1], options = Object(arguments[2]);
+	if (copy !== obj && !propertyNames) return copy;
+	var result = {};
+	if (propertyNames) {
+		aFrom(propertyNames, function (propertyName) {
+			if (options.ensure || propertyName in obj) result[propertyName] = obj[propertyName];
+		});
+	} else {
+		assign(result, obj);
+	}
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/count.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/count.js
new file mode 100644
index 0000000000..8a2a71ef86
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/count.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var keys  = require("./keys");
+
+module.exports = function (obj) {
+ return keys(obj).length;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/create.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/create.js
new file mode 100644
index 0000000000..9e3e6e8d18
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/create.js
@@ -0,0 +1,48 @@
+// Workaround for http://code.google.com/p/v8/issues/detail?id=2804
+
+"use strict";
+
+var create = Object.create, shim;
+
+if (!require("./set-prototype-of/is-implemented")()) {
+	shim = require("./set-prototype-of/shim");
+}
+
+module.exports = (function () {
+	var nullObject, polyProps, desc;
+	if (!shim) return create;
+	if (shim.level !== 1) return create;
+
+	nullObject = {};
+	polyProps = {};
+	desc = {
+		configurable: false,
+		enumerable: false,
+		writable: true,
+		value: undefined
+	};
+	Object.getOwnPropertyNames(Object.prototype).forEach(function (name) {
+		if (name === "__proto__") {
+			polyProps[name] = {
+				configurable: true,
+				enumerable: false,
+				writable: true,
+				value: undefined
+			};
+			return;
+		}
+		polyProps[name] = desc;
+	});
+	Object.defineProperties(nullObject, polyProps);
+
+	Object.defineProperty(shim, "nullPolyfill", {
+		configurable: false,
+		enumerable: false,
+		writable: false,
+		value: nullObject
+	});
+
+	return function (prototype, props) {
+		return create(prototype === null ? nullObject : prototype, props);
+	};
+}());
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-array.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-array.js
new file mode 100644
index 0000000000..5ca7a9493b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-array.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var toShortString = require("../to-short-string-representation")
+  , isArray       = require("./is-array-like");
+
+module.exports = function (value) {
+	if (isArray(value)) return value;
+	throw new TypeError(toShortString(value) + " is not a array");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-finite-number.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-finite-number.js
new file mode 100644
index 0000000000..4f6e4b4a88
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-finite-number.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var isFiniteNumber = require("./is-finite-number")
+  , safeToString   = require("../safe-to-string");
+
+module.exports = function (value) {
+	if (isFiniteNumber(value)) return Number(value);
+	throw new TypeError(safeToString(value) + " does not represent a finite number value");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-integer.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-integer.js
new file mode 100644
index 0000000000..9ec64b5bd4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-integer.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var toShortString = require("../to-short-string-representation")
+  , isInteger     = require("./is-integer");
+
+module.exports = function (num) {
+	if (!isInteger(num)) throw new TypeError(toShortString(num) + " is not a integer");
+	return Number(num);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-natural-number-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-natural-number-value.js
new file mode 100644
index 0000000000..1a901aa42c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-natural-number-value.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var isNaturalValue = require("./is-natural-number-value")
+  , toShortString  = require("../to-short-string-representation");
+
+module.exports = function (arg) {
+	var num = Number(arg);
+	if (!isNaturalValue(arg)) throw new TypeError(toShortString(arg) + " is not a natural number");
+	return num;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-natural-number.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-natural-number.js
new file mode 100644
index 0000000000..ec7e514671
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-natural-number.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var isNatural     = require("../number/is-natural")
+  , toShortString = require("../to-short-string-representation");
+
+module.exports = function (arg) {
+	var num = Number(arg);
+	if (!isNatural(num)) throw new TypeError(toShortString(arg) + " is not a natural number");
+	return num;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-plain-function.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-plain-function.js
new file mode 100644
index 0000000000..6cd9853e92
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-plain-function.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var safeToString    = require("../safe-to-string")
+  , isPlainFunction = require("./is-plain-function");
+
+module.exports = function (value) {
+	if (!isPlainFunction(value)) {
+		throw new TypeError(safeToString(value) + " is not a plain function");
+	}
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-promise.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-promise.js
new file mode 100644
index 0000000000..b5b535631e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-promise.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var safeToString = require("../safe-to-string")
+  , isPromise    = require("./is-promise");
+
+module.exports = function (value) {
+	if (!isPromise(value)) throw new TypeError(safeToString(value) + " is not a promise");
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-thenable.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-thenable.js
new file mode 100644
index 0000000000..c55c17ad40
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/ensure-thenable.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var safeToString = require("../safe-to-string")
+  , isThenable   = require("./is-thenable");
+
+module.exports = function (value) {
+	if (!isThenable(value)) throw new TypeError(safeToString(value) + " is not a thenable");
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/eq.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/eq.js
new file mode 100644
index 0000000000..031246800f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/eq.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var numIsNaN = require("../number/is-nan");
+
+module.exports = function (val1, val2) {
+	return val1 === val2 || (numIsNaN(val1) && numIsNaN(val2));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/every.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/every.js
new file mode 100644
index 0000000000..892b5485a2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/every.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./_iterate")("every", true);
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/filter.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/filter.js
new file mode 100644
index 0000000000..c7dd969b7e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/filter.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var callable = require("./valid-callable")
+  , forEach  = require("./for-each")
+  , call     = Function.prototype.call;
+
+module.exports = function (obj, cb /*, thisArg*/) {
+	var result = {}, thisArg = arguments[2];
+	callable(cb);
+	forEach(obj, function (value, key, targetObj, index) {
+		if (call.call(cb, thisArg, value, key, targetObj, index)) result[key] = targetObj[key];
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/find-key.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/find-key.js
new file mode 100644
index 0000000000..6da6ba6f48
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/find-key.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./_iterate")(require("../array/#/find"), false);
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/find.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/find.js
new file mode 100644
index 0000000000..5960421a0f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/find.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var findKey = require("./find-key")
+  , isValue = require("./is-value");
+
+// eslint-disable-next-line no-unused-vars
+module.exports = function (obj, cb /*, thisArg, compareFn*/) {
+	var key = findKey.apply(this, arguments);
+	return isValue(key) ? obj[key] : key;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/first-key.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/first-key.js
new file mode 100644
index 0000000000..3666de57bd
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/first-key.js
@@ -0,0 +1,13 @@
+"use strict";
+
+var value                   = require("./valid-value")
+  , objPropertyIsEnumerable = Object.prototype.propertyIsEnumerable;
+
+module.exports = function (obj) {
+	var i;
+	value(obj);
+	for (i in obj) {
+		if (objPropertyIsEnumerable.call(obj, i)) return i;
+	}
+	return null;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/flatten.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/flatten.js
new file mode 100644
index 0000000000..34e1ab09ba
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/flatten.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var isPlainObject = require("./is-plain-object")
+  , forEach       = require("./for-each")
+
+  , process;
+
+process = function self(value, key) {
+	if (isPlainObject(value)) forEach(value, self, this);
+	else this[key] = value;
+};
+
+module.exports = function (obj) {
+	var flattened = {};
+	forEach(obj, process, flattened);
+	return flattened;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/for-each.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/for-each.js
new file mode 100644
index 0000000000..d282956d05
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/for-each.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./_iterate")("forEach");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/get-property-names.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/get-property-names.js
new file mode 100644
index 0000000000..7dfef2794c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/get-property-names.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var uniq                = require("../array/#/uniq")
+  , value               = require("./valid-value")
+  , push                = Array.prototype.push
+  , getOwnPropertyNames = Object.getOwnPropertyNames
+  , getPrototypeOf      = Object.getPrototypeOf;
+
+module.exports = function (obj) {
+	var keys;
+	obj = Object(value(obj));
+	keys = getOwnPropertyNames(obj);
+	while ((obj = getPrototypeOf(obj))) {
+		push.apply(keys, getOwnPropertyNames(obj));
+	}
+	return uniq.call(keys);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/index.js
new file mode 100644
index 0000000000..91e8818a86
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/index.js
@@ -0,0 +1,68 @@
+"use strict";
+
+module.exports = {
+	assign: require("./assign"),
+	assignDeep: require("./assign-deep"),
+	clear: require("./clear"),
+	compact: require("./compact"),
+	compare: require("./compare"),
+	copy: require("./copy"),
+	copyDeep: require("./copy-deep"),
+	count: require("./count"),
+	create: require("./create"),
+	ensureArray: require("./ensure-array"),
+	ensureFiniteNumber: require("./ensure-finite-number"),
+	ensureInteger: require("./ensure-integer"),
+	ensureNaturalNumber: require("./ensure-natural-number"),
+	ensureNaturalNumberValue: require("./ensure-natural-number-value"),
+	ensurePlainFunction: require("./ensure-plain-function"),
+	ensurePromise: require("./ensure-promise"),
+	ensureThenable: require("./ensure-thenable"),
+	eq: require("./eq"),
+	every: require("./every"),
+	filter: require("./filter"),
+	find: require("./find"),
+	findKey: require("./find-key"),
+	firstKey: require("./first-key"),
+	flatten: require("./flatten"),
+	forEach: require("./for-each"),
+	getPropertyNames: require("./get-property-names"),
+	is: require("./is"),
+	isArrayLike: require("./is-array-like"),
+	isCallable: require("./is-callable"),
+	isCopy: require("./is-copy"),
+	isCopyDeep: require("./is-copy-deep"),
+	isEmpty: require("./is-empty"),
+	isFiniteNumber: require("./is-finite-number"),
+	isInteger: require("./is-integer"),
+	isNaturalNumber: require("./is-natural-number"),
+	isNaturalNumberValue: require("./is-natural-number-value"),
+	isNumberValue: require("./is-number-value"),
+	isObject: require("./is-object"),
+	isPlainFunction: require("./is-plain-function"),
+	isPlainObject: require("./is-plain-object"),
+	isPromise: require("./is-promise"),
+	isThenable: require("./is-thenable"),
+	isValue: require("./is-value"),
+	keyOf: require("./key-of"),
+	keys: require("./keys"),
+	map: require("./map"),
+	mapKeys: require("./map-keys"),
+	normalizeOptions: require("./normalize-options"),
+	mixin: require("./mixin"),
+	mixinPrototypes: require("./mixin-prototypes"),
+	primitiveSet: require("./primitive-set"),
+	safeTraverse: require("./safe-traverse"),
+	serialize: require("./serialize"),
+	setPrototypeOf: require("./set-prototype-of"),
+	some: require("./some"),
+	toArray: require("./to-array"),
+	unserialize: require("./unserialize"),
+	validateArrayLike: require("./validate-array-like"),
+	validateArrayLikeObject: require("./validate-array-like-object"),
+	validCallable: require("./valid-callable"),
+	validObject: require("./valid-object"),
+	validateStringifiable: require("./validate-stringifiable"),
+	validateStringifiableValue: require("./validate-stringifiable-value"),
+	validValue: require("./valid-value")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-array-like.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-array-like.js
new file mode 100644
index 0000000000..fcb9115d27
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-array-like.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var isFunction = require("../function/is-function")
+  , isObject   = require("./is-object")
+  , isValue    = require("./is-value");
+
+module.exports = function (value) {
+	return (
+		(isValue(value) &&
+			typeof value.length === "number" &&
+			// Just checking ((typeof x === 'object') && (typeof x !== 'function'))
+			// won't work right for some cases, e.g.:
+			// type of instance of NodeList in Safari is a 'function'
+			((isObject(value) && !isFunction(value)) || typeof value === "string")) ||
+		false
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-callable.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-callable.js
new file mode 100644
index 0000000000..c55915bc3a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-callable.js
@@ -0,0 +1,7 @@
+// Deprecated
+
+"use strict";
+
+module.exports = function (obj) {
+ return typeof obj === "function";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-copy-deep.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-copy-deep.js
new file mode 100644
index 0000000000..a1206aead2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-copy-deep.js
@@ -0,0 +1,59 @@
+"use strict";
+
+var eq            = require("./eq")
+  , isPlainObject = require("./is-plain-object")
+  , value         = require("./valid-value");
+
+var isArray = Array.isArray
+  , keys = Object.keys
+  , objPropertyIsEnumerable = Object.prototype.propertyIsEnumerable
+  , objHasOwnProperty = Object.prototype.hasOwnProperty
+  , eqArr
+  , eqVal
+  , eqObj;
+
+eqArr = function (arr1, arr2, recMap) {
+	var i, length = arr1.length;
+	if (length !== arr2.length) return false;
+	for (i = 0; i < length; ++i) {
+		if (objHasOwnProperty.call(arr1, i) !== objHasOwnProperty.call(arr2, i)) return false;
+		if (!eqVal(arr1[i], arr2[i], recMap)) return false;
+	}
+	return true;
+};
+
+eqObj = function (obj1, obj2, recMap) {
+	var k1 = keys(obj1), k2 = keys(obj2);
+	if (k1.length !== k2.length) return false;
+	return k1.every(function (key) {
+		if (!objPropertyIsEnumerable.call(obj2, key)) return false;
+		return eqVal(obj1[key], obj2[key], recMap);
+	});
+};
+
+eqVal = function (val1, val2, recMap) {
+	var i, eqX, c1, c2;
+	if (eq(val1, val2)) return true;
+	if (isPlainObject(val1)) {
+		if (!isPlainObject(val2)) return false;
+		eqX = eqObj;
+	} else if (isArray(val1) && isArray(val2)) {
+		eqX = eqArr;
+	} else {
+		return false;
+	}
+	c1 = recMap[0];
+	c2 = recMap[1];
+	i = c1.indexOf(val1);
+	if (i === -1) {
+		i = c1.push(val1) - 1;
+		c2[i] = [];
+	} else if (c2[i].indexOf(val2) !== -1) return true;
+	c2[i].push(val2);
+	return eqX(val1, val2, recMap);
+};
+
+module.exports = function (val1, val2) {
+	if (eq(value(val1), value(val2))) return true;
+	return eqVal(Object(val1), Object(val2), [[], []]);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-copy.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-copy.js
new file mode 100644
index 0000000000..8c6ae5e2cc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-copy.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var eq                      = require("./eq")
+  , value                   = require("./valid-value")
+  , keys                    = Object.keys
+  , objPropertyIsEnumerable = Object.prototype.propertyIsEnumerable;
+
+module.exports = function (val1, val2) {
+	var k1, k2;
+
+	if (eq(value(val1), value(val2))) return true;
+
+	val1 = Object(val1);
+	val2 = Object(val2);
+
+	k1 = keys(val1);
+	k2 = keys(val2);
+	if (k1.length !== k2.length) return false;
+	return k1.every(function (key) {
+		if (!objPropertyIsEnumerable.call(val2, key)) return false;
+		return eq(val1[key], val2[key]);
+	});
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-empty.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-empty.js
new file mode 100644
index 0000000000..dbc52d0cc5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-empty.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var value                   = require("./valid-value")
+  , objPropertyIsEnumerable = Object.prototype.propertyIsEnumerable;
+
+module.exports = function (obj) {
+	var i;
+	value(obj);
+	for (i in obj) {
+		// Jslint: ignore
+		if (objPropertyIsEnumerable.call(obj, i)) return false;
+	}
+	return true;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-finite-number.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-finite-number.js
new file mode 100644
index 0000000000..78ed669202
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-finite-number.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isNumber = require("./is-number-value");
+
+module.exports = function (value) {
+	return isNumber(value) && isFinite(value);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-integer.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-integer.js
new file mode 100644
index 0000000000..1745b82944
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-integer.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var isInteger = require("../number/is-integer")
+  , isValue   = require("./is-value");
+
+module.exports = function (arg) {
+	if (!isValue(arg)) return false;
+	arg = Number(arg);
+	return isInteger(arg);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-natural-number-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-natural-number-value.js
new file mode 100644
index 0000000000..c74452187e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-natural-number-value.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var isNaturalNumber = require("./is-natural-number")
+  , isValue         = require("./is-value");
+
+module.exports = function (arg) {
+	if (!isValue(arg)) return false;
+	return isNaturalNumber(arg);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-natural-number.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-natural-number.js
new file mode 100644
index 0000000000..37d7458635
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-natural-number.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isNatural = require("../number/is-natural");
+
+module.exports = function (arg) {
+	return isNatural(Number(arg));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-number-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-number-value.js
new file mode 100644
index 0000000000..e91527686b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-number-value.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var isValue = require("./is-value");
+
+module.exports = function (value) {
+	if (!isValue(value)) return false;
+	try {
+		return !isNaN(value);
+	} catch (e) {
+		return false;
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-object.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-object.js
new file mode 100644
index 0000000000..846ae21758
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-object.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var isValue = require("./is-value");
+
+var map = { function: true, object: true };
+
+module.exports = function (value) {
+	return (isValue(value) && map[typeof value]) || false;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-plain-function.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-plain-function.js
new file mode 100644
index 0000000000..a2f32348a1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-plain-function.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var isClassStr = RegExp.prototype.test.bind(/^\s*class[\s{/}]/)
+  , fnToString = Function.prototype.toString;
+
+module.exports = function (fn) {
+	if (typeof fn !== "function") return false;
+	if (typeof fn.call !== "function") return false;
+	if (typeof fn.apply !== "function") return false;
+	return !isClassStr(fnToString.call(fn));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-plain-object.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-plain-object.js
new file mode 100644
index 0000000000..ff15328961
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-plain-object.js
@@ -0,0 +1,20 @@
+"use strict";
+
+var getPrototypeOf = Object.getPrototypeOf
+  , prototype = Object.prototype
+  , objToString = prototype.toString
+  , id = Object().toString();
+
+module.exports = function (value) {
+	var proto, valueConstructor;
+	if (!value || typeof value !== "object" || objToString.call(value) !== id) {
+		return false;
+	}
+	proto = getPrototypeOf(value);
+	if (proto === null) {
+		valueConstructor = value.constructor;
+		if (typeof valueConstructor !== "function") return true;
+		return valueConstructor.prototype !== value;
+	}
+	return proto === prototype || getPrototypeOf(proto) === null;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-promise.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-promise.js
new file mode 100644
index 0000000000..33d6df133d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-promise.js
@@ -0,0 +1,4 @@
+"use strict";
+
+// In next major this check will also confirm on promise constructor
+module.exports = require("./is-thenable");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-thenable.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-thenable.js
new file mode 100644
index 0000000000..a37bffb6ed
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-thenable.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isCallable = require("./is-callable")
+  , isObject   = require("./is-object");
+
+module.exports = function (value) {
+	return isObject(value) && isCallable(value.then);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-value.js
new file mode 100644
index 0000000000..82af8f3389
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is-value.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var _undefined = require("../function/noop")(); // Support ES3 engines
+
+module.exports = function (val) {
+ return (val !== _undefined) && (val !== null);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/is.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/is.js
new file mode 100644
index 0000000000..54baadec88
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/is.js
@@ -0,0 +1,10 @@
+// Implementation credits go to:
+// http://wiki.ecmascript.org/doku.php?id=harmony:egal
+
+"use strict";
+
+var numIsNaN = require("../number/is-nan");
+
+module.exports = function (val1, val2) {
+	return val1 === val2 ? val1 !== 0 || 1 / val1 === 1 / val2 : numIsNaN(val1) && numIsNaN(val2);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/key-of.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/key-of.js
new file mode 100644
index 0000000000..dc640e4dcb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/key-of.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var eq   = require("./eq")
+  , some = require("./some");
+
+module.exports = function (obj, searchValue) {
+	var result;
+	return some(obj, function (value, name) {
+		if (eq(value, searchValue)) {
+			result = name;
+			return true;
+		}
+		return false;
+	})
+		? result
+		: null;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/implement.js
new file mode 100644
index 0000000000..7119a706e3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(Object, "keys", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/index.js
new file mode 100644
index 0000000000..b56b5347cc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Object.keys
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/is-implemented.js
new file mode 100644
index 0000000000..7abd33a886
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/is-implemented.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function () {
+	try {
+		Object.keys("primitive");
+		return true;
+	} catch (e) {
+ return false;
+}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/shim.js
new file mode 100644
index 0000000000..bc802017e5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/keys/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var isValue = require("../is-value");
+
+var keys = Object.keys;
+
+module.exports = function (object) {
+	return keys(isValue(object) ? Object(object) : object);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/map-keys.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/map-keys.js
new file mode 100644
index 0000000000..72dada0707
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/map-keys.js
@@ -0,0 +1,18 @@
+"use strict";
+
+var callable = require("./valid-callable")
+  , forEach  = require("./for-each")
+  , call     = Function.prototype.call;
+
+module.exports = function (obj, cb /*, thisArg*/) {
+	var result = {}, thisArg = arguments[2];
+	callable(cb);
+	forEach(
+		obj,
+		function (value, key, targetObj, index) {
+			result[call.call(cb, thisArg, key, value, this, index)] = value;
+		},
+		obj
+	);
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/map.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/map.js
new file mode 100644
index 0000000000..7b718db174
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/map.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var callable = require("./valid-callable")
+  , forEach  = require("./for-each")
+  , call     = Function.prototype.call;
+
+module.exports = function (obj, cb /*, thisArg*/) {
+	var result = {}, thisArg = arguments[2];
+	callable(cb);
+	forEach(obj, function (value, key, targetObj, index) {
+		result[key] = call.call(cb, thisArg, value, key, targetObj, index);
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/mixin-prototypes.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/mixin-prototypes.js
new file mode 100644
index 0000000000..9094aef1d9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/mixin-prototypes.js
@@ -0,0 +1,37 @@
+"use strict";
+
+var value                    = require("./valid-value")
+  , mixin                    = require("./mixin")
+  , defineProperty           = Object.defineProperty
+  , getOwnPropertyDescriptor = Object.getOwnPropertyDescriptor
+  , getOwnPropertyNames      = Object.getOwnPropertyNames
+  , getPrototypeOf           = Object.getPrototypeOf
+  , objHasOwnProperty        = Object.prototype.hasOwnProperty;
+
+module.exports = function (target, source) {
+	var error, end, define;
+	target = Object(value(target));
+	source = Object(value(source));
+	end = getPrototypeOf(target);
+	if (source === end) return target;
+	try {
+		mixin(target, source);
+	} catch (e) {
+		error = e;
+	}
+	source = getPrototypeOf(source);
+	define = function (name) {
+		if (objHasOwnProperty.call(target, name)) return;
+		try {
+			defineProperty(target, name, getOwnPropertyDescriptor(source, name));
+		} catch (e) {
+			error = e;
+		}
+	};
+	while (source && source !== end) {
+		getOwnPropertyNames(source).forEach(define);
+		source = getPrototypeOf(source);
+	}
+	if (error) throw error;
+	return target;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/mixin.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/mixin.js
new file mode 100644
index 0000000000..4da7cd519d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/mixin.js
@@ -0,0 +1,31 @@
+"use strict";
+
+var value = require("./valid-value")
+
+  , defineProperty = Object.defineProperty
+  , getOwnPropertyDescriptor = Object.getOwnPropertyDescriptor
+  , getOwnPropertyNames = Object.getOwnPropertyNames
+  , getOwnPropertySymbols = Object.getOwnPropertySymbols;
+
+module.exports = function (target, source) {
+	var error, sourceObject = Object(value(source));
+	target = Object(value(target));
+	getOwnPropertyNames(sourceObject).forEach(function (name) {
+		try {
+			defineProperty(target, name, getOwnPropertyDescriptor(source, name));
+		} catch (e) {
+ error = e;
+}
+	});
+	if (typeof getOwnPropertySymbols === "function") {
+		getOwnPropertySymbols(sourceObject).forEach(function (symbol) {
+			try {
+				defineProperty(target, symbol, getOwnPropertyDescriptor(source, symbol));
+			} catch (e) {
+ error = e;
+}
+		});
+	}
+	if (error !== undefined) throw error;
+	return target;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/normalize-options.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/normalize-options.js
new file mode 100644
index 0000000000..6c394fe9cb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/normalize-options.js
@@ -0,0 +1,20 @@
+"use strict";
+
+var isValue = require("./is-value");
+
+var forEach = Array.prototype.forEach, create = Object.create;
+
+var process = function (src, obj) {
+	var key;
+	for (key in src) obj[key] = src[key];
+};
+
+// eslint-disable-next-line no-unused-vars
+module.exports = function (opts1 /*, …options*/) {
+	var result = create(null);
+	forEach.call(arguments, function (options) {
+		if (!isValue(options)) return;
+		process(Object(options), result);
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/primitive-set.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/primitive-set.js
new file mode 100644
index 0000000000..235eaa7faf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/primitive-set.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var forEach = Array.prototype.forEach, create = Object.create;
+
+// eslint-disable-next-line no-unused-vars
+module.exports = function (arg /*, …args*/) {
+	var set = create(null);
+	forEach.call(arguments, function (name) {
+		set[name] = true;
+	});
+	return set;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/safe-traverse.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/safe-traverse.js
new file mode 100644
index 0000000000..7b72d55500
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/safe-traverse.js
@@ -0,0 +1,16 @@
+"use strict";
+
+var value   = require("./valid-value")
+  , isValue = require("./is-value");
+
+module.exports = function (obj /*, …names*/) {
+	var length, current = 1;
+	value(obj);
+	length = arguments.length - 1;
+	if (!length) return obj;
+	while (current < length) {
+		obj = obj[arguments[current++]];
+		if (!isValue(obj)) return undefined;
+	}
+	return obj[arguments[current]];
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/serialize.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/serialize.js
new file mode 100644
index 0000000000..4be9aeb1b4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/serialize.js
@@ -0,0 +1,41 @@
+"use strict";
+
+var toArray  = require("./to-array")
+  , isDate   = require("../date/is-date")
+  , isValue  = require("../object/is-value")
+  , isRegExp = require("../reg-exp/is-reg-exp");
+
+var isArray = Array.isArray
+  , stringify = JSON.stringify
+  , objHasOwnProperty = Object.prototype.hasOwnProperty;
+var keyValueToString = function (value, key) {
+	return stringify(key) + ":" + exports(value);
+};
+
+var sparseMap = function (arr) {
+	var i, length = arr.length, result = new Array(length);
+	for (i = 0; i < length; ++i) {
+		if (!objHasOwnProperty.call(arr, i)) continue;
+		result[i] = exports(arr[i]);
+	}
+	return result;
+};
+
+module.exports = exports = function (obj) {
+	if (!isValue(obj)) return String(obj);
+	switch (typeof obj) {
+		case "string":
+			return stringify(obj);
+		case "number":
+		case "boolean":
+		case "function":
+			return String(obj);
+		case "object":
+			if (isArray(obj)) return "[" + sparseMap(obj) + "]";
+			if (isRegExp(obj)) return String(obj);
+			if (isDate(obj)) return "new Date(" + obj.valueOf() + ")";
+			return "{" + toArray(obj, keyValueToString) + "}";
+		default:
+			throw new TypeError("Serialization of " + String(obj) + "is unsupported");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/implement.js
new file mode 100644
index 0000000000..1b91aebaf7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var shim;
+
+if (!require("./is-implemented")() && (shim = require("./shim"))) {
+	Object.defineProperty(Object, "setPrototypeOf",
+		{ value: shim, configurable: true, enumerable: false, writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/index.js
new file mode 100644
index 0000000000..e035173f6e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? Object.setPrototypeOf
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/is-implemented.js
new file mode 100644
index 0000000000..1a00627b79
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/is-implemented.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var create = Object.create, getPrototypeOf = Object.getPrototypeOf, plainObject = {};
+
+module.exports = function (/* CustomCreate*/) {
+	var setPrototypeOf = Object.setPrototypeOf, customCreate = arguments[0] || create;
+	if (typeof setPrototypeOf !== "function") return false;
+	return getPrototypeOf(setPrototypeOf(customCreate(null), plainObject)) === plainObject;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/shim.js
new file mode 100644
index 0000000000..bc2178444a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/set-prototype-of/shim.js
@@ -0,0 +1,86 @@
+/* eslint no-proto: "off" */
+
+// Big thanks to @WebReflection for sorting this out
+// https://gist.github.com/WebReflection/5593554
+
+"use strict";
+
+var isObject        = require("../is-object")
+  , value           = require("../valid-value")
+  , objIsPrototypeOf = Object.prototype.isPrototypeOf
+  , defineProperty  = Object.defineProperty
+  , nullDesc        = {
+	configurable: true,
+	enumerable: false,
+	writable: true,
+	value: undefined
+}
+  , validate;
+
+validate = function (obj, prototype) {
+	value(obj);
+	if (prototype === null || isObject(prototype)) return obj;
+	throw new TypeError("Prototype must be null or an object");
+};
+
+module.exports = (function (status) {
+	var fn, set;
+	if (!status) return null;
+	if (status.level === 2) {
+		if (status.set) {
+			set = status.set;
+			fn = function (obj, prototype) {
+				set.call(validate(obj, prototype), prototype);
+				return obj;
+			};
+		} else {
+			fn = function (obj, prototype) {
+				validate(obj, prototype).__proto__ = prototype;
+				return obj;
+			};
+		}
+	} else {
+		fn = function self(obj, prototype) {
+			var isNullBase;
+			validate(obj, prototype);
+			isNullBase = objIsPrototypeOf.call(self.nullPolyfill, obj);
+			if (isNullBase) delete self.nullPolyfill.__proto__;
+			if (prototype === null) prototype = self.nullPolyfill;
+			obj.__proto__ = prototype;
+			if (isNullBase) defineProperty(self.nullPolyfill, "__proto__", nullDesc);
+			return obj;
+		};
+	}
+	return Object.defineProperty(fn, "level", {
+		configurable: false,
+		enumerable: false,
+		writable: false,
+		value: status.level
+	});
+}(
+	(function () {
+		var tmpObj1 = Object.create(null)
+		  , tmpObj2 = {}
+		  , set
+		  , desc = Object.getOwnPropertyDescriptor(Object.prototype, "__proto__");
+
+		if (desc) {
+			try {
+				set = desc.set; // Opera crashes at this point
+				set.call(tmpObj1, tmpObj2);
+			} catch (ignore) {}
+			if (Object.getPrototypeOf(tmpObj1) === tmpObj2) return { set: set, level: 2 };
+		}
+
+		tmpObj1.__proto__ = tmpObj2;
+		if (Object.getPrototypeOf(tmpObj1) === tmpObj2) return { level: 2 };
+
+		tmpObj1 = {};
+		tmpObj1.__proto__ = tmpObj2;
+		if (Object.getPrototypeOf(tmpObj1) === tmpObj2) return { level: 1 };
+
+		return false;
+	})()
+));
+
+require("../create");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/some.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/some.js
new file mode 100644
index 0000000000..c919466b21
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/some.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./_iterate")("some", false);
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/to-array.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/to-array.js
new file mode 100644
index 0000000000..6ed50a8eb7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/to-array.js
@@ -0,0 +1,24 @@
+"use strict";
+
+var callable  = require("./valid-callable")
+  , isValue   = require("./is-value")
+  , forEach   = require("./for-each")
+  , call      = Function.prototype.call
+  , defaultCb = function (value, key) {
+	return [key, value];
+};
+
+module.exports = function (obj /*, cb, thisArg, compareFn*/) {
+	var a = [], cb = arguments[1], thisArg = arguments[2];
+	cb = isValue(cb) ? callable(cb) : defaultCb;
+
+	forEach(
+		obj,
+		function (value, key, targetObj, index) {
+			a.push(call.call(cb, thisArg, value, key, this, index));
+		},
+		obj,
+		arguments[3]
+	);
+	return a;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/unserialize.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/unserialize.js
new file mode 100644
index 0000000000..7574514397
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/unserialize.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var value = require("./valid-value");
+
+module.exports = exports = function (code) {
+	// eslint-disable-next-line no-new-func
+	return new Function("return " + value(code))();
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/valid-callable.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/valid-callable.js
new file mode 100644
index 0000000000..a97fb3eaf3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/valid-callable.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (fn) {
+	if (typeof fn !== "function") throw new TypeError(fn + " is not a function");
+	return fn;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/valid-object.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/valid-object.js
new file mode 100644
index 0000000000..74b5e5f27d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/valid-object.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isObject = require("./is-object");
+
+module.exports = function (value) {
+	if (!isObject(value)) throw new TypeError(value + " is not an Object");
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/valid-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/valid-value.js
new file mode 100644
index 0000000000..d0ced8a471
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/valid-value.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isValue = require("./is-value");
+
+module.exports = function (value) {
+	if (!isValue(value)) throw new TypeError("Cannot use null or undefined");
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-array-like-object.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-array-like-object.js
new file mode 100644
index 0000000000..d7c45b365f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-array-like-object.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var isArrayLike = require("./is-array-like")
+  , isObject    = require("./is-object");
+
+module.exports = function (obj) {
+	if (isObject(obj) && isArrayLike(obj)) return obj;
+	throw new TypeError(obj + " is not array-like object");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-array-like.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-array-like.js
new file mode 100644
index 0000000000..07aa794956
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-array-like.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isArrayLike = require("./is-array-like");
+
+module.exports = function (obj) {
+	if (isArrayLike(obj)) return obj;
+	throw new TypeError(obj + " is not array-like value");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-stringifiable-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-stringifiable-value.js
new file mode 100644
index 0000000000..5f47042813
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-stringifiable-value.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var ensureValue   = require("./valid-value")
+  , stringifiable = require("./validate-stringifiable");
+
+module.exports = function (value) {
+	return stringifiable(ensureValue(value));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-stringifiable.js b/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-stringifiable.js
new file mode 100644
index 0000000000..2b1f12714e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/object/validate-stringifiable.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var isCallable = require("./is-callable");
+
+module.exports = function (stringifiable) {
+	try {
+		if (stringifiable && isCallable(stringifiable.toString)) return stringifiable.toString();
+		return String(stringifiable);
+	} catch (e) {
+		throw new TypeError("Passed argument cannot be stringifed");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/optional-chaining.js b/kbase-extension/static/ext_packages/igv/es5-ext/optional-chaining.js
new file mode 100644
index 0000000000..f1811279ef
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/optional-chaining.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var isValue = require("./object/is-value");
+
+var slice = Array.prototype.slice;
+
+// eslint-disable-next-line no-unused-vars
+module.exports = function (value, propertyName1 /*, …propertyNamen*/) {
+	var propertyNames = slice.call(arguments, 1), index = 0, length = propertyNames.length;
+	while (isValue(value) && index < length) value = value[propertyNames[index++]];
+	return index === length ? value : undefined;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/package.json b/kbase-extension/static/ext_packages/igv/es5-ext/package.json
new file mode 100644
index 0000000000..eac9fc712c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/package.json
@@ -0,0 +1,90 @@
+{
+  "_args": [
+    [
+      "es5-ext@0.10.42",
+      "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components"
+    ]
+  ],
+  "_from": "es5-ext@0.10.42",
+  "_id": "es5-ext@0.10.42",
+  "_inBundle": false,
+  "_integrity": "sha512-AJxO1rmPe1bDEfSR6TJ/FgMFYuTBhR5R57KW58iCkYACMyFbrkqVyzXSurYoScDGvgyMpk7uRF/lPUPPTmsRSA==",
+  "_location": "/es5-ext",
+  "_phantomChildren": {},
+  "_requested": {
+    "type": "version",
+    "registry": true,
+    "raw": "es5-ext@0.10.42",
+    "name": "es5-ext",
+    "escapedName": "es5-ext",
+    "rawSpec": "0.10.42",
+    "saveSpec": null,
+    "fetchSpec": "0.10.42"
+  },
+  "_requiredBy": [
+    "/d",
+    "/es6-iterator",
+    "/es6-set",
+    "/es6-symbol",
+    "/event-emitter"
+  ],
+  "_resolved": "https://registry.npmjs.org/es5-ext/-/es5-ext-0.10.42.tgz",
+  "_spec": "0.10.42",
+  "_where": "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components",
+  "author": {
+    "name": "Mariusz Nowak",
+    "email": "medyk@medikoo.com",
+    "url": "http://www.medikoo.com/"
+  },
+  "bugs": {
+    "url": "https://github.com/medikoo/es5-ext/issues"
+  },
+  "dependencies": {
+    "es6-iterator": "~2.0.3",
+    "es6-symbol": "~3.1.1",
+    "next-tick": "1"
+  },
+  "description": "ECMAScript extensions and shims",
+  "devDependencies": {
+    "eslint": "^4.15",
+    "eslint-config-medikoo-es5": "^1.4.8",
+    "tad": "~0.2.7"
+  },
+  "eslintConfig": {
+    "extends": "medikoo-es5",
+    "root": true,
+    "rules": {
+      "no-extend-native": "off"
+    }
+  },
+  "homepage": "https://github.com/medikoo/es5-ext#readme",
+  "keywords": [
+    "ecmascript",
+    "ecmascript5",
+    "ecmascript6",
+    "es5",
+    "es6",
+    "extensions",
+    "ext",
+    "addons",
+    "extras",
+    "harmony",
+    "javascript",
+    "polyfill",
+    "shim",
+    "util",
+    "utils",
+    "utilities"
+  ],
+  "license": "ISC",
+  "name": "es5-ext",
+  "repository": {
+    "type": "git",
+    "url": "git://github.com/medikoo/es5-ext.git"
+  },
+  "scripts": {
+    "lint": "eslint --ignore-path=.gitignore .",
+    "test": "node ./node_modules/tad/bin/tad"
+  },
+  "version": "0.10.42"
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/promise/#/as-callback.js b/kbase-extension/static/ext_packages/igv/es5-ext/promise/#/as-callback.js
new file mode 100644
index 0000000000..5b61d1ba6d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/promise/#/as-callback.js
@@ -0,0 +1,19 @@
+"use strict";
+
+var ensurePlainFunction = require("../../object/ensure-plain-function")
+  , ensureThenable      = require("../../object/ensure-thenable")
+  , microtaskDelay      = require("../../function/#/microtask-delay");
+
+module.exports = function (callback) {
+	ensureThenable(this);
+	ensurePlainFunction(callback);
+	// Rely on microtaskDelay to escape eventual error swallowing
+	this.then(
+		microtaskDelay.call(function (value) {
+			callback(null, value);
+		}),
+		microtaskDelay.call(function (reason) {
+			callback(reason);
+		})
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/promise/#/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/promise/#/index.js
new file mode 100644
index 0000000000..557a4e7644
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/promise/#/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = {
+	asCallback: require("./as-callback")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/promise/.eslintrc.json b/kbase-extension/static/ext_packages/igv/es5-ext/promise/.eslintrc.json
new file mode 100644
index 0000000000..fd5e0e9d3e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/promise/.eslintrc.json
@@ -0,0 +1,3 @@
+{
+  "globals": { "Promise": true }
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/promise/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/promise/index.js
new file mode 100644
index 0000000000..6232b41825
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/promise/index.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = {
+	"#": require("./#"),
+	"lazy": require("./lazy")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/promise/lazy.js b/kbase-extension/static/ext_packages/igv/es5-ext/promise/lazy.js
new file mode 100644
index 0000000000..9611ef1dac
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/promise/lazy.js
@@ -0,0 +1,38 @@
+"use strict";
+
+var isFunction = require("../function/is-function");
+
+module.exports = function (executor) {
+	var Constructor;
+	if (isFunction(this)) {
+		Constructor = this;
+	} else if (typeof Promise === "function") {
+		Constructor = Promise;
+	} else {
+		throw new TypeError("Could not resolve Promise constuctor");
+	}
+
+	var lazyThen;
+	var promise = new Constructor(function (resolve, reject) {
+		lazyThen = function (onSuccess, onFailure) {
+			if (!hasOwnProperty.call(this, "then")) {
+				// Sanity check
+				throw new Error("Unexpected (inherited) lazy then invocation");
+			}
+
+			try {
+				executor(resolve, reject);
+			} catch (reason) {
+				reject(reason);
+			}
+			delete this.then;
+			return this.then(onSuccess, onFailure);
+		};
+	});
+
+	return Object.defineProperty(promise, "then", {
+		configurable: true,
+		writable: true,
+		value: lazyThen
+	});
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/index.js
new file mode 100644
index 0000000000..9b098e0e24
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/index.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = {
+	isSticky: require("./is-sticky"),
+	isUnicode: require("./is-unicode"),
+	match: require("./match"),
+	replace: require("./replace"),
+	search: require("./search"),
+	split: require("./split")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/is-sticky.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/is-sticky.js
new file mode 100644
index 0000000000..2d4bb2a652
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/is-sticky.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var validRegExp = require("../valid-reg-exp")
+
+  , re = /\/[a-xz]*y[a-xz]*$/;
+
+module.exports = function () {
+	return Boolean(String(validRegExp(this)).match(re));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/is-unicode.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/is-unicode.js
new file mode 100644
index 0000000000..4c1ad9e2c5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/is-unicode.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var validRegExp = require("../valid-reg-exp")
+
+  , re = /\/[a-xz]*u[a-xz]*$/;
+
+module.exports = function () {
+	return Boolean(String(validRegExp(this)).match(re));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/implement.js
new file mode 100644
index 0000000000..ba89bcec1a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(RegExp.prototype, "match", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/index.js
new file mode 100644
index 0000000000..b74d2f295e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? RegExp.prototype.match
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/is-implemented.js
new file mode 100644
index 0000000000..a5065fc72e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var re = /foo/;
+
+module.exports = function () {
+	if (typeof re.match !== "function") return false;
+	return re.match("barfoobar") && !re.match("elo");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/shim.js
new file mode 100644
index 0000000000..2955821861
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/match/shim.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var validRegExp = require("../../valid-reg-exp");
+
+module.exports = function (string) {
+	validRegExp(this);
+	return String(string).match(this);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/implement.js
new file mode 100644
index 0000000000..0db82917dc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(RegExp.prototype, "replace", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/index.js
new file mode 100644
index 0000000000..41ff4ba0c3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? RegExp.prototype.replace
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/is-implemented.js
new file mode 100644
index 0000000000..0a2e7c2fe8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var re = /foo/;
+
+module.exports = function () {
+	if (typeof re.replace !== "function") return false;
+	return re.replace("foobar", "mar") === "marbar";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/shim.js
new file mode 100644
index 0000000000..66f5d5b7ce
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/replace/shim.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var validRegExp = require("../../valid-reg-exp");
+
+module.exports = function (string, replaceValue) {
+	validRegExp(this);
+	return String(string).replace(this, replaceValue);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/implement.js
new file mode 100644
index 0000000000..34452615d0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(RegExp.prototype, "search", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/index.js
new file mode 100644
index 0000000000..a17213e4de
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? RegExp.prototype.search
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/is-implemented.js
new file mode 100644
index 0000000000..7f38669f10
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var re = /foo/;
+
+module.exports = function () {
+	if (typeof re.search !== "function") return false;
+	return re.search("barfoo") === 3;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/shim.js
new file mode 100644
index 0000000000..c97a78731c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/search/shim.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var validRegExp = require("../../valid-reg-exp");
+
+module.exports = function (string) {
+	validRegExp(this);
+	return String(string).search(this);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/implement.js
new file mode 100644
index 0000000000..d94acdd858
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(RegExp.prototype, "split", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/index.js
new file mode 100644
index 0000000000..7942f452d6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? RegExp.prototype.split
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/is-implemented.js
new file mode 100644
index 0000000000..90fca0cc86
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var re = /\|/;
+
+module.exports = function () {
+	if (typeof re.split !== "function") return false;
+	return re.split("bar|foo")[1] === "foo";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/shim.js
new file mode 100644
index 0000000000..c9c73cce26
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/split/shim.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var validRegExp = require("../../valid-reg-exp");
+
+module.exports = function (string) {
+	validRegExp(this);
+	return String(string).split(this);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/sticky/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/sticky/implement.js
new file mode 100644
index 0000000000..f636890f47
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/sticky/implement.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var isSticky = require("../is-sticky");
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(RegExp.prototype, "sticky", { configurable: true,
+		enumerable: false,
+get: isSticky });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/sticky/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/sticky/is-implemented.js
new file mode 100644
index 0000000000..a1ade11148
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/sticky/is-implemented.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function () {
+	var dummyRegExp = /a/;
+	// We need to do check on instance and not on prototype due to how ES2015 spec evolved:
+	// https://github.com/tc39/ecma262/issues/262
+	// https://github.com/tc39/ecma262/pull/263
+	// https://bugs.chromium.org/p/v8/issues/detail?id=4617
+	return "sticky" in dummyRegExp;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/unicode/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/unicode/implement.js
new file mode 100644
index 0000000000..a5fb20365b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/unicode/implement.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var isUnicode = require("../is-unicode");
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(RegExp.prototype, "unicode", { configurable: true,
+		enumerable: false,
+get: isUnicode });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/unicode/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/unicode/is-implemented.js
new file mode 100644
index 0000000000..48605d72a1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/#/unicode/is-implemented.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function () {
+	var dummyRegExp = /a/;
+	// We need to do check on instance and not on prototype due to how ES2015 spec evolved:
+	// https://github.com/tc39/ecma262/issues/262
+	// https://github.com/tc39/ecma262/pull/263
+	// https://bugs.chromium.org/p/v8/issues/detail?id=4617
+	return "unicode" in dummyRegExp;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/escape.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/escape.js
new file mode 100644
index 0000000000..964e3c61ac
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/escape.js
@@ -0,0 +1,11 @@
+// Thanks to Andrew Clover:
+// http://stackoverflow.com/questions/3561493
+// /is-there-a-regexp-escape-function-in-javascript
+
+"use strict";
+
+var re = /[-/\\^$*+?.()|[\]{}]/g;
+
+module.exports = function (str) {
+	return String(str).replace(re, "\\$&");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/index.js
new file mode 100644
index 0000000000..f023fe0398
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/index.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = {
+	"#": require("./#"),
+	"escape": require("./escape"),
+	"isRegExp": require("./is-reg-exp"),
+	"validRegExp": require("./valid-reg-exp")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/is-reg-exp.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/is-reg-exp.js
new file mode 100644
index 0000000000..b966b0f263
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/is-reg-exp.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var objToString = Object.prototype.toString, id = objToString.call(/a/);
+
+module.exports = function (value) {
+	return (value && (value instanceof RegExp || objToString.call(value) === id)) || false;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/valid-reg-exp.js b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/valid-reg-exp.js
new file mode 100644
index 0000000000..a05927a7eb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/reg-exp/valid-reg-exp.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isRegExp = require("./is-reg-exp");
+
+module.exports = function (value) {
+	if (!isRegExp(value)) throw new TypeError(value + " is not a RegExp object");
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/safe-to-string.js b/kbase-extension/static/ext_packages/igv/es5-ext/safe-to-string.js
new file mode 100644
index 0000000000..8c3ad3b09e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/safe-to-string.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var isCallable = require("./object/is-callable");
+
+module.exports = function (value) {
+	try {
+		if (value && isCallable(value.toString)) return value.toString();
+		return String(value);
+	} catch (e) {
+		return "[Non-coercible (to string) value]";
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/implement.js
new file mode 100644
index 0000000000..ab85d7c7a4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/implement.js
@@ -0,0 +1,6 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(String.prototype, require("es6-symbol").iterator,
+		{ value: require("./shim"), configurable: true, enumerable: false, writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/index.js
new file mode 100644
index 0000000000..b2bd1e863b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/index.js
@@ -0,0 +1,4 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? String.prototype[require("es6-symbol").iterator] : require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/is-implemented.js
new file mode 100644
index 0000000000..bb8a8d6efa
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/is-implemented.js
@@ -0,0 +1,16 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator;
+
+module.exports = function () {
+	var str = "🙈f", iterator, result;
+	if (typeof str[iteratorSymbol] !== "function") return false;
+	iterator = str[iteratorSymbol]();
+	if (!iterator) return false;
+	if (typeof iterator.next !== "function") return false;
+	result = iterator.next();
+	if (!result) return false;
+	if (result.value !== "🙈") return false;
+	if (result.done !== false) return false;
+	return true;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/shim.js
new file mode 100644
index 0000000000..1eafee27fe
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/@@iterator/shim.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var StringIterator = require("es6-iterator/string")
+  , value          = require("../../../object/valid-value");
+
+module.exports = function () {
+ return new StringIterator(value(this));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/at.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/at.js
new file mode 100644
index 0000000000..a8c291794b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/at.js
@@ -0,0 +1,35 @@
+// Based on: https://github.com/mathiasbynens/String.prototype.at
+// Thanks @mathiasbynens !
+
+"use strict";
+
+var toInteger  = require("../../number/to-integer")
+  , validValue = require("../../object/valid-value");
+
+module.exports = function (pos) {
+	var str = String(validValue(this)), size = str.length, cuFirst, cuSecond, nextPos, len;
+	pos = toInteger(pos);
+
+	// Account for out-of-bounds indices
+	// The odd lower bound is because the ToInteger operation is
+	// going to round `n` to `0` for `-1 < n <= 0`.
+	if (pos <= -1 || pos >= size) return "";
+
+	// Second half of `ToInteger`
+	// eslint-disable-next-line no-bitwise
+	pos |= 0;
+	// Get the first code unit and code unit value
+	cuFirst = str.charCodeAt(pos);
+	nextPos = pos + 1;
+	len = 1;
+	if (
+		// Check if it’s the start of a surrogate pair
+		cuFirst >= 0xd800 &&
+		cuFirst <= 0xdbff && // High surrogate
+		size > nextPos // There is a next code unit
+	) {
+		cuSecond = str.charCodeAt(nextPos);
+		if (cuSecond >= 0xdc00 && cuSecond <= 0xdfff) len = 2; // Low surrogate
+	}
+	return str.slice(pos, pos + len);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/camel-to-hyphen.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/camel-to-hyphen.js
new file mode 100644
index 0000000000..002dfd0b2b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/camel-to-hyphen.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var replace = String.prototype.replace
+  , re = /([A-Z])/g;
+
+module.exports = function () {
+	var str = replace.call(this, re, "-$1").toLowerCase();
+	if (str[0] === "-") str = str.slice(1);
+	return str;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/capitalize.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/capitalize.js
new file mode 100644
index 0000000000..fc92a9fb63
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/capitalize.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var value = require("../../object/valid-value");
+
+module.exports = function () {
+	var str = String(value(this));
+	return str.charAt(0).toUpperCase() + str.slice(1);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/case-insensitive-compare.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/case-insensitive-compare.js
new file mode 100644
index 0000000000..5d961a5e38
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/case-insensitive-compare.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var toLowerCase = String.prototype.toLowerCase;
+
+module.exports = function (other) {
+	return toLowerCase.call(this).localeCompare(toLowerCase.call(String(other)));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/implement.js
new file mode 100644
index 0000000000..f1dc80a049
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/implement.js
@@ -0,0 +1,9 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(String.prototype, "codePointAt",
+		{ value: require("./shim"),
+configurable: true,
+enumerable: false,
+			writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/index.js
new file mode 100644
index 0000000000..33d45c9f2d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? String.prototype.codePointAt
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/is-implemented.js
new file mode 100644
index 0000000000..7da785f2c1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var str = "abc\uD834\uDF06def";
+
+module.exports = function () {
+	if (typeof str.codePointAt !== "function") return false;
+	return str.codePointAt(3) === 0x1D306;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/shim.js
new file mode 100644
index 0000000000..0f331c3f10
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/code-point-at/shim.js
@@ -0,0 +1,26 @@
+// Based on: https://github.com/mathiasbynens/String.prototype.codePointAt
+// Thanks @mathiasbynens !
+
+"use strict";
+
+var toInteger  = require("../../../number/to-integer")
+  , validValue = require("../../../object/valid-value");
+
+module.exports = function (pos) {
+	var str = String(validValue(this)), length = str.length, first, second;
+	pos = toInteger(pos);
+
+	// Account for out-of-bounds indices:
+	if (pos < 0 || pos >= length) return undefined;
+
+	// Get the first code unit
+	first = str.charCodeAt(pos);
+	if (first >= 0xd800 && first <= 0xdbff && length > pos + 1) {
+		second = str.charCodeAt(pos + 1);
+		if (second >= 0xdc00 && second <= 0xdfff) {
+			// http://mathiasbynens.be/notes/javascript-encoding#surrogate-formulae
+			return (first - 0xd800) * 0x400 + second - 0xdc00 + 0x10000;
+		}
+	}
+	return first;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/implement.js
new file mode 100644
index 0000000000..395acea23a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/implement.js
@@ -0,0 +1,9 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(String.prototype, "contains",
+		{ value: require("./shim"),
+configurable: true,
+enumerable: false,
+			writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/index.js
new file mode 100644
index 0000000000..4f6a071404
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? String.prototype.contains
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/is-implemented.js
new file mode 100644
index 0000000000..c270bb1ad0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var str = "razdwatrzy";
+
+module.exports = function () {
+	if (typeof str.contains !== "function") return false;
+	return (str.contains("dwa") === true) && (str.contains("foo") === false);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/shim.js
new file mode 100644
index 0000000000..a7219f2e9d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/contains/shim.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var indexOf = String.prototype.indexOf;
+
+module.exports = function (searchString/*, position*/) {
+	return indexOf.call(this, searchString, arguments[1]) > -1;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/count.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/count.js
new file mode 100644
index 0000000000..7607013625
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/count.js
@@ -0,0 +1,15 @@
+"use strict";
+
+var ensureString = require("../../object/validate-stringifiable-value");
+
+module.exports = function (search) {
+	var string = ensureString(this), count = 0, index = 0;
+
+	search = ensureString(search);
+	if (!search) throw new TypeError("Search string cannot be empty");
+	while ((index = string.indexOf(search, index)) !== -1) {
+		++count;
+		index += search.length;
+	}
+	return count;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/implement.js
new file mode 100644
index 0000000000..19e5b86b89
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/implement.js
@@ -0,0 +1,9 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(String.prototype, "endsWith",
+		{ value: require("./shim"),
+configurable: true,
+enumerable: false,
+			writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/index.js
new file mode 100644
index 0000000000..952ed0ce19
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? String.prototype.endsWith
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/is-implemented.js
new file mode 100644
index 0000000000..fce38eb8ef
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var str = "razdwatrzy";
+
+module.exports = function () {
+	if (typeof str.endsWith !== "function") return false;
+	return (str.endsWith("trzy") === true) && (str.endsWith("raz") === false);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/shim.js
new file mode 100644
index 0000000000..c5371aa939
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/ends-with/shim.js
@@ -0,0 +1,18 @@
+"use strict";
+
+var toInteger = require("../../../number/to-integer")
+  , value     = require("../../../object/valid-value")
+  , isValue   = require("../../../object/is-value")
+  , min       = Math.min
+  , max       = Math.max;
+
+module.exports = function (searchString /*, endPosition*/) {
+	var self, start, endPos;
+	self = String(value(this));
+	searchString = String(searchString);
+	endPos = arguments[1];
+	start =
+		(isValue(endPos) ? min(max(toInteger(endPos), 0), self.length) : self.length) -
+		searchString.length;
+	return start < 0 ? false : self.indexOf(searchString, start) === start;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/hyphen-to-camel.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/hyphen-to-camel.js
new file mode 100644
index 0000000000..20a5105ccf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/hyphen-to-camel.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var replace = String.prototype.replace, re = /-([a-z0-9])/g;
+var toUpperCase = function (ignored, a) {
+	return a.toUpperCase();
+};
+
+module.exports = function () {
+	return replace.call(this, re, toUpperCase);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/indent.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/indent.js
new file mode 100644
index 0000000000..df8869dbc8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/indent.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var isValue = require("../../object/is-value")
+  , repeat  = require("./repeat")
+  , replace = String.prototype.replace
+  , re      = /(\r\n|[\n\r\u2028\u2029])([\u0000-\u0009\u000b-\uffff]+)/g;
+
+module.exports = function (indent /*, count*/) {
+	var count = arguments[1];
+	indent = repeat.call(String(indent), isValue(count) ? count : 1);
+	return indent + replace.call(this, re, "$1" + indent + "$2");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/index.js
new file mode 100644
index 0000000000..2344489745
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/index.js
@@ -0,0 +1,23 @@
+"use strict";
+
+module.exports = {
+	"@@iterator": require("./@@iterator"),
+	"at": require("./at"),
+	"count": require("./count"),
+	"camelToHyphen": require("./camel-to-hyphen"),
+	"capitalize": require("./capitalize"),
+	"caseInsensitiveCompare": require("./case-insensitive-compare"),
+	"codePointAt": require("./code-point-at"),
+	"contains": require("./contains"),
+	"hyphenToCamel": require("./hyphen-to-camel"),
+	"endsWith": require("./ends-with"),
+	"indent": require("./indent"),
+	"last": require("./last"),
+	"normalize": require("./normalize"),
+	"pad": require("./pad"),
+	"plainReplace": require("./plain-replace"),
+	"plainReplaceAll": require("./plain-replace-all"),
+	"repeat": require("./repeat"),
+	"startsWith": require("./starts-with"),
+	"uncapitalize": require("./uncapitalize")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/last.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/last.js
new file mode 100644
index 0000000000..f5c957fcae
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/last.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var value = require("../../object/valid-value");
+
+module.exports = function () {
+	var self = String(value(this)), length = self.length;
+	return length ? self[length - 1] : null;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/_data.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/_data.js
new file mode 100644
index 0000000000..356d5a6a54
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/_data.js
@@ -0,0 +1,7203 @@
+/* eslint max-lines: "off", no-sparse-arrays: "off", comma-style: "off" */
+
+"use strict";
+
+module.exports = {
+  0: {
+    60: [, , { 824: 8814 }],
+    61: [, , { 824: 8800 }],
+    62: [, , { 824: 8815 }],
+    65: [
+      ,
+      ,
+      {
+        768: 192,
+        769: 193,
+        770: 194,
+        771: 195,
+        772: 256,
+        774: 258,
+        775: 550,
+        776: 196,
+        777: 7842,
+        778: 197,
+        780: 461,
+        783: 512,
+        785: 514,
+        803: 7840,
+        805: 7680,
+        808: 260
+      }
+    ],
+    66: [, , { 775: 7682, 803: 7684, 817: 7686 }],
+    67: [, , { 769: 262, 770: 264, 775: 266, 780: 268, 807: 199 }],
+    68: [
+      ,
+      ,
+      { 775: 7690, 780: 270, 803: 7692, 807: 7696, 813: 7698, 817: 7694 }
+    ],
+    69: [
+      ,
+      ,
+      {
+        768: 200,
+        769: 201,
+        770: 202,
+        771: 7868,
+        772: 274,
+        774: 276,
+        775: 278,
+        776: 203,
+        777: 7866,
+        780: 282,
+        783: 516,
+        785: 518,
+        803: 7864,
+        807: 552,
+        808: 280,
+        813: 7704,
+        816: 7706
+      }
+    ],
+    70: [, , { 775: 7710 }],
+    71: [
+      ,
+      ,
+      { 769: 500, 770: 284, 772: 7712, 774: 286, 775: 288, 780: 486, 807: 290 }
+    ],
+    72: [
+      ,
+      ,
+      {
+        770: 292,
+        775: 7714,
+        776: 7718,
+        780: 542,
+        803: 7716,
+        807: 7720,
+        814: 7722
+      }
+    ],
+    73: [
+      ,
+      ,
+      {
+        768: 204,
+        769: 205,
+        770: 206,
+        771: 296,
+        772: 298,
+        774: 300,
+        775: 304,
+        776: 207,
+        777: 7880,
+        780: 463,
+        783: 520,
+        785: 522,
+        803: 7882,
+        808: 302,
+        816: 7724
+      }
+    ],
+    74: [, , { 770: 308 }],
+    75: [, , { 769: 7728, 780: 488, 803: 7730, 807: 310, 817: 7732 }],
+    76: [, , { 769: 313, 780: 317, 803: 7734, 807: 315, 813: 7740, 817: 7738 }],
+    77: [, , { 769: 7742, 775: 7744, 803: 7746 }],
+    78: [
+      ,
+      ,
+      {
+        768: 504,
+        769: 323,
+        771: 209,
+        775: 7748,
+        780: 327,
+        803: 7750,
+        807: 325,
+        813: 7754,
+        817: 7752
+      }
+    ],
+    79: [
+      ,
+      ,
+      {
+        768: 210,
+        769: 211,
+        770: 212,
+        771: 213,
+        772: 332,
+        774: 334,
+        775: 558,
+        776: 214,
+        777: 7886,
+        779: 336,
+        780: 465,
+        783: 524,
+        785: 526,
+        795: 416,
+        803: 7884,
+        808: 490
+      }
+    ],
+    80: [, , { 769: 7764, 775: 7766 }],
+    82: [
+      ,
+      ,
+      {
+        769: 340,
+        775: 7768,
+        780: 344,
+        783: 528,
+        785: 530,
+        803: 7770,
+        807: 342,
+        817: 7774
+      }
+    ],
+    83: [
+      ,
+      ,
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+    65268: [[1610], 256],
+    65269: [[1604, 1570], 256],
+    65270: [[1604, 1570], 256],
+    65271: [[1604, 1571], 256],
+    65272: [[1604, 1571], 256],
+    65273: [[1604, 1573], 256],
+    65274: [[1604, 1573], 256],
+    65275: [[1604, 1575], 256],
+    65276: [[1604, 1575], 256]
+  },
+  65280: {
+    65281: [[33], 256],
+    65282: [[34], 256],
+    65283: [[35], 256],
+    65284: [[36], 256],
+    65285: [[37], 256],
+    65286: [[38], 256],
+    65287: [[39], 256],
+    65288: [[40], 256],
+    65289: [[41], 256],
+    65290: [[42], 256],
+    65291: [[43], 256],
+    65292: [[44], 256],
+    65293: [[45], 256],
+    65294: [[46], 256],
+    65295: [[47], 256],
+    65296: [[48], 256],
+    65297: [[49], 256],
+    65298: [[50], 256],
+    65299: [[51], 256],
+    65300: [[52], 256],
+    65301: [[53], 256],
+    65302: [[54], 256],
+    65303: [[55], 256],
+    65304: [[56], 256],
+    65305: [[57], 256],
+    65306: [[58], 256],
+    65307: [[59], 256],
+    65308: [[60], 256],
+    65309: [[61], 256],
+    65310: [[62], 256],
+    65311: [[63], 256],
+    65312: [[64], 256],
+    65313: [[65], 256],
+    65314: [[66], 256],
+    65315: [[67], 256],
+    65316: [[68], 256],
+    65317: [[69], 256],
+    65318: [[70], 256],
+    65319: [[71], 256],
+    65320: [[72], 256],
+    65321: [[73], 256],
+    65322: [[74], 256],
+    65323: [[75], 256],
+    65324: [[76], 256],
+    65325: [[77], 256],
+    65326: [[78], 256],
+    65327: [[79], 256],
+    65328: [[80], 256],
+    65329: [[81], 256],
+    65330: [[82], 256],
+    65331: [[83], 256],
+    65332: [[84], 256],
+    65333: [[85], 256],
+    65334: [[86], 256],
+    65335: [[87], 256],
+    65336: [[88], 256],
+    65337: [[89], 256],
+    65338: [[90], 256],
+    65339: [[91], 256],
+    65340: [[92], 256],
+    65341: [[93], 256],
+    65342: [[94], 256],
+    65343: [[95], 256],
+    65344: [[96], 256],
+    65345: [[97], 256],
+    65346: [[98], 256],
+    65347: [[99], 256],
+    65348: [[100], 256],
+    65349: [[101], 256],
+    65350: [[102], 256],
+    65351: [[103], 256],
+    65352: [[104], 256],
+    65353: [[105], 256],
+    65354: [[106], 256],
+    65355: [[107], 256],
+    65356: [[108], 256],
+    65357: [[109], 256],
+    65358: [[110], 256],
+    65359: [[111], 256],
+    65360: [[112], 256],
+    65361: [[113], 256],
+    65362: [[114], 256],
+    65363: [[115], 256],
+    65364: [[116], 256],
+    65365: [[117], 256],
+    65366: [[118], 256],
+    65367: [[119], 256],
+    65368: [[120], 256],
+    65369: [[121], 256],
+    65370: [[122], 256],
+    65371: [[123], 256],
+    65372: [[124], 256],
+    65373: [[125], 256],
+    65374: [[126], 256],
+    65375: [[10629], 256],
+    65376: [[10630], 256],
+    65377: [[12290], 256],
+    65378: [[12300], 256],
+    65379: [[12301], 256],
+    65380: [[12289], 256],
+    65381: [[12539], 256],
+    65382: [[12530], 256],
+    65383: [[12449], 256],
+    65384: [[12451], 256],
+    65385: [[12453], 256],
+    65386: [[12455], 256],
+    65387: [[12457], 256],
+    65388: [[12515], 256],
+    65389: [[12517], 256],
+    65390: [[12519], 256],
+    65391: [[12483], 256],
+    65392: [[12540], 256],
+    65393: [[12450], 256],
+    65394: [[12452], 256],
+    65395: [[12454], 256],
+    65396: [[12456], 256],
+    65397: [[12458], 256],
+    65398: [[12459], 256],
+    65399: [[12461], 256],
+    65400: [[12463], 256],
+    65401: [[12465], 256],
+    65402: [[12467], 256],
+    65403: [[12469], 256],
+    65404: [[12471], 256],
+    65405: [[12473], 256],
+    65406: [[12475], 256],
+    65407: [[12477], 256],
+    65408: [[12479], 256],
+    65409: [[12481], 256],
+    65410: [[12484], 256],
+    65411: [[12486], 256],
+    65412: [[12488], 256],
+    65413: [[12490], 256],
+    65414: [[12491], 256],
+    65415: [[12492], 256],
+    65416: [[12493], 256],
+    65417: [[12494], 256],
+    65418: [[12495], 256],
+    65419: [[12498], 256],
+    65420: [[12501], 256],
+    65421: [[12504], 256],
+    65422: [[12507], 256],
+    65423: [[12510], 256],
+    65424: [[12511], 256],
+    65425: [[12512], 256],
+    65426: [[12513], 256],
+    65427: [[12514], 256],
+    65428: [[12516], 256],
+    65429: [[12518], 256],
+    65430: [[12520], 256],
+    65431: [[12521], 256],
+    65432: [[12522], 256],
+    65433: [[12523], 256],
+    65434: [[12524], 256],
+    65435: [[12525], 256],
+    65436: [[12527], 256],
+    65437: [[12531], 256],
+    65438: [[12441], 256],
+    65439: [[12442], 256],
+    65440: [[12644], 256],
+    65441: [[12593], 256],
+    65442: [[12594], 256],
+    65443: [[12595], 256],
+    65444: [[12596], 256],
+    65445: [[12597], 256],
+    65446: [[12598], 256],
+    65447: [[12599], 256],
+    65448: [[12600], 256],
+    65449: [[12601], 256],
+    65450: [[12602], 256],
+    65451: [[12603], 256],
+    65452: [[12604], 256],
+    65453: [[12605], 256],
+    65454: [[12606], 256],
+    65455: [[12607], 256],
+    65456: [[12608], 256],
+    65457: [[12609], 256],
+    65458: [[12610], 256],
+    65459: [[12611], 256],
+    65460: [[12612], 256],
+    65461: [[12613], 256],
+    65462: [[12614], 256],
+    65463: [[12615], 256],
+    65464: [[12616], 256],
+    65465: [[12617], 256],
+    65466: [[12618], 256],
+    65467: [[12619], 256],
+    65468: [[12620], 256],
+    65469: [[12621], 256],
+    65470: [[12622], 256],
+    65474: [[12623], 256],
+    65475: [[12624], 256],
+    65476: [[12625], 256],
+    65477: [[12626], 256],
+    65478: [[12627], 256],
+    65479: [[12628], 256],
+    65482: [[12629], 256],
+    65483: [[12630], 256],
+    65484: [[12631], 256],
+    65485: [[12632], 256],
+    65486: [[12633], 256],
+    65487: [[12634], 256],
+    65490: [[12635], 256],
+    65491: [[12636], 256],
+    65492: [[12637], 256],
+    65493: [[12638], 256],
+    65494: [[12639], 256],
+    65495: [[12640], 256],
+    65498: [[12641], 256],
+    65499: [[12642], 256],
+    65500: [[12643], 256],
+    65504: [[162], 256],
+    65505: [[163], 256],
+    65506: [[172], 256],
+    65507: [[175], 256],
+    65508: [[166], 256],
+    65509: [[165], 256],
+    65510: [[8361], 256],
+    65512: [[9474], 256],
+    65513: [[8592], 256],
+    65514: [[8593], 256],
+    65515: [[8594], 256],
+    65516: [[8595], 256],
+    65517: [[9632], 256],
+    65518: [[9675], 256]
+  }
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/implement.js
new file mode 100644
index 0000000000..ad11739e4f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/implement.js
@@ -0,0 +1,9 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(String.prototype, "normalize",
+		{ value: require("./shim"),
+configurable: true,
+enumerable: false,
+			writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/index.js
new file mode 100644
index 0000000000..7e91b08ba2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? String.prototype.normalize
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/is-implemented.js
new file mode 100644
index 0000000000..01b48a9d61
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var str = "æøåäüö";
+
+module.exports = function () {
+	if (typeof str.normalize !== "function") return false;
+	return str.normalize("NFKD") === "æøåäüö";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/shim.js
new file mode 100644
index 0000000000..aba37f55d5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/normalize/shim.js
@@ -0,0 +1,317 @@
+/* eslint no-bitwise: "off", max-statements: "off", max-lines: "off" */
+
+// Taken from: https://github.com/walling/unorm/blob/master/lib/unorm.js
+
+/*
+	* UnicodeNormalizer 1.0.0
+	* Copyright (c) 2008 Matsuza
+	* Dual licensed under the MIT (MIT-LICENSE.txt) and
+	* GPL (GPL-LICENSE.txt) licenses.
+	* $Date: 2008-06-05 16:44:17 +0200 (Thu, 05 Jun 2008) $
+	* $Rev: 13309 $
+*/
+
+"use strict";
+
+var primitiveSet = require("../../../object/primitive-set")
+  , validValue   = require("../../../object/valid-value")
+  , data         = require("./_data");
+
+var floor = Math.floor
+  , forms = primitiveSet("NFC", "NFD", "NFKC", "NFKD")
+  , DEFAULT_FEATURE = [null, 0, {}]
+  , CACHE_THRESHOLD = 10
+  , SBase = 0xac00
+  , LBase = 0x1100
+  , VBase = 0x1161
+  , TBase = 0x11a7
+  , LCount = 19
+  , VCount = 21
+  , TCount = 28
+  , NCount = VCount * TCount
+  , SCount = LCount * NCount
+  , UChar
+  , cache = {}
+  , cacheCounter = []
+  , fromCache
+  , fromData
+  , fromCpOnly
+  , fromRuleBasedJamo
+  , fromCpFilter
+  , strategies
+  , UCharIterator
+  , RecursDecompIterator
+  , DecompIterator
+  , CompIterator
+  , createIterator
+  , normalize;
+
+UChar = function (cp, feature) {
+	this.codepoint = cp;
+	this.feature = feature;
+};
+
+// Strategies
+(function () {
+	for (var i = 0; i <= 0xff; ++i) cacheCounter[i] = 0;
+}());
+
+fromCache = function (nextStep, cp, needFeature) {
+	var ret = cache[cp];
+	if (!ret) {
+		ret = nextStep(cp, needFeature);
+		if (Boolean(ret.feature) && ++cacheCounter[(cp >> 8) & 0xff] > CACHE_THRESHOLD) {
+			cache[cp] = ret;
+		}
+	}
+	return ret;
+};
+
+fromData = function (next, cp) {
+	var hash = cp & 0xff00, dunit = UChar.udata[hash] || {}, feature = dunit[cp];
+	return feature ? new UChar(cp, feature) : new UChar(cp, DEFAULT_FEATURE);
+};
+fromCpOnly = function (next, cp, needFeature) {
+	return needFeature ? next(cp, needFeature) : new UChar(cp, null);
+};
+
+fromRuleBasedJamo = function (next, cp, needFeature) {
+	var char, base, i, arr, SIndex, TIndex, feature, j;
+	if (cp < LBase || (LBase + LCount <= cp && cp < SBase) || SBase + SCount < cp) {
+		return next(cp, needFeature);
+	}
+	if (LBase <= cp && cp < LBase + LCount) {
+		char = {};
+		base = (cp - LBase) * VCount;
+		for (i = 0; i < VCount; ++i) {
+			char[VBase + i] = SBase + TCount * (i + base);
+		}
+		arr = new Array(3);
+		arr[2] = char;
+		return new UChar(cp, arr);
+	}
+
+	SIndex = cp - SBase;
+	TIndex = SIndex % TCount;
+	feature = [];
+	if (TIndex === 0) {
+		feature[0] = [LBase + floor(SIndex / NCount), VBase + floor(SIndex % NCount / TCount)];
+		feature[2] = {};
+		for (j = 1; j < TCount; ++j) {
+			feature[2][TBase + j] = cp + j;
+		}
+	} else {
+		feature[0] = [SBase + SIndex - TIndex, TBase + TIndex];
+	}
+	return new UChar(cp, feature);
+};
+
+fromCpFilter = function (next, cp, needFeature) {
+	return cp < 60 || (cp > 13311 && cp < 42607)
+		? new UChar(cp, DEFAULT_FEATURE)
+		: next(cp, needFeature);
+};
+
+strategies = [fromCpFilter, fromCache, fromCpOnly, fromRuleBasedJamo, fromData];
+
+UChar.fromCharCode = strategies.reduceRight(function (next, strategy) {
+	return function (cp, needFeature) {
+		return strategy(next, cp, needFeature);
+	};
+}, null);
+
+UChar.isHighSurrogate = function (cp) {
+	return cp >= 0xd800 && cp <= 0xdbff;
+};
+UChar.isLowSurrogate = function (cp) {
+	return cp >= 0xdc00 && cp <= 0xdfff;
+};
+
+UChar.prototype.prepFeature = function () {
+	if (!this.feature) {
+		this.feature = UChar.fromCharCode(this.codepoint, true).feature;
+	}
+};
+
+UChar.prototype.toString = function () {
+	var num;
+	if (this.codepoint < 0x10000) return String.fromCharCode(this.codepoint);
+	num = this.codepoint - 0x10000;
+	return String.fromCharCode(floor(num / 0x400) + 0xd800, num % 0x400 + 0xdc00);
+};
+
+UChar.prototype.getDecomp = function () {
+	this.prepFeature();
+	return this.feature[0] || null;
+};
+
+UChar.prototype.isCompatibility = function () {
+	this.prepFeature();
+	return Boolean(this.feature[1]) && this.feature[1] & (1 << 8);
+};
+UChar.prototype.isExclude = function () {
+	this.prepFeature();
+	return Boolean(this.feature[1]) && this.feature[1] & (1 << 9);
+};
+UChar.prototype.getCanonicalClass = function () {
+	this.prepFeature();
+	return this.feature[1] ? this.feature[1] & 0xff : 0;
+};
+UChar.prototype.getComposite = function (following) {
+	var cp;
+	this.prepFeature();
+	if (!this.feature[2]) return null;
+	cp = this.feature[2][following.codepoint];
+	return cp ? UChar.fromCharCode(cp) : null;
+};
+
+UCharIterator = function (str) {
+	this.str = str;
+	this.cursor = 0;
+};
+UCharIterator.prototype.next = function () {
+	if (Boolean(this.str) && this.cursor < this.str.length) {
+		var cp = this.str.charCodeAt(this.cursor++), d;
+		if (
+			UChar.isHighSurrogate(cp) &&
+			this.cursor < this.str.length &&
+			UChar.isLowSurrogate(d = this.str.charCodeAt(this.cursor))
+		) {
+			cp = (cp - 0xd800) * 0x400 + (d - 0xdc00) + 0x10000;
+			++this.cursor;
+		}
+		return UChar.fromCharCode(cp);
+	}
+	this.str = null;
+	return null;
+};
+
+RecursDecompIterator = function (it, cano) {
+	this.it = it;
+	this.canonical = cano;
+	this.resBuf = [];
+};
+
+RecursDecompIterator.prototype.next = function () {
+	var recursiveDecomp, uchar;
+	recursiveDecomp = function (cano, ucharLoc) {
+		var decomp = ucharLoc.getDecomp(), ret, i, a, j;
+		if (Boolean(decomp) && !(cano && ucharLoc.isCompatibility())) {
+			ret = [];
+			for (i = 0; i < decomp.length; ++i) {
+				a = recursiveDecomp(cano, UChar.fromCharCode(decomp[i]));
+				// Ret.concat(a); //<-why does not this work?
+				// following block is a workaround.
+				for (j = 0; j < a.length; ++j) ret.push(a[j]);
+			}
+			return ret;
+		}
+		return [ucharLoc];
+	};
+	if (this.resBuf.length === 0) {
+		uchar = this.it.next();
+		if (!uchar) return null;
+		this.resBuf = recursiveDecomp(this.canonical, uchar);
+	}
+	return this.resBuf.shift();
+};
+
+DecompIterator = function (it) {
+	this.it = it;
+	this.resBuf = [];
+};
+
+DecompIterator.prototype.next = function () {
+	var cc, uchar, inspt, uchar2, cc2;
+	if (this.resBuf.length === 0) {
+		do {
+			uchar = this.it.next();
+			if (!uchar) break;
+			cc = uchar.getCanonicalClass();
+			inspt = this.resBuf.length;
+			if (cc !== 0) {
+				for (inspt; inspt > 0; --inspt) {
+					uchar2 = this.resBuf[inspt - 1];
+					cc2 = uchar2.getCanonicalClass();
+					// eslint-disable-next-line max-depth
+					if (cc2 <= cc) break;
+				}
+			}
+			this.resBuf.splice(inspt, 0, uchar);
+		} while (cc !== 0);
+	}
+	return this.resBuf.shift();
+};
+
+CompIterator = function (it) {
+	this.it = it;
+	this.procBuf = [];
+	this.resBuf = [];
+	this.lastClass = null;
+};
+
+CompIterator.prototype.next = function () {
+	var uchar, starter, composite, cc;
+	while (this.resBuf.length === 0) {
+		uchar = this.it.next();
+		if (!uchar) {
+			this.resBuf = this.procBuf;
+			this.procBuf = [];
+			break;
+		}
+		if (this.procBuf.length === 0) {
+			this.lastClass = uchar.getCanonicalClass();
+			this.procBuf.push(uchar);
+		} else {
+			starter = this.procBuf[0];
+			composite = starter.getComposite(uchar);
+			cc = uchar.getCanonicalClass();
+			if (Boolean(composite) && (this.lastClass < cc || this.lastClass === 0)) {
+				this.procBuf[0] = composite;
+			} else {
+				if (cc === 0) {
+					this.resBuf = this.procBuf;
+					this.procBuf = [];
+				}
+				this.lastClass = cc;
+				this.procBuf.push(uchar);
+			}
+		}
+	}
+	return this.resBuf.shift();
+};
+
+createIterator = function (mode, str) {
+	switch (mode) {
+		case "NFD":
+			return new DecompIterator(new RecursDecompIterator(new UCharIterator(str), true));
+		case "NFKD":
+			return new DecompIterator(new RecursDecompIterator(new UCharIterator(str), false));
+		case "NFC":
+			return new CompIterator(
+				new DecompIterator(new RecursDecompIterator(new UCharIterator(str), true))
+			);
+		case "NFKC":
+			return new CompIterator(
+				new DecompIterator(new RecursDecompIterator(new UCharIterator(str), false))
+			);
+		default:
+			throw new Error(mode + " is invalid");
+	}
+};
+normalize = function (mode, str) {
+	var it = createIterator(mode, str), ret = "", uchar;
+	while ((uchar = it.next())) ret += uchar.toString();
+	return ret;
+};
+
+/* Unicode data */
+UChar.udata = data;
+
+module.exports = function (/* Form*/) {
+	var str = String(validValue(this)), form = arguments[0];
+	if (form === undefined) form = "NFC";
+	else form = String(form);
+	if (!forms[form]) throw new RangeError("Invalid normalization form: " + form);
+	return normalize(form, str);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/pad.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/pad.js
new file mode 100644
index 0000000000..159f89519e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/pad.js
@@ -0,0 +1,18 @@
+"use strict";
+
+var toInteger = require("../../number/to-integer")
+  , value     = require("../../object/valid-value")
+  , repeat    = require("./repeat")
+
+  , abs = Math.abs, max = Math.max;
+
+module.exports = function (fill/*, length*/) {
+	var self = String(value(this))
+	  , sLength = self.length
+	  , length = arguments[1];
+
+	length = isNaN(length) ? 1 : toInteger(length);
+	fill = repeat.call(String(fill), abs(length));
+	if (length >= 0) return fill.slice(0, max(0, length - sLength)) + self;
+	return self + ((sLength + length) >= 0 ? "" : fill.slice(length + sLength));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/plain-replace-all.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/plain-replace-all.js
new file mode 100644
index 0000000000..9334fe09d3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/plain-replace-all.js
@@ -0,0 +1,16 @@
+"use strict";
+
+var value = require("../../object/valid-value");
+
+module.exports = function (search, replace) {
+	var index, pos = 0, str = String(value(this)), sl, rl;
+	search = String(search);
+	replace = String(replace);
+	sl = search.length;
+	rl = replace.length;
+	while ((index = str.indexOf(search, pos)) !== -1) {
+		str = str.slice(0, index) + replace + str.slice(index + sl);
+		pos = index + rl;
+	}
+	return str;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/plain-replace.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/plain-replace.js
new file mode 100644
index 0000000000..f24f5215cb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/plain-replace.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var indexOf = String.prototype.indexOf, slice = String.prototype.slice;
+
+module.exports = function (search, replace) {
+	var index = indexOf.call(this, search);
+	if (index === -1) return String(this);
+	return slice.call(this, 0, index) + replace +
+		slice.call(this, index + String(search).length);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/implement.js
new file mode 100644
index 0000000000..7066b7b49b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/implement.js
@@ -0,0 +1,9 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(String.prototype, "repeat",
+		{ value: require("./shim"),
+configurable: true,
+enumerable: false,
+			writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/index.js
new file mode 100644
index 0000000000..99d44b2ef0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? String.prototype.repeat
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/is-implemented.js
new file mode 100644
index 0000000000..e8e02409c3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/is-implemented.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var str = "foo";
+
+module.exports = function () {
+	if (typeof str.repeat !== "function") return false;
+	return str.repeat(2) === "foofoo";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/shim.js
new file mode 100644
index 0000000000..ac259a83b6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/repeat/shim.js
@@ -0,0 +1,24 @@
+// Thanks
+// @rauchma http://www.2ality.com/2014/01/efficient-string-repeat.html
+// @mathiasbynens https://github.com/mathiasbynens/String.prototype.repeat/blob/4a4b567def/repeat.js
+
+"use strict";
+
+var value     = require("../../../object/valid-value")
+  , toInteger = require("../../../number/to-integer");
+
+module.exports = function (count) {
+	var str = String(value(this)), result;
+	count = toInteger(count);
+	if (count < 0) throw new RangeError("Count must be >= 0");
+	if (!isFinite(count)) throw new RangeError("Count must be < ∞");
+
+	result = "";
+	while (count) {
+		if (count % 2) result += str;
+		if (count > 1) str += str;
+		// eslint-disable-next-line no-bitwise
+		count >>= 1;
+	}
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/implement.js
new file mode 100644
index 0000000000..11613da22f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/implement.js
@@ -0,0 +1,9 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(String.prototype, "startsWith",
+		{ value: require("./shim"),
+configurable: true,
+enumerable: false,
+			writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/index.js
new file mode 100644
index 0000000000..9a6c3743d9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? String.prototype.startsWith
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/is-implemented.js
new file mode 100644
index 0000000000..f6b6e2960b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/is-implemented.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var str = "razdwatrzy";
+
+module.exports = function () {
+	if (typeof str.startsWith !== "function") return false;
+	return (str.startsWith("trzy") === false) &&
+		(str.startsWith("raz") === true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/shim.js
new file mode 100644
index 0000000000..d455477997
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/starts-with/shim.js
@@ -0,0 +1,12 @@
+"use strict";
+
+var value     = require("../../../object/valid-value")
+  , toInteger = require("../../../number/to-integer")
+
+  , max = Math.max, min = Math.min;
+
+module.exports = function (searchString/*, position*/) {
+	var start, self = String(value(this));
+	start = min(max(toInteger(arguments[1]), 0), self.length);
+	return self.indexOf(searchString, start) === start;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/#/uncapitalize.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/uncapitalize.js
new file mode 100644
index 0000000000..202dbb7386
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/#/uncapitalize.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var ensureStringifiable = require("../../object/validate-stringifiable-value");
+
+module.exports = function () {
+	var str = ensureStringifiable(this);
+	return str.charAt(0).toLowerCase() + str.slice(1);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/format-method.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/format-method.js
new file mode 100644
index 0000000000..28956fea21
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/format-method.js
@@ -0,0 +1,27 @@
+"use strict";
+
+var isCallable = require("../object/is-callable")
+  , value      = require("../object/valid-value")
+  , call       = Function.prototype.call;
+
+module.exports = function (fmap) {
+	fmap = Object(value(fmap));
+	return function (pattern) {
+		var context = this;
+		value(context);
+		pattern = String(pattern);
+		return pattern.replace(/%([a-zA-Z]+)|\\([\u0000-\uffff])/g, function (
+			match,
+			token,
+			escapeChar
+		) {
+			var t, result;
+			if (escapeChar) return escapeChar;
+			t = token;
+			while (t && !(result = fmap[t])) t = t.slice(0, -1);
+			if (!result) return match;
+			if (isCallable(result)) result = call.call(result, context);
+			return result + token.slice(t.length);
+		});
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/implement.js
new file mode 100644
index 0000000000..4f815d6be1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(String, "fromCodePoint", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/index.js
new file mode 100644
index 0000000000..d5a8112216
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? String.fromCodePoint
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/is-implemented.js
new file mode 100644
index 0000000000..e6ccfa7fa7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/is-implemented.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function () {
+	var fromCodePoint = String.fromCodePoint;
+	if (typeof fromCodePoint !== "function") return false;
+	return fromCodePoint(0x1D306, 0x61, 0x1D307) === "\ud834\udf06a\ud834\udf07";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/shim.js
new file mode 100644
index 0000000000..55824f5730
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/from-code-point/shim.js
@@ -0,0 +1,37 @@
+// Based on:
+// http://norbertlindenberg.com/2012/05/ecmascript-supplementary-characters/
+// and:
+// https://github.com/mathiasbynens/String.fromCodePoint/blob/master
+// /fromcodepoint.js
+
+"use strict";
+
+var floor = Math.floor, fromCharCode = String.fromCharCode;
+
+// eslint-disable-next-line no-unused-vars
+module.exports = function (codePoint1 /*, …codePoints*/) {
+	var chars = [], length = arguments.length, i, codePoint, result = "";
+	for (i = 0; i < length; ++i) {
+		codePoint = Number(arguments[i]);
+		if (
+			!isFinite(codePoint) ||
+			codePoint < 0 ||
+			codePoint > 0x10ffff ||
+			floor(codePoint) !== codePoint
+		) {
+			throw new RangeError("Invalid code point " + codePoint);
+		}
+
+		if (codePoint < 0x10000) {
+			chars.push(codePoint);
+		} else {
+			codePoint -= 0x10000;
+			// eslint-disable-next-line no-bitwise
+			chars.push((codePoint >> 10) + 0xd800, codePoint % 0x400 + 0xdc00);
+		}
+		if (i + 1 !== length && chars.length <= 0x4000) continue;
+		result += fromCharCode.apply(null, chars);
+		chars.length = 0;
+	}
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/index.js
new file mode 100644
index 0000000000..4393588f10
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/index.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = {
+	"#": require("./#"),
+	"formatMethod": require("./format-method"),
+	"fromCodePoint": require("./from-code-point"),
+	"isString": require("./is-string"),
+	"random": require("./random"),
+	"randomUniq": require("./random-uniq"),
+	"raw": require("./raw")
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/is-string.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/is-string.js
new file mode 100644
index 0000000000..1b1e863090
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/is-string.js
@@ -0,0 +1,13 @@
+"use strict";
+
+var objToString = Object.prototype.toString, id = objToString.call("");
+
+module.exports = function (value) {
+	return (
+		typeof value === "string" ||
+		(value &&
+			typeof value === "object" &&
+			(value instanceof String || objToString.call(value) === id)) ||
+		false
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/random-uniq.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/random-uniq.js
new file mode 100644
index 0000000000..ea10a8167a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/random-uniq.js
@@ -0,0 +1,13 @@
+"use strict";
+
+var generated = Object.create(null), random = Math.random;
+
+module.exports = function () {
+	var str;
+	do {
+		str = random()
+			.toString(36)
+			.slice(2);
+	} while (generated[str]);
+	return str;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/random.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/random.js
new file mode 100644
index 0000000000..4ecec7fcd0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/random.js
@@ -0,0 +1,42 @@
+"use strict";
+
+var isValue         = require("../object/is-value")
+  , toNaturalNumber = require("../number/to-pos-integer");
+
+var generated = Object.create(null), random = Math.random, uniqTryLimit = 100;
+
+var getChunk = function () {
+	return random()
+		.toString(36)
+		.slice(2);
+};
+
+var getString = function (/* length */) {
+	var str = getChunk(), length = arguments[0];
+	if (!isValue(length)) return str;
+	while (str.length < length) str += getChunk();
+	return str.slice(0, length);
+};
+
+module.exports = function (/* options */) {
+	var options = Object(arguments[0]), length = options.length, isUnique = options.isUnique;
+
+	if (isValue(length)) length = toNaturalNumber(length);
+
+	var str = getString(length);
+	if (isUnique) {
+		var count = 0;
+		while (generated[str]) {
+			if (++count === uniqTryLimit) {
+				throw new Error(
+					"Cannot generate random string.\n" +
+						"String.random is not designed to effectively generate many short and " +
+						"unique random strings"
+				);
+			}
+			str = getString(length);
+		}
+		generated[str] = true;
+	}
+	return str;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/implement.js
new file mode 100644
index 0000000000..0f17df3f14
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+if (!require("./is-implemented")()) {
+	Object.defineProperty(String, "raw", { value: require("./shim"),
+		configurable: true,
+enumerable: false,
+writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/index.js
new file mode 100644
index 0000000000..e818dd56dd
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = require("./is-implemented")()
+	? String.raw
+	: require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/is-implemented.js
new file mode 100644
index 0000000000..8758108c0c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/is-implemented.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function () {
+	var raw = String.raw, test;
+	if (typeof raw !== "function") return false;
+	test = ["foo\nbar", "marko\n"];
+	test.raw = ["foo\\nbar", "marko\\n"];
+	return raw(test, "INSE\nRT") === "foo\\nbarINSE\nRTmarko\\n";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/shim.js
new file mode 100644
index 0000000000..8c52bb552a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/string/raw/shim.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var toPosInt   = require("../../number/to-pos-integer")
+  , validValue = require("../../object/valid-value")
+  , reduce     = Array.prototype.reduce;
+
+module.exports = function (callSite /*,  …substitutions*/) {
+	var args, rawValue = Object(validValue(Object(validValue(callSite)).raw));
+	if (!toPosInt(rawValue.length)) return "";
+	args = arguments;
+	return reduce.call(rawValue, function (str1, str2, i) {
+		return str1 + String(args[i]) + str2;
+	});
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/.eslintrc.json b/kbase-extension/static/ext_packages/igv/es5-ext/test/.eslintrc.json
new file mode 100644
index 0000000000..3ac4585bd7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/.eslintrc.json
@@ -0,0 +1,14 @@
+{
+  "globals": {
+    "Symbol": true
+  },
+  "rules": {
+    "consistent-this": "off",
+    "id-length": "off",
+    "no-empty-function": "off",
+    "no-eval": "off",
+    "no-new-wrappers": "off",
+    "no-prototype-builtins": "off",
+    "no-shadow": "off"
+  }
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/__tad.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/__tad.js
new file mode 100644
index 0000000000..883c379282
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/__tad.js
@@ -0,0 +1,3 @@
+"use strict";
+
+exports.context = null;
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/implement.js
new file mode 100644
index 0000000000..1a20aa82e4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/@@iterator/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/shim.js
new file mode 100644
index 0000000000..71b71d58a0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/@@iterator/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+exports.__generic = function (t, a) {
+	var iterator = t.call(this);
+	a.deep(iterator.next(), { value: "1", done: false });
+	a.deep(iterator.next(), { value: "2", done: false });
+	a.deep(iterator.next(), { value: "3", done: false });
+	a.deep(iterator.next(), { value: undefined, done: true });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/_compare-by-length.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/_compare-by-length.js
new file mode 100644
index 0000000000..a53d8470f6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/_compare-by-length.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var arr = [4, 5, 6], obj1 = { length: 8 }, obj2 = {}, obj3 = { length: 1 };
+
+	a.deep([arr, obj1, obj2, obj3].sort(t), [obj2, obj3, arr, obj1]);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/binary-search.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/binary-search.js
new file mode 100644
index 0000000000..04dfaefa46
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/binary-search.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var compare  = function (value) {
+ return this - value;
+};
+
+module.exports = function (t, a) {
+	var arr;
+	arr = [2, 5, 5, 8, 34, 67, 98, 345, 678];
+
+	// Highest, equal match
+	a(t.call(arr, compare.bind(1)), 0, "All higher");
+	a(t.call(arr, compare.bind(679)), arr.length - 1, "All lower");
+	a(t.call(arr, compare.bind(4)), 0, "Mid");
+	a(t.call(arr, compare.bind(5)), 2, "Match");
+	a(t.call(arr, compare.bind(6)), 2, "Above");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/clear.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/clear.js
new file mode 100644
index 0000000000..640cc1926b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/clear.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var arr = [1, 2, {}, 4];
+	a(t.call(arr), arr, "Returns same array");
+	a.deep(arr, [], "Empties array");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/compact.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/compact.js
new file mode 100644
index 0000000000..05160844ed
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/compact.js
@@ -0,0 +1,17 @@
+"use strict";
+
+module.exports = {
+	"__generic": function (t, a) {
+		a(t.call(this).length, 3);
+	},
+	"": function (t, a) {
+		var o, x, y, z;
+		o = {};
+		x = [0, 1, "", null, o, false, undefined, true];
+		y = x.slice(0);
+
+		a.not(z = t.call(x), x, "Returns different object");
+		a.deep(x, y, "Origin not changed");
+		a.deep(z, [0, 1, "", o, false, true], "Result");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/implement.js
new file mode 100644
index 0000000000..c4dc41fa79
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/concat/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/shim.js
new file mode 100644
index 0000000000..30a9b0c62a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/concat/shim.js
@@ -0,0 +1,26 @@
+"use strict";
+
+var isConcatSpreadable = require("es6-symbol").isConcatSpreadable
+  , SubArray           = require("../../../../array/_sub-array-dummy-safe");
+
+module.exports = function (t, a) {
+	var arr = [1, 3, 45], x = {}, subArr, subArr2, result;
+
+	a.deep(t.call(arr, "2d", x, ["ere", "fe", x], false, null),
+		[1, 3, 45, "2d", x, "ere", "fe", x, false, null], "Plain array");
+
+	subArr = new SubArray("lol", "miszko");
+	subArr2 = new SubArray("elo", "fol");
+
+	result = t.call(subArr, "df", arr, "fef", subArr2, null);
+	a(result instanceof SubArray, true, "Instance of subclass");
+	a.deep(result, ["lol", "miszko", "df", 1, 3, 45, "fef", "elo", "fol", null],
+		"Spreable by default");
+
+	SubArray.prototype[isConcatSpreadable] = false;
+
+	result = t.call(subArr, "df", arr, "fef", subArr2, null);
+	a.deep(result, [subArr, "df", 1, 3, 45, "fef", subArr2, null], "Non spreadable");
+
+	delete SubArray.prototype[isConcatSpreadable];
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/contains.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/contains.js
new file mode 100644
index 0000000000..fb0f96ce8e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/contains.js
@@ -0,0 +1,21 @@
+"use strict";
+
+module.exports = {
+	"__generic": function (t, a) {
+		a(t.call(this, this[1]), true, "Contains");
+		a(t.call(this, {}), false, "Does Not contain");
+	},
+	"": function (t, a) {
+		var o, x = {}, y = {};
+
+		o = [1, "raz", x];
+
+		a(t.call(o, 1), true, "First");
+		a(t.call(o, "1"), false, "Type coercion");
+		a(t.call(o, "raz"), true, "Primitive");
+		a(t.call(o, "foo"), false, "Primitive not found");
+		a(t.call(o, x), true, "Object found");
+		a(t.call(o, y), false, "Object not found");
+		a(t.call(o, 1, 1), false, "Position");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/implement.js
new file mode 100644
index 0000000000..87272ac0fb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/copy-within/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/shim.js
new file mode 100644
index 0000000000..03a631fe27
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/copy-within/shim.js
@@ -0,0 +1,29 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var args, x;
+
+	a.h1("2 args");
+	x = [1, 2, 3, 4, 5];
+	t.call(x, 0, 3);
+	a.deep(x, [4, 5, 3, 4, 5]);
+	a.deep(t.call([1, 2, 3, 4, 5], 1, 3), [1, 4, 5, 4, 5]);
+	a.deep(t.call([1, 2, 3, 4, 5], 1, 2), [1, 3, 4, 5, 5]);
+	a.deep(t.call([1, 2, 3, 4, 5], 2, 2), [1, 2, 3, 4, 5]);
+
+	a.h1("3 args");
+	a.deep(t.call([1, 2, 3, 4, 5], 0, 3, 4), [4, 2, 3, 4, 5]);
+	a.deep(t.call([1, 2, 3, 4, 5], 1, 3, 4), [1, 4, 3, 4, 5]);
+	a.deep(t.call([1, 2, 3, 4, 5], 1, 2, 4), [1, 3, 4, 4, 5]);
+
+	a.h1("Negative args");
+	a.deep(t.call([1, 2, 3, 4, 5], 0, -2), [4, 5, 3, 4, 5]);
+	a.deep(t.call([1, 2, 3, 4, 5], 0, -2, -1), [4, 2, 3, 4, 5]);
+	a.deep(t.call([1, 2, 3, 4, 5], -4, -3, -2), [1, 3, 3, 4, 5]);
+	a.deep(t.call([1, 2, 3, 4, 5], -4, -3, -1), [1, 3, 4, 4, 5]);
+	a.deep(t.call([1, 2, 3, 4, 5], -4, -3), [1, 3, 4, 5, 5]);
+
+	a.h1("Array-likes");
+	args = { 0: 1, 1: 2, 2: 3, length: 3 };
+	a.deep(t.call(args, -2, 0), { 0: 1, 1: 1, 2: 2, length: 3 });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/diff.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/diff.js
new file mode 100644
index 0000000000..397c5ddfeb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/diff.js
@@ -0,0 +1,17 @@
+"use strict";
+
+module.exports = {
+	"__generic": function (t, a) {
+		a.deep(t.call(this, this), []);
+	},
+	"": function (t, a) {
+		var x = {}, y = {};
+
+		a.deep(t.call([1, "raz", x, 2, "trzy", y], [x, 2, "trzy"]), [1, "raz", y],
+			"Scope longer");
+		a.deep(t.call([1, "raz", x], [x, 2, "trzy", 1, y]), ["raz"],
+			"Arg longer");
+		a.deep(t.call([1, "raz", x], []), [1, "raz", x], "Empty arg");
+		a.deep(t.call([], [1, y, "sdfs"]), [], "Empty scope");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/e-index-of.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/e-index-of.js
new file mode 100644
index 0000000000..1e42cbd735
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/e-index-of.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x = {};
+	a(t.call([3, "raz", {}, x, {}], x), 3, "Regular");
+	a(t.call([3, "raz", NaN, {}, NaN], NaN), 2, "NaN");
+	a(t.call([3, "raz", 0, {}, -0], -0), 2, "-0");
+	a(t.call([3, "raz", -0, {}, 0], +0), 2, "+0");
+	a(t.call([3, "raz", NaN, {}, NaN], NaN, 3), 4, "fromIndex");
+	a(t.call([3, "raz", NaN, {}, NaN], NaN, -1), 4, "fromIndex negative #1");
+	a(t.call([3, "raz", NaN, {}, NaN], NaN, -2), 4, "fromIndex negative #2");
+	a(t.call([3, "raz", NaN, {}, NaN], NaN, -3), 2, "fromIndex negative #3");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/e-last-index-of.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/e-last-index-of.js
new file mode 100644
index 0000000000..2c7fff9fcc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/e-last-index-of.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x = {};
+	a(t.call([3, "raz", {}, x, {}, x], x), 5, "Regular");
+	a(t.call([3, "raz", NaN, {}, x], NaN), 2, "NaN");
+	a(t.call([3, "raz", 0, {}, -0], -0), 4, "-0");
+	a(t.call([3, "raz", -0, {}, 0], +0), 4, "+0");
+	a(t.call([3, "raz", NaN, {}, NaN], NaN, 3), 2, "fromIndex");
+	a(t.call([3, "raz", NaN, 2, NaN], NaN, -1), 4, "Negative fromIndex #1");
+	a(t.call([3, "raz", NaN, 2, NaN], NaN, -2), 2, "Negative fromIndex #2");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/implement.js
new file mode 100644
index 0000000000..fa16930c3f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/entries/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/shim.js
new file mode 100644
index 0000000000..87ac25a98d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/entries/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+exports.__generic = function (t, a) {
+	var iterator = t.call(this);
+	a.deep(iterator.next(), { value: [0, "1"], done: false });
+	a.deep(iterator.next(), { value: [1, "2"], done: false });
+	a.deep(iterator.next(), { value: [2, "3"], done: false });
+	a.deep(iterator.next(), { value: undefined, done: true });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/exclusion.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/exclusion.js
new file mode 100644
index 0000000000..827c037a32
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/exclusion.js
@@ -0,0 +1,15 @@
+"use strict";
+
+module.exports = {
+	"__generic": function (t, a) {
+		var x = {};
+		a.deep(t.call(this, this, [this[0], this[2], x]), [x]);
+	},
+	"": function (t, a) {
+		var x = {}, y = {};
+
+		a.deep(t.call([x, y]), [x, y], "No arguments");
+		a.deep(t.call([x, 1], [], []), [x, 1], "Empty arguments");
+		a.deep(t.call([1, "raz", x], [2, "raz", y], [2, "raz", x]), [1, y]);
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/implement.js
new file mode 100644
index 0000000000..fe806a6bfa
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/fill/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/shim.js
new file mode 100644
index 0000000000..c752e10b80
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/fill/shim.js
@@ -0,0 +1,18 @@
+// Taken from https://github.com/paulmillr/es6-shim/blob/master/test/array.js
+
+"use strict";
+
+module.exports = function (t, a) {
+	var x;
+
+	x = [1, 2, 3, 4, 5, 6];
+	a(t.call(x, -1), x, "Returns self object");
+	a.deep(x, [-1, -1, -1, -1, -1, -1], "Value");
+
+	a.deep(t.call([1, 2, 3, 4, 5, 6], -1, 3), [1, 2, 3, -1, -1, -1],
+		"Positive start");
+	a.deep(t.call([1, 2, 3, 4, 5, 6], -1, -3), [1, 2, 3, -1, -1, -1],
+		"Negative start");
+	a.deep(t.call([1, 2, 3, 4, 5, 6], -1, 9), [1, 2, 3, 4, 5, 6],
+		"Large start");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/implement.js
new file mode 100644
index 0000000000..cac92c83a0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/filter/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/shim.js
new file mode 100644
index 0000000000..e20a6511f0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/filter/shim.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var SubArray = require("../../../../array/_sub-array-dummy-safe");
+
+module.exports = function (t, a) {
+	var arr, x = {}, subArr, result;
+
+	arr = ["foo", undefined, 0, "2d", false, x, null];
+
+	a.deep(t.call(arr, Boolean), ["foo", "2d", x], "Plain array");
+
+	subArr = new SubArray("foo", undefined, 0, "2d", false, x, null);
+
+	result = t.call(subArr, Boolean);
+	a(result instanceof SubArray, true, "Instance of subclass");
+	a.deep(result, ["foo", "2d", x], "Result of subclass");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/implement.js
new file mode 100644
index 0000000000..341bedef49
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/find-index/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/shim.js
new file mode 100644
index 0000000000..0a6fe11357
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find-index/shim.js
@@ -0,0 +1,17 @@
+"use strict";
+
+exports.__generic = function (t, a) {
+	var count = 0, o = {}, self = Object(this);
+	a(t.call(self, function (value, i, scope) {
+		a(value, this[i], "Value");
+		a(i, count++, "Index");
+		a(scope, this, "Scope");
+	}, self), -1, "Falsy result");
+	a(count, 3);
+
+	count = -1;
+	a(t.call(this, function () {
+		return ++count ? o : null;
+	}, this), 1, "Truthy result");
+	a(count, 1);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/implement.js
new file mode 100644
index 0000000000..9333b25fb1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/find/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/shim.js
new file mode 100644
index 0000000000..b8fd9f060d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/find/shim.js
@@ -0,0 +1,17 @@
+"use strict";
+
+exports.__generic = function (t, a) {
+	var count = 0, o = {}, self = Object(this);
+	a(t.call(self, function (value, i, scope) {
+		a(value, this[i], "Value");
+		a(i, count++, "Index");
+		a(scope, this, "Scope");
+	}, self), undefined, "Falsy result");
+	a(count, 3);
+
+	count = -1;
+	a(t.call(this, function () {
+		return ++count ? o : null;
+	}, this), this[1], "Truthy result");
+	a(count, 1);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/first-index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/first-index.js
new file mode 100644
index 0000000000..af3388b556
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/first-index.js
@@ -0,0 +1,17 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x;
+	a(t.call([]), null, "Empty");
+	a(t.call([null]), 0, "One value");
+	a(t.call([1, 2, 3]), 0, "Many values");
+	a(t.call(new Array(1000)), null, "Sparse empty");
+	x = [];
+	x[883] = undefined;
+	x[890] = null;
+	a(t.call(x), 883, "Manual sparse, distant value");
+	x = new Array(1000);
+	x[657] = undefined;
+	x[700] = null;
+	a(t.call(x), 657, "Sparse, distant value");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/first.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/first.js
new file mode 100644
index 0000000000..5e9c1ae845
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/first.js
@@ -0,0 +1,13 @@
+"use strict";
+
+exports.__generic = function (t, a) {
+	a(t.call(this), this[0]);
+};
+exports[""] = function (t, a) {
+	var x;
+	a(t.call([]), undefined, "Empty");
+	a(t.call(new Array(234), undefined, "Sparse empty"));
+	x = new Array(2342);
+	x[434] = {};
+	a(t.call(x), x[434], "Sparse");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/flatten.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/flatten.js
new file mode 100644
index 0000000000..c1234c3ab6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/flatten.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var o = [1, 2, [3, 4, [5, 6], 7, 8], 9, 10, [11, 12, [13, 14]], 15];
+
+module.exports = {
+	"__generic": function (t, a) {
+		a(t.call(this).length, 3);
+	},
+	"Nested Arrays": function (t, a) {
+		var result = t.call(o);
+		a.not(o, result);
+		a.deep(result, [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]);
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/for-each-right.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/for-each-right.js
new file mode 100644
index 0000000000..109101f8b5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/for-each-right.js
@@ -0,0 +1,47 @@
+"use strict";
+
+module.exports = {
+	"__generic": function (t, a) {
+		var count = 0, first, last, x, icount = this.length;
+		t.call(this, function (item, index, col) {
+			++count;
+			if (!first) {
+				first = item;
+			}
+			last = item;
+			x = col;
+			a(index, --icount, "Index");
+		});
+		a(count, this.length, "Iterated");
+		a(first, this[this.length - 1], "First is last");
+		a(last, this[0], "Last is first");
+		a.deep(x, Object(this), "Collection as third argument"); // Jslint: skip
+	},
+	"": function (t, a) {
+		var x = {}, y, count;
+		t.call(
+			[1],
+			function () {
+				y = this;
+			},
+			x
+		);
+		a(y, x, "Scope");
+		y = 0;
+		t.call([3, 4, 4], function (a, i) {
+			y += i;
+		});
+		a(y, 3, "Indexes");
+
+		x = [1, 3];
+		x[5] = "x";
+		y = 0;
+		count = 0;
+		t.call(x, function (a, i) {
+			++count;
+			y += i;
+		});
+		a(y, 6, "Misssing Indexes");
+		a(count, 3, "Misssing Indexes, count");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/group.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/group.js
new file mode 100644
index 0000000000..12667de98c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/group.js
@@ -0,0 +1,24 @@
+"use strict";
+
+module.exports = {
+	"__generic": function (t, a) {
+		var count = 0, self;
+
+		self = Object(this);
+		a.deep(t.call(self, function (v, i, scope) {
+			a(v, this[i], "Value");
+			a(i, count++, "Index");
+			a(scope, this, "Scope");
+			return i;
+		}, self), { 0: [this[0]], 1: [this[1]], 2: [this[2]] });
+	},
+	"": function (t, a) {
+		var r;
+		r = t.call([2, 3, 3, 4, 5, 6, 7, 7, 23, 45, 34, 56],
+			function (v) {
+				return v % 2 ? "odd" : "even";
+			});
+		a.deep(r.odd, [3, 3, 5, 7, 7, 23, 45]);
+		a.deep(r.even, [2, 4, 6, 34, 56]);
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/indexes-of.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/indexes-of.js
new file mode 100644
index 0000000000..1463417d43
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/indexes-of.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = {
+	"__generic": function (t, a) {
+		a.deep(t.call(this, this[1]), [1]);
+	},
+	"": function (t, a) {
+		var x = {};
+		a.deep(t.call([1, 3, 5, 3, 5], 6), [], "No result");
+		a.deep(t.call([1, 3, 5, 1, 3, 5, 1], 1), [0, 3, 6], "Some results");
+		a.deep(t.call([], x), [], "Empty array");
+		a.deep(t.call([x, 3, {}, x, 3, 5, x], x), [0, 3, 6], "Search for object");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/intersection.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/intersection.js
new file mode 100644
index 0000000000..bb1097d1e1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/intersection.js
@@ -0,0 +1,24 @@
+"use strict";
+
+var toArray = require("../../../array/to-array");
+
+module.exports = {
+	"__generic": function (t, a) {
+		a.deep(t.call(this, this, this), toArray(this));
+	},
+	"": function (t, a) {
+		var x = {}, y = {}, p, r;
+		a.deep(t.call([], [2, 3, 4]), [], "Empty #1");
+		a.deep(t.call([2, 3, 4], []), [], "Empty #2");
+		a.deep(t.call([2, 3, x], [y, 5, 7]), [], "Different");
+		p = t.call([3, 5, "raz", {}, "dwa", x], [1, 3, "raz", "dwa", "trzy", x, {}],
+			[3, "raz", x, 65]);
+		r = [3, "raz", x];
+		p.sort();
+		r.sort();
+		a.deep(p, r, "Same parts");
+		a.deep(t.call(r, r), r, "Same");
+		a.deep(t.call([1, 2, x, 4, 5, y, 7], [7, y, 5, 4, x, 2, 1]),
+			[1, 2, x, 4, 5, y, 7], "Long reverse same");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/is-copy.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/is-copy.js
new file mode 100644
index 0000000000..b090c2acde
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/is-copy.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x = {};
+	a(t.call([], []), true, "Empty");
+	a(t.call([], {}), true, "Empty lists");
+	a(t.call([1, x, "raz"], [1, x, "raz"]), true, "Same");
+	a(t.call([1, x, "raz"], { 0: 1, 1: x, 2: "raz", length: 3 }), true,
+			"Same lists");
+	a(t.call([1, x, "raz"], [x, 1, "raz"]), false, "Diff order");
+	a(t.call([1, x], [1, x, "raz"]), false, "Diff length #1");
+	a(t.call([1, x, "raz"], [1, x]), false, "Diff length #2");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/is-empty.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/is-empty.js
new file mode 100644
index 0000000000..1e1c097b31
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/is-empty.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x = {};
+	a(t.call([]), true, "Empty");
+	a(t.call({ length: 0 }), true, "Empty lists");
+	a(t.call([1, x, "raz"]), false, "Non empty");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/is-uniq.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/is-uniq.js
new file mode 100644
index 0000000000..ab531ac513
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/is-uniq.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x = {};
+	a(t.call([]), true, "Empty");
+	a(t.call({}), true, "Empty lists");
+	a(t.call([1, x, "raz"]), true, "Uniq");
+	a(t.call([1, x, 1, "raz"]), false, "Not Uniq: primitive");
+	a(t.call([1, x, "1", "raz"]), true, "Uniq: primitive");
+	a(t.call([1, x, 1, {}, "raz"]), false, "Not Uniq: Obj");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/implement.js
new file mode 100644
index 0000000000..cc1f9316ad
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/keys/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/shim.js
new file mode 100644
index 0000000000..9be9a8f09c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/keys/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+exports.__generic = function (t, a) {
+	var iterator = t.call(this);
+	a.deep(iterator.next(), { value: 0, done: false });
+	a.deep(iterator.next(), { value: 1, done: false });
+	a.deep(iterator.next(), { value: 2, done: false });
+	a.deep(iterator.next(), { value: undefined, done: true });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/last-index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/last-index.js
new file mode 100644
index 0000000000..e66d16f141
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/last-index.js
@@ -0,0 +1,17 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x;
+	a(t.call([]), null, "Empty");
+	a(t.call([null]), 0, "One value");
+	a(t.call([1, 2, 3]), 2, "Many values");
+	a(t.call(new Array(1000)), null, "Sparse empty");
+	x = [];
+	x[883] = null;
+	x[890] = undefined;
+	a(t.call(x), 890, "Manual sparse, distant value");
+	x = new Array(1000);
+	x[657] = null;
+	x[700] = undefined;
+	a(t.call(x), 700, "Sparse, distant value");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/last.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/last.js
new file mode 100644
index 0000000000..6ca5d05390
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/last.js
@@ -0,0 +1,15 @@
+"use strict";
+
+exports.__generic = function (t, a) {
+	a(t.call(this), this[this.length - 1]);
+};
+
+exports[""] = function (t, a) {
+	var x;
+	a(t.call([]), undefined, "Empty");
+	a(t.call(new Array(234), undefined, "Sparse empty"));
+	x = new Array(2342);
+	x[434] = {};
+	x[450] = {};
+	a(t.call(x), x[450], "Sparse");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/implement.js
new file mode 100644
index 0000000000..26bb411582
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/map/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/shim.js
new file mode 100644
index 0000000000..02a5af2509
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/map/shim.js
@@ -0,0 +1,19 @@
+"use strict";
+
+var SubArray = require("../../../../array/_sub-array-dummy-safe");
+
+module.exports = function (t, a) {
+	var arr, x = {}, subArr, result;
+
+	arr = ["foo", undefined, 0, "2d", false, x, null];
+
+	a.deep(t.call(arr, Boolean), [true, false, false, true, false, true, false],
+		"Plain array");
+
+	subArr = new SubArray("foo", undefined, 0, "2d", false, x, null);
+
+	result = t.call(subArr, Boolean);
+	a(result instanceof SubArray, true, "Instance of subclass");
+	a.deep(result, [true, false, false, true, false, true, false],
+		"Result of subclass");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/remove.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/remove.js
new file mode 100644
index 0000000000..d67457ea9f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/remove.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var y = {}, z = {}, x = [9, z, 5, y, "foo"];
+	t.call(x, y);
+	a.deep(x, [9, z, 5, "foo"]);
+	t.call(x, {});
+	a.deep(x, [9, z, 5, "foo"], "Not existing");
+	t.call(x, 5);
+	a.deep(x, [9, z, "foo"], "Primitive");
+	x = [9, z, 5, y, "foo"];
+	t.call(x, z, 5, "foo");
+	a.deep(x, [9, y], "More than one argument");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/separate.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/separate.js
new file mode 100644
index 0000000000..9792637f31
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/separate.js
@@ -0,0 +1,15 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x = [], y = {}, z = {};
+	a.deep(t.call(x, y), [], "Empty");
+	a.not(t.call(x), x, "Returns copy");
+	a.deep(t.call([1], y), [1], "One");
+	a.deep(t.call([1, "raz"], y), [1, y, "raz"], "One");
+	a.deep(t.call([1, "raz", x], y), [1, y, "raz", y, x], "More");
+	x = new Array(1000);
+	x[23] = 2;
+	x[3453] = "raz";
+	x[500] = z;
+	a.deep(t.call(x, y), [2, y, z, y, "raz"], "Sparse");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/implement.js
new file mode 100644
index 0000000000..8c9b9be63e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/slice/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/shim.js
new file mode 100644
index 0000000000..f09ad13cff
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/slice/shim.js
@@ -0,0 +1,17 @@
+"use strict";
+
+var SubArray = require("../../../../array/_sub-array-dummy-safe");
+
+module.exports = function (t, a) {
+	var arr, x = {}, subArr, result;
+
+	arr = ["foo", undefined, 0, "2d", false, x, null];
+
+	a.deep(t.call(arr, 2, 4), [0, "2d"], "Plain array: result");
+
+	subArr = new SubArray("foo", undefined, 0, "2d", false, x, null);
+
+	result = t.call(subArr, 2, 4);
+	a(result instanceof SubArray, true, "Instance of subclass");
+	a.deep(result, [0, "2d"], "Subclass: result");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/some-right.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/some-right.js
new file mode 100644
index 0000000000..1e0f407e64
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/some-right.js
@@ -0,0 +1,62 @@
+"use strict";
+
+module.exports = {
+	"__generic": function (t, a) {
+		var count = 0, first, last, x, icount = this.length;
+		t.call(this, function (item, index, col) {
+			++count;
+			if (!first) {
+				first = item;
+			}
+			last = item;
+			x = col;
+			a(index, --icount, "Index");
+		});
+		a(count, this.length, "Iterated");
+		a(first, this[this.length - 1], "First is last");
+		a(last, this[0], "Last is first");
+		a.deep(x, Object(this), "Collection as third argument"); // Jslint: skip
+	},
+	"": function (t, a) {
+		var x = {}, y, count;
+		t.call(
+			[1],
+			function () {
+				y = this;
+			},
+			x
+		);
+		a(y, x, "Scope");
+		y = 0;
+		t.call([3, 4, 4], function (a, i) {
+			y += i;
+		});
+		a(y, 3, "Indexes");
+
+		x = [1, 3];
+		x[5] = "x";
+		y = 0;
+		count = 0;
+		a(
+			t.call(x, function (a, i) {
+				++count;
+				y += i;
+			}),
+			false,
+			"Return"
+		);
+		a(y, 6, "Misssing Indexes");
+		a(count, 3, "Misssing Indexes, count");
+
+		count = 0;
+		a(
+			t.call([-2, -3, -4, 2, -5], function (item) {
+				++count;
+				return item > 0;
+			}),
+			true,
+			"Return"
+		);
+		a(count, 2, "Break after true is returned");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/implement.js
new file mode 100644
index 0000000000..f09257a433
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/splice/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/shim.js
new file mode 100644
index 0000000000..480200784d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/splice/shim.js
@@ -0,0 +1,19 @@
+"use strict";
+
+var SubArray = require("../../../../array/_sub-array-dummy-safe");
+
+module.exports = function (t, a) {
+	var arr, x = {}, subArr, result;
+
+	arr = ["foo", undefined, 0, "2d", false, x, null];
+
+	a.deep(t.call(arr, 2, 2, "bar"), [0, "2d"], "Plain array: result");
+	a.deep(arr, ["foo", undefined, "bar", false, x, null], "Plain array: change");
+
+	subArr = new SubArray("foo", undefined, 0, "2d", false, x, null);
+
+	result = t.call(subArr, 2, 2, "bar");
+	a(result instanceof SubArray, true, "Instance of subclass");
+	a.deep(result, [0, "2d"], "Subclass: result");
+	a.deep(subArr, ["foo", undefined, "bar", false, x, null], "Subclass: change");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/uniq.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/uniq.js
new file mode 100644
index 0000000000..c7223b26ed
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/uniq.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = {
+	"__generic": function (t, a) {
+		a(t.call(this).length, 3);
+	},
+	"": function (t, a) {
+		var o, x = {}, y = {}, z = {}, w;
+		o = [1, 2, x, 3, 1, "raz", "1", y, x, "trzy", z, "raz"];
+
+		a.not(w = t.call(o), o, "Returns different object");
+		a.deep(w, [1, 2, x, 3, "raz", "1", y, "trzy", z], "Result");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/implement.js
new file mode 100644
index 0000000000..4ba7613aff
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../array/#/values/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/shim.js
new file mode 100644
index 0000000000..71b71d58a0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/#/values/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+exports.__generic = function (t, a) {
+	var iterator = t.call(this);
+	a.deep(iterator.next(), { value: "1", done: false });
+	a.deep(iterator.next(), { value: "2", done: false });
+	a.deep(iterator.next(), { value: "3", done: false });
+	a.deep(iterator.next(), { value: undefined, done: true });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/__scopes.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/__scopes.js
new file mode 100644
index 0000000000..bf47389f76
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/__scopes.js
@@ -0,0 +1,11 @@
+"use strict";
+
+exports.Array = ["1", "2", "3"];
+
+exports.Arguments = (function () {
+	return arguments;
+}("1", "2", "3"));
+
+exports.String = "123";
+
+exports.Object = { 0: "1", 1: "2", 2: "3", 3: "4", length: 3 };
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/_is-extensible.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/_is-extensible.js
new file mode 100644
index 0000000000..87881863b3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/_is-extensible.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(typeof t, "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/_sub-array-dummy-safe.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/_sub-array-dummy-safe.js
new file mode 100644
index 0000000000..6b42f4d159
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/_sub-array-dummy-safe.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isArray = Array.isArray;
+
+module.exports = function (t) {
+	t(t === null || isArray(t.prototype), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/_sub-array-dummy.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/_sub-array-dummy.js
new file mode 100644
index 0000000000..6b42f4d159
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/_sub-array-dummy.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isArray = Array.isArray;
+
+module.exports = function (t) {
+	t(t === null || isArray(t.prototype), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/implement.js
new file mode 100644
index 0000000000..2ed3788f91
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../array/from/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/shim.js
new file mode 100644
index 0000000000..17974c4be7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/from/shim.js
@@ -0,0 +1,138 @@
+// Some tests taken from: https://github.com/mathiasbynens/Array.from/blob/master/tests/tests.js
+
+"use strict";
+
+module.exports = function (t, a) {
+	var o = [1, 2, 3], MyType;
+	a.not(t(o), o, "Array");
+	a.deep(t(o), o, "Array: same content");
+	a.deep(t("12r3v"), ["1", "2", "r", "3", "v"], "String");
+	a.deep(
+		t(
+			(function () {
+				return arguments;
+			})(3, o, "raz")
+		),
+		[3, o, "raz"],
+		"Arguments"
+	);
+	a.deep(
+		t(
+			(function () {
+				return arguments;
+			})(3)
+		),
+		[3],
+		"Arguments with one numeric value"
+	);
+
+	a.deep(t({ 0: "raz", 1: "dwa", length: 2 }), ["raz", "dwa"], "Other");
+
+	a.deep(
+		t(
+			o,
+			function (val) {
+				return (val + 2) * 10;
+			},
+			10
+		),
+		[30, 40, 50],
+		"Mapping"
+	);
+
+	a.throws(
+		function () {
+			t();
+		},
+		TypeError,
+		"Undefined"
+	);
+	a.deep(t(3), [], "Primitive");
+
+	a(t.length, 1, "Length");
+	a.deep(t({ length: 0 }), [], "No values Array-like");
+	a.deep(t({ length: -1 }), [], "Invalid length Array-like");
+	a.deep(t({ length: -Infinity }), [], "Invalid length Array-like #2");
+	a.throws(
+		function () {
+			t(undefined);
+		},
+		TypeError,
+		"Undefined"
+	);
+	a.throws(
+		function () {
+			t(null);
+		},
+		TypeError,
+		"Null"
+	);
+	a.deep(t(false), [], "Boolean");
+	a.deep(t(-Infinity), [], "Inifity");
+	a.deep(t(-0), [], "-0");
+	a.deep(t(+0), [], "+0");
+	a.deep(t(1), [], "1");
+	a.deep(t(Number(Infinity)), [], "+Infinity");
+	a.deep(t({}), [], "Plain object");
+	a.deep(t({ length: 1 }), [undefined], "Sparse array-like");
+	a.deep(
+		t({ 0: "a", 1: "b", length: 2 }, function (x) {
+			return x + x;
+		}),
+		["aa", "bb"],
+		"Map"
+	);
+	a.deep(
+		t(
+			{ 0: "a", 1: "b", length: 2 },
+			function () {
+				return String(this);
+			},
+			undefined
+		),
+		["undefined", "undefined"],
+		"Map context"
+	);
+	a.deep(
+		t(
+			{ 0: "a", 1: "b", length: 2 },
+			function () {
+				return String(this);
+			},
+			"x"
+		),
+		["x", "x"],
+		"Map primitive context"
+	);
+	a.throws(
+		function () {
+			t({}, "foo", "x");
+		},
+		TypeError,
+		"Non callable for map"
+	);
+
+	a.deep(t({ length: 1, 0: "a" }), ["a"], "Null context");
+
+	a(t({ __proto__: { 0: "abc", length: 1 } })[0], "abc", "Values on prototype");
+
+	a.throws(
+		function () {
+			t.call(function () {
+				return Object.freeze({});
+			}, {});
+		},
+		TypeError,
+		"Contructor producing freezed objects"
+	);
+
+	// Ensure no setters are called for the indexes
+	// Ensure no setters are called for the indexes
+	MyType = function () {};
+	Object.defineProperty(MyType.prototype, "0", {
+		set: function (x) {
+			throw new Error("Setter called: " + x);
+		}
+	});
+	a.deep(t.call(MyType, { 0: "abc", length: 1 }), { 0: "abc", length: 1 }, "Defined not set");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/generate.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/generate.js
new file mode 100644
index 0000000000..efd5f7c8c0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/generate.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x = {}, y = {};
+	a.deep(t(3), [undefined, undefined, undefined], "Just length");
+	a.deep(t(0, "x"), [], "No repeat");
+	a.deep(t(1, x, y), [x], "Arguments length larger than repeat number");
+	a.deep(t(3, x), [x, x, x], "Single argument");
+	a.deep(t(5, x, y), [x, y, x, y, x], "Many arguments");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/is-plain-array.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/is-plain-array.js
new file mode 100644
index 0000000000..2cfd50d3b8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/is-plain-array.js
@@ -0,0 +1,18 @@
+"use strict";
+
+var SubArray = require("../../array/_sub-array-dummy-safe");
+
+module.exports = function (t, a) {
+	var arr = [1, 2, 3];
+	a(t(arr), true, "Array");
+	a(t(null), false, "Null");
+	a(t(), false, "Undefined");
+	a(t("234"), false, "String");
+	a(t(23), false, "Number");
+	a(t({}), false, "Plain object");
+	a(t({ length: 1, 0: "raz" }), false, "Array-like");
+	a(t(Object.create(arr)), false, "Array extension");
+	if (!SubArray) return;
+	a(t(new SubArray(23)), false, "Subclass instance");
+	a(t(Array.prototype), false, "Array.prototype");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/implement.js
new file mode 100644
index 0000000000..0b1f5c8f89
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../array/of/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/shim.js
new file mode 100644
index 0000000000..7d18859af5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/of/shim.js
@@ -0,0 +1,89 @@
+/* eslint no-useless-call: "off" */
+// Most tests taken from https://github.com/mathiasbynens/Array.of/blob/master/tests/tests.js
+// Thanks @mathiasbynens
+
+"use strict";
+
+var defineProperty = Object.defineProperty;
+
+module.exports = function (t, a) {
+	var x = {}, testObject, MyType;
+
+	a.deep(t(), [], "No arguments");
+	a.deep(t(3), [3], "One numeric argument");
+	a.deep(t(3, "raz", null, x, undefined), [3, "raz", null, x, undefined], "Many arguments");
+
+	a(t.length, 0, "Length");
+
+	a.deep(t("abc"), ["abc"], "String");
+	a.deep(t(undefined), [undefined], "Undefined");
+	a.deep(t(null), [null], "Null");
+	a.deep(t(false), [false], "Boolean");
+	a.deep(t(-Infinity), [-Infinity], "Infinity");
+	a.deep(t(-0), [-0], "-0");
+	a.deep(t(+0), [+0], "+0");
+	a.deep(t(1), [1], "1");
+	a.deep(t(1, 2, 3), [1, 2, 3], "Numeric args");
+	a.deep(t(Number(Infinity)), [Number(Infinity)], "+Infinity");
+	a.deep(
+		t({ 0: "a", 1: "b", 2: "c", length: 3 }),
+		[{ 0: "a", 1: "b", 2: "c", length: 3 }],
+		"Array like"
+	);
+	a.deep(
+		t(undefined, null, false, -Infinity, -0, +0, 1, 2, Number(Infinity)),
+		[undefined, null, false, -Infinity, -0, +0, 1, 2, Number(Infinity)],
+		"Falsy arguments"
+	);
+
+	a.h1("Null context");
+	a.deep(t.call(null, "abc"), ["abc"], "String");
+	a.deep(t.call(null, undefined), [undefined], "Undefined");
+	a.deep(t.call(null, null), [null], "Null");
+	a.deep(t.call(null, false), [false], "Boolean");
+	a.deep(t.call(null, -Infinity), [-Infinity], "-Infinity");
+	a.deep(t.call(null, -0), [-0], "-0");
+	a.deep(t.call(null, +0), [+0], "+0");
+	a.deep(t.call(null, 1), [1], "1");
+	a.deep(t.call(null, 1, 2, 3), [1, 2, 3], "Numeric");
+	a.deep(t.call(null, Number(Infinity)), [Number(Infinity)], "+Infinity");
+	a.deep(
+		t.call(null, { 0: "a", 1: "b", 2: "c", length: 3 }),
+		[{ 0: "a", 1: "b", 2: "c", length: 3 }],
+		"Array-like"
+	);
+	a.deep(
+		t.call(null, undefined, null, false, -Infinity, -0, +0, 1, 2, Number(Infinity)),
+		[undefined, null, false, -Infinity, -0, +0, 1, 2, Number(Infinity)],
+		"Falsy"
+	);
+
+	a.h1("Other constructor context");
+	a.deep(t.call(Object, 1, 2, 3), { 0: 1, 1: 2, 2: 3, length: 3 }, "Many arguments");
+
+	testObject = Object(3);
+	testObject[0] = 1;
+	testObject[1] = 2;
+	testObject[2] = 3;
+	testObject.length = 3;
+	a.deep(t.call(Object, 1, 2, 3), testObject, "Test object");
+	a(t.call(Object).length, 0, "No arguments");
+	a.throws(
+		function () {
+			t.call(function () {
+				return Object.freeze({});
+			});
+		},
+		TypeError,
+		"Frozen instance"
+	);
+
+	// Ensure no setters are called for the indexes
+	MyType = function () {};
+	defineProperty(MyType.prototype, "0", {
+		set: function (x) {
+			throw new Error("Setter called: " + x);
+		}
+	});
+	a.deep(t.call(MyType, "abc"), { 0: "abc", length: 1 }, "Define, not set");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/to-array.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/to-array.js
new file mode 100644
index 0000000000..a1f10a4a4a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/to-array.js
@@ -0,0 +1,27 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o = [1, 2, 3];
+	a(t(o), o, "Array");
+	a.deep(t("12r3v"), ["1", "2", "r", "3", "v"], "String");
+	a.deep(
+		t(
+			(function () {
+				return arguments;
+			})(3, o, "raz")
+		),
+		[3, o, "raz"],
+		"Arguments"
+	);
+	a.deep(
+		t(
+			(function () {
+				return arguments;
+			})(3)
+		),
+		[3],
+		"Arguments with one numeric value"
+	);
+
+	a.deep(t({ 0: "raz", 1: "dwa", length: 2 }), ["raz", "dwa"], "Other");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/array/valid-array.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/valid-array.js
new file mode 100644
index 0000000000..a3708b22db
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/array/valid-array.js
@@ -0,0 +1,30 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x;
+	a.throws(function () {
+ t();
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t(null);
+}, TypeError, "Null");
+	a.throws(function () {
+ t(0);
+}, TypeError, "Number");
+	a.throws(function () {
+ t(true);
+}, TypeError, "Boolean");
+	a.throws(function () {
+ t("raz");
+}, TypeError, "String");
+	a.throws(function () {
+ t(function () {});
+}, TypeError, "Function");
+	a.throws(function () {
+ t({});
+}, TypeError, "Object");
+	a.throws(function () {
+ t({ length: 0 });
+}, TypeError, "Array-like");
+	a(t(x = []), x, "Array");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/boolean/is-boolean.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/boolean/is-boolean.js
new file mode 100644
index 0000000000..e36b3f34e4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/boolean/is-boolean.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t("arar"), false, "String");
+	a(t(12), false, "Number");
+	a(t(false), true, "Boolean");
+	a(t(new Boolean(false)), true, "Boolean object");
+	a(t(new Date()), false, "Date");
+	a(t(new String("raz")), false, "String object");
+	a(t({}), false, "Plain object");
+	a(t(/a/), false, "Regular expression");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/copy.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/copy.js
new file mode 100644
index 0000000000..27c996bba5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/copy.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o = new Date(), o2;
+
+	o2 = t.call(o);
+	a.not(o, o2, "Different objects");
+	a.ok(o2 instanceof Date, "Instance of Date");
+	a(o.getTime(), o2.getTime(), "Same time");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/days-in-month.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/days-in-month.js
new file mode 100644
index 0000000000..ce2dd7754d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/days-in-month.js
@@ -0,0 +1,17 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call(new Date(2001, 0, 1)), 31, "January");
+	a(t.call(new Date(2001, 1, 1)), 28, "February");
+	a(t.call(new Date(2000, 1, 1)), 29, "February (leap)");
+	a(t.call(new Date(2001, 2, 1)), 31, "March");
+	a(t.call(new Date(2001, 3, 1)), 30, "April");
+	a(t.call(new Date(2001, 4, 1)), 31, "May");
+	a(t.call(new Date(2001, 5, 1)), 30, "June");
+	a(t.call(new Date(2001, 6, 1)), 31, "July");
+	a(t.call(new Date(2001, 7, 1)), 31, "August");
+	a(t.call(new Date(2001, 8, 1)), 30, "September");
+	a(t.call(new Date(2001, 9, 1)), 31, "October");
+	a(t.call(new Date(2001, 10, 1)), 30, "November");
+	a(t.call(new Date(2001, 11, 1)), 31, "December");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/floor-day.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/floor-day.js
new file mode 100644
index 0000000000..fa929d6839
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/floor-day.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call(new Date(2000, 0, 1, 13, 32, 34, 234)).valueOf(),
+		new Date(2000, 0, 1).valueOf());
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/floor-month.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/floor-month.js
new file mode 100644
index 0000000000..1df4ddbeb6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/floor-month.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call(new Date(2000, 0, 15, 13, 32, 34, 234)).valueOf(),
+		new Date(2000, 0, 1).valueOf());
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/floor-year.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/floor-year.js
new file mode 100644
index 0000000000..5b78b7dcf6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/floor-year.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call(new Date(2000, 5, 13, 13, 32, 34, 234)).valueOf(),
+		new Date(2000, 0, 1).valueOf());
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/format.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/format.js
new file mode 100644
index 0000000000..510b26b440
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/#/format.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var dt = new Date(2011, 2, 3, 3, 5, 5, 32);
+	a(t.call(dt, " %Y.%y.%m.%d.%H.%M.%S.%L "), " 2011.11.03.03.03.05.05.032 ");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/date/ensure-time-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/ensure-time-value.js
new file mode 100644
index 0000000000..39ddc23c42
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/ensure-time-value.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(12), 12, "Number in range");
+	a(t(12.23), 12, "Rounds number in range");
+	a(t(-12.63), -12, "Rounds negative number in range");
+	a.throws(
+		function () {
+			t(NaN);
+		},
+		TypeError,
+		"Throws on invalid"
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/date/is-date.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/is-date.js
new file mode 100644
index 0000000000..90ae8ad70f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/is-date.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t("arar"), false, "String");
+	a(t(12), false, "Number");
+	a(t(true), false, "Boolean");
+	a(t(new Date()), true, "Date");
+	a(t(new String("raz")), false, "String object");
+	a(t({}), false, "Plain object");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/date/is-time-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/is-time-value.js
new file mode 100644
index 0000000000..a21677c064
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/is-time-value.js
@@ -0,0 +1,15 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t("arar"), false, "String");
+	a(t(12), true, "Number in range");
+	a(t(true), true, "Boolean");
+	a(t(new Date()), true, "Date");
+	a(t({}), false, "Plain object");
+	a(t(NaN), false, "NaN");
+	a(t(Infinity), false, "Infinity");
+	a(t(8.64e17), false, "Beyond range");
+	a(t(8.64e15), true, "Below range");
+	a(t(-8.64e17), false, "Negative beyond range");
+	a(t(-8.64e15), true, "Negative below range");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/date/valid-date.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/valid-date.js
new file mode 100644
index 0000000000..2856cb6a86
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/date/valid-date.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var d = new Date();
+	a(t(d), d, "Date");
+	a.throws(function () {
+		t({});
+	}, "Object");
+	a.throws(function () {
+		t({ valueOf: function () {
+ return 20;
+} });
+	}, "Number object");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/error/#/throw.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/error/#/throw.js
new file mode 100644
index 0000000000..8c5d04eea3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/error/#/throw.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var e = new Error();
+	try {
+		t.call(e);
+	} catch (e2) {
+		a(e2, e);
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/error/custom.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/error/custom.js
new file mode 100644
index 0000000000..ca35c7666e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/error/custom.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var T = t, err = new T("My Error", "MY_ERROR", { errno: 123 });
+	a(err instanceof Error, true, "Instance of error");
+	a(err.constructor, Error, "Constructor");
+	a(err.name, "Error", "Name");
+	a(String(err), "Error: My Error", "String representation");
+	a(err.code, "MY_ERROR", "Code");
+	a(err.errno, 123, "Errno");
+	a(typeof err.stack, "string", "Stack trace");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/error/is-error.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/error/is-error.js
new file mode 100644
index 0000000000..423c7359e6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/error/is-error.js
@@ -0,0 +1,18 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(), false, "Undefined");
+	a(t(1), false, "Primitive");
+	a(t({}), false, "Objectt");
+	a(t({ toString: function () {
+ return "[object Error]";
+} }), false,
+		"Fake error");
+	a(t(new Error()), true, "Error");
+	a(t(new EvalError()), true, "EvalError");
+	a(t(new RangeError()), true, "RangeError");
+	a(t(new ReferenceError()), true, "ReferenceError");
+	a(t(new SyntaxError()), true, "SyntaxError");
+	a(t(new TypeError()), true, "TypeError");
+	a(t(new URIError()), true, "URIError");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/error/valid-error.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/error/valid-error.js
new file mode 100644
index 0000000000..7d032bf239
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/error/valid-error.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var e = new Error();
+	a(t(e), e, "Error");
+	a.throws(function () {
+		t({});
+	}, "Other");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/compose.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/compose.js
new file mode 100644
index 0000000000..433f3b4b13
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/compose.js
@@ -0,0 +1,15 @@
+"use strict";
+
+var f = function (a, b) {
+ return ["a", arguments.length, a, b];
+}
+  , g = function (a) {
+ return ["b", arguments.length].concat(a);
+}
+  , h = function (a) {
+ return ["c", arguments.length].concat(a);
+};
+
+module.exports = function (t, a) {
+	a.deep(t.call(h, g, f)(1, 2), ["c", 1, "b", 1, "a", 2, 1, 2]);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/copy.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/copy.js
new file mode 100644
index 0000000000..e7988ce742
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/copy.js
@@ -0,0 +1,22 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var foo = "raz", bar = "dwa";
+	// eslint-disable-next-line func-names
+	var fn = function marko(a, b) {
+		return this + a + b + foo + bar;
+	};
+	var result, o = {};
+
+	fn.prototype = o;
+
+	fn.foo = "raz";
+
+	result = t.call(fn);
+
+	a(result.length, fn.length, "Length");
+	a(result.name, fn.name, "Length");
+	a(result.call("marko", "el", "fe"), "markoelferazdwa", "Body");
+	a(result.prototype, fn.prototype, "Prototype");
+	a(result.foo, fn.foo, "Custom property");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/curry.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/curry.js
new file mode 100644
index 0000000000..c30313a0d4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/curry.js
@@ -0,0 +1,20 @@
+"use strict";
+
+var toArray = require("../../../array/to-array")
+
+  , f = function () {
+ return toArray(arguments);
+};
+
+module.exports = function (t, a) {
+	var x, y = {}, z;
+	a.deep(t.call(f, 0, 1, 2)(3), [], "0 arguments");
+	x = t.call(f, 5, {});
+	a(x.length, 5, "Length #1");
+	z = x(1, 2);
+	a(z.length, 3, "Length #2");
+	z = z(3, 4);
+	a(z.length, 1, "Length #1");
+	a.deep(z(5, 6), [1, 2, 3, 4, 5], "Many arguments");
+	a.deep(x(8, 3)(y, 45)("raz", 6), [8, 3, y, 45, "raz"], "Many arguments #2");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/lock.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/lock.js
new file mode 100644
index 0000000000..08ea9505c7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/lock.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call(function () {
+		return arguments.length;
+	})(1, 2, 3), 0);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/microtask-delay.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/microtask-delay.js
new file mode 100644
index 0000000000..8bd0dc1256
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/microtask-delay.js
@@ -0,0 +1,22 @@
+"use strict";
+
+var nextTick = require("next-tick");
+
+module.exports = function (t, a, d) {
+	var wasInvoked = false, args = [{}, {}], context = {};
+	var target = t.call(function () {
+		a(this, context);
+		a.deep(arguments, args);
+		wasInvoked = true;
+	});
+
+	nextTick(function () {
+		a(wasInvoked, false);
+		target.apply(context, args);
+		a(wasInvoked, false);
+		nextTick(function () {
+			a(wasInvoked, true);
+			d();
+		});
+	});
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/not.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/not.js
new file mode 100644
index 0000000000..64fff71500
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/not.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var identity = require("../../../function/identity")
+  , noop     = require("../../../function/noop");
+
+module.exports = function (t, a) {
+	a(t.call(identity)(""), true, "Falsy");
+	a(t.call(noop)(), true, "Undefined");
+	a(t.call(identity)({}), false, "Any object");
+	a(t.call(identity)(true), false, "True");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/partial.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/partial.js
new file mode 100644
index 0000000000..7e9428fa90
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/partial.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var toArray = require("../../../array/to-array")
+
+  , f = function () {
+ return toArray(arguments);
+};
+
+module.exports = function (t, a) {
+	a.deep(t.call(f, 1)(2, 3), [1, 2, 3]);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/spread.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/spread.js
new file mode 100644
index 0000000000..d082fcabcc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/spread.js
@@ -0,0 +1,10 @@
+"use strict";
+
+var f = function (a, b) {
+ return this[a] + this[b];
+}
+  , o = { a: 3, b: 4 };
+
+module.exports = function (t, a) {
+	a(t.call(f).call(o, ["a", "b"]), 7);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/to-string-tokens.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/to-string-tokens.js
new file mode 100644
index 0000000000..0691cc394e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/#/to-string-tokens.js
@@ -0,0 +1,33 @@
+/* eslint no-eval: "off" */
+
+"use strict";
+
+module.exports = function (t, a) {
+	a.deep(
+		t.call(function (a, b) {
+			return this[a] + this[b];
+		}),
+		{ args: "a, b", body: "\n\t\t\treturn this[a] + this[b];\n\t\t" }
+	);
+	a.deep(t.call(function () {}), { args: "", body: "" });
+	// eslint-disable-next-line no-unused-vars
+	a.deep(t.call(function (raz) {}), { args: "raz", body: "" });
+	a.deep(
+		t.call(function () {
+			Object();
+		}),
+		{ args: "", body: "\n\t\t\tObject();\n\t\t" }
+	);
+
+	try {
+		eval("(() => {})");
+	} catch (e) {
+		// Non ES2015 env
+		return;
+	}
+
+	a.deep(t.call(eval("(() => {})")), { args: "", body: "" });
+	a.deep(t.call(eval("((elo) => foo)")), { args: "elo", body: "foo" });
+	a.deep(t.call(eval("(elo => foo)")), { args: "elo", body: "foo" });
+	a.deep(t.call(eval("((elo, bar) => foo())")), { args: "elo, bar", body: "foo()" });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/_define-length.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/_define-length.js
new file mode 100644
index 0000000000..324e273c02
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/_define-length.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var foo = "raz", bar = "dwa"
+	  , fn = function (a, b) {
+ return this + a + b + foo + bar;
+}
+	  , result;
+
+	result = t(fn, 3);
+	a(result.call("marko", "el", "fe"), "markoelferazdwa", "Content");
+	a(result.length, 3, "Length");
+	a(result.prototype, fn.prototype, "Prototype");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/constant.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/constant.js
new file mode 100644
index 0000000000..4ba2d8983f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/constant.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var o = {};
+
+module.exports = function (t, a) {
+	a(t(o)(), o);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/identity.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/identity.js
new file mode 100644
index 0000000000..a5b0b1bc9f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/identity.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var o = {};
+
+module.exports = function (t, a) {
+	a(t(o), o);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/invoke.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/invoke.js
new file mode 100644
index 0000000000..6268f47e9e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/invoke.js
@@ -0,0 +1,9 @@
+"use strict";
+
+var constant = require("../../function/constant")
+
+  , o = { b: constant("c") };
+
+module.exports = function (t, a) {
+	a(t("b")(o), "c");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/is-arguments.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/is-arguments.js
new file mode 100644
index 0000000000..5bd54ac7e7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/is-arguments.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var args, dummy;
+	args = (function () {
+ return arguments;
+}());
+	dummy = { 0: 1, 1: 2 };
+	Object.defineProperty(dummy, "length", { value: 2 });
+	a(t(args), true, "Arguments");
+	a(t(dummy), false, "Dummy");
+	a(t([]), false, "Array");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/is-function.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/is-function.js
new file mode 100644
index 0000000000..fe89798514
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/is-function.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var o = { call: Function.prototype.call, apply: Function.prototype.apply };
+
+module.exports = function (t, a) {
+	a(t(function () {}), true, "Function is function");
+	a(t(o), false, "Plain object is not function");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/noop.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/noop.js
new file mode 100644
index 0000000000..34de85ab63
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/noop.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(typeof t(1, 2, 3), "undefined");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/pluck.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/pluck.js
new file mode 100644
index 0000000000..f8954c59db
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/pluck.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var o = { foo: "bar" };
+
+module.exports = function (t, a) {
+	a(t("foo")(o), o.foo);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/function/valid-function.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/valid-function.js
new file mode 100644
index 0000000000..30c0360845
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/function/valid-function.js
@@ -0,0 +1,22 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var f = function () {};
+	a(t(f), f, "Function");
+	// eslint-disable-next-line no-new-func
+	f = new Function();
+	a(t(f), f, "Function");
+	a.throws(function () {
+		t({});
+	}, "Object");
+	a.throws(function () {
+		t(/re/);
+	}, "RegExp");
+	a.throws(function () {
+		t({
+			call: function () {
+				return 20;
+			}
+		});
+	}, "Plain object");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/global.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/global.js
new file mode 100644
index 0000000000..554ad4ccd8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/global.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.ok(t && typeof t === "object");
+	a(typeof t.Array, "function");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/for-each.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/for-each.js
new file mode 100644
index 0000000000..d6c3872aa1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/for-each.js
@@ -0,0 +1,42 @@
+"use strict";
+
+var ArrayIterator = require("es6-iterator/array")
+
+  , slice = Array.prototype.slice;
+
+module.exports = function (t, a) {
+	var i = 0, x = ["raz", "dwa", "trzy"], y = {};
+	t(x, function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "Array " + i + "#");
+		a(this, y, "Array: context:  " + i++ + "#");
+	}, y);
+	i = 0;
+	t((function () {
+ return arguments;
+}("raz", "dwa", "trzy")), function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "Arguments" + i + "#");
+		a(this, y, "Arguments: context:  " + i++ + "#");
+	}, y);
+	i = 0;
+	t({ 0: "raz", 1: "dwa", 2: "trzy", length: 3 }, function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "Array-like" + i + "#");
+		a(this, y, "Array-like: context:  " + i++ + "#");
+	}, y);
+	i = 0;
+	t(x = "foo", function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "String " + i + "#");
+		a(this, y, "Regular String: context:  " + i++ + "#");
+	}, y);
+	i = 0;
+	x = ["r", "💩", "z"];
+	t("r💩z", function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "String " + i + "#");
+		a(this, y, "Unicode String: context:  " + i++ + "#");
+	}, y);
+	i = 0;
+	t(new ArrayIterator(x), function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "Iterator " + i + "#");
+		a(this, y, "Iterator: context:  " + i++ + "#");
+	}, y);
+
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/is.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/is.js
new file mode 100644
index 0000000000..04d34a83c0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/is.js
@@ -0,0 +1,28 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator;
+
+module.exports = function (t, a) {
+	var x;
+	a(t([]), true, "Array");
+	a(t(""), true, "String");
+	a(
+		t(
+			(function () {
+				return arguments;
+			})()
+		),
+		true,
+		"Arguments"
+	);
+	a(t({ length: 0 }), true, "List object");
+	a(t(function () {}), false, "Function");
+	a(t({}), false, "Plain object");
+	a(t(/raz/), false, "Regexp");
+	a(t(), false, "No argument");
+	a(t(null), false, "Null");
+	a(t(undefined), false, "Undefined");
+	x = {};
+	x[iteratorSymbol] = function () {};
+	a(t(x), true, "Iterable");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/validate-object.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/validate-object.js
new file mode 100644
index 0000000000..83a9ca15e7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/validate-object.js
@@ -0,0 +1,34 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator;
+
+module.exports = function (t, a) {
+	var x;
+	a.throws(function () {
+ t(0);
+}, TypeError, "0");
+	a.throws(function () {
+ t(false);
+}, TypeError, "false");
+	a.throws(function () {
+ t("");
+}, TypeError, "String");
+	a.throws(function () {
+ t({});
+}, TypeError, "Plain Object");
+	a.throws(function () {
+ t(function () {});
+}, TypeError, "Function");
+	a(t(x = new String("raz")), x, "String object"); // Jslint: ignore
+
+	a(t(x = { length: 1 }), x, "Array like");
+	a.throws(function () {
+ t();
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t(null);
+}, TypeError, "null");
+	x = {};
+	x[iteratorSymbol] = function () {};
+	a(t(x), x, "Iterable");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/validate.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/validate.js
new file mode 100644
index 0000000000..61cab5d38f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/iterable/validate.js
@@ -0,0 +1,32 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator;
+
+module.exports = function (t, a) {
+	var x;
+	a.throws(function () {
+ t(0);
+}, TypeError, "0");
+	a.throws(function () {
+ t(false);
+}, TypeError, "false");
+	a(t(""), "", "''");
+	a.throws(function () {
+ t({});
+}, TypeError, "Plain Object");
+	a.throws(function () {
+ t(function () {});
+}, TypeError, "Function");
+	a(t(x = new String("raz")), x, "String object"); // Jslint: ignore
+
+	a(t(x = { length: 1 }), x, "Array like");
+	a.throws(function () {
+ t();
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t(null);
+}, TypeError, "null");
+	x = {};
+	x[iteratorSymbol] = function () {};
+	a(t(x), x, "Iterable");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/json/safe-stringify.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/json/safe-stringify.js
new file mode 100644
index 0000000000..2d13f3def1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/json/safe-stringify.js
@@ -0,0 +1,26 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({ foo: "bar" }), JSON.stringify({ foo: "bar" }));
+	a(t({ foo: { elo: 12 } }), "{\"foo\":{\"elo\":12}}");
+	a(t({ foo: { elo: 12,
+mel: {
+		toJSON: function () {
+ throw new Error("Nu nu!");
+}
+	} } }), "{\"foo\":{\"elo\":12}}");
+	a(t({ foo: { elo: 12 },
+mel: {
+		toJSON: function () {
+ throw new Error("Nu nu!");
+}
+	} }), "{\"foo\":{\"elo\":12}}");
+	a(t({ foo: { elo: 12 },
+mel: [
+"raz", {
+		toJSON: function () {
+ throw new Error("Nu nu!");
+}
+	}, 0, 2
+] }), "{\"foo\":{\"elo\":12},\"mel\":[\"raz\",0,2]}");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/_decimal-adjust.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/_decimal-adjust.js
new file mode 100644
index 0000000000..6da15ecf8e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/_decimal-adjust.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (t, a) {
+	// Just sanity check, as real tests are in 'round', 'ceil' and 'floor' variants
+	a(t("round")(55.55, -1), 55.6);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/_pack-ieee754.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/_pack-ieee754.js
new file mode 100644
index 0000000000..7e56f7f299
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/_pack-ieee754.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.deep(t(1.337, 8, 23), [63, 171, 34, 209]);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/_unpack-ieee754.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/_unpack-ieee754.js
new file mode 100644
index 0000000000..52730f389b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/_unpack-ieee754.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.deep(t([63, 171, 34, 209], 8, 23), 1.3370000123977661);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/implement.js
new file mode 100644
index 0000000000..d7bcc28aeb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/acosh/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/shim.js
new file mode 100644
index 0000000000..17ac18193b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/acosh/shim.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(-1), NaN, "Negative");
+	a(t(0), NaN, "Zero");
+	a(t(0.5), NaN, "Below 1");
+	a(t(1), 0, "1");
+	a(t(2), 1.3169578969248166, "Other");
+	a(t(Infinity), Infinity, "Infinity");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/implement.js
new file mode 100644
index 0000000000..ab4b969146
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/asinh/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/shim.js
new file mode 100644
index 0000000000..a4328d2e1f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/asinh/shim.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(0), 0, "Zero");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(-Infinity), -Infinity, "-Infinity");
+	a(t(-2), -1.4436354751788103, "Negative");
+	a(t(2), 1.4436354751788103, "Positive");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/implement.js
new file mode 100644
index 0000000000..bcd3bd875f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/atanh/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/shim.js
new file mode 100644
index 0000000000..f58709cc4a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/atanh/shim.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(-2), NaN, "Less than -1");
+	a(t(2), NaN, "Greater than 1");
+	a(t(-1), -Infinity, "-1");
+	a(t(1), Infinity, "1");
+	a(t(0), 0, "Zero");
+	a(Math.round(t(0.5) * 1e15), 549306144334055, "Other");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/implement.js
new file mode 100644
index 0000000000..132e9296d1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/cbrt/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/shim.js
new file mode 100644
index 0000000000..fc1beee4c8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cbrt/shim.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(0), 0, "Zero");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(-Infinity), -Infinity, "-Infinity");
+	a(t(-1), -1, "-1");
+	a(t(1), 1, "1");
+	a(t(2), 1.2599210498948732, "Ohter");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/ceil-10.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/ceil-10.js
new file mode 100644
index 0000000000..1c4a386626
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/ceil-10.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(55.51, -1), 55.6);
+	a(t(51, 1), 60);
+	a(t(-55.59, -1), -55.5);
+	a(t(-59, 1), -50);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/implement.js
new file mode 100644
index 0000000000..36f529f15f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/clz32/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/shim.js
new file mode 100644
index 0000000000..4d8dd2fa0e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/clz32/shim.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(1), 31, "1");
+	a(t(1000), 22, "1000");
+	a(t(), 32, "No arguments");
+	a(t(Infinity), 32, "Infinity");
+	a(t(-Infinity), 32, "-Infinity");
+	a(t("foo"), 32, "String");
+	a(t(true), 31, "Boolean");
+	a(t(3.5), 30, "Float");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/implement.js
new file mode 100644
index 0000000000..6ad42efb04
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/cosh/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/shim.js
new file mode 100644
index 0000000000..0b917c7062
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/cosh/shim.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(0), 1, "Zero");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(-Infinity), Infinity, "-Infinity");
+	a(t(1), 1.5430806348152437, "1");
+	a(t(Number.MAX_VALUE), Infinity);
+	a(t(-Number.MAX_VALUE), Infinity);
+	a(t(Number.MIN_VALUE), 1);
+	a(t(-Number.MIN_VALUE), 1);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/implement.js
new file mode 100644
index 0000000000..7fb528a3eb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/expm1/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/shim.js
new file mode 100644
index 0000000000..cebb063c6c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/expm1/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(0), 0, "Zero");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(-Infinity), -1, "-Infinity");
+	a(t(1).toFixed(15), "1.718281828459045", "1");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/floor-10.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/floor-10.js
new file mode 100644
index 0000000000..a086d80fe3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/floor-10.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(55.59, -1), 55.5);
+	a(t(59, 1), 50);
+	a(t(-55.51, -1), -55.6);
+	a(t(-51, 1), -60);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/implement.js
new file mode 100644
index 0000000000..c7b9ad4a94
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/fround/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/shim.js
new file mode 100644
index 0000000000..0525bfab97
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/fround/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(0), 0, "Zero");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(-Infinity), -Infinity, "-Infinity");
+	a(t(1.337), 1.3370000123977661, "1");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/implement.js
new file mode 100644
index 0000000000..29c87fe93e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/hypot/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/shim.js
new file mode 100644
index 0000000000..89e4657c1e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/hypot/shim.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(), 0, "No arguments");
+	a(t(0, -0, 0), 0, "Zeros");
+	a(t(4, NaN, Infinity), Infinity, "Infinity");
+	a(t(4, NaN, -Infinity), Infinity, "Infinity");
+	a(t(4, NaN, 34), NaN, "NaN");
+	a(t(3, 4), 5, "#1");
+	a(t(3, 4, 5), 7.0710678118654755, "#2");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/implement.js
new file mode 100644
index 0000000000..b633a72b5f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/imul/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/shim.js
new file mode 100644
index 0000000000..a8d4e9060e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/imul/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(), 0, "No arguments");
+	a(t(0, 0), 0, "Zeros");
+	a(t(2, 4), 8, "#1");
+	a(t(-1, 8), -8, "#2");
+	a(t(0xfffffffe, 5), -10, "#3");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/implement.js
new file mode 100644
index 0000000000..afc9dab173
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/log10/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/shim.js
new file mode 100644
index 0000000000..d0696287f9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log10/shim.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(-0.5), NaN, "Less than 0");
+	a(t(0), -Infinity, "0");
+	a(t(1), 0, "1");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(2), 0.3010299956639812, "Other");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/implement.js
new file mode 100644
index 0000000000..baa2ab159f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/log1p/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/shim.js
new file mode 100644
index 0000000000..66b400ccde
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log1p/shim.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(-1.5), NaN, "Less than -1");
+	a(t(-1), -Infinity, "-1");
+	a(t(0), 0, "0");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(1), 0.6931471805599453, "Other");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/implement.js
new file mode 100644
index 0000000000..43bdf43601
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/log2/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/shim.js
new file mode 100644
index 0000000000..f587e3393a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/log2/shim.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(-0.5), NaN, "Less than 0");
+	a(t(0), -Infinity, "0");
+	a(t(1), 0, "1");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(3).toFixed(15), "1.584962500721156", "Other");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/round-10.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/round-10.js
new file mode 100644
index 0000000000..c7ae38c4a8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/round-10.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(55.55, -1), 55.6);
+	a(t(55.549, -1), 55.5);
+	a(t(55, 1), 60);
+	a(t(54.9, 1), 50);
+	a(t(-55.55, -1), -55.5);
+	a(t(-55.551, -1), -55.6);
+	a(t(-55, 1), -50);
+	a(t(-55.1, 1), -60);
+	a(t(1.005, -2), 1.01);
+	a(t(-1.005, -2), -1.0);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/implement.js
new file mode 100644
index 0000000000..409beb1f58
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/sign/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/shim.js
new file mode 100644
index 0000000000..071ea07e17
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sign/shim.js
@@ -0,0 +1,11 @@
+"use strict";
+
+var is = require("../../../object/is");
+
+module.exports = function (t, a) {
+	a(is(t(0), +0), true, "+0");
+	a(is(t(-0), -0), true, "-0");
+	a(t({}), NaN, true, "NaN");
+	a(t(-234234234), -1, "Negative");
+	a(t(234234234), 1, "Positive");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/implement.js
new file mode 100644
index 0000000000..ca4b5e7b5e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/sinh/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/shim.js
new file mode 100644
index 0000000000..f168a7f716
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/sinh/shim.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(0), 0, "Zero");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(-Infinity), -Infinity, "-Infinity");
+	a(t(1), 1.1752011936438014, "1");
+	a(t(Number.MAX_VALUE), Infinity);
+	a(t(-Number.MAX_VALUE), -Infinity);
+	a(t(Number.MIN_VALUE), 5e-324);
+	a(t(-Number.MIN_VALUE), -5e-324);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/implement.js
new file mode 100644
index 0000000000..8503711f45
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/tanh/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/shim.js
new file mode 100644
index 0000000000..5da3c08751
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/tanh/shim.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(0), 0, "Zero");
+	a(t(Infinity), 1, "Infinity");
+	a(t(-Infinity), -1, "-Infinity");
+	a(t(1), 0.7615941559557649, "1");
+	a(t(Number.MAX_VALUE), 1);
+	a(t(-Number.MAX_VALUE), -1);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/implement.js
new file mode 100644
index 0000000000..0d3374fc93
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../math/trunc/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/shim.js
new file mode 100644
index 0000000000..b80e868303
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/math/trunc/shim.js
@@ -0,0 +1,16 @@
+"use strict";
+
+var is = require("../../../object/is");
+
+module.exports = function (t, a) {
+	a(t({}), NaN, "NaN");
+	a(t(0), 0, "Zero");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(-Infinity), -Infinity, "-Infinity");
+	a(is(t(0.234), 0), true, "0");
+	a(is(t(-0.234), -0), true, "-0");
+	a(t(13.7), 13, "Positive #1");
+	a(t(12.3), 12, "Positive #2");
+	a(t(-12.3), -12, "Negative #1");
+	a(t(-14.7), -14, "Negative #2");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/#/pad.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/#/pad.js
new file mode 100644
index 0000000000..cc8aa5e402
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/#/pad.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call(78, 4), "0078");
+	a(t.call(65.12323, 4, 3), "0065.123", "Precision");
+	a(t.call(65, 4, 3), "0065.000", "Precision integer");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/epsilon/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/epsilon/implement.js
new file mode 100644
index 0000000000..d387b7c1e5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/epsilon/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../number/epsilon/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/epsilon/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/epsilon/index.js
new file mode 100644
index 0000000000..d20e5c3bc4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/epsilon/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(typeof t, "number");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/epsilon/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/epsilon/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/epsilon/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/implement.js
new file mode 100644
index 0000000000..5300de627b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../number/is-finite/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/shim.js
new file mode 100644
index 0000000000..8fa004fd44
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-finite/shim.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(2), true, "Number");
+	a(t("23"), false, "Not numeric");
+	a(t(NaN), false, "NaN");
+	a(t(Infinity), false, "Infinity");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/implement.js
new file mode 100644
index 0000000000..2290b25077
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../number/is-integer/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/shim.js
new file mode 100644
index 0000000000..e367990bb3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-integer/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(2), true, "Number");
+	a(t(2.34), false, "Float");
+	a(t("23"), false, "Not numeric");
+	a(t(NaN), false, "NaN");
+	a(t(Infinity), false, "Infinity");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/implement.js
new file mode 100644
index 0000000000..10fa084edb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../number/is-nan/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/shim.js
new file mode 100644
index 0000000000..31810474e9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-nan/shim.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(2), false, "Number");
+	a(t({}), false, "Not numeric");
+	a(t(NaN), true, "NaN");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-natural.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-natural.js
new file mode 100644
index 0000000000..8fe4dcc464
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-natural.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(2), true, "Number");
+	a(t(-2), false, "Negative");
+	a(t(2.34), false, "Float");
+	a(t("23"), false, "Not numeric");
+	a(t(NaN), false, "NaN");
+	a(t(Infinity), false, "Infinity");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-number.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-number.js
new file mode 100644
index 0000000000..9cd670c1bd
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-number.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(0), true, "Zero");
+	a(t(NaN), true, "NaN");
+	a(t(Infinity), true, "Infinity");
+	a(t(12), true, "Number");
+	a(t(false), false, "Boolean");
+	a(t(new Date()), false, "Date");
+	a(t(new Number(2)), true, "Number object");
+	a(t("asdfaf"), false, "String");
+	a(t(""), false, "Empty String");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/implement.js
new file mode 100644
index 0000000000..96f634b16e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../number/is-safe-integer/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/shim.js
new file mode 100644
index 0000000000..a4ea6913c7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/is-safe-integer/shim.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(2), true, "Number");
+	a(t(2.34), false, "Float");
+	a(t(Math.pow(2, 53)), false, "Too large");
+	a(t(Math.pow(2, 53) - 1), true, "Maximum");
+	a(t("23"), false, "Not numeric");
+	a(t(NaN), false, "NaN");
+	a(t(Infinity), false, "Infinity");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/max-safe-integer/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/max-safe-integer/implement.js
new file mode 100644
index 0000000000..1928f3410f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/max-safe-integer/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../number/max-safe-integer/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/max-safe-integer/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/max-safe-integer/index.js
new file mode 100644
index 0000000000..d20e5c3bc4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/max-safe-integer/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(typeof t, "number");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/max-safe-integer/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/max-safe-integer/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/max-safe-integer/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/min-safe-integer/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/min-safe-integer/implement.js
new file mode 100644
index 0000000000..f8b309a8c7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/min-safe-integer/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../number/min-safe-integer/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/min-safe-integer/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/min-safe-integer/index.js
new file mode 100644
index 0000000000..d20e5c3bc4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/min-safe-integer/index.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(typeof t, "number");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/min-safe-integer/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/min-safe-integer/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/min-safe-integer/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/to-integer.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/to-integer.js
new file mode 100644
index 0000000000..b7b975f568
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/to-integer.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), 0, "NaN");
+	a(t(20), 20, "Positive integer");
+	a(t("-20"), -20, "String negative integer");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(15.343), 15, "Float");
+	a(t(-15.343), -15, "Negative float");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/to-pos-integer.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/to-pos-integer.js
new file mode 100644
index 0000000000..27c7cdfae8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/to-pos-integer.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), 0, "NaN");
+	a(t(20), 20, "Positive integer");
+	a(t(-20), 0, "Negative integer");
+	a(t(Infinity), Infinity, "Infinity");
+	a(t(15.343), 15, "Float");
+	a(t(-15.343), 0, "Negative float");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/number/to-uint32.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/to-uint32.js
new file mode 100644
index 0000000000..7eea42f5f3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/number/to-uint32.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), 0, "Not numeric");
+	a(t(-4), 4294967292, "Negative");
+	a(t(133432), 133432, "Positive");
+	a(t(8589934592), 0, "Greater than maximum");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/_iterate.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/_iterate.js
new file mode 100644
index 0000000000..d7728f4297
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/_iterate.js
@@ -0,0 +1,30 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o = { raz: 1, dwa: 2, trzy: 3 }
+	  , o2 = {}, o3 = {}, arr, i = -1;
+
+	t = t("forEach");
+	t(o, function (value, name, self, index) {
+		o2[name] = value;
+		a(index, ++i, "Index");
+		a(self, o, "Self");
+		a(this, o3, "Scope");
+	}, o3);
+	a.deep(o2, o);
+
+	arr = [];
+	o2 = {};
+	i = -1;
+	t(o, function (value, name, self, index) {
+		arr.push(value);
+		o2[name] = value;
+		a(index, ++i, "Index");
+		a(self, o, "Self");
+		a(this, o3, "Scope");
+	}, o3, function (a, b) {
+		return o[b] - o[a];
+	});
+	a.deep(o2, o, "Sort by Values: Content");
+	a.deep(arr, [3, 2, 1], "Sort by Values: Order");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign-deep.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign-deep.js
new file mode 100644
index 0000000000..071eeb7394
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign-deep.js
@@ -0,0 +1,15 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o1 = { a: 1, b: 2 }, o2 = { b: 3, c: 4 };
+
+	a(t(o1, o2), o1, "Returns self");
+	a.deep(o1, { a: 1, b: 3, c: 4 }, "Single: content");
+
+	a.deep(t({}, o1, o2), { a: 1, b: 3, c: 4 }, "Multi argument");
+
+	var obj1 = { foo: { bar: 3, marko: true } }
+	  , obj2 = { foo: { elo: 12, marko: false }, miszka: [23] };
+	a.deep(t({}, obj1, obj2), { foo: { bar: 3, marko: false, elo: 12 }, miszka: [23] });
+	a(t(true), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/implement.js
new file mode 100644
index 0000000000..c3e0396bae
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../object/assign/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/shim.js
new file mode 100644
index 0000000000..360749076e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/assign/shim.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o1 = { a: 1, b: 2 }
+	  , o2 = { b: 3, c: 4 };
+
+	a(t(o1, o2), o1, "Returns self");
+	a.deep(o1, { a: 1, b: 3, c: 4 }, "Single: content");
+
+	a.deep(t({}, o1, o2), { a: 1, b: 3, c: 4 }, "Multi argument");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/clear.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/clear.js
new file mode 100644
index 0000000000..5735e7967c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/clear.js
@@ -0,0 +1,13 @@
+"use strict";
+
+var isEmpty = require("../../object/is-empty");
+
+module.exports = function (t, a) {
+	var x = {};
+	a(t(x), x, "Empty: Returns same object");
+	a(isEmpty(x), true, "Empty: Not changed");
+	x.foo = "raz";
+	x.bar = "dwa";
+	a(t(x), x, "Same object");
+	a(isEmpty(x), true, "Emptied");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/compact.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/compact.js
new file mode 100644
index 0000000000..353f6f3277
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/compact.js
@@ -0,0 +1,20 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x = {}, y = {}, z;
+	z = t(x);
+	a.not(z, x, "Returns different object");
+	a.deep(z, {}, "Empty on empty");
+
+	x = { foo: "bar",
+a: 0,
+b: false,
+c: "",
+d: "0",
+e: null,
+bar: y,
+		elo: undefined };
+	z = t(x);
+	a.deep(z, { foo: "bar", a: 0, b: false, c: "", d: "0", bar: y },
+		"Cleared null values");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/compare.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/compare.js
new file mode 100644
index 0000000000..23cc511607
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/compare.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var d = new Date();
+
+	a.ok(t(12, 3) > 0, "Numbers");
+	a.ok(t(2, 13) < 0, "Numbers #2");
+	a.ok(t("aaa", "aa") > 0, "Strings");
+	a.ok(t("aa", "ab") < 0, "Strings #2");
+	a(t("aa", "aa"), 0, "Strings same");
+	a(t(d, new Date(d.getTime())), 0, "Same date");
+	a.ok(t(d, new Date(d.getTime() + 1)) < 0, "Different date");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/copy-deep.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/copy-deep.js
new file mode 100644
index 0000000000..93813830f9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/copy-deep.js
@@ -0,0 +1,35 @@
+"use strict";
+
+var stringify = JSON.stringify;
+
+module.exports = function (t, a) {
+	var o = { 1: "raz", 2: "dwa", 3: "trzy" }, no = t(o);
+
+	a.not(no, o, "Return different object");
+	a(stringify(no), stringify(o), "Match properties and values");
+
+	o = {
+		foo: "bar",
+		raz: {
+			dwa: "dwa",
+			trzy: { cztery: "pięć", sześć: "siedem" },
+			osiem: {},
+			dziewięć: function () {}
+		},
+		dziesięć: 10,
+		jedenaście: ["raz", ["dwa", "trzy", { elo: "true" }]]
+	};
+	o.raz.rec = o;
+
+	no = t(o);
+	a.not(o.raz, no.raz, "Deep");
+	a.not(o.raz.trzy, no.raz.trzy, "Deep #2");
+	a(stringify(o.raz.trzy), stringify(no.raz.trzy), "Deep content");
+	a(no.raz.rec, no, "Recursive");
+	a.not(o.raz.osiem, no.raz.osiem, "Empty object");
+	a(o.raz["dziewięć"], no.raz["dziewięć"], "Function");
+	a.not(o["jedenaście"], no["jedenaście"]);
+	a.not(o["jedenaście"][1], no["jedenaście"][1]);
+	a.not(o["jedenaście"][1][2], no["jedenaście"][1][2]);
+	a(t(true), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/copy.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/copy.js
new file mode 100644
index 0000000000..a5e2c3480a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/copy.js
@@ -0,0 +1,30 @@
+"use strict";
+
+var stringify = JSON.stringify;
+
+module.exports = function (t, a) {
+	var o = { 1: "raz", 2: "dwa", 3: "trzy" }, no = t(o);
+
+	a.not(no, o, "Return different object");
+	a(stringify(no), stringify(o), "Match properties and values");
+
+	o = {
+		foo: "bar",
+		raz: {
+			dwa: "dwa",
+			trzy: { cztery: "pięć", sześć: "siedem" },
+			osiem: {},
+			dziewięć: function () {}
+		},
+		dziesięć: 10
+	};
+	o.raz.rec = o;
+
+	no = t(o);
+	a(o.raz, no.raz, "Shallow");
+
+	a.deep(t(o, ["foo"]), { foo: "bar" });
+	a.deep(t(Object.create(o), ["foo"]), { foo: "bar" });
+	a.deep(t(o, ["foo", "habla"]), { foo: "bar" });
+	a.deep(t(o, ["foo", "habla"], { ensure: true }), { foo: "bar", habla: undefined });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/count.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/count.js
new file mode 100644
index 0000000000..ec1c504502
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/count.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), 0, "Empty");
+	a(t({ raz: 1, dwa: null, trzy: undefined, cztery: 0 }), 4,
+		"Some properties");
+	a(t(Object.defineProperties({}, {
+		raz: { value: "raz" },
+		dwa: { value: "dwa", enumerable: true }
+	})), 1, "Some properties hidden");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/create.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/create.js
new file mode 100644
index 0000000000..c9f3029f68
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/create.js
@@ -0,0 +1,22 @@
+"use strict";
+
+var setPrototypeOf = require("../../object/set-prototype-of")
+
+  , getPrototypeOf = Object.getPrototypeOf;
+
+module.exports = function (t, a) {
+	var x = {}, obj;
+
+	a(getPrototypeOf(t(x)), x, "Normal object");
+	a(getPrototypeOf(t(null)),
+		(setPrototypeOf && setPrototypeOf.nullPolyfill) || null, "Null");
+
+	a.h1("Properties");
+	a.h2("Normal object");
+	a(getPrototypeOf(obj = t(x, { foo: { value: "bar" } })), x, "Prototype");
+	a(obj.foo, "bar", "Property");
+	a.h2("Null");
+	a(getPrototypeOf(obj = t(null, { foo: { value: "bar2" } })),
+		(setPrototypeOf && setPrototypeOf.nullPolyfill) || null, "Prototype");
+	a(obj.foo, "bar2", "Property");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-array.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-array.js
new file mode 100644
index 0000000000..fd3c32c979
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-array.js
@@ -0,0 +1,55 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var arr = [];
+	a(t(arr), arr, "Array");
+	a(t(""), "", "String");
+	var args = (function () {
+		return arguments;
+	}());
+	a(t(args), args, "Arguments");
+	var arrayLike = { length: 0 };
+	a(t(arrayLike), arrayLike, "Array like");
+	a.throws(
+		function () {
+			t(function () {});
+		},
+		TypeError,
+		"Function"
+	);
+	a.throws(
+		function () {
+			t({});
+		},
+		TypeError,
+		"Plain object"
+	);
+	a.throws(
+		function () {
+			t(/raz/);
+		},
+		TypeError,
+		"Regexp"
+	);
+	a.throws(
+		function () {
+			t();
+		},
+		TypeError,
+		"No argument"
+	);
+	a.throws(
+		function () {
+			t(null);
+		},
+		TypeError,
+		"Null"
+	);
+	a.throws(
+		function () {
+			t(undefined);
+		},
+		TypeError,
+		"Undefined"
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-finite-number.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-finite-number.js
new file mode 100644
index 0000000000..f1e6166b5c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-finite-number.js
@@ -0,0 +1,54 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.throws(
+		function () {
+			t(undefined);
+		},
+		TypeError,
+		"Undefined"
+	);
+	a.throws(
+		function () {
+			t(null);
+		},
+		TypeError,
+		"Null"
+	);
+	a(t(0), 0, "Zero");
+	a.throws(
+		function () {
+			t(NaN);
+		},
+		TypeError,
+		"NaN"
+	);
+	a.throws(
+		function () {
+			t(Infinity);
+		},
+		TypeError,
+		"Infinity"
+	);
+	a(t(12), 12, "Number");
+	a(t(false), 0, "Boolean");
+	a(t(new Date(1000000)), 1000000, "Date");
+	a(t(new Number(2)), 2, "Number object");
+	a.throws(
+		function () {
+			t("asdfaf");
+		},
+		TypeError,
+		"String"
+	);
+	a(t(""), 0, "Empty String");
+	if (typeof Symbol === "function") {
+		a.throws(
+			function () {
+				t(Symbol("test"));
+			},
+			TypeError,
+			"Symbol"
+		);
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-integer.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-integer.js
new file mode 100644
index 0000000000..03db9c3610
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-integer.js
@@ -0,0 +1,42 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.throws(
+		function () {
+			t(undefined);
+		},
+		TypeError,
+		"Undefined"
+	);
+	a.throws(
+		function () {
+			t(null);
+		},
+		TypeError,
+		"Null"
+	);
+	a(t(2), 2, "Number");
+	a(t(-2), -2, "Negative");
+	a.throws(
+		function () {
+			t(2.34);
+		},
+		TypeError,
+		"Float"
+	);
+	a(t("23"), 23, "Numeric string");
+	a.throws(
+		function () {
+			t(NaN);
+		},
+		TypeError,
+		"NaN"
+	);
+	a.throws(
+		function () {
+			t(Infinity);
+		},
+		TypeError,
+		"Infinity"
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-natural-number-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-natural-number-value.js
new file mode 100644
index 0000000000..9aaae370ad
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-natural-number-value.js
@@ -0,0 +1,24 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.throws(function () {
+ t(undefined);
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t(null);
+}, TypeError, "Null");
+	a(t(2), 2, "Number");
+	a.throws(function () {
+ t(-2);
+}, TypeError, "Negative");
+	a.throws(function () {
+ t(2.34);
+}, TypeError, "Float");
+	a(t("23"), 23, "Numeric string");
+	a.throws(function () {
+ t(NaN);
+}, TypeError, "NaN");
+	a.throws(function () {
+ t(Infinity);
+}, TypeError, "Infinity");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-natural-number.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-natural-number.js
new file mode 100644
index 0000000000..ff0e836af4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-natural-number.js
@@ -0,0 +1,22 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.throws(function () {
+ t(undefined);
+}, TypeError, "Undefined");
+	a(t(null), 0, "Null");
+	a(t(2), 2, "Number");
+	a.throws(function () {
+ t(-2);
+}, TypeError, "Negative");
+	a.throws(function () {
+ t(2.34);
+}, TypeError, "Float");
+	a(t("23"), 23, "Numeric string");
+	a.throws(function () {
+ t(NaN);
+}, TypeError, "NaN");
+	a.throws(function () {
+ t(Infinity);
+}, TypeError, "Infinity");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-plain-function.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-plain-function.js
new file mode 100644
index 0000000000..3306d3a5eb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-plain-function.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function (t, a) {
+	// Just sanity checks, as logic is tested at isPlainFunction
+	var fn = function () {};
+	a(t(fn), fn, "Function");
+	a.throws(
+		function () {
+			t({});
+		},
+		TypeError,
+		"Error"
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-promise.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-promise.js
new file mode 100644
index 0000000000..1af15bab75
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-promise.js
@@ -0,0 +1,32 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var promise;
+	a.throws(function () {
+ t();
+}, TypeError);
+	a.throws(function () {
+ t(null);
+}, TypeError);
+	a.throws(function () {
+ t("promise");
+}, TypeError);
+	a.throws(function () {
+ t({});
+}, TypeError);
+	a.throws(function () {
+ t(function () {});
+}, TypeError);
+	a.throws(function () {
+ t({ then: {} });
+}, TypeError);
+	promise = { then: function () {} };
+	a(t(promise), promise);
+	promise = function () {};
+	promise.then = {};
+	a.throws(function () {
+ t(promise);
+}, TypeError);
+	promise.then = function () {};
+	a(t(promise), promise);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-thenable.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-thenable.js
new file mode 100644
index 0000000000..151238bafe
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/ensure-thenable.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	// Just sanity checks as proper tests are at isThenable
+	var thenable = { then: function () {} };
+
+	a.throws(function () {
+		t({});
+	}, TypeError);
+	a(t(thenable), thenable);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/eq.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/eq.js
new file mode 100644
index 0000000000..8cad90aebf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/eq.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o = {};
+	a(t(o, {}), false, "Different objects");
+	a(t(o, o), true, "Same objects");
+	a(t("1", "1"), true, "Same primitive");
+	a(t("1", 1), false, "Different primitive types");
+	a(t(NaN, NaN), true, "NaN");
+	a(t(0, 0), true, "0,0");
+	a(t(0, -0), true, "0,-0");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/every.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/every.js
new file mode 100644
index 0000000000..7e837d22e2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/every.js
@@ -0,0 +1,21 @@
+"use strict";
+
+var o = { 1: 1, 2: 2, 3: 3 };
+
+module.exports = function (t, a) {
+	var o2 = {};
+	t(o, function (value, name) {
+		o2[name] = value;
+		return true;
+	});
+	a(JSON.stringify(o2), JSON.stringify(o), "Iterates");
+
+	a(t(o, function () {
+		return true;
+	}), true, "Succeeds");
+
+	a(t(o, function () {
+		return false;
+	}), false, "Fails");
+
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/filter.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/filter.js
new file mode 100644
index 0000000000..c714d23734
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/filter.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.deep(t({ 1: 1, 2: 2, 3: 3, 4: 4 },
+		function (value) {
+ return Boolean(value % 2);
+}), { 1: 1, 3: 3 });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/find-key.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/find-key.js
new file mode 100644
index 0000000000..d4a578ff3b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/find-key.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var o = { 1: 1, 2: 2, 3: 3 };
+
+module.exports = function (t, a) {
+	var o2 = {}, i = 0;
+	t(o, function (value, name) {
+		o2[name] = value;
+		return false;
+	});
+	a(JSON.stringify(o2), JSON.stringify(o), "Iterates");
+
+	a(t(o, function () {
+		++i;
+		return true;
+	}), "1", "Finds");
+	a(i, 1, "Stops iteration after condition is met");
+
+	a(t(o, function () {
+		return false;
+	}), undefined, "Fails");
+
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/find.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/find.js
new file mode 100644
index 0000000000..eea5124709
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/find.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var o = { 1: 1, 2: 2, 3: 3 };
+
+module.exports = function (t, a) {
+	var o2 = {}, i = 0;
+	t(o, function (value, name) {
+		o2[name] = value;
+		return false;
+	});
+	a(JSON.stringify(o2), JSON.stringify(o), "Iterates");
+
+	a(t(o, function () {
+		++i;
+		return true;
+	}), 1, "Finds");
+	a(i, 1, "Stops iteration after condition is met");
+
+	a(t(o, function () {
+		return false;
+	}), undefined, "Fails");
+
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/first-key.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/first-key.js
new file mode 100644
index 0000000000..6010ba11c5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/first-key.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x = {}, y = Object.create(null);
+	a(t(x), null, "Normal: Empty");
+	a(t(y), null, "Null extension: Empty");
+	x.foo = "raz";
+	x.bar = 343;
+	a(["foo", "bar"].indexOf(t(x)) !== -1, true, "Normal");
+	y.elo = "foo";
+	y.mar = "wew";
+	a(["elo", "mar"].indexOf(t(y)) !== -1, true, "Null extension");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/flatten.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/flatten.js
new file mode 100644
index 0000000000..277a97cfdb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/flatten.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.deep(t({ a: { aa: 1, ab: 2 }, b: { ba: 3, bb: 4 } }),
+		{ aa: 1, ab: 2, ba: 3, bb: 4 });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/for-each.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/for-each.js
new file mode 100644
index 0000000000..97c6399a88
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/for-each.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o = { raz: 1, dwa: 2, trzy: 3 }
+	  , o2 = {};
+	a(t(o, function (value, name) {
+		o2[name] = value;
+	}), undefined, "Return");
+	a.deep(o2, o);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/get-property-names.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/get-property-names.js
new file mode 100644
index 0000000000..a1d6377fe6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/get-property-names.js
@@ -0,0 +1,18 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o = { first: 1, second: 4 }, r1, r2;
+	o = Object.create(o, {
+		third: { value: null }
+	});
+	o.first = 2;
+	o = Object.create(o);
+	o.fourth = 3;
+
+	r1 = t(o);
+	r1.sort();
+	r2 = ["first", "second", "third", "fourth"]
+		.concat(Object.getOwnPropertyNames(Object.prototype));
+	r2.sort();
+	a.deep(r1, r2);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-array-like.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-array-like.js
new file mode 100644
index 0000000000..50f5ce596e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-array-like.js
@@ -0,0 +1,22 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t([]), true, "Array");
+	a(t(""), true, "String");
+	a(
+		t(
+			(function () {
+				return arguments;
+			})()
+		),
+		true,
+		"Arguments"
+	);
+	a(t({ length: 0 }), true, "List object");
+	a(t(function () {}), false, "Function");
+	a(t({}), false, "Plain object");
+	a(t(/raz/), false, "Regexp");
+	a(t(), false, "No argument");
+	a(t(null), false, "Null");
+	a(t(undefined), false, "Undefined");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-callable.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-callable.js
new file mode 100644
index 0000000000..415023e397
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-callable.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(function () {}), true, "Function");
+	a(t({}), false, "Object");
+	a(t(), false, "Undefined");
+	a(t(null), false, "Null");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-copy-deep.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-copy-deep.js
new file mode 100644
index 0000000000..9c8ad92572
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-copy-deep.js
@@ -0,0 +1,46 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x, y;
+
+	a(t({ 1: 1, 2: 2, 3: 3 }, { 1: 1, 2: 2, 3: 3 }), true, "Same");
+	a(t({ 1: 1, 2: 2, 3: 3 }, { 1: 1, 2: 2, 3: 4 }), false,
+		"Different property value");
+	a(t({ 1: 1, 2: 2, 3: 3 }, { 1: 1, 2: 2 }), false,
+		"Property only in source");
+	a(t({ 1: 1, 2: 2 }, { 1: 1, 2: 2, 3: 4 }), false,
+		"Property only in target");
+
+	a(t("raz", "dwa"), false, "String: diff");
+	a(t("raz", "raz"), true, "String: same");
+	a(t("32", 32), false, "String & Number");
+
+	a(t([1, "raz", true], [1, "raz", true]), true, "Array: same");
+	a(t([1, "raz", undefined], [1, "raz"]), false, "Array: diff");
+	a(t(["foo"], ["one"]), false, "Array: One value comparision");
+
+	x = { foo: { bar: { mar: {} } } };
+	y = { foo: { bar: { mar: {} } } };
+	a(t(x, y), true, "Deep");
+
+	a(t({ foo: { bar: { mar: "foo" } } }, { foo: { bar: { mar: {} } } }),
+		false, "Deep: false");
+
+	x = { foo: { bar: { mar: {} } } };
+	x.rec = { foo: x };
+
+	y = { foo: { bar: { mar: {} } } };
+	y.rec = { foo: x };
+
+	a(t(x, y), true, "Object: Infinite Recursion: Same #1");
+
+	x.rec.foo = y;
+	a(t(x, y), true, "Object: Infinite Recursion: Same #2");
+
+	x.rec.foo = x;
+	y.rec.foo = y;
+	a(t(x, y), true, "Object: Infinite Recursion: Same #3");
+
+	y.foo.bar.mar = "raz";
+	a(t(x, y), false, "Object: Infinite Recursion: Diff");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-copy.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-copy.js
new file mode 100644
index 0000000000..6052bb0519
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-copy.js
@@ -0,0 +1,18 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({ 1: 1, 2: 2, 3: 3 }, { 1: 1, 2: 2, 3: 3 }), true, "Same");
+	a(t({ 1: 1, 2: 2, 3: 3 }, { 1: 1, 2: 2, 3: 4 }), false,
+		"Different property value");
+	a(t({ 1: 1, 2: 2, 3: 3 }, { 1: 1, 2: 2 }), false,
+		"Property only in source");
+	a(t({ 1: 1, 2: 2 }, { 1: 1, 2: 2, 3: 4 }), false,
+		"Property only in target");
+
+	a(t("raz", "dwa"), false, "String: diff");
+	a(t("raz", "raz"), true, "String: same");
+	a(t("32", 32), false, "String & Number");
+
+	a(t([1, "raz", true], [1, "raz", true]), true, "Array: same");
+	a(t([1, "raz", undefined], [1, "raz"]), false, "Array: diff");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-empty.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-empty.js
new file mode 100644
index 0000000000..067b1621f0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-empty.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), true, "Empty");
+	a(t({ 1: 1 }), false, "Not empty");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-finite-number.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-finite-number.js
new file mode 100644
index 0000000000..6475fb6616
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-finite-number.js
@@ -0,0 +1,18 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(undefined), false, "Undefined");
+	a(t(null), false, "Null");
+	a(t(0), true, "Zero");
+	a(t(NaN), false, "NaN");
+	a(t(Infinity), false, "Infinity");
+	a(t(12), true, "Number");
+	a(t(false), true, "Boolean");
+	a(t(new Date()), true, "Date");
+	a(t(new Number(2)), true, "Number object");
+	a(t("asdfaf"), false, "String");
+	a(t(""), true, "Empty String");
+	if (typeof Symbol === "function") {
+		a(t(Symbol("test")), false, "Symbol");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-integer.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-integer.js
new file mode 100644
index 0000000000..a0bcd5cda1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-integer.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(undefined), false, "Undefined");
+	a(t(null), false, "Null");
+	a(t(2), true, "Number");
+	a(t(-2), true, "Negative");
+	a(t(2.34), false, "Float");
+	a(t("23"), true, "Numeric string");
+	a(t(NaN), false, "NaN");
+	a(t(Infinity), false, "Infinity");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-natural-number-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-natural-number-value.js
new file mode 100644
index 0000000000..2bc2b1c8d8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-natural-number-value.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(undefined), false, "Undefined");
+	a(t(null), false, "Null");
+	a(t(2), true, "Number");
+	a(t(-2), false, "Negative");
+	a(t(2.34), false, "Float");
+	a(t("23"), true, "Numeric string");
+	a(t(NaN), false, "NaN");
+	a(t(Infinity), false, "Infinity");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-natural-number.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-natural-number.js
new file mode 100644
index 0000000000..bb110e604f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-natural-number.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(undefined), false, "Undefined");
+	a(t(null), true, "Null");
+	a(t(2), true, "Number");
+	a(t(-2), false, "Negative");
+	a(t(2.34), false, "Float");
+	a(t("23"), true, "Numeric string");
+	a(t(NaN), false, "NaN");
+	a(t(Infinity), false, "Infinity");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-number-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-number-value.js
new file mode 100644
index 0000000000..2c09d25172
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-number-value.js
@@ -0,0 +1,18 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(undefined), false, "Undefined");
+	a(t(null), false, "Null");
+	a(t(0), true, "Zero");
+	a(t(NaN), false, "NaN");
+	a(t(Infinity), true, "Infinity");
+	a(t(12), true, "Number");
+	a(t(false), true, "Boolean");
+	a(t(new Date()), true, "Date");
+	a(t(new Number(2)), true, "Number object");
+	a(t("asdfaf"), false, "String");
+	a(t(""), true, "Empty String");
+	if (typeof Symbol === "function") {
+		a(t(Symbol("test")), false, "Symbol");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-object.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-object.js
new file mode 100644
index 0000000000..0b83599784
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-object.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t("arar"), false, "String");
+	a(t(12), false, "Number");
+	a(t(true), false, "Boolean");
+	a(t(null), false, "Null");
+	a(t(new Date()), true, "Date");
+	a(t(new String("raz")), true, "String object");
+	a(t({}), true, "Plain object");
+	a(t(/a/), true, "Regular expression");
+	a(t(function () {}), true, "Function");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-plain-function.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-plain-function.js
new file mode 100644
index 0000000000..9c1f5ed389
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-plain-function.js
@@ -0,0 +1,42 @@
+"use strict";
+
+var setPrototypeOf = require("../../object/set-prototype-of");
+
+module.exports = function (t, a) {
+	a(t(function () {}), true, "Function");
+	a(t({}), false, "Object");
+	a(t(), false, "Undefined");
+	a(t(null), false, "Null");
+	if (setPrototypeOf) {
+		a(
+			t(Object.setPrototypeOf(function () {}, Object.prototype)),
+			false,
+			"Function with non-function prototype"
+		);
+	}
+	var arrowfn;
+	try {
+		arrowfn = eval("(() => {})");
+	} catch (e) {}
+	if (arrowfn) {
+		a(t(arrowfn), true, "Arrow function");
+	}
+
+	var classFn;
+	try {
+		classFn = eval("(class {})");
+	} catch (e) {}
+	if (classFn) {
+		a(t(classFn), false, "Class");
+	}
+
+	var commentedClassFn;
+	try {
+		// Follows issue reported to ljhard/is-callable project:
+		// https://github.com/ljharb/is-callable/issues/4
+		commentedClassFn = eval("(class/*kkk*/\n//blah\n Bar\n//blah\n {})");
+	} catch (e) {}
+	if (commentedClassFn) {
+		a(t(commentedClassFn, false, "Class"), false, "Class with comments");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-plain-object.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-plain-object.js
new file mode 100644
index 0000000000..7324438d9b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-plain-object.js
@@ -0,0 +1,18 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t({}), true, "Empty {} is plain object");
+	a(t({ a: true }), true, "{} with property is plain object");
+	a(t({ prototype: 1, constructor: 2, __proto__: 3 }), true,
+		"{} with any property keys is plain object");
+	a(t(null), false, "Null is not plain object");
+	a(t("string"), false, "Primitive is not plain object");
+	a(t(function () {}), false, "Function is not plain object");
+	a(t(Object.create({})), false,
+		"Object whose prototype is not Object.prototype is not plain object");
+	a(t(Object.create(Object.prototype)), true,
+		"Object whose prototype is Object.prototype is plain object");
+	a(t(Object.create(null)), true,
+		"Object whose prototype is null is plain object");
+	a(t(Object.prototype), false, "Object.prototype");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-promise.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-promise.js
new file mode 100644
index 0000000000..18bf934d80
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-promise.js
@@ -0,0 +1,17 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var promise;
+	a(t(), false);
+	a(t(null), false);
+	a(t("promise"), false);
+	a(t({}), false);
+	a(t(function () {}), false);
+	a(t({ then: {} }), false);
+	a(t({ then: function () {} }), true);
+	promise = function () {};
+	promise.then = {};
+	a(t(promise), false);
+	promise.then = function () {};
+	a(t(promise), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-thenable.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-thenable.js
new file mode 100644
index 0000000000..18bf934d80
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-thenable.js
@@ -0,0 +1,17 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var promise;
+	a(t(), false);
+	a(t(null), false);
+	a(t("promise"), false);
+	a(t({}), false);
+	a(t(function () {}), false);
+	a(t({ then: {} }), false);
+	a(t({ then: function () {} }), true);
+	promise = function () {};
+	promise.then = {};
+	a(t(promise), false);
+	promise.then = function () {};
+	a(t(promise), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-value.js
new file mode 100644
index 0000000000..c97722d0a8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is-value.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(), false);
+	a(t(undefined), false);
+	a(t(null), false);
+	a(t(NaN), true);
+	a(t(0), true);
+	a(t(false), true);
+	a(t("null"), true);
+	a(t(""), true);
+	a(t({}), true);
+	a(t(Object.prototype), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is.js
new file mode 100644
index 0000000000..c94ed41c78
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/is.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o = {};
+	a(t(o, {}), false, "Different objects");
+	a(t(o, o), true, "Same objects");
+	a(t("1", "1"), true, "Same primitive");
+	a(t("1", 1), false, "Different primitive types");
+	a(t(NaN, NaN), true, "NaN");
+	a(t(0, 0), true, "0,0");
+	a(t(0, -0), false, "0,-0");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/key-of.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/key-of.js
new file mode 100644
index 0000000000..bf10ca03bf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/key-of.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x = {}, y = {}
+	  , o = { foo: "bar", raz: x, trzy: "cztery", five: "6" };
+
+	a(t(o, "bar"), "foo", "First property");
+	a(t(o, 6), null, "Primitive that's not there");
+	a(t(o, x), "raz", "Object");
+	a(t(o, y), null, "Object that's not there");
+	a(t(o, "6"), "five", "Last property");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/implement.js
new file mode 100644
index 0000000000..d364abed9b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../object/keys/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/shim.js
new file mode 100644
index 0000000000..47e6547ed4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/keys/shim.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.deep(t({ foo: "bar" }), ["foo"], "Object");
+	a.deep(t("raz"), ["0", "1", "2"], "Primitive");
+	a.throws(function () {
+ t();
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t(null);
+}, TypeError, "Undefined");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/map-keys.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/map-keys.js
new file mode 100644
index 0000000000..4598db21ac
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/map-keys.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.deep(t({ 1: 1, 2: 2, 3: 3 }, function (key, value) {
+		return "x" + (key + value);
+	}), { x11: 1, x22: 2, x33: 3 });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/map.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/map.js
new file mode 100644
index 0000000000..78c1ed346d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/map.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var obj = { 1: 1, 2: 2, 3: 3 };
+	a.deep(t(obj, function (value, key, context) {
+		a(context, obj, "Context argument");
+		return (value + 1) + key;
+	}), { 1: "21", 2: "32", 3: "43" });
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/mixin-prototypes.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/mixin-prototypes.js
new file mode 100644
index 0000000000..8745d9779e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/mixin-prototypes.js
@@ -0,0 +1,73 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o, o1, o2, x, y = {}, z = {};
+	o = { inherited: true, visible: 23 };
+	o1 = Object.create(o);
+	o1.visible = z;
+	o1.nonremovable = "raz";
+	Object.defineProperty(o1, "hidden", { value: "hidden" });
+
+	o2 = Object.defineProperties({}, { nonremovable: { value: y } });
+	o2.other = "other";
+
+	try {
+ t(o2, o1);
+} catch (ignore) {}
+
+	a(o2.visible, z, "Enumerable");
+	a(o1.hidden, "hidden", "Not Enumerable");
+	a(o2.propertyIsEnumerable("visible"), true, "Enumerable is enumerable");
+	a(o2.propertyIsEnumerable("hidden"), false,
+		"Not enumerable is not enumerable");
+
+	a(o2.inherited, true, "Extend deep");
+
+	a(o2.nonremovable, y, "Do not overwrite non configurable");
+	a(o2.other, "other", "Own kept");
+
+	x = {};
+	t(x, o2);
+	try {
+ t(x, o1);
+} catch (ignore) {}
+
+	a(x.visible, z, "Enumerable");
+	a(x.hidden, "hidden", "Not Enumerable");
+	a(x.propertyIsEnumerable("visible"), true, "Enumerable is enumerable");
+	a(x.propertyIsEnumerable("hidden"), false,
+		"Not enumerable is not enumerable");
+
+	a(x.inherited, true, "Extend deep");
+
+	a(x.nonremovable, y, "Ignored non configurable");
+	a(x.other, "other", "Other");
+
+	x.visible = 3;
+	a(x.visible, 3, "Writable is writable");
+
+	x = {};
+	t(x, o1);
+	a.throws(function () {
+		x.hidden = 3;
+	}, "Not writable is not writable");
+
+	x = {};
+	t(x, o1);
+	delete x.visible;
+	a.ok(!x.hasOwnProperty("visible"), "Configurable is configurable");
+
+	x = {};
+	t(x, o1);
+	a.throws(function () {
+		delete x.hidden;
+	}, "Not configurable is not configurable");
+
+	x = Object.defineProperty({}, "foo",
+		{ configurable: false, writable: true, enumerable: false, value: "bar" });
+
+	try {
+ t(x, { foo: "lorem" });
+} catch (ignore) {}
+	a(x.foo, "bar", "Writable, not enumerable");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/mixin.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/mixin.js
new file mode 100644
index 0000000000..d1905c17cf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/mixin.js
@@ -0,0 +1,75 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o, o1, o2, x, y = {}, z = {};
+	o = { inherited: true };
+	o1 = Object.create(o);
+	o1.visible = z;
+	o1.nonremovable = "raz";
+	Object.defineProperty(o1, "hidden", { value: "hidden" });
+
+	o2 = Object.defineProperties({}, { nonremovable: { value: y } });
+	o2.other = "other";
+
+	try {
+ t(o2, o1);
+} catch (ignore) {}
+
+	a(o2.visible, z, "Enumerable");
+	a(o1.hidden, "hidden", "Not Enumerable");
+	a(o2.propertyIsEnumerable("visible"), true, "Enumerable is enumerable");
+	a(o2.propertyIsEnumerable("hidden"), false,
+		"Not enumerable is not enumerable");
+
+	a(o2.hasOwnProperty("inherited"), false, "Extend only own");
+	a(o2.inherited, undefined, "Extend ony own: value");
+
+	a(o2.nonremovable, y, "Do not overwrite non configurable");
+	a(o2.other, "other", "Own kept");
+
+	x = {};
+	t(x, o2);
+	try {
+ t(x, o1);
+} catch (ignore) {}
+
+	a(x.visible, z, "Enumerable");
+	a(x.hidden, "hidden", "Not Enumerable");
+	a(x.propertyIsEnumerable("visible"), true, "Enumerable is enumerable");
+	a(x.propertyIsEnumerable("hidden"), false,
+		"Not enumerable is not enumerable");
+
+	a(x.hasOwnProperty("inherited"), false, "Extend only own");
+	a(x.inherited, undefined, "Extend ony own: value");
+
+	a(x.nonremovable, y, "Ignored non configurable");
+	a(x.other, "other", "Other");
+
+	x.visible = 3;
+	a(x.visible, 3, "Writable is writable");
+
+	x = {};
+	t(x, o1);
+	a.throws(function () {
+		x.hidden = 3;
+	}, "Not writable is not writable");
+
+	x = {};
+	t(x, o1);
+	delete x.visible;
+	a.ok(!x.hasOwnProperty("visible"), "Configurable is configurable");
+
+	x = {};
+	t(x, o1);
+	a.throws(function () {
+		delete x.hidden;
+	}, "Not configurable is not configurable");
+
+	x = Object.defineProperty({}, "foo",
+		{ configurable: false, writable: true, enumerable: false, value: "bar" });
+
+	try {
+ t(x, { foo: "lorem" });
+} catch (ignore) {}
+	a(x.foo, "bar", "Writable, not enumerable");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/normalize-options.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/normalize-options.js
new file mode 100644
index 0000000000..028864fec9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/normalize-options.js
@@ -0,0 +1,46 @@
+"use strict";
+
+var create = Object.create, defineProperty = Object.defineProperty;
+
+module.exports = function (t, a) {
+	var x = { foo: "raz", bar: "dwa" }, y;
+	y = t(x);
+	a.not(y, x, "Returns copy");
+	a.deep(y, x, "Plain");
+
+	x = { raz: "one", dwa: "two" };
+	defineProperty(x, "get", {
+		configurable: true,
+		enumerable: true,
+		get: function () {
+ return this.dwa;
+}
+	});
+	x = create(x);
+	x.trzy = "three";
+	x.cztery = "four";
+	x = create(x);
+	x.dwa = "two!";
+	x.trzy = "three!";
+	x.piec = "five";
+	x.szesc = "six";
+
+	a.deep(t(x), { raz: "one",
+dwa: "two!",
+trzy: "three!",
+cztery: "four",
+		piec: "five",
+szesc: "six",
+get: "two!" }, "Deep object");
+
+	a.deep(t({ marko: "raz", raz: "foo" }, x, { szesc: "elo", siedem: "bibg" }),
+		{ marko: "raz",
+raz: "one",
+dwa: "two!",
+trzy: "three!",
+cztery: "four",
+			piec: "five",
+szesc: "elo",
+siedem: "bibg",
+get: "two!" }, "Multiple options");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/primitive-set.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/primitive-set.js
new file mode 100644
index 0000000000..b5083d5ccb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/primitive-set.js
@@ -0,0 +1,15 @@
+"use strict";
+
+var getPropertyNames = require("../../object/get-property-names")
+  , isPlainObject    = require("../../object/is-plain-object");
+
+module.exports = function (t, a) {
+	var x = t();
+	a(isPlainObject(x), true, "Plain object");
+	a.deep(getPropertyNames(x), [], "No properties");
+	x.foo = "bar";
+	a.deep(getPropertyNames(x), ["foo"], "Extensible");
+
+	a.deep(t("raz", "dwa", 3), { raz: true, dwa: true, 3: true },
+		"Arguments handling");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/safe-traverse.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/safe-traverse.js
new file mode 100644
index 0000000000..acf49c0ed8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/safe-traverse.js
@@ -0,0 +1,15 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var obj = { foo: { bar: { lorem: 12 } } };
+	a(t(obj), obj, "No props");
+	a(t(obj, "foo"), obj.foo, "One");
+	a(t(obj, "raz"), undefined, "One: Fail");
+	a(t(obj, "foo", "bar"), obj.foo.bar, "Two");
+	a(t(obj, "dsd", "raz"), undefined, "Two: Fail #1");
+	a(t(obj, "foo", "raz"), undefined, "Two: Fail #2");
+	a(t(obj, "foo", "bar", "lorem"), obj.foo.bar.lorem, "Three");
+	a(t(obj, "dsd", "raz", "fef"), undefined, "Three: Fail #1");
+	a(t(obj, "foo", "raz", "asdf"), undefined, "Three: Fail #2");
+	a(t(obj, "foo", "bar", "asd"), undefined, "Three: Fail #3");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/serialize.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/serialize.js
new file mode 100644
index 0000000000..f0ca800cc4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/serialize.js
@@ -0,0 +1,45 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var fn = function (raz, dwa) {
+		return raz + dwa;
+	};
+	a(t(), "undefined", "Undefined");
+	a(t(null), "null", "Null");
+	a(t(null), "null", "Null");
+	a(t("raz"), "\"raz\"", "String");
+	a(t("raz\"ddwa\ntrzy"), "\"raz\\\"ddwa\\ntrzy\"", "String with escape");
+	a(t(false), "false", "Booelean");
+	a(t(fn), String(fn), "Function");
+
+	a(t(/raz-dwa/g), "/raz-dwa/g", "RegExp");
+	a(t(new Date(1234567)), "new Date(1234567)", "Date");
+	a(t([]), "[]", "Empty array");
+	a(
+		t([undefined, false, null, "raz\"ddwa\ntrzy", fn, /raz/g, new Date(1234567), ["foo"]]),
+		"[undefined,false,null,\"raz\\\"ddwa\\ntrzy\"," +
+			String(fn) +
+			",/raz/g,new Date(1234567),[\"foo\"]]",
+		"Rich Array"
+	);
+	a(t({}), "{}", "Empty object");
+	a(
+		t({
+			raz: undefined,
+			dwa: false,
+			trzy: null,
+			cztery: "raz\"ddwa\ntrzy",
+			piec: fn,
+			szesc: /raz/g,
+			siedem: new Date(1234567),
+			osiem: ["foo", 32],
+			dziewiec: { foo: "bar", dwa: 343 }
+		}),
+		"{\"raz\":undefined,\"dwa\":false,\"trzy\":null,\"cztery\":\"raz\\\"ddwa\\ntrzy\"," +
+			"\"piec\":" +
+			String(fn) +
+			",\"szesc\":/raz/g,\"siedem\":new Date(1234567),\"osiem\":[\"foo\",32]," +
+			"\"dziewiec\":{\"foo\":\"bar\",\"dwa\":343}}",
+		"Rich object"
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/implement.js
new file mode 100644
index 0000000000..5b8fb9e99f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var create        = require("../../../object/create")
+  , isImplemented = require("../../../object/set-prototype-of/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(create), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/index.js
new file mode 100644
index 0000000000..23619b0797
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/index.js
@@ -0,0 +1,27 @@
+"use strict";
+
+var create = require("../../../object/create")
+
+  , getPrototypeOf = Object.getPrototypeOf;
+
+module.exports = function (t, a) {
+	var x = {}, y = {};
+
+	if (t === null) return;
+	a(t(x, y), x, "Return self object");
+	a(getPrototypeOf(x), y, "Object");
+	a.throws(function () {
+ t(x);
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t("foo");
+}, TypeError, "Primitive");
+	a(getPrototypeOf(t(x, null)), t.nullPolyfill || null, "Null");
+	x = create(null);
+	a.h1("Change null prototype");
+	a(t(x, y), x, "Result");
+	a(getPrototypeOf(x), y, "Prototype");
+	a.h1("Set null prototype");
+	a(t(y, null), y, "Result");
+	a(getPrototypeOf(y), t.nullPolyfill || null, "Prototype");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/shim.js
new file mode 100644
index 0000000000..23619b0797
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/set-prototype-of/shim.js
@@ -0,0 +1,27 @@
+"use strict";
+
+var create = require("../../../object/create")
+
+  , getPrototypeOf = Object.getPrototypeOf;
+
+module.exports = function (t, a) {
+	var x = {}, y = {};
+
+	if (t === null) return;
+	a(t(x, y), x, "Return self object");
+	a(getPrototypeOf(x), y, "Object");
+	a.throws(function () {
+ t(x);
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t("foo");
+}, TypeError, "Primitive");
+	a(getPrototypeOf(t(x, null)), t.nullPolyfill || null, "Null");
+	x = create(null);
+	a.h1("Change null prototype");
+	a(t(x, y), x, "Result");
+	a(getPrototypeOf(x), y, "Prototype");
+	a.h1("Set null prototype");
+	a(t(y, null), y, "Result");
+	a(getPrototypeOf(y), t.nullPolyfill || null, "Prototype");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/some.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/some.js
new file mode 100644
index 0000000000..97e5d772d1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/some.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var o = { 1: 1, 2: 2, 3: 3 };
+
+module.exports = function (t, a) {
+	var o2 = {}, i = 0;
+	t(o, function (value, name) {
+		o2[name] = value;
+		return false;
+	});
+	a(JSON.stringify(o2), JSON.stringify(o), "Iterates");
+
+	a(t(o, function () {
+		++i;
+		return true;
+	}), true, "Succeeds");
+	a(i, 1, "Stops iteration after condition is met");
+
+	a(t(o, function () {
+		return false;
+	}), false, "Fails");
+
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/to-array.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/to-array.js
new file mode 100644
index 0000000000..cd11a05f2f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/to-array.js
@@ -0,0 +1,15 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var o = { 1: 1, 2: 2, 3: 3 }, o1 = {}
+	  , o2 = t(o, function (value, name, self) {
+		a(self, o, "Self");
+		a(this, o1, "Scope");
+		return value + Number(name);
+	}, o1);
+	a.deep(o2, [2, 4, 6]);
+
+	t(o).sort().forEach(function (item) {
+		a.deep(item, [item[0], o[item[0]]], "Default");
+	});
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/unserialize.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/unserialize.js
new file mode 100644
index 0000000000..5af3c77fe0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/unserialize.js
@@ -0,0 +1,41 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var fn = function (raz, dwa) {
+		return raz + dwa;
+	};
+	a(t("undefined"), undefined, "Undefined");
+	a(t("null"), null, "Null");
+	a(t("\"raz\""), "raz", "String");
+	a(t("\"raz\\\"ddwa\\ntrzy\""), "raz\"ddwa\ntrzy", "String with escape");
+	a(t("false"), false, "Booelean");
+	a(String(t(String(fn))), String(fn), "Function");
+
+	a.deep(t("/raz-dwa/g"), /raz-dwa/g, "RegExp");
+	a.deep(t("new Date(1234567)"), new Date(1234567), "Date");
+	a.deep(t("[]"), [], "Empty array");
+	a.deep(
+		t("[undefined,false,null,\"raz\\\"ddwa\\ntrzy\",/raz/g,new Date(1234567),[\"foo\"]]"),
+		[undefined, false, null, "raz\"ddwa\ntrzy", /raz/g, new Date(1234567), ["foo"]],
+		"Rich Array"
+	);
+	a.deep(t("{}"), {}, "Empty object");
+	a.deep(
+		t(
+			"{\"raz\":undefined,\"dwa\":false,\"trzy\":null,\"cztery\":\"raz\\\"ddwa\\ntrzy\"," +
+				"\"szesc\":/raz/g,\"siedem\":new Date(1234567),\"osiem\":[\"foo\",32]," +
+				"\"dziewiec\":{\"foo\":\"bar\",\"dwa\":343}}"
+		),
+		{
+			raz: undefined,
+			dwa: false,
+			trzy: null,
+			cztery: "raz\"ddwa\ntrzy",
+			szesc: /raz/g,
+			siedem: new Date(1234567),
+			osiem: ["foo", 32],
+			dziewiec: { foo: "bar", dwa: 343 }
+		},
+		"Rich object"
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/valid-callable.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/valid-callable.js
new file mode 100644
index 0000000000..fb7310c849
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/valid-callable.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var f = function () {};
+	a(t(f), f, "Function");
+	a.throws(function () {
+		t({});
+	}, "Not Function");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/valid-object.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/valid-object.js
new file mode 100644
index 0000000000..b33be9779a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/valid-object.js
@@ -0,0 +1,25 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x;
+	a.throws(function () {
+ t(0);
+}, TypeError, "0");
+	a.throws(function () {
+ t(false);
+}, TypeError, "false");
+	a.throws(function () {
+ t("");
+}, TypeError, "''");
+	a(t(x = {}), x, "Object");
+	a(t(x = function () {}), x, "Function");
+	a(t(x = new String("raz")), x, "String object"); // Jslint: ignore
+	a(t(x = new Date()), x, "Date");
+
+	a.throws(function () {
+ t();
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t(null);
+}, TypeError, "null");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/valid-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/valid-value.js
new file mode 100644
index 0000000000..394f89f774
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/valid-value.js
@@ -0,0 +1,19 @@
+"use strict";
+
+var numIsNaN = require("../../number/is-nan");
+
+module.exports = function (t, a) {
+	var x;
+	a(t(0), 0, "0");
+	a(t(false), false, "false");
+	a(t(""), "", "''");
+	a(numIsNaN(t(NaN)), true, "NaN");
+	a(t(x = {}), x, "{}");
+
+	a.throws(function () {
+		t();
+	}, "Undefined");
+	a.throws(function () {
+		t(null);
+	}, "null");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-array-like-object.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-array-like-object.js
new file mode 100644
index 0000000000..b10ec69b58
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-array-like-object.js
@@ -0,0 +1,29 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x;
+	a.throws(function () {
+ t(0);
+}, TypeError, "0");
+	a.throws(function () {
+ t(false);
+}, TypeError, "false");
+	a.throws(function () {
+ t("");
+}, TypeError, "String");
+	a.throws(function () {
+ t({});
+}, TypeError, "Plain Object");
+	a.throws(function () {
+ t(function () {});
+}, TypeError, "Function");
+	a(t(x = new String("raz")), x, "String object"); // Jslint: ignore
+
+	a(t(x = { length: 1 }), x, "Array like");
+	a.throws(function () {
+ t();
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t(null);
+}, TypeError, "null");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-array-like.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-array-like.js
new file mode 100644
index 0000000000..6da6b191ea
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-array-like.js
@@ -0,0 +1,27 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x;
+	a.throws(function () {
+ t(0);
+}, TypeError, "0");
+	a.throws(function () {
+ t(false);
+}, TypeError, "false");
+	a(t(""), "", "''");
+	a.throws(function () {
+ t({});
+}, TypeError, "Plain Object");
+	a.throws(function () {
+ t(function () {});
+}, TypeError, "Function");
+	a(t(x = new String("raz")), x, "String object"); // Jslint: ignore
+
+	a(t(x = { length: 1 }), x, "Array like");
+	a.throws(function () {
+ t();
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t(null);
+}, TypeError, "null");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-stringifiable-value.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-stringifiable-value.js
new file mode 100644
index 0000000000..8283814ab1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-stringifiable-value.js
@@ -0,0 +1,22 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x;
+	a.throws(function () {
+ t();
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t(null);
+}, TypeError, "Null");
+	a(t(0), "0");
+	a(t(false), "false");
+	a(t(""), "");
+	a(t({}), String({}), "Object");
+	a(t(x = function () {}), String(x), "Function");
+	a(t(x = new String("raz")), String(x), "String object"); // Jslint: ignore
+	a(t(x = new Date()), String(x), "Date");
+
+	a.throws(function () {
+ t(Object.create(null));
+}, TypeError, "Null prototype object");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-stringifiable.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-stringifiable.js
new file mode 100644
index 0000000000..e75a4157bf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/object/validate-stringifiable.js
@@ -0,0 +1,18 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var x;
+	a(t(), "undefined", "Undefined");
+	a(t(null), "null", "Null");
+	a(t(0), "0");
+	a(t(false), "false");
+	a(t(""), "");
+	a(t({}), String({}), "Object");
+	a(t(x = function () {}), String(x), "Function");
+	a(t(x = new String("raz")), String(x), "String object"); // Jslint: ignore
+	a(t(x = new Date()), String(x), "Date");
+
+	a.throws(function () {
+ t(Object.create(null));
+}, TypeError, "Null prototype object");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/optional-chaining.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/optional-chaining.js
new file mode 100644
index 0000000000..1f7d405634
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/optional-chaining.js
@@ -0,0 +1,17 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var obj = { foo: { bar: "elo", par: null } };
+	a(t(), undefined);
+	a(t(null), null);
+	a(t(obj), obj);
+	a(t(obj, "foo"), obj.foo);
+	a(t(obj, "foo", "bar"), "elo");
+	a(t(obj, "foo", "bar", "slice"), String.prototype.slice);
+	a(t(obj, "foo", "par"), null);
+	a(t(obj, "foo", "par", "marko"), undefined);
+	a(t(obj, "marko"), undefined);
+	a(t(""), "");
+	a(t("", "foo"), undefined);
+	a(t("", "slice"), String.prototype.slice);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/promise/#/as-callback.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/promise/#/as-callback.js
new file mode 100644
index 0000000000..528d766aa1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/promise/#/as-callback.js
@@ -0,0 +1,32 @@
+"use strict";
+
+module.exports = function (t, a) {
+	if (typeof Promise !== "function") return null;
+	return {
+		Success: function (d) {
+			t.call(
+				new Promise(function (resolve) {
+					resolve("foo");
+				}),
+				function (error, value) {
+					a(error, null);
+					a(value, "foo");
+					d();
+				}
+			);
+		},
+		Failure: function (d) {
+			var error = new Error("Rejection");
+			t.call(
+				new Promise(function (resolve, reject) {
+					reject(error);
+				}),
+				function (passedError, value) {
+					a(passedError, error);
+					a(value, undefined);
+					d();
+				}
+			);
+		}
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/promise/.eslintrc.json b/kbase-extension/static/ext_packages/igv/es5-ext/test/promise/.eslintrc.json
new file mode 100644
index 0000000000..b8acafa720
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/promise/.eslintrc.json
@@ -0,0 +1,3 @@
+{
+  "globals": { "Promise": true, "setTimeout": true }
+}
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/promise/lazy.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/promise/lazy.js
new file mode 100644
index 0000000000..8c7a5bfa0d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/promise/lazy.js
@@ -0,0 +1,52 @@
+"use strict";
+
+module.exports = function (t) {
+	if (typeof Promise !== "function") return null; // Run tests only in ES2015+ env
+
+	return {
+		"Delays execution": function (a, d) {
+			var invoked = false;
+			var promise = t(function (resolve) {
+				invoked = true;
+				setTimeout(function () {
+					resolve(20);
+				}, 10);
+			});
+
+			a(invoked, false);
+
+			setTimeout(function () {
+				a(invoked, false);
+				promise.then(function (value) {
+					a(value, 20);
+					setTimeout(d, 0); // Escape error swallowing
+				});
+				a(invoked, true);
+			}, 15);
+		},
+		"Passes rejection": function (a, d) {
+			var promise = t(function (resolve, reject) {
+				setTimeout(function () {
+					reject(new Error("Stop"));
+				}, 10);
+			});
+
+			promise.catch(function (error) {
+				a(error instanceof Error, true);
+				a(error.message, "Stop");
+				setTimeout(d, 0); // Escape error swallowing
+			});
+		},
+		"Passes sync exception": function (a, d) {
+			var promise = t(function () {
+				throw new Error("Stop");
+			});
+
+			promise.catch(function (error) {
+				a(error instanceof Error, true);
+				a(error.message, "Stop");
+				setTimeout(d, 0); // Escape error swallowing
+			});
+		}
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/index.js
new file mode 100644
index 0000000000..7ab9ab8af5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/index.js
@@ -0,0 +1,15 @@
+/* eslint-env node */
+
+"use strict";
+
+var indexTest = require("tad/lib/utils/index-test")
+  , path      = require("path").resolve(__dirname, "../../../reg-exp/#");
+
+module.exports = function (t, a, d) {
+	indexTest(
+		indexTest.readDir(path).aside(function (data) {
+			delete data.sticky;
+			delete data.unicode;
+		})
+	)(t, a, d);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/is-sticky.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/is-sticky.js
new file mode 100644
index 0000000000..e65740e76d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/is-sticky.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var re;
+	a(t.call(/raz/), false, "Normal");
+	a(t.call(/raz/g), false, "Global");
+	try {
+		// eslint-disable-next-line no-invalid-regexp
+		re = new RegExp("raz", "y");
+	} catch (ignore) {}
+	if (!re) return;
+	a(t.call(re), true, "Sticky");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/is-unicode.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/is-unicode.js
new file mode 100644
index 0000000000..86217aa042
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/is-unicode.js
@@ -0,0 +1,13 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var re;
+	a(t.call(/raz/), false, "Normal");
+	a(t.call(/raz/g), false, "Global");
+	try {
+		// eslint-disable-next-line no-invalid-regexp
+		re = new RegExp("raz", "u");
+	} catch (ignore) {}
+	if (!re) return;
+	a(t.call(re), true, "Unicode");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/implement.js
new file mode 100644
index 0000000000..633d9bb6b0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../reg-exp/#/match/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/shim.js
new file mode 100644
index 0000000000..fce094f61b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/match/shim.js
@@ -0,0 +1,8 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var result = ["foo"];
+	result.index = 0;
+	result.input = "foobar";
+	a.deep(t.call(/foo/, "foobar"), result);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/implement.js
new file mode 100644
index 0000000000..7da5e66948
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../reg-exp/#/replace/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/shim.js
new file mode 100644
index 0000000000..4178065db1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/replace/shim.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call(/foo/, "foobar", "mar"), "marbar");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/implement.js
new file mode 100644
index 0000000000..ded73e27d6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../reg-exp/#/search/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/shim.js
new file mode 100644
index 0000000000..779b132747
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/search/shim.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call(/foo/, "barfoo"), 3);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/implement.js
new file mode 100644
index 0000000000..4ef532bd73
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../reg-exp/#/split/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/shim.js
new file mode 100644
index 0000000000..a01250e9a6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/split/shim.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.deep(t.call(/\|/, "bar|foo"), ["bar", "foo"]);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/sticky/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/sticky/implement.js
new file mode 100644
index 0000000000..d7e59bf99a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/sticky/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../reg-exp/#/sticky/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/sticky/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/sticky/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/sticky/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/unicode/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/unicode/implement.js
new file mode 100644
index 0000000000..9cb2b3792c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/unicode/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../reg-exp/#/unicode/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/unicode/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/unicode/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/#/unicode/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/escape.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/escape.js
new file mode 100644
index 0000000000..9478f52342
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/escape.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var str = "(?:^te|er)s{2}t\\[raz]+$";
+	a(RegExp("^" + t(str) + "$").test(str), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/is-reg-exp.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/is-reg-exp.js
new file mode 100644
index 0000000000..7727eabaf5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/is-reg-exp.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t("arar"), false, "String");
+	a(t(12), false, "Number");
+	a(t(true), false, "Boolean");
+	a(t(new Date()), false, "Date");
+	a(t(new String("raz")), false, "String object");
+	a(t({}), false, "Plain object");
+	a(t(/a/), true, "Regular expression");
+	a(t(new RegExp("a")), true, "Regular expression via constructor");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/valid-reg-exp.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/valid-reg-exp.js
new file mode 100644
index 0000000000..2f99441b02
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/reg-exp/valid-reg-exp.js
@@ -0,0 +1,19 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var r = /raz/;
+	a(t(r), r, "Direct");
+	r = new RegExp("foo");
+	a(t(r), r, "Constructor");
+	a.throws(function () {
+		t({});
+	}, "Object");
+	a.throws(function () {
+		t(function () {});
+	}, "Function");
+	a.throws(function () {
+		t({ exec: function () {
+ return 20;
+} });
+	}, "Plain object");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/safe-to-string.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/safe-to-string.js
new file mode 100644
index 0000000000..b9ffe1a890
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/safe-to-string.js
@@ -0,0 +1,19 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(), "undefined");
+	a(t(null), "null");
+	a(t(10), "10");
+	a(t("str"), "str");
+	a(
+		t({
+			toString: function () {
+				return "miszka";
+			}
+		}),
+		"miszka"
+	);
+	// eslint-disable-next-line symbol-description
+	if (typeof Symbol === "function") a(t(Symbol()), "Symbol()");
+	a(t(Object.create(null)), "[Non-coercible (to string) value]");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/implement.js
new file mode 100644
index 0000000000..c984fb2684
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../string/#/@@iterator/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/shim.js
new file mode 100644
index 0000000000..467cdc355d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/@@iterator/shim.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function (t, a) {
+	var it = t.call("r💩z");
+	a.deep(it.next(), { done: false, value: "r" }, "#1");
+	a.deep(it.next(), { done: false, value: "💩" }, "#2");
+	a.deep(it.next(), { done: false, value: "z" }, "#3");
+	a.deep(it.next(), { done: true, value: undefined }, "End");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/at.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/at.js
new file mode 100644
index 0000000000..a614f938f6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/at.js
@@ -0,0 +1,132 @@
+/* eslint no-useless-call: "off" */
+// See tests at https://github.com/mathiasbynens/String.prototype.at
+
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.length, 1, "Length");
+
+	a.h1("BMP");
+	a(t.call("abc\uD834\uDF06def", -Infinity), "", "-Infinity");
+	a(t.call("abc\uD834\uDF06def", -1), "", "-1");
+	a(t.call("abc\uD834\uDF06def", -0), "a", "-0");
+	a(t.call("abc\uD834\uDF06def", +0), "a", "+0");
+	a(t.call("abc\uD834\uDF06def", 1), "b", "1");
+	a(t.call("abc\uD834\uDF06def", 3), "\uD834\uDF06", "3");
+	a(t.call("abc\uD834\uDF06def", 4), "\uDF06", "4");
+	a(t.call("abc\uD834\uDF06def", 5), "d", "5");
+	a(t.call("abc\uD834\uDF06def", 42), "", "42");
+	a(t.call("abc\uD834\uDF06def", Number(Infinity)), "", "+Infinity");
+	a(t.call("abc\uD834\uDF06def", null), "a", "null");
+	a(t.call("abc\uD834\uDF06def", undefined), "a", "undefined");
+	a(t.call("abc\uD834\uDF06def"), "a", "No argument");
+	a(t.call("abc\uD834\uDF06def", false), "a", "false");
+	a(t.call("abc\uD834\uDF06def", NaN), "a", "NaN");
+	a(t.call("abc\uD834\uDF06def", ""), "a", "Empty string");
+	a(t.call("abc\uD834\uDF06def", "_"), "a", "_");
+	a(t.call("abc\uD834\uDF06def", "1"), "b", "'1'");
+	a(t.call("abc\uD834\uDF06def", []), "a", "[]");
+	a(t.call("abc\uD834\uDF06def", {}), "a", "{}");
+	a(t.call("abc\uD834\uDF06def", -0.9), "a", "-0.9");
+	a(t.call("abc\uD834\uDF06def", 1.9), "b", "1.9");
+	a(t.call("abc\uD834\uDF06def", 7.9), "f", "7.9");
+	a(t.call("abc\uD834\uDF06def", Math.pow(2, 32)), "", "Big number");
+
+	a.h1("Astral symbol");
+	a(t.call("\uD834\uDF06def", -Infinity), "", "-Infinity");
+	a(t.call("\uD834\uDF06def", -1), "", "-1");
+	a(t.call("\uD834\uDF06def", -0), "\uD834\uDF06", "-0");
+	a(t.call("\uD834\uDF06def", +0), "\uD834\uDF06", "+0");
+	a(t.call("\uD834\uDF06def", 1), "\uDF06", "1");
+	a(t.call("\uD834\uDF06def", 2), "d", "2");
+	a(t.call("\uD834\uDF06def", 3), "e", "3");
+	a(t.call("\uD834\uDF06def", 4), "f", "4");
+	a(t.call("\uD834\uDF06def", 42), "", "42");
+	a(t.call("\uD834\uDF06def", Number(Infinity)), "", "+Infinity");
+	a(t.call("\uD834\uDF06def", null), "\uD834\uDF06", "null");
+	a(t.call("\uD834\uDF06def", undefined), "\uD834\uDF06", "undefined");
+	a(t.call("\uD834\uDF06def"), "\uD834\uDF06", "No arguments");
+	a(t.call("\uD834\uDF06def", false), "\uD834\uDF06", "false");
+	a(t.call("\uD834\uDF06def", NaN), "\uD834\uDF06", "NaN");
+	a(t.call("\uD834\uDF06def", ""), "\uD834\uDF06", "Empty string");
+	a(t.call("\uD834\uDF06def", "_"), "\uD834\uDF06", "_");
+	a(t.call("\uD834\uDF06def", "1"), "\uDF06", "'1'");
+
+	a.h1("Lone high surrogates");
+	a(t.call("\uD834abc", -Infinity), "", "-Infinity");
+	a(t.call("\uD834abc", -1), "", "-1");
+	a(t.call("\uD834abc", -0), "\uD834", "-0");
+	a(t.call("\uD834abc", +0), "\uD834", "+0");
+	a(t.call("\uD834abc", 1), "a", "1");
+	a(t.call("\uD834abc", 42), "", "42");
+	a(t.call("\uD834abc", Number(Infinity)), "", "Infinity");
+	a(t.call("\uD834abc", null), "\uD834", "null");
+	a(t.call("\uD834abc", undefined), "\uD834", "undefined");
+	a(t.call("\uD834abc"), "\uD834", "No arguments");
+	a(t.call("\uD834abc", false), "\uD834", "false");
+	a(t.call("\uD834abc", NaN), "\uD834", "NaN");
+	a(t.call("\uD834abc", ""), "\uD834", "Empty string");
+	a(t.call("\uD834abc", "_"), "\uD834", "_");
+	a(t.call("\uD834abc", "1"), "a", "'a'");
+
+	a.h1("Lone low surrogates");
+	a(t.call("\uDF06abc", -Infinity), "", "-Infinity");
+	a(t.call("\uDF06abc", -1), "", "-1");
+	a(t.call("\uDF06abc", -0), "\uDF06", "-0");
+	a(t.call("\uDF06abc", +0), "\uDF06", "+0");
+	a(t.call("\uDF06abc", 1), "a", "1");
+	a(t.call("\uDF06abc", 42), "", "42");
+	a(t.call("\uDF06abc", Number(Infinity)), "", "+Infinity");
+	a(t.call("\uDF06abc", null), "\uDF06", "null");
+	a(t.call("\uDF06abc", undefined), "\uDF06", "undefined");
+	a(t.call("\uDF06abc"), "\uDF06", "No arguments");
+	a(t.call("\uDF06abc", false), "\uDF06", "false");
+	a(t.call("\uDF06abc", NaN), "\uDF06", "NaN");
+	a(t.call("\uDF06abc", ""), "\uDF06", "Empty string");
+	a(t.call("\uDF06abc", "_"), "\uDF06", "_");
+	a(t.call("\uDF06abc", "1"), "a", "'1'");
+
+	a.h1("Context");
+	a.throws(
+		function () {
+			t.call(undefined);
+		},
+		TypeError,
+		"Undefined"
+	);
+	a.throws(
+		function () {
+			t.call(undefined, 4);
+		},
+		TypeError,
+		"Undefined + argument"
+	);
+	a.throws(
+		function () {
+			t.call(null);
+		},
+		TypeError,
+		"Null"
+	);
+	a.throws(
+		function () {
+			t.call(null, 4);
+		},
+		TypeError,
+		"Null + argument"
+	);
+	a(t.call(42, 0), "4", "Number #1");
+	a(t.call(42, 1), "2", "Number #2");
+	a(
+		t.call(
+			{
+				toString: function () {
+					return "abc";
+				}
+			},
+			2
+		),
+		"c",
+		"Object"
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/camel-to-hyphen.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/camel-to-hyphen.js
new file mode 100644
index 0000000000..bbf9ae48a9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/camel-to-hyphen.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("razDwaTRzy4yFoo45My"), "raz-dwa-t-rzy4y-foo45-my");
+	a(t.call("razDwaTRzy4yFoo45My-"), "raz-dwa-t-rzy4y-foo45-my-");
+	a(t.call("razDwaTRzy4yFoo45My--"), "raz-dwa-t-rzy4y-foo45-my--");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/capitalize.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/capitalize.js
new file mode 100644
index 0000000000..884ae9cbb8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/capitalize.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("raz"), "Raz", "Word");
+	a(t.call("BLA"), "BLA", "Uppercase");
+	a(t.call(""), "", "Empty");
+	a(t.call("a"), "A", "One letter");
+	a(t.call("this is a test"), "This is a test", "Sentence");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/case-insensitive-compare.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/case-insensitive-compare.js
new file mode 100644
index 0000000000..8117f92058
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/case-insensitive-compare.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("AA", "aa"), 0, "Same");
+	a.ok(t.call("Amber", "zebra") < 0, "Less");
+	a.ok(t.call("Zebra", "amber") > 0, "Greater");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/implement.js
new file mode 100644
index 0000000000..f966c53543
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/implement.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isImplemented =
+	require("../../../../string/#/code-point-at/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/shim.js
new file mode 100644
index 0000000000..40d62766e7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/code-point-at/shim.js
@@ -0,0 +1,119 @@
+/* eslint no-useless-call: "off" */
+
+// Taken from: https://github.com/mathiasbynens/String.prototype.codePointAt
+//             /blob/master/tests/tests.js
+
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.length, 1, "Length");
+
+	// String that starts with a BMP symbol
+	a(t.call("abc\uD834\uDF06def", ""), 0x61);
+	a(t.call("abc\uD834\uDF06def", "_"), 0x61);
+	a(t.call("abc\uD834\uDF06def"), 0x61);
+	a(t.call("abc\uD834\uDF06def", -Infinity), undefined);
+	a(t.call("abc\uD834\uDF06def", -1), undefined);
+	a(t.call("abc\uD834\uDF06def", -0), 0x61);
+	a(t.call("abc\uD834\uDF06def", 0), 0x61);
+	a(t.call("abc\uD834\uDF06def", 3), 0x1d306);
+	a(t.call("abc\uD834\uDF06def", 4), 0xdf06);
+	a(t.call("abc\uD834\uDF06def", 5), 0x64);
+	a(t.call("abc\uD834\uDF06def", 42), undefined);
+	a(t.call("abc\uD834\uDF06def", Infinity), undefined);
+	a(t.call("abc\uD834\uDF06def", Infinity), undefined);
+	a(t.call("abc\uD834\uDF06def", NaN), 0x61);
+	a(t.call("abc\uD834\uDF06def", false), 0x61);
+	a(t.call("abc\uD834\uDF06def", null), 0x61);
+	a(t.call("abc\uD834\uDF06def", undefined), 0x61);
+
+	// String that starts with an astral symbol
+	a(t.call("\uD834\uDF06def", ""), 0x1d306);
+	a(t.call("\uD834\uDF06def", "1"), 0xdf06);
+	a(t.call("\uD834\uDF06def", "_"), 0x1d306);
+	a(t.call("\uD834\uDF06def"), 0x1d306);
+	a(t.call("\uD834\uDF06def", -1), undefined);
+	a(t.call("\uD834\uDF06def", -0), 0x1d306);
+	a(t.call("\uD834\uDF06def", 0), 0x1d306);
+	a(t.call("\uD834\uDF06def", 1), 0xdf06);
+	a(t.call("\uD834\uDF06def", 42), undefined);
+	a(t.call("\uD834\uDF06def", false), 0x1d306);
+	a(t.call("\uD834\uDF06def", null), 0x1d306);
+	a(t.call("\uD834\uDF06def", undefined), 0x1d306);
+
+	// Lone high surrogates
+	a(t.call("\uD834abc", ""), 0xd834);
+	a(t.call("\uD834abc", "_"), 0xd834);
+	a(t.call("\uD834abc"), 0xd834);
+	a(t.call("\uD834abc", -1), undefined);
+	a(t.call("\uD834abc", -0), 0xd834);
+	a(t.call("\uD834abc", 0), 0xd834);
+	a(t.call("\uD834abc", false), 0xd834);
+	a(t.call("\uD834abc", NaN), 0xd834);
+	a(t.call("\uD834abc", null), 0xd834);
+	a(t.call("\uD834abc", undefined), 0xd834);
+
+	// Lone low surrogates
+	a(t.call("\uDF06abc", ""), 0xdf06);
+	a(t.call("\uDF06abc", "_"), 0xdf06);
+	a(t.call("\uDF06abc"), 0xdf06);
+	a(t.call("\uDF06abc", -1), undefined);
+	a(t.call("\uDF06abc", -0), 0xdf06);
+	a(t.call("\uDF06abc", 0), 0xdf06);
+	a(t.call("\uDF06abc", false), 0xdf06);
+	a(t.call("\uDF06abc", NaN), 0xdf06);
+	a(t.call("\uDF06abc", null), 0xdf06);
+	a(t.call("\uDF06abc", undefined), 0xdf06);
+
+	a.throws(function () {
+		t.call(undefined);
+	}, TypeError);
+	a.throws(function () {
+		t.call(undefined, 4);
+	}, TypeError);
+	a.throws(function () {
+		t.call(null);
+	}, TypeError);
+	a.throws(function () {
+		t.call(null, 4);
+	}, TypeError);
+	a(t.call(42, 0), 0x34);
+	a(t.call(42, 1), 0x32);
+	a(
+		t.call(
+			{
+				toString: function () {
+					return "abc";
+				}
+			},
+			2
+		),
+		0x63
+	);
+
+	a.throws(function () {
+		t.apply(undefined);
+	}, TypeError);
+	a.throws(function () {
+		t.apply(undefined, [4]);
+	}, TypeError);
+	a.throws(function () {
+		t.apply(null);
+	}, TypeError);
+	a.throws(function () {
+		t.apply(null, [4]);
+	}, TypeError);
+	a(t.apply(42, [0]), 0x34);
+	a(t.apply(42, [1]), 0x32);
+	a(
+		t.apply(
+			{
+				toString: function () {
+					return "abc";
+				}
+			},
+			[2]
+		),
+		0x63
+	);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/implement.js
new file mode 100644
index 0000000000..297a832f9c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../string/#/contains/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/shim.js
new file mode 100644
index 0000000000..0a73671d45
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/contains/shim.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("raz", ""), true, "Empty");
+	a(t.call("", ""), true, "Both Empty");
+	a(t.call("raz", "raz"), true, "Same");
+	a(t.call("razdwa", "raz"), true, "Starts with");
+	a(t.call("razdwa", "dwa"), true, "Ends with");
+	a(t.call("razdwa", "zdw"), true, "In middle");
+	a(t.call("", "raz"), false, "Something in empty");
+	a(t.call("az", "raz"), false, "Longer");
+	a(t.call("azasdfasdf", "azff"), false, "Not found");
+	a(t.call("razdwa", "raz", 1), false, "Position");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/count.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/count.js
new file mode 100644
index 0000000000..d259c9012d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/count.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a.throws(function () {
+		t.call("", "");
+	});
+	a(t.call("x", "x"), 1);
+	a(t.call("xx", "x"), 2);
+	a(t.call("xxx", "xx"), 1);
+	a(t.call("xxxx", "xx"), 2);
+	a(t.call("xx", "xxx"), 0);
+	a(t.call("", "elo"), 0);
+	a(t.call("fooo", "foofooo"), 0);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/implement.js
new file mode 100644
index 0000000000..5a2ca3cc66
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../string/#/ends-with/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/shim.js
new file mode 100644
index 0000000000..7539883315
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/ends-with/shim.js
@@ -0,0 +1,16 @@
+// In some parts copied from:
+// http://closure-library.googlecode.com/svn/trunk/closure/goog/
+// string/string_test.html
+
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("abc", ""), true, "Empty needle");
+	a(t.call("abcd", "cd"), true, "Ends with needle");
+	a(t.call("abcd", "abcd"), true, "Needle equals haystack");
+	a(t.call("abcd", "ab"), false, "Doesn't end with needle");
+	a(t.call("abc", "defg"), false, "Length trick");
+	a(t.call("razdwa", "zd", 3), false, "Position: false");
+	a(t.call("razdwa", "zd", 4), true, "Position: true");
+	a(t.call("razdwa", "zd", 5), false, "Position: false #2");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/hyphen-to-camel.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/hyphen-to-camel.js
new file mode 100644
index 0000000000..89c8161c9e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/hyphen-to-camel.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("raz-dwa-t-rzy-4y-rtr4-tiu-45-pa"), "razDwaTRzy4yRtr4Tiu45Pa");
+	a(t.call("raz-dwa-t-rzy-4y-rtr4-tiu-45-pa-"), "razDwaTRzy4yRtr4Tiu45Pa-");
+	a(t.call("raz-dwa-t-rzy-4y-rtr4-tiu-45-pa--"), "razDwaTRzy4yRtr4Tiu45Pa--");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/indent.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/indent.js
new file mode 100644
index 0000000000..6b1dd895d2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/indent.js
@@ -0,0 +1,9 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("ra\nzz", ""), "ra\nzz", "Empty");
+	a(t.call("ra\nzz", "\t", 3), "\t\t\tra\n\t\t\tzz", "String repeat");
+	a(t.call("ra\nzz\nsss\nfff\n", "\t"), "\tra\n\tzz\n\tsss\n\tfff\n",
+		"Multi-line");
+	a(t.call("ra\n\nzz\n", "\t"), "\tra\n\n\tzz\n", "Don't touch empty lines");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/last.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/last.js
new file mode 100644
index 0000000000..fea798d6a7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/last.js
@@ -0,0 +1,6 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call(""), null, "Null");
+	a(t.call("abcdef"), "f", "String");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/_data.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/_data.js
new file mode 100644
index 0000000000..9631211944
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/_data.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t[0], "object");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/implement.js
new file mode 100644
index 0000000000..b053aa892a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../string/#/normalize/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/shim.js
new file mode 100644
index 0000000000..0c80aa4098
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/normalize/shim.js
@@ -0,0 +1,13 @@
+// Taken from: https://github.com/walling/unorm/blob/master/test/es6-shim.js
+
+"use strict";
+
+var str = "äiti";
+
+module.exports = function (t, a) {
+	a(t.call(str), "\u00e4iti");
+	a(t.call(str, "NFC"), "\u00e4iti");
+	a(t.call(str, "NFD"), "a\u0308iti");
+	a(t.call(str, "NFKC"), "\u00e4iti");
+	a(t.call(str, "NFKD"), "a\u0308iti");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/pad.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/pad.js
new file mode 100644
index 0000000000..e573453fb0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/pad.js
@@ -0,0 +1,24 @@
+"use strict";
+
+var partial = require("../../../function/#/partial");
+
+module.exports = {
+	Left: function (t, a) {
+		t = partial.call(t, "x", 5);
+
+		a(t.call("yy"), "xxxyy");
+		a(t.call(""), "xxxxx", "Empty string");
+
+		a(t.call("yyyyy"), "yyyyy", "Equal length");
+		a(t.call("yyyyyyy"), "yyyyyyy", "Longer");
+	},
+	Right: function (t, a) {
+		t = partial.call(t, "x", -5);
+
+		a(t.call("yy"), "yyxxx");
+		a(t.call(""), "xxxxx", "Empty string");
+
+		a(t.call("yyyyy"), "yyyyy", "Equal length");
+		a(t.call("yyyyyyy"), "yyyyyyy", "Longer");
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/plain-replace-all.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/plain-replace-all.js
new file mode 100644
index 0000000000..e5f801c62f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/plain-replace-all.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("razdwatrzy", "dwa", "olera"), "razoleratrzy", "Basic");
+	a(t.call("razdwatrzy", "dwa", "ole$&a"), "razole$&atrzy", "Inserts");
+	a(t.call("razdwa", "ola", "sdfs"), "razdwa", "No replace");
+
+	a(t.call("$raz$$dwa$trzy$", "$", "&&"), "&&raz&&&&dwa&&trzy&&", "Multi");
+	a(t.call("$raz$$dwa$$$$trzy$", "$$", "&"), "$raz&dwa&&trzy$",
+		"Multi many chars");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/plain-replace.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/plain-replace.js
new file mode 100644
index 0000000000..9f6c2beefd
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/plain-replace.js
@@ -0,0 +1,7 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("razdwatrzy", "dwa", "olera"), "razoleratrzy", "Basic");
+	a(t.call("razdwatrzy", "dwa", "ole$&a"), "razole$&atrzy", "Inserts");
+	a(t.call("razdwa", "ola", "sdfs"), "razdwa", "No replace");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/implement.js
new file mode 100644
index 0000000000..2709628959
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../string/#/repeat/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/shim.js
new file mode 100644
index 0000000000..c5848840c8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/repeat/shim.js
@@ -0,0 +1,12 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("a", 0), "", "Empty");
+	a(t.call("a", 1), "a", "1");
+	a(t.call("a", 2), "aa", "2");
+	a(t.call("\t", 5), "\t\t\t\t\t", "Whitespace");
+	a(t.call("raz", 3), "razrazraz", "Many chars");
+	a(t.call("raz", 3), "razrazraz", "Many chars");
+	a(t.call("razfoobar", 5), "razfoobarrazfoobarrazfoobarrazfoobarrazfoobar", "Many chars");
+	a(t.call("a", 300).length, 300);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/implement.js
new file mode 100644
index 0000000000..d1f1ce2529
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../../string/#/starts-with/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/shim.js
new file mode 100644
index 0000000000..4b5e4e402a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/starts-with/shim.js
@@ -0,0 +1,14 @@
+// Inspired and in some parts copied from:
+// http://closure-library.googlecode.com/svn/trunk/closure/goog
+// /string/string_test.html
+
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("abc", ""), true, "Empty needle");
+	a(t.call("abcd", "ab"), true, "Starts with needle");
+	a(t.call("abcd", "abcd"), true, "Needle equals haystack");
+	a(t.call("abcd", "bcde", 1), false, "Needle larger than haystack");
+	a(!t.call("abcd", "cd"), true, "Doesn't start with needle");
+	a(t.call("abcd", "bc", 1), true, "Position");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/uncapitalize.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/uncapitalize.js
new file mode 100644
index 0000000000..cddd847ce9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/#/uncapitalize.js
@@ -0,0 +1,10 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t.call("raz"), "raz", "Word");
+	a(t.call("BLA"), "bLA", "Uppercase");
+	a(t.call(""), "", "Empty");
+	a(t.call("a"), "a", "One letter");
+	a(t.call("this is a test"), "this is a test", "Sentence");
+	a(t.call("This is a test"), "this is a test", "Capitalized sentence");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/format-method.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/format-method.js
new file mode 100644
index 0000000000..d0c216b461
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/format-method.js
@@ -0,0 +1,14 @@
+"use strict";
+
+module.exports = function (t, a) {
+	t = t({
+		a: "A",
+		aa: "B",
+		ab: "C",
+		b: "D",
+		c: function () {
+			return ++this.a;
+		}
+	});
+	a(t.call({ a: 0 }, " %a%aab%abb%b\\%aa%ab%c%c "), " ABbCbD%aaC12 ");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/implement.js
new file mode 100644
index 0000000000..31ed7b5bde
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../string/from-code-point/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/shim.js
new file mode 100644
index 0000000000..023931f131
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/from-code-point/shim.js
@@ -0,0 +1,73 @@
+// Taken from: https://github.com/mathiasbynens/String.fromCodePoint/blob/master
+//             /tests/tests.js
+
+"use strict";
+
+var pow = Math.pow;
+
+module.exports = function (t, a) {
+	var counter, result;
+
+	a(t.length, 1, "Length");
+	a(String.propertyIsEnumerable("fromCodePoint"), false, "Not enumerable");
+
+	a(t(""), "\0", "Empty string");
+	a(t(), "", "No arguments");
+	a(t(-0), "\0", "-0");
+	a(t(0), "\0", "0");
+	a(t(0x1D306), "\uD834\uDF06", "Unicode");
+	a(t(0x1D306, 0x61, 0x1D307), "\uD834\uDF06a\uD834\uDF07", "Complex unicode");
+	a(t(0x61, 0x62, 0x1D307), "ab\uD834\uDF07", "Complex");
+	a(t(false), "\0", "false");
+	a(t(null), "\0", "null");
+
+	a.throws(function () {
+ t("_");
+}, RangeError, "_");
+	a.throws(function () {
+ t(Infinity);
+}, RangeError, "Infinity");
+	a.throws(function () {
+ t(-Infinity);
+}, RangeError, "-Infinity");
+	a.throws(function () {
+ t(-1);
+}, RangeError, "-1");
+	a.throws(function () {
+ t(0x10FFFF + 1);
+}, RangeError, "Range error #1");
+	a.throws(function () {
+ t(3.14);
+}, RangeError, "Range error #2");
+	a.throws(function () {
+ t(3e-2);
+}, RangeError, "Range error #3");
+	a.throws(function () {
+ t(-Infinity);
+}, RangeError, "Range error #4");
+	a.throws(function () {
+ t(Number(Infinity));
+}, RangeError, "Range error #5");
+	a.throws(function () {
+ t(NaN);
+}, RangeError, "Range error #6");
+	a.throws(function () {
+ t(undefined);
+}, RangeError, "Range error #7");
+	a.throws(function () {
+ t({});
+}, RangeError, "Range error #8");
+	a.throws(function () {
+ t(/re/);
+}, RangeError, "Range error #9");
+
+	counter = pow(2, 15) * 3 / 2;
+	result = [];
+	while (--counter >= 0) result.push(0); // One code unit per symbol
+	t.apply(null, result); // Must not throw
+
+	counter = pow(2, 15) * 3 / 2;
+	result = [];
+	while (--counter >= 0) result.push(0xFFFF + 1); // Two code units per symbol
+	t.apply(null, result); // Must not throw
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/is-string.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/is-string.js
new file mode 100644
index 0000000000..0e831221d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/is-string.js
@@ -0,0 +1,11 @@
+"use strict";
+
+module.exports = function (t, a) {
+	a(t(null), false, "Null");
+	a(t(""), true, "Empty string");
+	a(t(12), false, "Number");
+	a(t(false), false, "Boolean");
+	a(t(new Date()), false, "Date");
+	a(t(new String("raz")), true, "String object");
+	a(t("asdfaf"), true, "String");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/random-uniq.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/random-uniq.js
new file mode 100644
index 0000000000..3b6d889ad3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/random-uniq.js
@@ -0,0 +1,14 @@
+"use strict";
+
+var isValidFormat = RegExp.prototype.test.bind(/^[a-z0-9]+$/);
+
+module.exports = function (t, a) {
+	a(typeof t(), "string");
+	a.ok(t().length > 7);
+	a.not(t(), t());
+	a.ok(isValidFormat(t()));
+	a.ok(isValidFormat(t()));
+	a.ok(isValidFormat(t()));
+	a.ok(isValidFormat(t()));
+	a.ok(isValidFormat(t()));
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/random.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/random.js
new file mode 100644
index 0000000000..3fa44ca5ba
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/random.js
@@ -0,0 +1,13 @@
+"use strict";
+
+var isValidFormat = RegExp.prototype.test.bind(/^[a-z0-9]+$/);
+
+module.exports = function (t, a) {
+	a(typeof t(), "string");
+	a.ok(t().length > 7);
+	a.not(t({ isUnique: true }), t({ isUnique: true }));
+	a.ok(isValidFormat(t()));
+	a(t({ length: 1 }).length, 1);
+	a(t({ length: 100 }).length, 100);
+	a(t({ length: 0 }), "");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/implement.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/implement.js
new file mode 100644
index 0000000000..25b624e8e9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/implement.js
@@ -0,0 +1,7 @@
+"use strict";
+
+var isImplemented = require("../../../string/raw/is-implemented");
+
+module.exports = function (a) {
+ a(isImplemented(), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/index.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/index.js
new file mode 100644
index 0000000000..10bb8f65d7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/index.js
@@ -0,0 +1,3 @@
+"use strict";
+
+module.exports = require("./shim");
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/is-implemented.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/is-implemented.js
new file mode 100644
index 0000000000..5003e7e937
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/is-implemented.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = function (t, a) {
+ a(typeof t(), "boolean");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/shim.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/shim.js
new file mode 100644
index 0000000000..17a11ac52f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/string/raw/shim.js
@@ -0,0 +1,15 @@
+// Partially taken from:
+// https://github.com/paulmillr/es6-shim/blob/master/test/string.js
+
+"use strict";
+
+module.exports = function (t, a) {
+	var callSite = [];
+
+	callSite.raw = ["The total is ", " ($", " with tax)"];
+	a(t(callSite, "{total}", "{total * 1.01}"),
+		"The total is {total} (${total * 1.01} with tax)");
+
+	callSite.raw = [];
+	a(t(callSite, "{total}", "{total * 1.01}"), "");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/test/to-short-string-representation.js b/kbase-extension/static/ext_packages/igv/es5-ext/test/to-short-string-representation.js
new file mode 100644
index 0000000000..d76dc7d088
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/test/to-short-string-representation.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var repeat = require("../string/#/repeat");
+
+module.exports = function (t, a) {
+	a(t(), "undefined");
+	a(t(null), "null");
+	a(t(10), "10");
+	a(t("str"), "str");
+	a(
+		t({
+			toString: function () {
+				return "miszka";
+			}
+		}),
+		"miszka"
+	);
+	// eslint-disable-next-line symbol-description
+	if (typeof Symbol === "function") a(t(Symbol()), "Symbol()");
+	a(t(Object.create(null)), "[Non-coercible (to string) value]");
+	a(t(repeat.call("a", 300)), repeat.call("a", 99) + "…");
+	a(t("mar\ntoo\nfar"), "mar\\ntoo\\nfar");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es5-ext/to-short-string-representation.js b/kbase-extension/static/ext_packages/igv/es5-ext/to-short-string-representation.js
new file mode 100644
index 0000000000..5aede5380c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es5-ext/to-short-string-representation.js
@@ -0,0 +1,16 @@
+"use strict";
+
+var safeToString = require("./safe-to-string");
+
+var reNewLine = /[\n\r\u2028\u2029]/g;
+
+module.exports = function (value) {
+	var string = safeToString(value);
+	// Trim if too long
+	if (string.length > 100) string = string.slice(0, 99) + "…";
+	// Replace eventual new lines
+	string = string.replace(reNewLine, function (char) {
+		return JSON.stringify(char).slice(1, -1);
+	});
+	return string;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/#/chain.js b/kbase-extension/static/ext_packages/igv/es6-iterator/#/chain.js
new file mode 100644
index 0000000000..190a3464eb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/#/chain.js
@@ -0,0 +1,40 @@
+"use strict";
+
+var setPrototypeOf = require("es5-ext/object/set-prototype-of")
+  , d              = require("d")
+  , Iterator       = require("../")
+  , validIterable  = require("../valid-iterable")
+
+  , push = Array.prototype.push
+  , defineProperties = Object.defineProperties
+  , IteratorChain;
+
+IteratorChain = function (iterators) {
+	defineProperties(this, {
+		__iterators__: d("", iterators),
+		__current__: d("w", iterators.shift())
+	});
+};
+if (setPrototypeOf) setPrototypeOf(IteratorChain, Iterator);
+
+IteratorChain.prototype = Object.create(Iterator.prototype, {
+	constructor: d(IteratorChain),
+	next: d(function () {
+		var result;
+		if (!this.__current__) return { done: true, value: undefined };
+		result = this.__current__.next();
+		while (result.done) {
+			this.__current__ = this.__iterators__.shift();
+			if (!this.__current__) return { done: true, value: undefined };
+			result = this.__current__.next();
+		}
+		return result;
+	})
+});
+
+module.exports = function () {
+	var iterators = [this];
+	push.apply(iterators, arguments);
+	iterators.forEach(validIterable);
+	return new IteratorChain(iterators);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/.editorconfig b/kbase-extension/static/ext_packages/igv/es6-iterator/.editorconfig
new file mode 100644
index 0000000000..c24a6cd1f4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/.editorconfig
@@ -0,0 +1,14 @@
+# EditorConfig is awesome: http://EditorConfig.org
+
+# top-most EditorConfig file
+root = true
+
+# Unix-style newlines with a newline ending every file
+[*]
+end_of_line = lf
+insert_final_newline = true
+indent_style = tab
+
+[{*.json,*.yml}]
+indent_style = space
+indent_size = 2
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/.npmignore b/kbase-extension/static/ext_packages/igv/es6-iterator/.npmignore
new file mode 100644
index 0000000000..a91db6550d
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/.npmignore
@@ -0,0 +1,12 @@
+.DS_Store
+Thumbs.db
+/.idea
+/.vscode
+npm-debug.log
+/wallaby.js
+/node_modules
+/.travis.yml
+/.gitignore
+/.circle.yml
+/.circleci
+/.appveyor.yml
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/CHANGELOG.md b/kbase-extension/static/ext_packages/igv/es6-iterator/CHANGELOG.md
new file mode 100644
index 0000000000..37eb16abe3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/CHANGELOG.md
@@ -0,0 +1,27 @@
+# Change Log
+
+All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines.
+
+<a name="2.0.3"></a>
+## [2.0.3](https://github.com/medikoo/es6-iterator/compare/v2.0.2...v2.0.3) (2017-10-17)
+
+
+### Bug Fixes
+
+* configurability of toStringTag ([b99f692](https://github.com/medikoo/es6-iterator/commit/b99f692))
+
+
+
+<a name="2.0.2"></a>
+## [2.0.2](https://github.com/medikoo/es6-iterator/compare/v2.0.1...v2.0.2) (2017-10-17)
+
+
+### Bug Fixes
+
+* constructor exposure ([dbc0c51](https://github.com/medikoo/es6-iterator/commit/dbc0c51))
+* do not allow non constructor calls ([1f2f800](https://github.com/medikoo/es6-iterator/commit/1f2f800))
+* toString and toStringTag symbol definitions. ([2d17786](https://github.com/medikoo/es6-iterator/commit/2d17786)), closes [#6](https://github.com/medikoo/es6-iterator/issues/6)
+
+## Changelog for previous versions
+
+See `CHANGES` file
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/CHANGES b/kbase-extension/static/ext_packages/igv/es6-iterator/CHANGES
new file mode 100644
index 0000000000..83095f7ce8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/CHANGES
@@ -0,0 +1,42 @@
+For recent changelog see CHANGELOG.md
+
+-----
+
+v2.0.1  --  2017.03.15
+* Update dependencies
+
+v2.0.0  --  2015.10.02
+* Use es6-symbol at v3
+
+v1.0.0  --  2015.06.23
+* Implement support for arguments object
+* Drop support for v0.8 node ('^' in package.json dependencies)
+
+v0.1.3  --  2015.02.02
+* Update dependencies
+* Fix spelling of LICENSE
+
+v0.1.2  --  2014.11.19
+* Optimise internal `_next` to not verify internal's list length at all times
+  (#2 thanks @RReverser)
+* Fix documentation examples
+* Configure lint scripts
+
+v0.1.1  --  2014.04.29
+* Fix es6-symbol dependency version
+
+v0.1.0  --  2014.04.29
+* Assure strictly npm hosted dependencies
+* Remove sparse arrays dedicated handling (as per spec)
+* Add: isIterable, validIterable and chain (method)
+* Remove toArray, it's addressed by Array.from (polyfil can be found in es5-ext/array/from)
+* Add break possiblity to 'forOf' via 'doBreak' function argument
+* Provide dedicated iterator for array-likes (ArrayIterator) and for strings (StringIterator)
+* Provide @@toStringTag symbol
+* When available rely on @@iterator symbol
+* Remove 32bit integer maximum list length restriction
+* Improve Iterator internals
+* Update to use latest version of dependencies
+
+v0.0.0  --  2013.10.12
+Initial (dev version)
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/LICENSE b/kbase-extension/static/ext_packages/igv/es6-iterator/LICENSE
new file mode 100644
index 0000000000..d7c36d5585
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/LICENSE
@@ -0,0 +1,21 @@
+The MIT License (MIT)
+
+Copyright (C) 2013-2017 Mariusz Nowak (www.medikoo.com)
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/README.md b/kbase-extension/static/ext_packages/igv/es6-iterator/README.md
new file mode 100644
index 0000000000..288373da7a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/README.md
@@ -0,0 +1,148 @@
+# es6-iterator
+## ECMAScript 6 Iterator interface
+
+### Installation
+
+	$ npm install es6-iterator
+	
+To port it to Browser or any other (non CJS) environment, use your favorite CJS bundler. No favorite yet? Try: [Browserify](http://browserify.org/), [Webmake](https://github.com/medikoo/modules-webmake) or [Webpack](http://webpack.github.io/)
+
+## API
+
+### Constructors
+
+#### Iterator(list) _(es6-iterator)_
+
+Abstract Iterator interface. Meant for extensions and not to be used on its own.
+
+Accepts any _list_ object (technically object with numeric _length_ property).
+
+_Mind it doesn't iterate strings properly, for that use dedicated [StringIterator](#string-iterator)_
+
+```javascript
+var Iterator = require('es6-iterator')
+var iterator = new Iterator([1, 2, 3]);
+
+iterator.next(); // { value: 1, done: false }
+iterator.next(); // { value: 2, done: false }
+iterator.next(); // { value: 3, done: false }
+iterator.next(); // { value: undefined, done: true }
+```
+
+
+#### ArrayIterator(arrayLike[, kind]) _(es6-iterator/array)_
+
+Dedicated for arrays and array-likes. Supports three iteration kinds:
+* __value__ _(default)_ - Iterates values
+* __key__ - Iterates indexes
+* __key+value__ - Iterates keys and indexes, each iteration value is in _[key, value]_ form.
+
+
+```javascript
+var ArrayIterator = require('es6-iterator/array')
+var iterator = new ArrayIterator([1, 2, 3], 'key+value');
+
+iterator.next(); // { value: [0, 1], done: false }
+iterator.next(); // { value: [1, 2], done: false }
+iterator.next(); // { value: [2, 3], done: false }
+iterator.next(); // { value: undefined, done: true }
+```
+
+May also be used for _arguments_ objects:
+
+```javascript
+(function () {
+  var iterator = new ArrayIterator(arguments);
+
+  iterator.next(); // { value: 1, done: false }
+  iterator.next(); // { value: 2, done: false }
+  iterator.next(); // { value: 3, done: false }
+  iterator.next(); // { value: undefined, done: true }
+}(1, 2, 3));
+```
+
+#### StringIterator(str) _(es6-iterator/string)_
+
+Assures proper iteration over unicode symbols.  
+See: http://mathiasbynens.be/notes/javascript-unicode
+
+```javascript
+var StringIterator = require('es6-iterator/string');
+var iterator = new StringIterator('f🙈o🙉o🙊');
+
+iterator.next(); // { value: 'f', done: false }
+iterator.next(); // { value: '🙈', done: false }
+iterator.next(); // { value: 'o', done: false }
+iterator.next(); // { value: '🙉', done: false }
+iterator.next(); // { value: 'o', done: false }
+iterator.next(); // { value: '🙊', done: false }
+iterator.next(); // { value: undefined, done: true }
+```
+
+### Function utilities
+
+#### forOf(iterable, callback[, thisArg]) _(es6-iterator/for-of)_
+
+Polyfill for ECMAScript 6 [`for...of`](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Statements/for...of) statement.
+
+```
+var forOf = require('es6-iterator/for-of');
+var result = [];
+
+forOf('🙈🙉🙊', function (monkey) { result.push(monkey); });
+console.log(result); // ['🙈', '🙉', '🙊'];
+```
+
+Optionally you can break iteration at any point:
+
+```javascript
+var result = [];
+
+forOf([1,2,3,4]', function (val, doBreak) {
+  result.push(monkey);
+  if (val >= 3) doBreak();
+});
+console.log(result); // [1, 2, 3];
+```
+
+#### get(obj) _(es6-iterator/get)_
+
+Return iterator for any iterable object.
+
+```javascript
+var getIterator = require('es6-iterator/get');
+var iterator = get([1,2,3]);
+
+iterator.next(); // { value: 1, done: false }
+iterator.next(); // { value: 2, done: false }
+iterator.next(); // { value: 3, done: false }
+iterator.next(); // { value: undefined, done: true }
+```
+
+#### isIterable(obj) _(es6-iterator/is-iterable)_
+
+Whether _obj_ is iterable
+
+```javascript
+var isIterable = require('es6-iterator/is-iterable');
+
+isIterable(null); // false
+isIterable(true); // false
+isIterable('str'); // true
+isIterable(['a', 'r', 'r']); // true
+isIterable(new ArrayIterator([])); // true
+```
+
+#### validIterable(obj) _(es6-iterator/valid-iterable)_
+
+If _obj_ is an iterable it is returned. Otherwise _TypeError_ is thrown.
+
+### Method extensions
+
+#### iterator.chain(iterator1[, …iteratorn]) _(es6-iterator/#/chain)_
+
+Chain multiple iterators into one.
+
+### Tests [![Build Status](https://travis-ci.org/medikoo/es6-iterator.png)](https://travis-ci.org/medikoo/es6-iterator)
+
+	$ npm test
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/appveyor.yml b/kbase-extension/static/ext_packages/igv/es6-iterator/appveyor.yml
new file mode 100644
index 0000000000..942ab82787
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/appveyor.yml
@@ -0,0 +1,26 @@
+# Test against the latest version of this Node.js version
+environment:
+  matrix:
+    # node.js
+    - nodejs_version: "0.12"
+    - nodejs_version: "4"
+    - nodejs_version: "6"
+    - nodejs_version: "8"
+
+# Install scripts. (runs after repo cloning)
+install:
+  # Get the latest stable version of Node.js or io.js
+  - ps: Install-Product node $env:nodejs_version
+  # install modules
+  - npm install
+
+# Post-install test scripts.
+test_script:
+  # Output useful info for debugging.
+  - node --version
+  - npm --version
+  # run tests
+  - npm test
+
+# Don't actually build.
+build: off
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/array.js b/kbase-extension/static/ext_packages/igv/es6-iterator/array.js
new file mode 100644
index 0000000000..d7a46a4819
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/array.js
@@ -0,0 +1,32 @@
+"use strict";
+
+var setPrototypeOf = require("es5-ext/object/set-prototype-of")
+  , contains       = require("es5-ext/string/#/contains")
+  , d              = require("d")
+  , Symbol         = require("es6-symbol")
+  , Iterator       = require("./");
+
+var defineProperty = Object.defineProperty, ArrayIterator;
+
+ArrayIterator = module.exports = function (arr, kind) {
+	if (!(this instanceof ArrayIterator)) throw new TypeError("Constructor requires 'new'");
+	Iterator.call(this, arr);
+	if (!kind) kind = "value";
+	else if (contains.call(kind, "key+value")) kind = "key+value";
+	else if (contains.call(kind, "key")) kind = "key";
+	else kind = "value";
+	defineProperty(this, "__kind__", d("", kind));
+};
+if (setPrototypeOf) setPrototypeOf(ArrayIterator, Iterator);
+
+// Internal %ArrayIteratorPrototype% doesn't expose its constructor
+delete ArrayIterator.prototype.constructor;
+
+ArrayIterator.prototype = Object.create(Iterator.prototype, {
+	_resolve: d(function (i) {
+		if (this.__kind__ === "value") return this.__list__[i];
+		if (this.__kind__ === "key+value") return [i, this.__list__[i]];
+		return i;
+	})
+});
+defineProperty(ArrayIterator.prototype, Symbol.toStringTag, d("c", "Array Iterator"));
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/for-of.js b/kbase-extension/static/ext_packages/igv/es6-iterator/for-of.js
new file mode 100644
index 0000000000..5d15c349fd
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/for-of.js
@@ -0,0 +1,47 @@
+"use strict";
+
+var isArguments = require("es5-ext/function/is-arguments")
+  , callable    = require("es5-ext/object/valid-callable")
+  , isString    = require("es5-ext/string/is-string")
+  , get         = require("./get");
+
+var isArray = Array.isArray, call = Function.prototype.call, some = Array.prototype.some;
+
+module.exports = function (iterable, cb /*, thisArg*/) {
+	var mode, thisArg = arguments[2], result, doBreak, broken, i, length, char, code;
+	if (isArray(iterable) || isArguments(iterable)) mode = "array";
+	else if (isString(iterable)) mode = "string";
+	else iterable = get(iterable);
+
+	callable(cb);
+	doBreak = function () {
+		broken = true;
+	};
+	if (mode === "array") {
+		some.call(iterable, function (value) {
+			call.call(cb, thisArg, value, doBreak);
+			return broken;
+		});
+		return;
+	}
+	if (mode === "string") {
+		length = iterable.length;
+		for (i = 0; i < length; ++i) {
+			char = iterable[i];
+			if (i + 1 < length) {
+				code = char.charCodeAt(0);
+				if (code >= 0xd800 && code <= 0xdbff) char += iterable[++i];
+			}
+			call.call(cb, thisArg, char, doBreak);
+			if (broken) break;
+		}
+		return;
+	}
+	result = iterable.next();
+
+	while (!result.done) {
+		call.call(cb, thisArg, result.value, doBreak);
+		if (broken) return;
+		result = iterable.next();
+	}
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/get.js b/kbase-extension/static/ext_packages/igv/es6-iterator/get.js
new file mode 100644
index 0000000000..d36c9e2475
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/get.js
@@ -0,0 +1,15 @@
+"use strict";
+
+var isArguments    = require("es5-ext/function/is-arguments")
+  , isString       = require("es5-ext/string/is-string")
+  , ArrayIterator  = require("./array")
+  , StringIterator = require("./string")
+  , iterable       = require("./valid-iterable")
+  , iteratorSymbol = require("es6-symbol").iterator;
+
+module.exports = function (obj) {
+	if (typeof iterable(obj)[iteratorSymbol] === "function") return obj[iteratorSymbol]();
+	if (isArguments(obj)) return new ArrayIterator(obj);
+	if (isString(obj)) return new StringIterator(obj);
+	return new ArrayIterator(obj);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/index.js b/kbase-extension/static/ext_packages/igv/es6-iterator/index.js
new file mode 100644
index 0000000000..790475fdda
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/index.js
@@ -0,0 +1,106 @@
+"use strict";
+
+var clear    = require("es5-ext/array/#/clear")
+  , assign   = require("es5-ext/object/assign")
+  , callable = require("es5-ext/object/valid-callable")
+  , value    = require("es5-ext/object/valid-value")
+  , d        = require("d")
+  , autoBind = require("d/auto-bind")
+  , Symbol   = require("es6-symbol");
+
+var defineProperty = Object.defineProperty, defineProperties = Object.defineProperties, Iterator;
+
+module.exports = Iterator = function (list, context) {
+	if (!(this instanceof Iterator)) throw new TypeError("Constructor requires 'new'");
+	defineProperties(this, {
+		__list__: d("w", value(list)),
+		__context__: d("w", context),
+		__nextIndex__: d("w", 0)
+	});
+	if (!context) return;
+	callable(context.on);
+	context.on("_add", this._onAdd);
+	context.on("_delete", this._onDelete);
+	context.on("_clear", this._onClear);
+};
+
+// Internal %IteratorPrototype% doesn't expose its constructor
+delete Iterator.prototype.constructor;
+
+defineProperties(
+	Iterator.prototype,
+	assign(
+		{
+			_next: d(function () {
+				var i;
+				if (!this.__list__) return undefined;
+				if (this.__redo__) {
+					i = this.__redo__.shift();
+					if (i !== undefined) return i;
+				}
+				if (this.__nextIndex__ < this.__list__.length) return this.__nextIndex__++;
+				this._unBind();
+				return undefined;
+			}),
+			next: d(function () {
+				return this._createResult(this._next());
+			}),
+			_createResult: d(function (i) {
+				if (i === undefined) return { done: true, value: undefined };
+				return { done: false, value: this._resolve(i) };
+			}),
+			_resolve: d(function (i) {
+				return this.__list__[i];
+			}),
+			_unBind: d(function () {
+				this.__list__ = null;
+				delete this.__redo__;
+				if (!this.__context__) return;
+				this.__context__.off("_add", this._onAdd);
+				this.__context__.off("_delete", this._onDelete);
+				this.__context__.off("_clear", this._onClear);
+				this.__context__ = null;
+			}),
+			toString: d(function () {
+				return "[object " + (this[Symbol.toStringTag] || "Object") + "]";
+			})
+		},
+		autoBind({
+			_onAdd: d(function (index) {
+				if (index >= this.__nextIndex__) return;
+				++this.__nextIndex__;
+				if (!this.__redo__) {
+					defineProperty(this, "__redo__", d("c", [index]));
+					return;
+				}
+				this.__redo__.forEach(function (redo, i) {
+					if (redo >= index) this.__redo__[i] = ++redo;
+				}, this);
+				this.__redo__.push(index);
+			}),
+			_onDelete: d(function (index) {
+				var i;
+				if (index >= this.__nextIndex__) return;
+				--this.__nextIndex__;
+				if (!this.__redo__) return;
+				i = this.__redo__.indexOf(index);
+				if (i !== -1) this.__redo__.splice(i, 1);
+				this.__redo__.forEach(function (redo, j) {
+					if (redo > index) this.__redo__[j] = --redo;
+				}, this);
+			}),
+			_onClear: d(function () {
+				if (this.__redo__) clear.call(this.__redo__);
+				this.__nextIndex__ = 0;
+			})
+		})
+	)
+);
+
+defineProperty(
+	Iterator.prototype,
+	Symbol.iterator,
+	d(function () {
+		return this;
+	})
+);
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/is-iterable.js b/kbase-extension/static/ext_packages/igv/es6-iterator/is-iterable.js
new file mode 100644
index 0000000000..cda7dfeb38
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/is-iterable.js
@@ -0,0 +1,16 @@
+"use strict";
+
+var isArguments = require("es5-ext/function/is-arguments")
+  , isValue     = require("es5-ext/object/is-value")
+  , isString    = require("es5-ext/string/is-string");
+
+var iteratorSymbol = require("es6-symbol").iterator
+  , isArray        = Array.isArray;
+
+module.exports = function (value) {
+	if (!isValue(value)) return false;
+	if (isArray(value)) return true;
+	if (isString(value)) return true;
+	if (isArguments(value)) return true;
+	return typeof value[iteratorSymbol] === "function";
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/package.json b/kbase-extension/static/ext_packages/igv/es6-iterator/package.json
new file mode 100644
index 0000000000..a657bfe471
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/package.json
@@ -0,0 +1,78 @@
+{
+  "_args": [
+    [
+      "es6-iterator@2.0.3",
+      "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components"
+    ]
+  ],
+  "_from": "es6-iterator@2.0.3",
+  "_id": "es6-iterator@2.0.3",
+  "_inBundle": false,
+  "_integrity": "sha1-p96IkUGgWpSwhUQDstCg+/qY87c=",
+  "_location": "/es6-iterator",
+  "_phantomChildren": {},
+  "_requested": {
+    "type": "version",
+    "registry": true,
+    "raw": "es6-iterator@2.0.3",
+    "name": "es6-iterator",
+    "escapedName": "es6-iterator",
+    "rawSpec": "2.0.3",
+    "saveSpec": null,
+    "fetchSpec": "2.0.3"
+  },
+  "_requiredBy": [
+    "/es5-ext",
+    "/es6-set"
+  ],
+  "_resolved": "https://registry.npmjs.org/es6-iterator/-/es6-iterator-2.0.3.tgz",
+  "_spec": "2.0.3",
+  "_where": "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components",
+  "author": {
+    "name": "Mariusz Nowak",
+    "email": "medyk@medikoo.com",
+    "url": "http://www.medikoo.com/"
+  },
+  "bugs": {
+    "url": "https://github.com/medikoo/es6-iterator/issues"
+  },
+  "dependencies": {
+    "d": "1",
+    "es5-ext": "^0.10.35",
+    "es6-symbol": "^3.1.1"
+  },
+  "description": "Iterator abstraction based on ES6 specification",
+  "devDependencies": {
+    "eslint": "^4.9",
+    "eslint-config-medikoo-es5": "^1.4.4",
+    "event-emitter": "^0.3.5",
+    "tad": "^0.2.7"
+  },
+  "eslintConfig": {
+    "extends": "medikoo-es5",
+    "root": true,
+    "rules": {
+      "no-extend-native": "off"
+    }
+  },
+  "homepage": "https://github.com/medikoo/es6-iterator#readme",
+  "keywords": [
+    "iterator",
+    "array",
+    "list",
+    "set",
+    "map",
+    "generator"
+  ],
+  "license": "MIT",
+  "name": "es6-iterator",
+  "repository": {
+    "type": "git",
+    "url": "git://github.com/medikoo/es6-iterator.git"
+  },
+  "scripts": {
+    "lint": "eslint --ignore-path=.gitignore .",
+    "test": "node ./node_modules/tad/bin/tad"
+  },
+  "version": "2.0.3"
+}
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/string.js b/kbase-extension/static/ext_packages/igv/es6-iterator/string.js
new file mode 100644
index 0000000000..48882252b3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/string.js
@@ -0,0 +1,39 @@
+// Thanks @mathiasbynens
+// http://mathiasbynens.be/notes/javascript-unicode#iterating-over-symbols
+
+"use strict";
+
+var setPrototypeOf = require("es5-ext/object/set-prototype-of")
+  , d              = require("d")
+  , Symbol         = require("es6-symbol")
+  , Iterator       = require("./");
+
+var defineProperty = Object.defineProperty, StringIterator;
+
+StringIterator = module.exports = function (str) {
+	if (!(this instanceof StringIterator)) throw new TypeError("Constructor requires 'new'");
+	str = String(str);
+	Iterator.call(this, str);
+	defineProperty(this, "__length__", d("", str.length));
+};
+if (setPrototypeOf) setPrototypeOf(StringIterator, Iterator);
+
+// Internal %ArrayIteratorPrototype% doesn't expose its constructor
+delete StringIterator.prototype.constructor;
+
+StringIterator.prototype = Object.create(Iterator.prototype, {
+	_next: d(function () {
+		if (!this.__list__) return undefined;
+		if (this.__nextIndex__ < this.__length__) return this.__nextIndex__++;
+		this._unBind();
+		return undefined;
+	}),
+	_resolve: d(function (i) {
+		var char = this.__list__[i], code;
+		if (this.__nextIndex__ === this.__length__) return char;
+		code = char.charCodeAt(0);
+		if (code >= 0xd800 && code <= 0xdbff) return char + this.__list__[this.__nextIndex__++];
+		return char;
+	})
+});
+defineProperty(StringIterator.prototype, Symbol.toStringTag, d("c", "String Iterator"));
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/test/#/chain.js b/kbase-extension/static/ext_packages/igv/es6-iterator/test/#/chain.js
new file mode 100644
index 0000000000..457356f2f1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/test/#/chain.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var Iterator = require("../../");
+
+module.exports = function (t, a) {
+	var i1 = new Iterator(["raz", "dwa", "trzy"])
+	  , i2 = new Iterator(["cztery", "pięć", "sześć"])
+	  , i3 = new Iterator(["siedem", "osiem", "dziewięć"])
+
+	  , iterator = t.call(i1, i2, i3);
+
+	a.deep(iterator.next(), { done: false, value: "raz" }, "#1");
+	a.deep(iterator.next(), { done: false, value: "dwa" }, "#2");
+	a.deep(iterator.next(), { done: false, value: "trzy" }, "#3");
+	a.deep(iterator.next(), { done: false, value: "cztery" }, "#4");
+	a.deep(iterator.next(), { done: false, value: "pięć" }, "#5");
+	a.deep(iterator.next(), { done: false, value: "sześć" }, "#6");
+	a.deep(iterator.next(), { done: false, value: "siedem" }, "#7");
+	a.deep(iterator.next(), { done: false, value: "osiem" }, "#8");
+	a.deep(iterator.next(), { done: false, value: "dziewięć" }, "#9");
+	a.deep(iterator.next(), { done: true, value: undefined }, "Done #1");
+	a.deep(iterator.next(), { done: true, value: undefined }, "Done #2");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/test/.eslintrc.json b/kbase-extension/static/ext_packages/igv/es6-iterator/test/.eslintrc.json
new file mode 100644
index 0000000000..99f0b65533
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/test/.eslintrc.json
@@ -0,0 +1,5 @@
+{
+  "rules": {
+    "id-length": "off"
+  }
+}
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/test/array.js b/kbase-extension/static/ext_packages/igv/es6-iterator/test/array.js
new file mode 100644
index 0000000000..447dfa7328
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/test/array.js
@@ -0,0 +1,67 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator;
+
+module.exports = function (T) {
+	return {
+		"Values": function (a) {
+			var x = ["raz", "dwa", "trzy", "cztery", "pięć", "sześć"], it;
+
+			it = new T(x);
+			a(it[iteratorSymbol](), it, "@@iterator");
+			a.deep(it.next(), { done: false, value: "raz" }, "#1");
+			a.deep(it.next(), { done: false, value: "dwa" }, "#2");
+			x.splice(1, 0, "elo");
+			a.deep(it.next(), { done: false, value: "dwa" }, "Insert");
+			a.deep(it.next(), { done: false, value: "trzy" }, "#3");
+			a.deep(it.next(), { done: false, value: "cztery" }, "#4");
+			x.pop();
+			a.deep(it.next(), { done: false, value: "pięć" }, "#5");
+			a.deep(it.next(), { done: true, value: undefined }, "End");
+		},
+		"Keys & Values": function (a) {
+			var x = ["raz", "dwa", "trzy", "cztery", "pięć", "sześć"], it;
+
+			it = new T(x, "key+value");
+			a(it[iteratorSymbol](), it, "@@iterator");
+			a.deep(it.next(), { done: false, value: [0, "raz"] }, "#1");
+			a.deep(it.next(), { done: false, value: [1, "dwa"] }, "#2");
+			x.splice(1, 0, "elo");
+			a.deep(it.next(), { done: false, value: [2, "dwa"] }, "Insert");
+			a.deep(it.next(), { done: false, value: [3, "trzy"] }, "#3");
+			a.deep(it.next(), { done: false, value: [4, "cztery"] }, "#4");
+			x.pop();
+			a.deep(it.next(), { done: false, value: [5, "pięć"] }, "#5");
+			a.deep(it.next(), { done: true, value: undefined }, "End");
+		},
+		"Keys": function (a) {
+			var x = ["raz", "dwa", "trzy", "cztery", "pięć", "sześć"], it;
+
+			it = new T(x, "key");
+			a(it[iteratorSymbol](), it, "@@iterator");
+			a.deep(it.next(), { done: false, value: 0 }, "#1");
+			a.deep(it.next(), { done: false, value: 1 }, "#2");
+			x.splice(1, 0, "elo");
+			a.deep(it.next(), { done: false, value: 2 }, "Insert");
+			a.deep(it.next(), { done: false, value: 3 }, "#3");
+			a.deep(it.next(), { done: false, value: 4 }, "#4");
+			x.pop();
+			a.deep(it.next(), { done: false, value: 5 }, "#5");
+			a.deep(it.next(), { done: true, value: undefined }, "End");
+		},
+		"Sparse": function (a) {
+			var x = new Array(6), it;
+
+			x[2] = "raz";
+			x[4] = "dwa";
+			it = new T(x);
+			a.deep(it.next(), { done: false, value: undefined }, "#1");
+			a.deep(it.next(), { done: false, value: undefined }, "#2");
+			a.deep(it.next(), { done: false, value: "raz" }, "#3");
+			a.deep(it.next(), { done: false, value: undefined }, "#4");
+			a.deep(it.next(), { done: false, value: "dwa" }, "#5");
+			a.deep(it.next(), { done: false, value: undefined }, "#6");
+			a.deep(it.next(), { done: true, value: undefined }, "End");
+		}
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/test/for-of.js b/kbase-extension/static/ext_packages/igv/es6-iterator/test/for-of.js
new file mode 100644
index 0000000000..9b47e979dd
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/test/for-of.js
@@ -0,0 +1,42 @@
+"use strict";
+
+var ArrayIterator = require("../array")
+
+  , slice = Array.prototype.slice;
+
+module.exports = function (t, a) {
+	var i = 0, x = ["raz", "dwa", "trzy"], y = {}, called = 0;
+	t(x, function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "Array " + i + "#");
+		a(this, y, "Array: context:  " + i++ + "#");
+	}, y);
+	i = 0;
+	t((function () {
+ return arguments;
+}("raz", "dwa", "trzy")), function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "Arguments" + i + "#");
+		a(this, y, "Arguments: context:  " + i++ + "#");
+	}, y);
+	i = 0;
+	t(x = "foo", function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "String " + i + "#");
+		a(this, y, "Regular String: context:  " + i++ + "#");
+	}, y);
+	i = 0;
+	x = ["r", "💩", "z"];
+	t("r💩z", function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "String " + i + "#");
+		a(this, y, "Unicode String: context:  " + i++ + "#");
+	}, y);
+	i = 0;
+	t(new ArrayIterator(x), function () {
+		a.deep(slice.call(arguments, 0, 1), [x[i]], "Iterator " + i + "#");
+		a(this, y, "Iterator: context:  " + i++ + "#");
+	}, y);
+
+	t(x = ["raz", "dwa", "trzy"], function (value, doBreak) {
+		++called;
+		return doBreak();
+	});
+	a(called, 1, "Break");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/test/get.js b/kbase-extension/static/ext_packages/igv/es6-iterator/test/get.js
new file mode 100644
index 0000000000..c5947d3e61
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/test/get.js
@@ -0,0 +1,27 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator
+  , Iterator       = require("../");
+
+module.exports = function (t, a) {
+	var iterator;
+	a.throws(function () {
+ t();
+}, TypeError, "Null");
+	a.throws(function () {
+ t({});
+}, TypeError, "Plain object");
+	a.throws(function () {
+ t({ length: 0 });
+}, TypeError, "Array-like");
+	iterator = {};
+	iterator[iteratorSymbol] = function () {
+ return new Iterator([]);
+};
+	a(t(iterator) instanceof Iterator, true, "Iterator");
+	a(String(t([])), "[object Array Iterator]", " Array");
+	a(String(t(function () {
+ return arguments;
+}())), "[object Array Iterator]", " Arguments");
+	a(String(t("foo")), "[object String Iterator]", "String");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/test/index.js b/kbase-extension/static/ext_packages/igv/es6-iterator/test/index.js
new file mode 100644
index 0000000000..4898218545
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/test/index.js
@@ -0,0 +1,99 @@
+"use strict";
+
+var ee             = require("event-emitter")
+  , iteratorSymbol = require("es6-symbol").iterator;
+
+module.exports = function (T) {
+	return {
+		"": function (a) {
+			var x = ["raz", "dwa", "trzy", "cztery", "pięć"], it, y, z;
+
+			it = new T(x);
+			a(it[iteratorSymbol](), it, "@@iterator");
+			y = it.next();
+			a.deep(y, { done: false, value: "raz" }, "#1");
+			z = it.next();
+			a.not(y, z, "Recreate result");
+			a.deep(z, { done: false, value: "dwa" }, "#2");
+			a.deep(it.next(), { done: false, value: "trzy" }, "#3");
+			a.deep(it.next(), { done: false, value: "cztery" }, "#4");
+			a.deep(it.next(), { done: false, value: "pięć" }, "#5");
+			a.deep(y = it.next(), { done: true, value: undefined }, "End");
+			a.not(y, it.next(), "Recreate result on dead");
+		},
+		"Emited": function (a) {
+			var x = ["raz", "dwa", "trzy", "cztery", "pięć"], y, it;
+
+			y = ee();
+			it = new T(x, y);
+			a.deep(it.next(), { done: false, value: "raz" }, "#1");
+			a.deep(it.next(), { done: false, value: "dwa" }, "#2");
+			y.emit("_add", x.push("sześć") - 1);
+			a.deep(it.next(), { done: false, value: "trzy" }, "#3");
+			x.splice(1, 0, "półtora");
+			y.emit("_add", 1);
+			a.deep(it.next(), { done: false, value: "półtora" }, "Insert");
+			x.splice(5, 1);
+			y.emit("_delete", 5);
+			a.deep(it.next(), { done: false, value: "cztery" }, "#4");
+			a.deep(it.next(), { done: false, value: "sześć" }, "#5");
+			a.deep(it.next(), { done: true, value: undefined }, "End");
+		},
+		"Emited #2": function (a) {
+			var x = ["raz", "dwa", "trzy", "cztery", "pięć", "sześć"], y, it;
+
+			y = ee();
+			it = new T(x, y);
+			a.deep(it.next(), { done: false, value: "raz" }, "#1");
+			a.deep(it.next(), { done: false, value: "dwa" }, "#2");
+			x.splice(1, 0, "półtora");
+			y.emit("_add", 1);
+			x.splice(1, 0, "1.25");
+			y.emit("_add", 1);
+			x.splice(0, 1);
+			y.emit("_delete", 0);
+			a.deep(it.next(), { done: false, value: "półtora" }, "Insert");
+			a.deep(it.next(), { done: false, value: "1.25" }, "Insert #2");
+			a.deep(it.next(), { done: false, value: "trzy" }, "#3");
+			a.deep(it.next(), { done: false, value: "cztery" }, "#4");
+			x.splice(5, 1);
+			y.emit("_delete", 5);
+			a.deep(it.next(), { done: false, value: "sześć" }, "#5");
+			a.deep(it.next(), { done: true, value: undefined }, "End");
+		},
+		"Emited: Clear #1": function (a) {
+			var x = ["raz", "dwa", "trzy", "cztery", "pięć", "sześć"], y, it;
+
+			y = ee();
+			it = new T(x, y);
+			a.deep(it.next(), { done: false, value: "raz" }, "#1");
+			a.deep(it.next(), { done: false, value: "dwa" }, "#2");
+			x.length = 0;
+			y.emit("_clear");
+			a.deep(it.next(), { done: true, value: undefined }, "End");
+		},
+		"Emited: Clear #2": function (a) {
+			var x = ["raz", "dwa", "trzy", "cztery", "pięć", "sześć"], y, it;
+
+			y = ee();
+			it = new T(x, y);
+			a.deep(it.next(), { done: false, value: "raz" }, "#1");
+			a.deep(it.next(), { done: false, value: "dwa" }, "#2");
+			x.length = 0;
+			y.emit("_clear");
+			x.push("foo");
+			x.push("bar");
+			a.deep(it.next(), { done: false, value: "foo" }, "#3");
+			a.deep(it.next(), { done: false, value: "bar" }, "#4");
+			x.splice(1, 0, "półtora");
+			y.emit("_add", 1);
+			x.splice(1, 0, "1.25");
+			y.emit("_add", 1);
+			x.splice(0, 1);
+			y.emit("_delete", 0);
+			a.deep(it.next(), { done: false, value: "półtora" }, "Insert");
+			a.deep(it.next(), { done: false, value: "1.25" }, "Insert #2");
+			a.deep(it.next(), { done: true, value: undefined }, "End");
+		}
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/test/is-iterable.js b/kbase-extension/static/ext_packages/igv/es6-iterator/test/is-iterable.js
new file mode 100644
index 0000000000..5787351a47
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/test/is-iterable.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator
+  , Iterator       = require("../");
+
+module.exports = function (t, a) {
+	var iterator;
+	a(t(), false, "Undefined");
+	a(t(123), false, "Number");
+	a(t({}), false, "Plain object");
+	a(t({ length: 0 }), false, "Array-like");
+	iterator = {};
+	iterator[iteratorSymbol] = function () {
+ return new Iterator([]);
+};
+	a(t(iterator), true, "Iterator");
+	a(t([]), true, "Array");
+	a(t("foo"), true, "String");
+	a(t(""), true, "Empty string");
+	a(t(function () {
+ return arguments;
+}()), true, "Arguments");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/test/string.js b/kbase-extension/static/ext_packages/igv/es6-iterator/test/string.js
new file mode 100644
index 0000000000..3f2a5b6797
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/test/string.js
@@ -0,0 +1,23 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator;
+
+module.exports = function (T, a) {
+	var it = new T("foobar");
+
+	a(it[iteratorSymbol](), it, "@@iterator");
+	a.deep(it.next(), { done: false, value: "f" }, "#1");
+	a.deep(it.next(), { done: false, value: "o" }, "#2");
+	a.deep(it.next(), { done: false, value: "o" }, "#3");
+	a.deep(it.next(), { done: false, value: "b" }, "#4");
+	a.deep(it.next(), { done: false, value: "a" }, "#5");
+	a.deep(it.next(), { done: false, value: "r" }, "#6");
+	a.deep(it.next(), { done: true, value: undefined }, "End");
+
+	a.h1("Outside of BMP");
+	it = new T("r💩z");
+	a.deep(it.next(), { done: false, value: "r" }, "#1");
+	a.deep(it.next(), { done: false, value: "💩" }, "#2");
+	a.deep(it.next(), { done: false, value: "z" }, "#3");
+	a.deep(it.next(), { done: true, value: undefined }, "End");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/test/valid-iterable.js b/kbase-extension/static/ext_packages/igv/es6-iterator/test/valid-iterable.js
new file mode 100644
index 0000000000..b8b2a8a619
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/test/valid-iterable.js
@@ -0,0 +1,28 @@
+"use strict";
+
+var iteratorSymbol = require("es6-symbol").iterator
+  , Iterator       = require("../");
+
+module.exports = function (t, a) {
+	var obj;
+	a.throws(function () {
+ t();
+}, TypeError, "Undefined");
+	a.throws(function () {
+ t({});
+}, TypeError, "Plain object");
+	a.throws(function () {
+ t({ length: 0 });
+}, TypeError, "Array-like");
+	obj = {};
+	obj[iteratorSymbol] = function () {
+ return new Iterator([]);
+};
+	a(t(obj), obj, "Iterator");
+	obj = [];
+	a(t(obj), obj, "Array");
+	obj = (function () {
+ return arguments;
+}());
+	a(t(obj), obj, "Arguments");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-iterator/valid-iterable.js b/kbase-extension/static/ext_packages/igv/es6-iterator/valid-iterable.js
new file mode 100644
index 0000000000..8c6e071598
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-iterator/valid-iterable.js
@@ -0,0 +1,8 @@
+"use strict";
+
+var isIterable = require("./is-iterable");
+
+module.exports = function (value) {
+	if (!isIterable(value)) throw new TypeError(value + " is not iterable");
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/.lint b/kbase-extension/static/ext_packages/igv/es6-set/.lint
new file mode 100644
index 0000000000..89386b35ca
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/.lint
@@ -0,0 +1,13 @@
+@root
+
+module
+
+tabs
+indent 2
+maxlen 100
+
+ass
+nomen
+plusplus
+
+predef+ Set
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/.npmignore b/kbase-extension/static/ext_packages/igv/es6-set/.npmignore
new file mode 100644
index 0000000000..155e41f691
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/.npmignore
@@ -0,0 +1,4 @@
+.DS_Store
+/node_modules
+/npm-debug.log
+/.lintcache
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/.travis.yml b/kbase-extension/static/ext_packages/igv/es6-set/.travis.yml
new file mode 100644
index 0000000000..09a917c05c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/.travis.yml
@@ -0,0 +1,13 @@
+sudo: false # http://docs.travis-ci.com/user/workers/container-based-infrastructure/
+language: node_js
+node_js:
+  - 0.12
+  - 4
+  - 6
+  - 7
+
+notifications:
+  email:
+    - medikoo+es6-set@medikoo.com
+
+script: "npm test && npm run lint"
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/CHANGES b/kbase-extension/static/ext_packages/igv/es6-set/CHANGES
new file mode 100644
index 0000000000..21ad4bf303
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/CHANGES
@@ -0,0 +1,34 @@
+v0.1.5  --  2017.03.16
+* Improve documentation
+* Update dependencies
+
+v0.1.4  --  2016.01.19
+* Ensure Set polyfill function name is `Set` (#2)
+
+v0.1.3  --  2015.11.18
+* Relax validation of native implementation (do not require proper stringification of Set.prototype)
+
+v0.1.2  --  2015.10.02
+* Improve native Set detection
+* Fix spelling of LICENSE
+* Set.prototype.filter extension
+* Update dependencies
+
+v0.1.1  --  2014.10.07
+* Fix isImplemented so it validates native Set properly
+* Add getFirst and getLast extensions
+* Configure linter scripts
+
+v0.1.0  --  2014.04.29
+* Assure strictly npm hosted dependencies
+* Introduce faster 'primitive' alternative (doesn't guarantee order of iteration)
+* Add isNativeImplemented, and some, every and copy method extensions
+* If native Set is provided polyfill extends it
+* Optimize forEach iteration
+* Remove comparator support (as it was removed from spec)
+* Provide @@toStringTag symbol, ad @@iterator symbols on iterators
+* Update to use latest dependencies versions
+* Improve interals
+
+v0.0.0  --  2013.10.12
+Initial (dev) version
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/LICENSE b/kbase-extension/static/ext_packages/igv/es6-set/LICENSE
new file mode 100644
index 0000000000..aaf35282f4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/LICENSE
@@ -0,0 +1,19 @@
+Copyright (C) 2013 Mariusz Nowak (www.medikoo.com)
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/README.md b/kbase-extension/static/ext_packages/igv/es6-set/README.md
new file mode 100644
index 0000000000..4ec0a005f5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/README.md
@@ -0,0 +1,74 @@
+# es6-set
+## Set collection as specified in ECMAScript6
+
+__Warning:  
+v0.1 version does not ensure O(1) algorithm complexity (but O(n)). This shortcoming will be addressed in v1.0__
+
+### Usage
+
+If you want to make sure your environment implements `Set`, do:
+
+```javascript
+require('es6-set/implement');
+```
+
+If you'd like to use native version when it exists and fallback to polyfill if it doesn't, but without implementing `Set` on global scope, do:
+
+```javascript
+var Set = require('es6-set');
+```
+
+If you strictly want to use polyfill even if native `Set` exists, do:
+
+```javascript
+var Set = require('es6-set/polyfill');
+```
+
+### Installation
+
+	$ npm install es6-set
+
+To port it to Browser or any other (non CJS) environment, use your favorite CJS bundler. No favorite yet? Try: [Browserify](http://browserify.org/), [Webmake](https://github.com/medikoo/modules-webmake) or [Webpack](http://webpack.github.io/)
+
+#### API
+
+Best is to refer to [specification](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-set-objects). Still if you want quick look, follow examples:
+
+```javascript
+var Set = require('es6-set');
+
+var set = new Set(['raz', 'dwa', {}]);
+
+set.size;          // 3
+set.has('raz');    // true
+set.has('foo');    // false
+set.add('foo');    // set
+set.size           // 4
+set.has('foo');    // true
+set.has('dwa');    // true
+set.delete('dwa'); // true
+set.size;          // 3
+
+set.forEach(function (value) {
+ // 'raz', {}, 'foo' iterated
+});
+
+// FF nightly only:
+for (value of set) {
+ // 'raz', {}, 'foo' iterated
+}
+
+var iterator = set.values();
+
+iterator.next(); // { done: false, value: 'raz' }
+iterator.next(); // { done: false, value: {} }
+iterator.next(); // { done: false, value: 'foo' }
+iterator.next(); // { done: true, value: undefined }
+
+set.clear(); // undefined
+set.size; // 0
+```
+
+## Tests [![Build Status](https://travis-ci.org/medikoo/es6-set.png)](https://travis-ci.org/medikoo/es6-set)
+
+	$ npm test
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/ext/copy.js b/kbase-extension/static/ext_packages/igv/es6-set/ext/copy.js
new file mode 100644
index 0000000000..a8fd5c20c8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/ext/copy.js
@@ -0,0 +1,5 @@
+'use strict';
+
+var Set = require('../');
+
+module.exports = function () { return new Set(this); };
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/ext/every.js b/kbase-extension/static/ext_packages/igv/es6-set/ext/every.js
new file mode 100644
index 0000000000..ea64ebc56f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/ext/every.js
@@ -0,0 +1,18 @@
+'use strict';
+
+var callable = require('es5-ext/object/valid-callable')
+  , forOf    = require('es6-iterator/for-of')
+
+  , call = Function.prototype.call;
+
+module.exports = function (cb/*, thisArg*/) {
+	var thisArg = arguments[1], result = true;
+	callable(cb);
+	forOf(this, function (value, doBreak) {
+		if (!call.call(cb, thisArg, value)) {
+			result = false;
+			doBreak();
+		}
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/ext/filter.js b/kbase-extension/static/ext_packages/igv/es6-set/ext/filter.js
new file mode 100644
index 0000000000..1178fc591c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/ext/filter.js
@@ -0,0 +1,18 @@
+'use strict';
+
+var callable = require('es5-ext/object/valid-callable')
+  , forOf    = require('es6-iterator/for-of')
+  , isSet    = require('../is-set')
+  , Set      = require('../')
+
+  , call = Function.prototype.call;
+
+module.exports = function (cb/*, thisArg*/) {
+	var thisArg = arguments[1], result;
+	callable(cb);
+	result = isSet(this) ? new this.constructor() : new Set();
+	forOf(this, function (value) {
+		if (call.call(cb, thisArg, value)) result.add(value);
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/ext/get-first.js b/kbase-extension/static/ext_packages/igv/es6-set/ext/get-first.js
new file mode 100644
index 0000000000..b5d89fc13f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/ext/get-first.js
@@ -0,0 +1,5 @@
+'use strict';
+
+module.exports = function () {
+	return this.values().next().value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/ext/get-last.js b/kbase-extension/static/ext_packages/igv/es6-set/ext/get-last.js
new file mode 100644
index 0000000000..d22ce737bc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/ext/get-last.js
@@ -0,0 +1,11 @@
+'use strict';
+
+module.exports = function () {
+	var value, iterator = this.values(), item;
+	while (true) {
+		item = iterator.next();
+		if (item.done) break;
+		value = item.value;
+	}
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/ext/some.js b/kbase-extension/static/ext_packages/igv/es6-set/ext/some.js
new file mode 100644
index 0000000000..400a5a0c62
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/ext/some.js
@@ -0,0 +1,18 @@
+'use strict';
+
+var callable = require('es5-ext/object/valid-callable')
+  , forOf    = require('es6-iterator/for-of')
+
+  , call = Function.prototype.call;
+
+module.exports = function (cb/*, thisArg*/) {
+	var thisArg = arguments[1], result = false;
+	callable(cb);
+	forOf(this, function (value, doBreak) {
+		if (call.call(cb, thisArg, value)) {
+			result = true;
+			doBreak();
+		}
+	});
+	return result;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/implement.js b/kbase-extension/static/ext_packages/igv/es6-set/implement.js
new file mode 100644
index 0000000000..f03362e083
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/implement.js
@@ -0,0 +1,7 @@
+'use strict';
+
+if (!require('./is-implemented')()) {
+	Object.defineProperty(require('es5-ext/global'), 'Set',
+		{ value: require('./polyfill'), configurable: true, enumerable: false,
+			writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/index.js b/kbase-extension/static/ext_packages/igv/es6-set/index.js
new file mode 100644
index 0000000000..daa7886195
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/index.js
@@ -0,0 +1,3 @@
+'use strict';
+
+module.exports = require('./is-implemented')() ? Set : require('./polyfill');
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/is-implemented.js b/kbase-extension/static/ext_packages/igv/es6-set/is-implemented.js
new file mode 100644
index 0000000000..7f1bfbb7cc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/is-implemented.js
@@ -0,0 +1,24 @@
+'use strict';
+
+module.exports = function () {
+	var set, iterator, result;
+	if (typeof Set !== 'function') return false;
+	set = new Set(['raz', 'dwa', 'trzy']);
+	if (String(set) !== '[object Set]') return false;
+	if (set.size !== 3) return false;
+	if (typeof set.add !== 'function') return false;
+	if (typeof set.clear !== 'function') return false;
+	if (typeof set.delete !== 'function') return false;
+	if (typeof set.entries !== 'function') return false;
+	if (typeof set.forEach !== 'function') return false;
+	if (typeof set.has !== 'function') return false;
+	if (typeof set.keys !== 'function') return false;
+	if (typeof set.values !== 'function') return false;
+
+	iterator = set.values();
+	result = iterator.next();
+	if (result.done !== false) return false;
+	if (result.value !== 'raz') return false;
+
+	return true;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/is-native-implemented.js b/kbase-extension/static/ext_packages/igv/es6-set/is-native-implemented.js
new file mode 100644
index 0000000000..e8b0160ec0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/is-native-implemented.js
@@ -0,0 +1,9 @@
+// Exports true if environment provides native `Set` implementation,
+// whatever that is.
+
+'use strict';
+
+module.exports = (function () {
+	if (typeof Set === 'undefined') return false;
+	return (Object.prototype.toString.call(Set.prototype) === '[object Set]');
+}());
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/is-set.js b/kbase-extension/static/ext_packages/igv/es6-set/is-set.js
new file mode 100644
index 0000000000..6b491ddee3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/is-set.js
@@ -0,0 +1,12 @@
+'use strict';
+
+var toString          = Object.prototype.toString
+  , toStringTagSymbol = require('es6-symbol').toStringTag
+
+  , id = '[object Set]'
+  , Global = (typeof Set === 'undefined') ? null : Set;
+
+module.exports = function (x) {
+	return (x && ((Global && ((x instanceof Global) || (x === Global.prototype))) ||
+			(toString.call(x) === id) || (x[toStringTagSymbol] === 'Set'))) || false;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/package.json b/kbase-extension/static/ext_packages/igv/es6-set/package.json
new file mode 100644
index 0000000000..379e774f1f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/package.json
@@ -0,0 +1,70 @@
+{
+  "_from": "es6-set",
+  "_id": "es6-set@0.1.5",
+  "_inBundle": false,
+  "_integrity": "sha1-0rPsXU2ADO2BjbU40ol02wpzzLE=",
+  "_location": "/es6-set",
+  "_phantomChildren": {},
+  "_requested": {
+    "type": "tag",
+    "registry": true,
+    "raw": "es6-set",
+    "name": "es6-set",
+    "escapedName": "es6-set",
+    "rawSpec": "",
+    "saveSpec": null,
+    "fetchSpec": "latest"
+  },
+  "_requiredBy": [
+    "#USER",
+    "/"
+  ],
+  "_resolved": "https://registry.npmjs.org/es6-set/-/es6-set-0.1.5.tgz",
+  "_shasum": "d2b3ec5d4d800ced818db538d28974db0a73ccb1",
+  "_spec": "es6-set",
+  "_where": "/Users/jim/DMZ/narrative-mar-2018",
+  "author": {
+    "name": "Mariusz Nowak",
+    "email": "medyk@medikoo.com",
+    "url": "http://www.medikoo.com/"
+  },
+  "bugs": {
+    "url": "https://github.com/medikoo/es6-set/issues"
+  },
+  "bundleDependencies": false,
+  "dependencies": {
+    "d": "1",
+    "es5-ext": "~0.10.14",
+    "es6-iterator": "~2.0.1",
+    "es6-symbol": "3.1.1",
+    "event-emitter": "~0.3.5"
+  },
+  "deprecated": false,
+  "description": "ECMAScript6 Set polyfill",
+  "devDependencies": {
+    "tad": "~0.2.7",
+    "xlint": "~0.2.2",
+    "xlint-jslint-medikoo": "~0.1.4"
+  },
+  "homepage": "https://github.com/medikoo/es6-set#readme",
+  "keywords": [
+    "set",
+    "collection",
+    "es6",
+    "harmony",
+    "list",
+    "hash"
+  ],
+  "license": "MIT",
+  "name": "es6-set",
+  "repository": {
+    "type": "git",
+    "url": "git://github.com/medikoo/es6-set.git"
+  },
+  "scripts": {
+    "lint": "node node_modules/xlint/bin/xlint --linter=node_modules/xlint-jslint-medikoo/index.js --no-cache --no-stream",
+    "lint-console": "node node_modules/xlint/bin/xlint --linter=node_modules/xlint-jslint-medikoo/index.js --watch",
+    "test": "node ./node_modules/tad/bin/tad"
+  },
+  "version": "0.1.5"
+}
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/polyfill.js b/kbase-extension/static/ext_packages/igv/es6-set/polyfill.js
new file mode 100644
index 0000000000..51b1e63079
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/polyfill.js
@@ -0,0 +1,80 @@
+'use strict';
+
+var clear          = require('es5-ext/array/#/clear')
+  , eIndexOf       = require('es5-ext/array/#/e-index-of')
+  , setPrototypeOf = require('es5-ext/object/set-prototype-of')
+  , callable       = require('es5-ext/object/valid-callable')
+  , d              = require('d')
+  , ee             = require('event-emitter')
+  , Symbol         = require('es6-symbol')
+  , iterator       = require('es6-iterator/valid-iterable')
+  , forOf          = require('es6-iterator/for-of')
+  , Iterator       = require('./lib/iterator')
+  , isNative       = require('./is-native-implemented')
+
+  , call = Function.prototype.call
+  , defineProperty = Object.defineProperty, getPrototypeOf = Object.getPrototypeOf
+  , SetPoly, getValues, NativeSet;
+
+if (isNative) NativeSet = Set;
+
+module.exports = SetPoly = function Set(/*iterable*/) {
+	var iterable = arguments[0], self;
+	if (!(this instanceof SetPoly)) throw new TypeError('Constructor requires \'new\'');
+	if (isNative && setPrototypeOf) self = setPrototypeOf(new NativeSet(), getPrototypeOf(this));
+	else self = this;
+	if (iterable != null) iterator(iterable);
+	defineProperty(self, '__setData__', d('c', []));
+	if (!iterable) return self;
+	forOf(iterable, function (value) {
+		if (eIndexOf.call(this, value) !== -1) return;
+		this.push(value);
+	}, self.__setData__);
+	return self;
+};
+
+if (isNative) {
+	if (setPrototypeOf) setPrototypeOf(SetPoly, NativeSet);
+	SetPoly.prototype = Object.create(NativeSet.prototype, { constructor: d(SetPoly) });
+}
+
+ee(Object.defineProperties(SetPoly.prototype, {
+	add: d(function (value) {
+		if (this.has(value)) return this;
+		this.emit('_add', this.__setData__.push(value) - 1, value);
+		return this;
+	}),
+	clear: d(function () {
+		if (!this.__setData__.length) return;
+		clear.call(this.__setData__);
+		this.emit('_clear');
+	}),
+	delete: d(function (value) {
+		var index = eIndexOf.call(this.__setData__, value);
+		if (index === -1) return false;
+		this.__setData__.splice(index, 1);
+		this.emit('_delete', index, value);
+		return true;
+	}),
+	entries: d(function () { return new Iterator(this, 'key+value'); }),
+	forEach: d(function (cb/*, thisArg*/) {
+		var thisArg = arguments[1], iterator, result, value;
+		callable(cb);
+		iterator = this.values();
+		result = iterator._next();
+		while (result !== undefined) {
+			value = iterator._resolve(result);
+			call.call(cb, thisArg, value, value, this);
+			result = iterator._next();
+		}
+	}),
+	has: d(function (value) {
+		return (eIndexOf.call(this.__setData__, value) !== -1);
+	}),
+	keys: d(getValues = function () { return this.values(); }),
+	size: d.gs(function () { return this.__setData__.length; }),
+	values: d(function () { return new Iterator(this); }),
+	toString: d(function () { return '[object Set]'; })
+}));
+defineProperty(SetPoly.prototype, Symbol.iterator, d(getValues));
+defineProperty(SetPoly.prototype, Symbol.toStringTag, d('c', 'Set'));
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/primitive/index.js b/kbase-extension/static/ext_packages/igv/es6-set/primitive/index.js
new file mode 100644
index 0000000000..6bcad18d3f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/primitive/index.js
@@ -0,0 +1,87 @@
+'use strict';
+
+var callable       = require('es5-ext/object/valid-callable')
+  , clear          = require('es5-ext/object/clear')
+  , setPrototypeOf = require('es5-ext/object/set-prototype-of')
+  , d              = require('d')
+  , iterator       = require('es6-iterator/valid-iterable')
+  , forOf          = require('es6-iterator/for-of')
+  , Set            = require('../polyfill')
+  , Iterator       = require('../lib/primitive-iterator')
+  , isNative       = require('../is-native-implemented')
+
+  , create = Object.create, defineProperties = Object.defineProperties
+  , defineProperty = Object.defineProperty, getPrototypeOf = Object.getPrototypeOf
+  , hasOwnProperty = Object.prototype.hasOwnProperty
+  , PrimitiveSet;
+
+module.exports = PrimitiveSet = function (/*iterable, serialize*/) {
+	var iterable = arguments[0], serialize = arguments[1], self;
+	if (!(this instanceof PrimitiveSet)) throw new TypeError('Constructor requires \'new\'');
+	if (isNative && setPrototypeOf) self = setPrototypeOf(new Set(), getPrototypeOf(this));
+	else self = this;
+	if (iterable != null) iterator(iterable);
+	if (serialize !== undefined) {
+		callable(serialize);
+		defineProperty(self, '_serialize', d('', serialize));
+	}
+	defineProperties(self, {
+		__setData__: d('c', create(null)),
+		__size__: d('w', 0)
+	});
+	if (!iterable) return self;
+	forOf(iterable, function (value) {
+		var key = self._serialize(value);
+		if (key == null) throw new TypeError(value + " cannot be serialized");
+		if (hasOwnProperty.call(self.__setData__, key)) return;
+		self.__setData__[key] = value;
+		++self.__size__;
+	});
+	return self;
+};
+if (setPrototypeOf) setPrototypeOf(PrimitiveSet, Set);
+
+PrimitiveSet.prototype = create(Set.prototype, {
+	constructor: d(PrimitiveSet),
+	_serialize: d(function (value) {
+		if (value && (typeof value.toString !== 'function')) return null;
+		return String(value);
+	}),
+	add: d(function (value) {
+		var key = this._serialize(value);
+		if (key == null) throw new TypeError(value + " cannot be serialized");
+		if (hasOwnProperty.call(this.__setData__, key)) return this;
+		this.__setData__[key] = value;
+		++this.__size__;
+		this.emit('_add', key);
+		return this;
+	}),
+	clear: d(function () {
+		if (!this.__size__) return;
+		clear(this.__setData__);
+		this.__size__ = 0;
+		this.emit('_clear');
+	}),
+	delete: d(function (value) {
+		var key = this._serialize(value);
+		if (key == null) return false;
+		if (!hasOwnProperty.call(this.__setData__, key)) return false;
+		delete this.__setData__[key];
+		--this.__size__;
+		this.emit('_delete', key);
+		return true;
+	}),
+	entries: d(function () { return new Iterator(this, 'key+value'); }),
+	get: d(function (key) {
+		key = this._serialize(key);
+		if (key == null) return;
+		return this.__setData__[key];
+	}),
+	has: d(function (value) {
+		var key = this._serialize(value);
+		if (key == null) return false;
+		return hasOwnProperty.call(this.__setData__, key);
+	}),
+	size: d.gs(function () { return this.__size__; }),
+	values: d(function () { return new Iterator(this); })
+});
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/ext/copy.js b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/copy.js
new file mode 100644
index 0000000000..84fe912a36
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/copy.js
@@ -0,0 +1,12 @@
+'use strict';
+
+var toArray = require('es5-ext/array/to-array')
+  , Set     = require('../../');
+
+module.exports = function (t, a) {
+	var content = ['raz', 2, true], set = new Set(content), copy;
+
+	copy = t.call(set);
+	a.not(copy, set, "Copy");
+	a.deep(toArray(copy), content, "Content");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/ext/every.js b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/every.js
new file mode 100644
index 0000000000..f56ca385fa
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/every.js
@@ -0,0 +1,9 @@
+'use strict';
+
+var Set = require('../../');
+
+module.exports = function (t, a) {
+	a(t.call(new Set(), Boolean), true, "Empty set");
+	a(t.call(new Set([2, 3, 4]), Boolean), true, "Truthy");
+	a(t.call(new Set([2, 0, 4]), Boolean), false, "Falsy");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/ext/filter.js b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/filter.js
new file mode 100644
index 0000000000..46981859b6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/filter.js
@@ -0,0 +1,12 @@
+'use strict';
+
+var aFrom = require('es5-ext/array/from')
+
+  , Set = require('../../');
+
+module.exports = function (t, a) {
+	a.deep(aFrom(t.call(new Set(), Boolean)), [], "Empty set");
+	a.deep(aFrom(t.call(new Set([2, 3, 4]), Boolean)), [2, 3, 4], "All true");
+	a.deep(aFrom(t.call(new Set([0, false, 4]), Boolean)), [4], "Some false");
+	a.deep(aFrom(t.call(new Set([0, false, null]), Boolean)), [], "All false");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/ext/get-first.js b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/get-first.js
new file mode 100644
index 0000000000..f99829e5af
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/get-first.js
@@ -0,0 +1,12 @@
+'use strict';
+
+var Set     = require('../../');
+
+module.exports = function (t, a) {
+	var content = ['raz', 2, true], set = new Set(content);
+
+	a(t.call(set), 'raz');
+
+	set = new Set();
+	a(t.call(set), undefined);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/ext/get-last.js b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/get-last.js
new file mode 100644
index 0000000000..1dcc993ed0
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/get-last.js
@@ -0,0 +1,12 @@
+'use strict';
+
+var Set     = require('../../');
+
+module.exports = function (t, a) {
+	var content = ['raz', 2, true], set = new Set(content);
+
+	a(t.call(set), true);
+
+	set = new Set();
+	a(t.call(set), undefined);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/ext/some.js b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/some.js
new file mode 100644
index 0000000000..84ce11916a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/ext/some.js
@@ -0,0 +1,10 @@
+'use strict';
+
+var Set = require('../../');
+
+module.exports = function (t, a) {
+	a(t.call(new Set(), Boolean), false, "Empty set");
+	a(t.call(new Set([2, 3, 4]), Boolean), true, "All true");
+	a(t.call(new Set([0, false, 4]), Boolean), true, "Some false");
+	a(t.call(new Set([0, false, null]), Boolean), false, "All false");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/implement.js b/kbase-extension/static/ext_packages/igv/es6-set/test/implement.js
new file mode 100644
index 0000000000..4882d3786a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/implement.js
@@ -0,0 +1,3 @@
+'use strict';
+
+module.exports = function (t, a) { a(typeof Set, 'function'); };
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/index.js b/kbase-extension/static/ext_packages/igv/es6-set/test/index.js
new file mode 100644
index 0000000000..19c6486509
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/index.js
@@ -0,0 +1,3 @@
+'use strict';
+
+module.exports = function (T, a) { a((new T(['raz', 'dwa'])).size, 2); };
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/is-implemented.js b/kbase-extension/static/ext_packages/igv/es6-set/test/is-implemented.js
new file mode 100644
index 0000000000..124793e737
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/is-implemented.js
@@ -0,0 +1,14 @@
+'use strict';
+
+var global   = require('es5-ext/global')
+  , polyfill = require('../polyfill');
+
+module.exports = function (t, a) {
+	var cache;
+	a(typeof t(), 'boolean');
+	cache = global.Set;
+	global.Set = polyfill;
+	a(t(), true);
+	if (cache === undefined) delete global.Set;
+	else global.Set = cache;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/is-native-implemented.js b/kbase-extension/static/ext_packages/igv/es6-set/test/is-native-implemented.js
new file mode 100644
index 0000000000..df8ba0323f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/is-native-implemented.js
@@ -0,0 +1,3 @@
+'use strict';
+
+module.exports = function (t, a) { a(typeof t, 'boolean'); };
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/is-set.js b/kbase-extension/static/ext_packages/igv/es6-set/test/is-set.js
new file mode 100644
index 0000000000..c969cce232
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/is-set.js
@@ -0,0 +1,16 @@
+'use strict';
+
+var SetPoly = require('../polyfill');
+
+module.exports = function (t, a) {
+	a(t(undefined), false, "Undefined");
+	a(t(null), false, "Null");
+	a(t(true), false, "Primitive");
+	a(t('raz'), false, "String");
+	a(t({}), false, "Object");
+	a(t([]), false, "Array");
+	if (typeof Set !== 'undefined') {
+		a(t(new Set()), true, "Native");
+	}
+	a(t(new SetPoly()), true, "Polyfill");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/polyfill.js b/kbase-extension/static/ext_packages/igv/es6-set/test/polyfill.js
new file mode 100644
index 0000000000..94ae3e6e63
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/polyfill.js
@@ -0,0 +1,50 @@
+'use strict';
+
+var aFrom   = require('es5-ext/array/from')
+  , toArray = require('es5-ext/array/to-array');
+
+module.exports = function (T, a) {
+	var arr = ['raz', 'dwa', 'trzy'], set = new T(arr), x = {}, y = {}, i = 0;
+
+	a(set instanceof T, true, "Set");
+	a(set.size, 3, "Size");
+	a(set.has('raz'), true, "Has: true");
+	a(set.has(x), false, "Has: false");
+	a(set.add(x), set, "Add: return");
+	a(set.has(x), true, "Add");
+	a(set.size, 4, "Add: Size");
+	a(set.delete({}), false, "Delete: false");
+
+	arr.push(x);
+	set.forEach(function () {
+		a.deep(aFrom(arguments), [arr[i], arr[i], set],
+			"ForEach: Arguments:  #" + i);
+		a(this, y, "ForEach: Context: #" + i);
+		if (i === 0) {
+			a(set.delete('raz'), true, "Delete: true");
+			a(set.has('raz'), false, "Delete");
+			a(set.size, 3, "Delete: size");
+			set.add('cztery');
+			arr.push('cztery');
+		}
+		i++;
+	}, y);
+	arr.splice(0, 1);
+
+	a.deep(toArray(set.entries()), [['dwa', 'dwa'], ['trzy', 'trzy'], [x, x],
+		['cztery', 'cztery']], "Entries");
+	a.deep(toArray(set.keys()), ['dwa', 'trzy', x, 'cztery'], "Keys");
+	a.deep(toArray(set.values()), ['dwa', 'trzy', x, 'cztery'], "Values");
+	a.deep(toArray(set), ['dwa', 'trzy', x, 'cztery'], "Iterator");
+
+	set.clear();
+	a(set.size, 0, "Clear: size");
+	a(set.has('trzy'), false, "Clear: has");
+	a.deep(toArray(set), [], "Clear: Values");
+
+	a.h1("Empty initialization");
+	set = new T();
+	set.add('foo');
+	a(set.size, 1);
+	a(set.has('foo'), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/primitive/index.js b/kbase-extension/static/ext_packages/igv/es6-set/test/primitive/index.js
new file mode 100644
index 0000000000..88f9502fd9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/primitive/index.js
@@ -0,0 +1,50 @@
+'use strict';
+
+var aFrom       = require('es5-ext/array/from')
+  , getIterator = require('es6-iterator/get')
+  , toArray     = require('es5-ext/array/to-array');
+
+module.exports = function (T, a) {
+	var arr = ['raz', 'dwa', 'trzy'], set = new T(arr), x = 'other', y = 'other2'
+	  , i = 0, result = [];
+
+	a(set instanceof T, true, "Set");
+	a(set.size, 3, "Size");
+	a(set.has('raz'), true, "Has: true");
+	a(set.has(x), false, "Has: false");
+	a(set.add(x), set, "Add: return");
+	a(set.has(x), true, "Add");
+	a(set.size, 4, "Add: Size");
+	a(set.delete('else'), false, "Delete: false");
+	a(set.get('raz'), 'raz', "Get");
+
+	arr.push(x);
+	set.forEach(function () {
+		result.push(aFrom(arguments));
+		a(this, y, "ForEach: Context: #" + i);
+	}, y);
+
+	a.deep(result.sort(function (a, b) {
+		return a[0].localeCompare(b[0]);
+	}), arr.sort().map(function (val) { return [val, val, set]; }));
+
+	a.deep(toArray(set.entries()).sort(), [['dwa', 'dwa'], ['trzy', 'trzy'],
+		[x, x], ['raz', 'raz']].sort(), "Entries");
+	a.deep(toArray(set.keys()).sort(), ['dwa', 'trzy', x, 'raz'].sort(),
+		"Keys");
+	a.deep(toArray(set.values()).sort(), ['dwa', 'trzy', x, 'raz'].sort(),
+		"Values");
+	a.deep(toArray(getIterator(set)).sort(), ['dwa', 'trzy', x, 'raz'].sort(),
+		"Iterator");
+
+	set.clear();
+	a(set.size, 0, "Clear: size");
+	a(set.has('trzy'), false, "Clear: has");
+	a.deep(toArray(set.values()), [], "Clear: Values");
+
+	a.h1("Empty initialization");
+	set = new T();
+	set.add('foo');
+	a(set.size, 1);
+	a(set.has('foo'), true);
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/test/valid-set.js b/kbase-extension/static/ext_packages/igv/es6-set/test/valid-set.js
new file mode 100644
index 0000000000..8c71f5f8c7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/test/valid-set.js
@@ -0,0 +1,19 @@
+'use strict';
+
+var SetPoly = require('../polyfill');
+
+module.exports = function (t, a) {
+	var set;
+	a.throws(function () { t(undefined); }, TypeError, "Undefined");
+	a.throws(function () { t(null); }, TypeError, "Null");
+	a.throws(function () { t(true); }, TypeError, "Primitive");
+	a.throws(function () { t('raz'); }, TypeError, "String");
+	a.throws(function () { t({}); }, TypeError, "Object");
+	a.throws(function () { t([]); }, TypeError, "Array");
+	if (typeof Set !== 'undefined') {
+		set = new Set();
+		a(t(set), set, "Native");
+	}
+	set = new SetPoly();
+	a(t(set), set, "Polyfill");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-set/valid-set.js b/kbase-extension/static/ext_packages/igv/es6-set/valid-set.js
new file mode 100644
index 0000000000..9336fd355a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-set/valid-set.js
@@ -0,0 +1,8 @@
+'use strict';
+
+var isSet = require('./is-set');
+
+module.exports = function (x) {
+	if (!isSet(x)) throw new TypeError(x + " is not a Set");
+	return x;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/.lint b/kbase-extension/static/ext_packages/igv/es6-symbol/.lint
new file mode 100644
index 0000000000..df1e53cd5f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/.lint
@@ -0,0 +1,15 @@
+@root
+
+module
+
+tabs
+indent 2
+maxlen 100
+
+ass
+nomen
+plusplus
+newcap
+vars
+
+predef+ Symbol
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/.npmignore b/kbase-extension/static/ext_packages/igv/es6-symbol/.npmignore
new file mode 100644
index 0000000000..155e41f691
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/.npmignore
@@ -0,0 +1,4 @@
+.DS_Store
+/node_modules
+/npm-debug.log
+/.lintcache
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/.travis.yml b/kbase-extension/static/ext_packages/igv/es6-symbol/.travis.yml
new file mode 100644
index 0000000000..0b1f5e4ae3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/.travis.yml
@@ -0,0 +1,11 @@
+sudo: false # http://docs.travis-ci.com/user/workers/container-based-infrastructure/
+language: node_js
+node_js:
+  - 0.12
+  - v4
+  - v5
+  - v6
+
+notifications:
+  email:
+    - medikoo+es6-symbol@medikoo.com
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/CHANGES b/kbase-extension/static/ext_packages/igv/es6-symbol/CHANGES
new file mode 100644
index 0000000000..017d40915f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/CHANGES
@@ -0,0 +1,57 @@
+v3.1.1  --  2017.03.15
+* Improve documentation
+* Improve error messages
+* Update dependencies
+
+v3.1.0  --  2016.06.03
+* Fix internals of symbol detection
+* Ensure Symbol.prototype[Symbol.toPrimitive] in all cases returns primitive value
+  (fixes Node v6 support)
+* Create native symbols whenver possible
+
+v3.0.2  --  2015.12.12
+* Fix definition flow, so uneven state of Symbol implementation doesn't crash initialization of
+  polyfill. See #13
+
+v3.0.1  --  2015.10.22
+* Workaround for IE11 bug (reported in #12)
+
+v3.0.0  --  2015.10.02
+* Reuse native symbols (e.g. iterator, toStringTag etc.) in a polyfill if they're available
+  Otherwise polyfill symbols may not be recognized by other functions
+* Improve documentation
+
+v2.0.1  --  2015.01.28
+* Fix Symbol.prototype[Symbol.isPrimitive] implementation
+* Improve validation within Symbol.prototype.toString and
+  Symbol.prototype.valueOf
+
+v2.0.0  --  2015.01.28
+* Update up to changes in specification:
+  * Implement `for` and `keyFor`
+  * Remove `Symbol.create` and `Symbol.isRegExp`
+  * Add `Symbol.match`, `Symbol.replace`, `Symbol.search`, `Symbol.species` and
+    `Symbol.split`
+* Rename `validSymbol` to `validateSymbol`
+* Improve documentation
+* Remove dead test modules
+
+v1.0.0  --  2015.01.26
+* Fix enumerability for symbol properties set normally (e.g. obj[symbol] = value)
+* Introduce initialization via hidden constructor
+* Fix isSymbol handling of polyfill values when native Symbol is present
+* Fix spelling of LICENSE
+* Configure lint scripts
+
+v0.1.1  --  2014.10.07
+* Fix isImplemented, so it returns true in case of polyfill
+* Improve documentations
+
+v0.1.0  --  2014.04.28
+* Assure strictly npm dependencies
+* Update to use latest versions of dependencies
+* Fix implementation detection so it doesn't crash on `String(symbol)`
+* throw on `new Symbol()` (as decided by TC39)
+
+v0.0.0  --  2013.11.15
+* Initial (dev) version
\ No newline at end of file
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/LICENSE b/kbase-extension/static/ext_packages/igv/es6-symbol/LICENSE
new file mode 100644
index 0000000000..04724a3ab1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/LICENSE
@@ -0,0 +1,19 @@
+Copyright (C) 2013-2015 Mariusz Nowak (www.medikoo.com)
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/README.md b/kbase-extension/static/ext_packages/igv/es6-symbol/README.md
new file mode 100644
index 0000000000..fea99062ec
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/README.md
@@ -0,0 +1,71 @@
+# es6-symbol
+## ECMAScript 6 Symbol polyfill
+
+For more information about symbols see following links
+- [Symbols in ECMAScript 6 by Axel Rauschmayer](http://www.2ality.com/2014/12/es6-symbols.html)
+- [MDN Documentation](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Symbol)
+- [Specification](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-symbol-constructor)
+
+### Limitations
+
+Underneath it uses real string property names which can easily be retrieved, however accidental collision with other property names is unlikely.
+
+### Usage
+
+If you'd like to use native version when it exists and fallback to [ponyfill](https://ponyfill.com) if it doesn't, use *es6-symbol* as following:
+
+```javascript
+var Symbol = require('es6-symbol');
+```
+
+If you want to make sure your environment implements `Symbol` globally, do:
+
+```javascript
+require('es6-symbol/implement');
+```
+
+If you strictly want to use polyfill even if native `Symbol` exists (hard to find a good reason for that), do:
+
+```javascript
+var Symbol = require('es6-symbol/polyfill');
+```
+
+#### API
+
+Best is to refer to [specification](http://people.mozilla.org/~jorendorff/es6-draft.html#sec-symbol-objects). Still if you want quick look, follow examples:
+
+```javascript
+var Symbol = require('es6-symbol');
+
+var symbol = Symbol('My custom symbol');
+var x = {};
+
+x[symbol] = 'foo';
+console.log(x[symbol]); 'foo'
+
+// Detect iterable:
+var iterator, result;
+if (possiblyIterable[Symbol.iterator]) {
+  iterator = possiblyIterable[Symbol.iterator]();
+  result = iterator.next();
+  while(!result.done) {
+    console.log(result.value);
+    result = iterator.next();
+  }
+}
+```
+
+### Installation
+#### NPM
+
+In your project path:
+
+	$ npm install es6-symbol
+
+##### Browser
+
+To port it to Browser or any other (non CJS) environment, use your favorite CJS bundler. No favorite yet? Try: [Browserify](http://browserify.org/), [Webmake](https://github.com/medikoo/modules-webmake) or [Webpack](http://webpack.github.io/)
+
+## Tests [![Build Status](https://travis-ci.org/medikoo/es6-symbol.png)](https://travis-ci.org/medikoo/es6-symbol)
+
+	$ npm test
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/implement.js b/kbase-extension/static/ext_packages/igv/es6-symbol/implement.js
new file mode 100644
index 0000000000..153edacdbe
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/implement.js
@@ -0,0 +1,7 @@
+'use strict';
+
+if (!require('./is-implemented')()) {
+	Object.defineProperty(require('es5-ext/global'), 'Symbol',
+		{ value: require('./polyfill'), configurable: true, enumerable: false,
+			writable: true });
+}
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/index.js b/kbase-extension/static/ext_packages/igv/es6-symbol/index.js
new file mode 100644
index 0000000000..609f1faf55
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/index.js
@@ -0,0 +1,3 @@
+'use strict';
+
+module.exports = require('./is-implemented')() ? Symbol : require('./polyfill');
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/is-implemented.js b/kbase-extension/static/ext_packages/igv/es6-symbol/is-implemented.js
new file mode 100644
index 0000000000..93629d2f84
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/is-implemented.js
@@ -0,0 +1,17 @@
+'use strict';
+
+var validTypes = { object: true, symbol: true };
+
+module.exports = function () {
+	var symbol;
+	if (typeof Symbol !== 'function') return false;
+	symbol = Symbol('test symbol');
+	try { String(symbol); } catch (e) { return false; }
+
+	// Return 'true' also for polyfills
+	if (!validTypes[typeof Symbol.iterator]) return false;
+	if (!validTypes[typeof Symbol.toPrimitive]) return false;
+	if (!validTypes[typeof Symbol.toStringTag]) return false;
+
+	return true;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/is-native-implemented.js b/kbase-extension/static/ext_packages/igv/es6-symbol/is-native-implemented.js
new file mode 100644
index 0000000000..8676d0e8df
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/is-native-implemented.js
@@ -0,0 +1,5 @@
+// Exports true if environment provides native `Symbol` implementation
+
+'use strict';
+
+module.exports = typeof Symbol === 'function' && typeof Symbol() === 'symbol';
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/is-symbol.js b/kbase-extension/static/ext_packages/igv/es6-symbol/is-symbol.js
new file mode 100644
index 0000000000..074cb07fb5
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/is-symbol.js
@@ -0,0 +1,9 @@
+'use strict';
+
+module.exports = function (x) {
+	if (!x) return false;
+	if (typeof x === 'symbol') return true;
+	if (!x.constructor) return false;
+	if (x.constructor.name !== 'Symbol') return false;
+	return (x[x.constructor.toStringTag] === 'Symbol');
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/package.json b/kbase-extension/static/ext_packages/igv/es6-symbol/package.json
new file mode 100644
index 0000000000..13124d8240
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/package.json
@@ -0,0 +1,73 @@
+{
+  "_args": [
+    [
+      "es6-symbol@3.1.1",
+      "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components"
+    ]
+  ],
+  "_from": "es6-symbol@3.1.1",
+  "_id": "es6-symbol@3.1.1",
+  "_inBundle": false,
+  "_integrity": "sha1-vwDvT9q2uhtG7Le2KbTH7VcVzHc=",
+  "_location": "/es6-symbol",
+  "_phantomChildren": {},
+  "_requested": {
+    "type": "version",
+    "registry": true,
+    "raw": "es6-symbol@3.1.1",
+    "name": "es6-symbol",
+    "escapedName": "es6-symbol",
+    "rawSpec": "3.1.1",
+    "saveSpec": null,
+    "fetchSpec": "3.1.1"
+  },
+  "_requiredBy": [
+    "/es5-ext",
+    "/es6-iterator",
+    "/es6-set"
+  ],
+  "_resolved": "https://registry.npmjs.org/es6-symbol/-/es6-symbol-3.1.1.tgz",
+  "_spec": "3.1.1",
+  "_where": "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components",
+  "author": {
+    "name": "Mariusz Nowak",
+    "email": "medyk@medikoo.com",
+    "url": "http://www.medikoo.com/"
+  },
+  "bugs": {
+    "url": "https://github.com/medikoo/es6-symbol/issues"
+  },
+  "dependencies": {
+    "d": "1",
+    "es5-ext": "~0.10.14"
+  },
+  "description": "ECMAScript 6 Symbol polyfill",
+  "devDependencies": {
+    "tad": "~0.2.7",
+    "xlint": "~0.2.2",
+    "xlint-jslint-medikoo": "~0.1.4"
+  },
+  "homepage": "https://github.com/medikoo/es6-symbol#readme",
+  "keywords": [
+    "symbol",
+    "private",
+    "property",
+    "es6",
+    "ecmascript",
+    "harmony",
+    "ponyfill",
+    "polyfill"
+  ],
+  "license": "MIT",
+  "name": "es6-symbol",
+  "repository": {
+    "type": "git",
+    "url": "git://github.com/medikoo/es6-symbol.git"
+  },
+  "scripts": {
+    "lint": "node node_modules/xlint/bin/xlint --linter=node_modules/xlint-jslint-medikoo/index.js --no-cache --no-stream",
+    "lint-console": "node node_modules/xlint/bin/xlint --linter=node_modules/xlint-jslint-medikoo/index.js --watch",
+    "test": "node ./node_modules/tad/bin/tad"
+  },
+  "version": "3.1.1"
+}
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/polyfill.js b/kbase-extension/static/ext_packages/igv/es6-symbol/polyfill.js
new file mode 100644
index 0000000000..dca879a3e2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/polyfill.js
@@ -0,0 +1,118 @@
+// ES2015 Symbol polyfill for environments that do not (or partially) support it
+
+'use strict';
+
+var d              = require('d')
+  , validateSymbol = require('./validate-symbol')
+
+  , create = Object.create, defineProperties = Object.defineProperties
+  , defineProperty = Object.defineProperty, objPrototype = Object.prototype
+  , NativeSymbol, SymbolPolyfill, HiddenSymbol, globalSymbols = create(null)
+  , isNativeSafe;
+
+if (typeof Symbol === 'function') {
+	NativeSymbol = Symbol;
+	try {
+		String(NativeSymbol());
+		isNativeSafe = true;
+	} catch (ignore) {}
+}
+
+var generateName = (function () {
+	var created = create(null);
+	return function (desc) {
+		var postfix = 0, name, ie11BugWorkaround;
+		while (created[desc + (postfix || '')]) ++postfix;
+		desc += (postfix || '');
+		created[desc] = true;
+		name = '@@' + desc;
+		defineProperty(objPrototype, name, d.gs(null, function (value) {
+			// For IE11 issue see:
+			// https://connect.microsoft.com/IE/feedbackdetail/view/1928508/
+			//    ie11-broken-getters-on-dom-objects
+			// https://github.com/medikoo/es6-symbol/issues/12
+			if (ie11BugWorkaround) return;
+			ie11BugWorkaround = true;
+			defineProperty(this, name, d(value));
+			ie11BugWorkaround = false;
+		}));
+		return name;
+	};
+}());
+
+// Internal constructor (not one exposed) for creating Symbol instances.
+// This one is used to ensure that `someSymbol instanceof Symbol` always return false
+HiddenSymbol = function Symbol(description) {
+	if (this instanceof HiddenSymbol) throw new TypeError('Symbol is not a constructor');
+	return SymbolPolyfill(description);
+};
+
+// Exposed `Symbol` constructor
+// (returns instances of HiddenSymbol)
+module.exports = SymbolPolyfill = function Symbol(description) {
+	var symbol;
+	if (this instanceof Symbol) throw new TypeError('Symbol is not a constructor');
+	if (isNativeSafe) return NativeSymbol(description);
+	symbol = create(HiddenSymbol.prototype);
+	description = (description === undefined ? '' : String(description));
+	return defineProperties(symbol, {
+		__description__: d('', description),
+		__name__: d('', generateName(description))
+	});
+};
+defineProperties(SymbolPolyfill, {
+	for: d(function (key) {
+		if (globalSymbols[key]) return globalSymbols[key];
+		return (globalSymbols[key] = SymbolPolyfill(String(key)));
+	}),
+	keyFor: d(function (s) {
+		var key;
+		validateSymbol(s);
+		for (key in globalSymbols) if (globalSymbols[key] === s) return key;
+	}),
+
+	// To ensure proper interoperability with other native functions (e.g. Array.from)
+	// fallback to eventual native implementation of given symbol
+	hasInstance: d('', (NativeSymbol && NativeSymbol.hasInstance) || SymbolPolyfill('hasInstance')),
+	isConcatSpreadable: d('', (NativeSymbol && NativeSymbol.isConcatSpreadable) ||
+		SymbolPolyfill('isConcatSpreadable')),
+	iterator: d('', (NativeSymbol && NativeSymbol.iterator) || SymbolPolyfill('iterator')),
+	match: d('', (NativeSymbol && NativeSymbol.match) || SymbolPolyfill('match')),
+	replace: d('', (NativeSymbol && NativeSymbol.replace) || SymbolPolyfill('replace')),
+	search: d('', (NativeSymbol && NativeSymbol.search) || SymbolPolyfill('search')),
+	species: d('', (NativeSymbol && NativeSymbol.species) || SymbolPolyfill('species')),
+	split: d('', (NativeSymbol && NativeSymbol.split) || SymbolPolyfill('split')),
+	toPrimitive: d('', (NativeSymbol && NativeSymbol.toPrimitive) || SymbolPolyfill('toPrimitive')),
+	toStringTag: d('', (NativeSymbol && NativeSymbol.toStringTag) || SymbolPolyfill('toStringTag')),
+	unscopables: d('', (NativeSymbol && NativeSymbol.unscopables) || SymbolPolyfill('unscopables'))
+});
+
+// Internal tweaks for real symbol producer
+defineProperties(HiddenSymbol.prototype, {
+	constructor: d(SymbolPolyfill),
+	toString: d('', function () { return this.__name__; })
+});
+
+// Proper implementation of methods exposed on Symbol.prototype
+// They won't be accessible on produced symbol instances as they derive from HiddenSymbol.prototype
+defineProperties(SymbolPolyfill.prototype, {
+	toString: d(function () { return 'Symbol (' + validateSymbol(this).__description__ + ')'; }),
+	valueOf: d(function () { return validateSymbol(this); })
+});
+defineProperty(SymbolPolyfill.prototype, SymbolPolyfill.toPrimitive, d('', function () {
+	var symbol = validateSymbol(this);
+	if (typeof symbol === 'symbol') return symbol;
+	return symbol.toString();
+}));
+defineProperty(SymbolPolyfill.prototype, SymbolPolyfill.toStringTag, d('c', 'Symbol'));
+
+// Proper implementaton of toPrimitive and toStringTag for returned symbol instances
+defineProperty(HiddenSymbol.prototype, SymbolPolyfill.toStringTag,
+	d('c', SymbolPolyfill.prototype[SymbolPolyfill.toStringTag]));
+
+// Note: It's important to define `toPrimitive` as last one, as some implementations
+// implement `toPrimitive` natively without implementing `toStringTag` (or other specified symbols)
+// And that may invoke error in definition flow:
+// See: https://github.com/medikoo/es6-symbol/issues/13#issuecomment-164146149
+defineProperty(HiddenSymbol.prototype, SymbolPolyfill.toPrimitive,
+	d('c', SymbolPolyfill.prototype[SymbolPolyfill.toPrimitive]));
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/test/implement.js b/kbase-extension/static/ext_packages/igv/es6-symbol/test/implement.js
new file mode 100644
index 0000000000..eb35c30188
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/test/implement.js
@@ -0,0 +1,3 @@
+'use strict';
+
+module.exports = function (t, a) { a(typeof Symbol, 'function'); };
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/test/index.js b/kbase-extension/static/ext_packages/igv/es6-symbol/test/index.js
new file mode 100644
index 0000000000..62b3296df6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/test/index.js
@@ -0,0 +1,12 @@
+'use strict';
+
+var d = require('d')
+
+  , defineProperty = Object.defineProperty;
+
+module.exports = function (T, a) {
+	var symbol = T('test'), x = {};
+	defineProperty(x, symbol, d('foo'));
+	a(x.test, undefined, "Name");
+	a(x[symbol], 'foo', "Get");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/test/is-implemented.js b/kbase-extension/static/ext_packages/igv/es6-symbol/test/is-implemented.js
new file mode 100644
index 0000000000..bb0d64536e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/test/is-implemented.js
@@ -0,0 +1,14 @@
+'use strict';
+
+var global   = require('es5-ext/global')
+  , polyfill = require('../polyfill');
+
+module.exports = function (t, a) {
+	var cache;
+	a(typeof t(), 'boolean');
+	cache = global.Symbol;
+	global.Symbol = polyfill;
+	a(t(), true);
+	if (cache === undefined) delete global.Symbol;
+	else global.Symbol = cache;
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/test/is-native-implemented.js b/kbase-extension/static/ext_packages/igv/es6-symbol/test/is-native-implemented.js
new file mode 100644
index 0000000000..df8ba0323f
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/test/is-native-implemented.js
@@ -0,0 +1,3 @@
+'use strict';
+
+module.exports = function (t, a) { a(typeof t, 'boolean'); };
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/test/is-symbol.js b/kbase-extension/static/ext_packages/igv/es6-symbol/test/is-symbol.js
new file mode 100644
index 0000000000..ac24b9abbf
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/test/is-symbol.js
@@ -0,0 +1,16 @@
+'use strict';
+
+var SymbolPoly = require('../polyfill');
+
+module.exports = function (t, a) {
+	a(t(undefined), false, "Undefined");
+	a(t(null), false, "Null");
+	a(t(true), false, "Primitive");
+	a(t('raz'), false, "String");
+	a(t({}), false, "Object");
+	a(t([]), false, "Array");
+	if (typeof Symbol !== 'undefined') {
+		a(t(Symbol()), true, "Native");
+	}
+	a(t(SymbolPoly()), true, "Polyfill");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/test/polyfill.js b/kbase-extension/static/ext_packages/igv/es6-symbol/test/polyfill.js
new file mode 100644
index 0000000000..8b657905de
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/test/polyfill.js
@@ -0,0 +1,29 @@
+'use strict';
+
+var d        = require('d')
+  , isSymbol = require('../is-symbol')
+
+  , defineProperty = Object.defineProperty;
+
+module.exports = function (T, a) {
+	var symbol = T('test'), x = {};
+	defineProperty(x, symbol, d('foo'));
+	a(x.test, undefined, "Name");
+	a(x[symbol], 'foo', "Get");
+	a(x instanceof T, false);
+
+	a(isSymbol(symbol), true, "Symbol");
+	a(isSymbol(T.iterator), true, "iterator");
+	a(isSymbol(T.toStringTag), true, "toStringTag");
+
+	x = {};
+	x[symbol] = 'foo';
+	if (typeof symbol !== 'symbol') {
+		a.deep(Object.getOwnPropertyDescriptor(x, symbol), { configurable: true, enumerable: false,
+			value: 'foo', writable: true });
+	}
+	symbol = T.for('marko');
+	a(isSymbol(symbol), true);
+	a(T.for('marko'), symbol);
+	a(T.keyFor(symbol), 'marko');
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/test/validate-symbol.js b/kbase-extension/static/ext_packages/igv/es6-symbol/test/validate-symbol.js
new file mode 100644
index 0000000000..2c8f84c823
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/test/validate-symbol.js
@@ -0,0 +1,19 @@
+'use strict';
+
+var SymbolPoly = require('../polyfill');
+
+module.exports = function (t, a) {
+	var symbol;
+	a.throws(function () { t(undefined); }, TypeError, "Undefined");
+	a.throws(function () { t(null); }, TypeError, "Null");
+	a.throws(function () { t(true); }, TypeError, "Primitive");
+	a.throws(function () { t('raz'); }, TypeError, "String");
+	a.throws(function () { t({}); }, TypeError, "Object");
+	a.throws(function () { t([]); }, TypeError, "Array");
+	if (typeof Symbol !== 'undefined') {
+		symbol = Symbol();
+		a(t(symbol), symbol, "Native");
+	}
+	symbol = SymbolPoly();
+	a(t(symbol), symbol, "Polyfill");
+};
diff --git a/kbase-extension/static/ext_packages/igv/es6-symbol/validate-symbol.js b/kbase-extension/static/ext_packages/igv/es6-symbol/validate-symbol.js
new file mode 100644
index 0000000000..42750043d4
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/es6-symbol/validate-symbol.js
@@ -0,0 +1,8 @@
+'use strict';
+
+var isSymbol = require('./is-symbol');
+
+module.exports = function (value) {
+	if (!isSymbol(value)) throw new TypeError(value + " is not a symbol");
+	return value;
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/.lint b/kbase-extension/static/ext_packages/igv/event-emitter/.lint
new file mode 100644
index 0000000000..f76e528ef6
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/.lint
@@ -0,0 +1,15 @@
+@root
+
+module
+es5
+
+indent 2
+maxlen 80
+tabs
+
+ass
+plusplus
+nomen
+
+./benchmark
+predef+ console
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/.npmignore b/kbase-extension/static/ext_packages/igv/event-emitter/.npmignore
new file mode 100644
index 0000000000..68ebfddd24
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/.npmignore
@@ -0,0 +1,3 @@
+.DS_Store
+/.lintcache
+/node_modules
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/.testignore b/kbase-extension/static/ext_packages/igv/event-emitter/.testignore
new file mode 100644
index 0000000000..f9c8c381d1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/.testignore
@@ -0,0 +1 @@
+/benchmark
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/.travis.yml b/kbase-extension/static/ext_packages/igv/event-emitter/.travis.yml
new file mode 100644
index 0000000000..5f29034c65
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/.travis.yml
@@ -0,0 +1,16 @@
+sudo: false # http://docs.travis-ci.com/user/workers/container-based-infrastructure/
+language: node_js
+node_js:
+  - 0.12
+  - 4
+  - 6
+  - 7
+
+before_install:
+  - mkdir node_modules; ln -s ../ node_modules/event-emitter
+
+notifications:
+  email:
+    - medikoo+event-emitter@medikoo.com
+
+script: "npm test && npm run lint"
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/CHANGES b/kbase-extension/static/ext_packages/igv/event-emitter/CHANGES
new file mode 100644
index 0000000000..3ac46ce831
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/CHANGES
@@ -0,0 +1,73 @@
+v0.3.5  --  2017.03.15
+* Improve documentation
+* Update dependencies
+
+v0.3.4  --  2015.10.02
+* Add `emitError` extension
+
+v0.3.3  --  2015.01.30
+* Fix reference to module in benchmarks
+
+v0.3.2  --  2015.01.20
+* Improve documentation
+* Configure lint scripts
+* Fix spelling of LICENSE
+
+v0.3.1  --  2014.04.25
+* Fix redefinition of emit method in `pipe`
+* Allow custom emit method name in `pipe`
+
+v0.3.0  --  2014.04.24
+* Move out from lib folder
+* Do not expose all utilities on main module
+* Support objects which do not inherit from Object.prototype
+* Improve arguments validation
+* Improve internals
+* Remove Makefile
+* Improve documentation
+
+v0.2.2  --  2013.06.05
+* `unify` functionality
+
+v0.2.1  --  2012.09.21
+* hasListeners module
+* Simplified internal id (improves performance a little), now it starts with
+  underscore (hint it's private). Abstracted it to external module to have it
+  one place
+* Documentation cleanup
+
+v0.2.0  --  2012.09.19
+* Trashed poor implementation of v0.1 and came up with something solid
+
+Changes:
+* Improved performance
+* Fixed bugs event-emitter is now cross-prototype safe and not affected by
+  unexpected methods attached to Object.prototype
+* Removed support for optional "emitter" argument in `emit` method, it was
+  cumbersome to use, and should be solved just with event objects
+
+v0.1.5  --  2012.08.06
+* (maintanance) Do not use descriptors for internal objects, it exposes V8 bugs
+  (only Node v0.6 branch)
+
+v0.1.4  --  2012.06.13
+* Fix detachment of listeners added with 'once'
+
+v0.1.3  --  2012.05.28
+* Updated es5-ext to latest version (v0.8)
+* Cleared package.json so it's in npm friendly format
+
+v0.1.2  --  2012.01.22
+* Support for emitter argument in emit function, this allows some listeners not
+  to be notified about event
+* allOff - removes all listeners from object
+* All methods returns self object
+* Internal fixes
+* Travis CI integration
+
+v0.1.1  --  2011.08.08
+* Added TAD test suite to devDependencies, configured test commands.
+  Tests can be run with 'make test' or 'npm test'
+
+v0.1.0  --  2011.08.08
+Initial version
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/LICENSE b/kbase-extension/static/ext_packages/igv/event-emitter/LICENSE
new file mode 100644
index 0000000000..ccb76f6e9a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/LICENSE
@@ -0,0 +1,19 @@
+Copyright (C) 2012-2015 Mariusz Nowak (www.medikoo.com)
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/README.md b/kbase-extension/static/ext_packages/igv/event-emitter/README.md
new file mode 100644
index 0000000000..0499054296
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/README.md
@@ -0,0 +1,98 @@
+# event-emitter
+## Environment agnostic event emitter
+
+### Installation
+
+	$ npm install event-emitter
+
+To port it to Browser or any other (non CJS) environment, use your favorite CJS bundler. No favorite yet? Try: [Browserify](http://browserify.org/), [Webmake](https://github.com/medikoo/modules-webmake) or [Webpack](http://webpack.github.io/)
+
+### Usage
+
+```javascript
+var ee = require('event-emitter');
+
+var MyClass = function () { /* .. */ };
+ee(MyClass.prototype); // All instances of MyClass will expose event-emitter interface
+
+var emitter = new MyClass(), listener;
+
+emitter.on('test', listener = function (args) {
+  // … react to 'test' event
+});
+
+emitter.once('test', function (args) {
+  // … react to first 'test' event (invoked only once!)
+});
+
+emitter.emit('test', arg1, arg2/*…args*/); // Two above listeners invoked
+emitter.emit('test', arg1, arg2/*…args*/); // Only first listener invoked
+
+emitter.off('test', listener);              // Removed first listener
+emitter.emit('test', arg1, arg2/*…args*/); // No listeners invoked
+```
+### Additional utilities
+
+#### allOff(obj) _(event-emitter/all-off)_
+
+Removes all listeners from given event emitter object
+
+#### hasListeners(obj[, name]) _(event-emitter/has-listeners)_
+
+Whether object has some listeners attached to the object.
+When `name` is provided, it checks listeners for specific event name
+
+```javascript
+var emitter = ee();
+var hasListeners = require('event-emitter/has-listeners');
+var listener = function () {};
+
+hasListeners(emitter); // false
+
+emitter.on('foo', listener);
+hasListeners(emitter); // true
+hasListeners(emitter, 'foo'); // true
+hasListeners(emitter, 'bar'); // false
+
+emitter.off('foo', listener);
+hasListeners(emitter, 'foo'); // false
+```
+
+#### pipe(source, target[, emitMethodName]) _(event-emitter/pipe)_
+
+Pipes all events from _source_ emitter onto _target_ emitter (all events from _source_ emitter will be emitted also on _target_ emitter, but not other way).  
+Returns _pipe_ object which exposes `pipe.close` function. Invoke it to close configured _pipe_.  
+It works internally by redefinition of `emit` method, if in your interface this method is referenced differently, provide its name (or symbol) with third argument.
+
+#### unify(emitter1, emitter2) _(event-emitter/unify)_
+
+Unifies event handling for two objects. Events emitted on _emitter1_ would be also emitted on _emitter2_, and other way back.  
+Non reversible.
+
+```javascript
+var eeUnify = require('event-emitter/unify');
+
+var emitter1 = ee(), listener1, listener3;
+var emitter2 = ee(), listener2, listener4;
+
+emitter1.on('test', listener1 = function () { });
+emitter2.on('test', listener2 = function () { });
+
+emitter1.emit('test'); // Invoked listener1
+emitter2.emit('test'); // Invoked listener2
+
+var unify = eeUnify(emitter1, emitter2);
+
+emitter1.emit('test'); // Invoked listener1 and listener2
+emitter2.emit('test'); // Invoked listener1 and listener2
+
+emitter1.on('test', listener3 = function () { });
+emitter2.on('test', listener4 = function () { });
+
+emitter1.emit('test'); // Invoked listener1, listener2, listener3 and listener4
+emitter2.emit('test'); // Invoked listener1, listener2, listener3 and listener4
+```
+
+### Tests [![Build Status](https://travis-ci.org/medikoo/event-emitter.png)](https://travis-ci.org/medikoo/event-emitter)
+
+	$ npm test
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/all-off.js b/kbase-extension/static/ext_packages/igv/event-emitter/all-off.js
new file mode 100644
index 0000000000..829be65c22
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/all-off.js
@@ -0,0 +1,19 @@
+'use strict';
+
+var value = require('es5-ext/object/valid-object')
+
+  , hasOwnProperty = Object.prototype.hasOwnProperty;
+
+module.exports = function (emitter/*, type*/) {
+	var type = arguments[1], data;
+
+	value(emitter);
+
+	if (type !== undefined) {
+		data = hasOwnProperty.call(emitter, '__ee__') && emitter.__ee__;
+		if (!data) return;
+		if (data[type]) delete data[type];
+		return;
+	}
+	if (hasOwnProperty.call(emitter, '__ee__')) delete emitter.__ee__;
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/benchmark/many-on.js b/kbase-extension/static/ext_packages/igv/event-emitter/benchmark/many-on.js
new file mode 100644
index 0000000000..e09bfde848
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/benchmark/many-on.js
@@ -0,0 +1,83 @@
+'use strict';
+
+// Benchmark comparing performance of event emit for many listeners
+// To run it, do following in memoizee package path:
+//
+// $ npm install eventemitter2 signals
+// $ node benchmark/many-on.js
+
+var forEach    = require('es5-ext/object/for-each')
+  , pad        = require('es5-ext/string/#/pad')
+
+  , now = Date.now
+
+  , time, count = 1000000, i, data = {}
+  , ee, native, ee2, signals, a = {}, b = {};
+
+ee = (function () {
+	var ee = require('../')();
+	ee.on('test', function () { return arguments; });
+	ee.on('test', function () { return arguments; });
+	return ee.on('test', function () { return arguments; });
+}());
+
+native = (function () {
+	var ee = require('events');
+	ee = new ee.EventEmitter();
+	ee.on('test', function () { return arguments; });
+	ee.on('test', function () { return arguments; });
+	return ee.on('test', function () { return arguments; });
+}());
+
+ee2 = (function () {
+	var ee = require('eventemitter2');
+	ee = new ee.EventEmitter2();
+	ee.on('test', function () { return arguments; });
+	ee.on('test', function () { return arguments; });
+	return ee.on('test', function () { return arguments; });
+}());
+
+signals = (function () {
+	var Signal = require('signals')
+	  , ee = { test: new Signal() };
+	ee.test.add(function () { return arguments; });
+	ee.test.add(function () { return arguments; });
+	ee.test.add(function () { return arguments; });
+	return ee;
+}());
+
+console.log("Emit for 3 listeners", "x" + count + ":\n");
+
+i = count;
+time = now();
+while (i--) {
+	ee.emit('test', a, b);
+}
+data["event-emitter (this implementation)"] = now() - time;
+
+i = count;
+time = now();
+while (i--) {
+	native.emit('test', a, b);
+}
+data["EventEmitter (Node.js native)"] = now() - time;
+
+i = count;
+time = now();
+while (i--) {
+	ee2.emit('test', a, b);
+}
+data.EventEmitter2 = now() - time;
+
+i = count;
+time = now();
+while (i--) {
+	signals.test.dispatch(a, b);
+}
+data.Signals = now() - time;
+
+forEach(data, function (value, name, obj, index) {
+	console.log(index + 1 + ":",  pad.call(value, " ", 5), name);
+}, null, function (a, b) {
+	return this[a] - this[b];
+});
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/benchmark/single-on.js b/kbase-extension/static/ext_packages/igv/event-emitter/benchmark/single-on.js
new file mode 100644
index 0000000000..99decbdae7
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/benchmark/single-on.js
@@ -0,0 +1,73 @@
+'use strict';
+
+// Benchmark comparing performance of event emit for single listener
+// To run it, do following in memoizee package path:
+//
+// $ npm install eventemitter2 signals
+// $ node benchmark/single-on.js
+
+var forEach    = require('es5-ext/object/for-each')
+  , pad        = require('es5-ext/string/#/pad')
+
+  , now = Date.now
+
+  , time, count = 1000000, i, data = {}
+  , ee, native, ee2, signals, a = {}, b = {};
+
+ee = (function () {
+	var ee = require('../');
+	return ee().on('test', function () { return arguments; });
+}());
+
+native = (function () {
+	var ee = require('events');
+	return (new ee.EventEmitter()).on('test', function () { return arguments; });
+}());
+
+ee2 = (function () {
+	var ee = require('eventemitter2');
+	return (new ee.EventEmitter2()).on('test', function () { return arguments; });
+}());
+
+signals = (function () {
+	var Signal = require('signals')
+	  , ee = { test: new Signal() };
+	ee.test.add(function () { return arguments; });
+	return ee;
+}());
+
+console.log("Emit for single listener", "x" + count + ":\n");
+
+i = count;
+time = now();
+while (i--) {
+	ee.emit('test', a, b);
+}
+data["event-emitter (this implementation)"] = now() - time;
+
+i = count;
+time = now();
+while (i--) {
+	native.emit('test', a, b);
+}
+data["EventEmitter (Node.js native)"] = now() - time;
+
+i = count;
+time = now();
+while (i--) {
+	ee2.emit('test', a, b);
+}
+data.EventEmitter2 = now() - time;
+
+i = count;
+time = now();
+while (i--) {
+	signals.test.dispatch(a, b);
+}
+data.Signals = now() - time;
+
+forEach(data, function (value, name, obj, index) {
+	console.log(index + 1 + ":",  pad.call(value, " ", 5), name);
+}, null, function (a, b) {
+	return this[a] - this[b];
+});
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/emit-error.js b/kbase-extension/static/ext_packages/igv/event-emitter/emit-error.js
new file mode 100644
index 0000000000..769b4c53e1
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/emit-error.js
@@ -0,0 +1,13 @@
+'use strict';
+
+var ensureError  = require('es5-ext/error/valid-error')
+  , ensureObject = require('es5-ext/object/valid-object')
+
+  , hasOwnProperty = Object.prototype.hasOwnProperty;
+
+module.exports = function (err) {
+	(ensureObject(this) && ensureError(err));
+	if (!hasOwnProperty.call(ensureObject(this), '__ee__')) throw err;
+	if (!this.__ee__.error) throw err;
+	this.emit('error', err);
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/has-listeners.js b/kbase-extension/static/ext_packages/igv/event-emitter/has-listeners.js
new file mode 100644
index 0000000000..8744522e28
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/has-listeners.js
@@ -0,0 +1,16 @@
+'use strict';
+
+var isEmpty = require('es5-ext/object/is-empty')
+  , value   = require('es5-ext/object/valid-value')
+
+  , hasOwnProperty = Object.prototype.hasOwnProperty;
+
+module.exports = function (obj/*, type*/) {
+	var type;
+	value(obj);
+	type = arguments[1];
+	if (arguments.length > 1) {
+		return hasOwnProperty.call(obj, '__ee__') && Boolean(obj.__ee__[type]);
+	}
+	return obj.hasOwnProperty('__ee__') && !isEmpty(obj.__ee__);
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/index.js b/kbase-extension/static/ext_packages/igv/event-emitter/index.js
new file mode 100644
index 0000000000..c36d3e49a2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/index.js
@@ -0,0 +1,132 @@
+'use strict';
+
+var d        = require('d')
+  , callable = require('es5-ext/object/valid-callable')
+
+  , apply = Function.prototype.apply, call = Function.prototype.call
+  , create = Object.create, defineProperty = Object.defineProperty
+  , defineProperties = Object.defineProperties
+  , hasOwnProperty = Object.prototype.hasOwnProperty
+  , descriptor = { configurable: true, enumerable: false, writable: true }
+
+  , on, once, off, emit, methods, descriptors, base;
+
+on = function (type, listener) {
+	var data;
+
+	callable(listener);
+
+	if (!hasOwnProperty.call(this, '__ee__')) {
+		data = descriptor.value = create(null);
+		defineProperty(this, '__ee__', descriptor);
+		descriptor.value = null;
+	} else {
+		data = this.__ee__;
+	}
+	if (!data[type]) data[type] = listener;
+	else if (typeof data[type] === 'object') data[type].push(listener);
+	else data[type] = [data[type], listener];
+
+	return this;
+};
+
+once = function (type, listener) {
+	var once, self;
+
+	callable(listener);
+	self = this;
+	on.call(this, type, once = function () {
+		off.call(self, type, once);
+		apply.call(listener, this, arguments);
+	});
+
+	once.__eeOnceListener__ = listener;
+	return this;
+};
+
+off = function (type, listener) {
+	var data, listeners, candidate, i;
+
+	callable(listener);
+
+	if (!hasOwnProperty.call(this, '__ee__')) return this;
+	data = this.__ee__;
+	if (!data[type]) return this;
+	listeners = data[type];
+
+	if (typeof listeners === 'object') {
+		for (i = 0; (candidate = listeners[i]); ++i) {
+			if ((candidate === listener) ||
+					(candidate.__eeOnceListener__ === listener)) {
+				if (listeners.length === 2) data[type] = listeners[i ? 0 : 1];
+				else listeners.splice(i, 1);
+			}
+		}
+	} else {
+		if ((listeners === listener) ||
+				(listeners.__eeOnceListener__ === listener)) {
+			delete data[type];
+		}
+	}
+
+	return this;
+};
+
+emit = function (type) {
+	var i, l, listener, listeners, args;
+
+	if (!hasOwnProperty.call(this, '__ee__')) return;
+	listeners = this.__ee__[type];
+	if (!listeners) return;
+
+	if (typeof listeners === 'object') {
+		l = arguments.length;
+		args = new Array(l - 1);
+		for (i = 1; i < l; ++i) args[i - 1] = arguments[i];
+
+		listeners = listeners.slice();
+		for (i = 0; (listener = listeners[i]); ++i) {
+			apply.call(listener, this, args);
+		}
+	} else {
+		switch (arguments.length) {
+		case 1:
+			call.call(listeners, this);
+			break;
+		case 2:
+			call.call(listeners, this, arguments[1]);
+			break;
+		case 3:
+			call.call(listeners, this, arguments[1], arguments[2]);
+			break;
+		default:
+			l = arguments.length;
+			args = new Array(l - 1);
+			for (i = 1; i < l; ++i) {
+				args[i - 1] = arguments[i];
+			}
+			apply.call(listeners, this, args);
+		}
+	}
+};
+
+methods = {
+	on: on,
+	once: once,
+	off: off,
+	emit: emit
+};
+
+descriptors = {
+	on: d(on),
+	once: d(once),
+	off: d(off),
+	emit: d(emit)
+};
+
+base = defineProperties({}, descriptors);
+
+module.exports = exports = function (o) {
+	return (o == null) ? create(base) : defineProperties(Object(o), descriptors);
+};
+exports.methods = methods;
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/package.json b/kbase-extension/static/ext_packages/igv/event-emitter/package.json
new file mode 100644
index 0000000000..3cb25d5a10
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/package.json
@@ -0,0 +1,70 @@
+{
+  "_args": [
+    [
+      "event-emitter@0.3.5",
+      "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components"
+    ]
+  ],
+  "_from": "event-emitter@0.3.5",
+  "_id": "event-emitter@0.3.5",
+  "_inBundle": false,
+  "_integrity": "sha1-34xp7vFkeSPHFXuc6DhAYQsCzDk=",
+  "_location": "/event-emitter",
+  "_phantomChildren": {},
+  "_requested": {
+    "type": "version",
+    "registry": true,
+    "raw": "event-emitter@0.3.5",
+    "name": "event-emitter",
+    "escapedName": "event-emitter",
+    "rawSpec": "0.3.5",
+    "saveSpec": null,
+    "fetchSpec": "0.3.5"
+  },
+  "_requiredBy": [
+    "/es6-set"
+  ],
+  "_resolved": "https://registry.npmjs.org/event-emitter/-/event-emitter-0.3.5.tgz",
+  "_spec": "0.3.5",
+  "_where": "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components",
+  "author": {
+    "name": "Mariusz Nowak",
+    "email": "medyk@medikoo.com",
+    "url": "http://www.medikoo.com/"
+  },
+  "bugs": {
+    "url": "https://github.com/medikoo/event-emitter/issues"
+  },
+  "dependencies": {
+    "d": "1",
+    "es5-ext": "~0.10.14"
+  },
+  "description": "Environment agnostic event emitter",
+  "devDependencies": {
+    "tad": "~0.2.7",
+    "xlint": "~0.2.2",
+    "xlint-jslint-medikoo": "~0.1.4"
+  },
+  "homepage": "https://github.com/medikoo/event-emitter#readme",
+  "keywords": [
+    "event",
+    "events",
+    "trigger",
+    "observer",
+    "listener",
+    "emitter",
+    "pubsub"
+  ],
+  "license": "MIT",
+  "name": "event-emitter",
+  "repository": {
+    "type": "git",
+    "url": "git://github.com/medikoo/event-emitter.git"
+  },
+  "scripts": {
+    "lint": "node node_modules/xlint/bin/xlint --linter=node_modules/xlint-jslint-medikoo/index.js --no-cache --no-stream",
+    "lint-console": "node node_modules/xlint/bin/xlint --linter=node_modules/xlint-jslint-medikoo/index.js --watch",
+    "test": "node ./node_modules/tad/bin/tad"
+  },
+  "version": "0.3.5"
+}
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/pipe.js b/kbase-extension/static/ext_packages/igv/event-emitter/pipe.js
new file mode 100644
index 0000000000..0088efefa2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/pipe.js
@@ -0,0 +1,42 @@
+'use strict';
+
+var aFrom          = require('es5-ext/array/from')
+  , remove         = require('es5-ext/array/#/remove')
+  , value          = require('es5-ext/object/valid-object')
+  , d              = require('d')
+  , emit           = require('./').methods.emit
+
+  , defineProperty = Object.defineProperty
+  , hasOwnProperty = Object.prototype.hasOwnProperty
+  , getOwnPropertyDescriptor = Object.getOwnPropertyDescriptor;
+
+module.exports = function (e1, e2/*, name*/) {
+	var pipes, pipe, desc, name;
+
+	(value(e1) && value(e2));
+	name = arguments[2];
+	if (name === undefined) name = 'emit';
+
+	pipe = {
+		close: function () { remove.call(pipes, e2); }
+	};
+	if (hasOwnProperty.call(e1, '__eePipes__')) {
+		(pipes = e1.__eePipes__).push(e2);
+		return pipe;
+	}
+	defineProperty(e1, '__eePipes__', d('c', pipes = [e2]));
+	desc = getOwnPropertyDescriptor(e1, name);
+	if (!desc) {
+		desc = d('c', undefined);
+	} else {
+		delete desc.get;
+		delete desc.set;
+	}
+	desc.value = function () {
+		var i, emitter, data = aFrom(pipes);
+		emit.apply(this, arguments);
+		for (i = 0; (emitter = data[i]); ++i) emit.apply(emitter, arguments);
+	};
+	defineProperty(e1, name, desc);
+	return pipe;
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/test/all-off.js b/kbase-extension/static/ext_packages/igv/event-emitter/test/all-off.js
new file mode 100644
index 0000000000..8aa872e9c9
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/test/all-off.js
@@ -0,0 +1,48 @@
+'use strict';
+
+var ee = require('../');
+
+module.exports = function (t, a) {
+	var x, count, count2;
+
+	x = ee();
+	count = 0;
+	count2 = 0;
+	x.on('foo', function () {
+		++count;
+	});
+	x.on('foo', function () {
+		++count;
+	});
+	x.on('bar', function () {
+		++count2;
+	});
+	x.on('bar', function () {
+		++count2;
+	});
+	t(x, 'foo');
+	x.emit('foo');
+	x.emit('bar');
+	a(count, 0, "All off: type");
+	a(count2, 2, "All off: ohter type");
+
+	count = 0;
+	count2 = 0;
+	x.on('foo', function () {
+		++count;
+	});
+	x.on('foo', function () {
+		++count;
+	});
+	x.on('bar', function () {
+		++count2;
+	});
+	x.on('bar', function () {
+		++count2;
+	});
+	t(x);
+	x.emit('foo');
+	x.emit('bar');
+	a(count, 0, "All off: type");
+	a(count2, 0, "All off: other type");
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/test/emit-error.js b/kbase-extension/static/ext_packages/igv/event-emitter/test/emit-error.js
new file mode 100644
index 0000000000..edac350afb
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/test/emit-error.js
@@ -0,0 +1,14 @@
+'use strict';
+
+var customError = require('es5-ext/error/custom')
+  , ee          = require('../');
+
+module.exports = function (t, a) {
+	var x, error = customError('Some error', 'ERROR_TEST'), emitted;
+
+	x = ee();
+	a.throws(function () { t.call(x, error); }, 'ERROR_TEST');
+	x.on('error', function (err) { emitted = err; });
+	t.call(x, error);
+	a(emitted, error);
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/test/has-listeners.js b/kbase-extension/static/ext_packages/igv/event-emitter/test/has-listeners.js
new file mode 100644
index 0000000000..875b048a41
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/test/has-listeners.js
@@ -0,0 +1,42 @@
+'use strict';
+
+var ee = require('../');
+
+module.exports = function (t) {
+	var x, y;
+	return {
+		Any: function (a) {
+			a(t(true), false, "Primitive");
+			a(t({ events: [] }), false, "Other object");
+			a(t(x = ee()), false, "Emitter: empty");
+
+			x.on('test', y = function () {});
+			a(t(x), true, "Emitter: full");
+			x.off('test', y);
+			a(t(x), false, "Emitter: empty but touched");
+			x.once('test', y = function () {});
+			a(t(x), true, "Emitter: full: Once");
+			x.off('test', y);
+			a(t(x), false, "Emitter: empty but touched by once");
+		},
+		Specific: function (a) {
+			a(t(true, 'test'), false, "Primitive");
+			a(t({ events: [] }, 'test'), false, "Other object");
+			a(t(x = ee(), 'test'), false, "Emitter: empty");
+
+			x.on('test', y = function () {});
+			a(t(x, 'test'), true, "Emitter: full");
+			a(t(x, 'foo'), false, "Emitter: full, other event");
+			x.off('test', y);
+			a(t(x, 'test'), false, "Emitter: empty but touched");
+			a(t(x, 'foo'), false, "Emitter: empty but touched, other event");
+
+			x.once('test', y = function () {});
+			a(t(x, 'test'), true, "Emitter: full: Once");
+			a(t(x, 'foo'), false, "Emitter: full: Once,  other event");
+			x.off('test', y);
+			a(t(x, 'test'), false, "Emitter: empty but touched by once");
+			a(t(x, 'foo'), false, "Emitter: empty but touched by once, other event");
+		}
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/test/index.js b/kbase-extension/static/ext_packages/igv/event-emitter/test/index.js
new file mode 100644
index 0000000000..c7c3f24c47
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/test/index.js
@@ -0,0 +1,107 @@
+'use strict';
+
+module.exports = function (t, a) {
+	var x = t(), y, count, count2, count3, count4, test, listener1, listener2;
+
+	x.emit('none');
+
+	test = "Once: ";
+	count = 0;
+	x.once('foo', function (a1, a2, a3) {
+		a(this, x, test + "Context");
+		a.deep([a1, a2, a3], ['foo', x, 15], test + "Arguments");
+		++count;
+	});
+
+	x.emit('foobar');
+	a(count, 0, test + "Not invoked on other event");
+	x.emit('foo', 'foo', x, 15);
+	a(count, 1, test + "Emitted");
+	x.emit('foo');
+	a(count, 1, test + "Emitted once");
+
+	test = "On & Once: ";
+	count = 0;
+	x.on('foo', listener1 = function (a1, a2, a3) {
+		a(this, x, test + "Context");
+		a.deep([a1, a2, a3], ['foo', x, 15], test + "Arguments");
+		++count;
+	});
+	count2 = 0;
+	x.once('foo', listener2 = function (a1, a2, a3) {
+		a(this, x, test + "Context");
+		a.deep([a1, a2, a3], ['foo', x, 15], test + "Arguments");
+		++count2;
+	});
+
+	x.emit('foobar');
+	a(count, 0, test + "Not invoked on other event");
+	x.emit('foo', 'foo', x, 15);
+	a(count, 1, test + "Emitted");
+	x.emit('foo', 'foo', x, 15);
+	a(count, 2, test + "Emitted twice");
+	a(count2, 1, test + "Emitted once");
+	x.off('foo', listener1);
+	x.emit('foo');
+	a(count, 2, test + "Not emitter after off");
+
+	count = 0;
+	x.once('foo', listener1 = function () { ++count; });
+
+	x.off('foo', listener1);
+	x.emit('foo');
+	a(count, 0, "Once Off: Not emitted");
+
+	count = 0;
+	x.on('foo', listener2 = function () {});
+	x.once('foo', listener1 = function () { ++count; });
+
+	x.off('foo', listener1);
+	x.emit('foo');
+	a(count, 0, "Once Off (multi): Not emitted");
+	x.off('foo', listener2);
+
+	test = "Prototype Share: ";
+
+	y = Object.create(x);
+
+	count = 0;
+	count2 = 0;
+	count3 = 0;
+	count4 = 0;
+	x.on('foo', function () {
+		++count;
+	});
+	y.on('foo', function () {
+		++count2;
+	});
+	x.once('foo', function () {
+		++count3;
+	});
+	y.once('foo', function () {
+		++count4;
+	});
+	x.emit('foo');
+	a(count, 1, test + "x on count");
+	a(count2, 0, test + "y on count");
+	a(count3, 1, test + "x once count");
+	a(count4, 0, test + "y once count");
+
+	y.emit('foo');
+	a(count, 1, test + "x on count");
+	a(count2, 1, test + "y on count");
+	a(count3, 1, test + "x once count");
+	a(count4, 1, test + "y once count");
+
+	x.emit('foo');
+	a(count, 2, test + "x on count");
+	a(count2, 1, test + "y on count");
+	a(count3, 1, test + "x once count");
+	a(count4, 1, test + "y once count");
+
+	y.emit('foo');
+	a(count, 2, test + "x on count");
+	a(count2, 2, test + "y on count");
+	a(count3, 1, test + "x once count");
+	a(count4, 1, test + "y once count");
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/test/pipe.js b/kbase-extension/static/ext_packages/igv/event-emitter/test/pipe.js
new file mode 100644
index 0000000000..9d15d6dae3
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/test/pipe.js
@@ -0,0 +1,53 @@
+'use strict';
+
+var ee = require('../');
+
+module.exports = function (t, a) {
+	var x = {}, y = {}, z = {}, count, count2, count3, pipe;
+
+	ee(x);
+	x = Object.create(x);
+	ee(y);
+	ee(z);
+
+	count = 0;
+	count2 = 0;
+	count3 = 0;
+	x.on('foo', function () {
+		++count;
+	});
+	y.on('foo', function () {
+		++count2;
+	});
+	z.on('foo', function () {
+		++count3;
+	});
+
+	x.emit('foo');
+	a(count, 1, "Pre pipe, x");
+	a(count2, 0, "Pre pipe, y");
+	a(count3, 0, "Pre pipe, z");
+
+	pipe = t(x, y);
+	x.emit('foo');
+	a(count, 2, "Post pipe, x");
+	a(count2, 1, "Post pipe, y");
+	a(count3, 0, "Post pipe, z");
+
+	y.emit('foo');
+	a(count, 2, "Post pipe, on y, x");
+	a(count2, 2, "Post pipe, on y, y");
+	a(count3, 0, "Post pipe, on y, z");
+
+	t(x, z);
+	x.emit('foo');
+	a(count, 3, "Post pipe z, x");
+	a(count2, 3, "Post pipe z, y");
+	a(count3, 1, "Post pipe z, z");
+
+	pipe.close();
+	x.emit('foo');
+	a(count, 4, "Close pipe y, x");
+	a(count2, 3, "Close pipe y, y");
+	a(count3, 2, "Close pipe y, z");
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/test/unify.js b/kbase-extension/static/ext_packages/igv/event-emitter/test/unify.js
new file mode 100644
index 0000000000..69295e0657
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/test/unify.js
@@ -0,0 +1,123 @@
+'use strict';
+
+var ee = require('../');
+
+module.exports = function (t) {
+
+	return {
+		"": function (a) {
+			var x = {}, y = {}, z = {}, count, count2, count3;
+
+			ee(x);
+			ee(y);
+			ee(z);
+
+			count = 0;
+			count2 = 0;
+			count3 = 0;
+			x.on('foo', function () { ++count; });
+			y.on('foo', function () { ++count2; });
+			z.on('foo', function () { ++count3; });
+
+			x.emit('foo');
+			a(count, 1, "Pre unify, x");
+			a(count2, 0, "Pre unify, y");
+			a(count3, 0, "Pre unify, z");
+
+			t(x, y);
+			a(x.__ee__, y.__ee__, "Post unify y");
+			x.emit('foo');
+			a(count, 2, "Post unify, x");
+			a(count2, 1, "Post unify, y");
+			a(count3, 0, "Post unify, z");
+
+			y.emit('foo');
+			a(count, 3, "Post unify, on y, x");
+			a(count2, 2, "Post unify, on y, y");
+			a(count3, 0, "Post unify, on y, z");
+
+			t(x, z);
+			a(x.__ee__, x.__ee__, "Post unify z");
+			x.emit('foo');
+			a(count, 4, "Post unify z, x");
+			a(count2, 3, "Post unify z, y");
+			a(count3, 1, "Post unify z, z");
+		},
+		"On empty": function (a) {
+			var x = {}, y = {}, z = {}, count, count2, count3;
+
+			ee(x);
+			ee(y);
+			ee(z);
+
+			count = 0;
+			count2 = 0;
+			count3 = 0;
+			y.on('foo', function () { ++count2; });
+			x.emit('foo');
+			a(count, 0, "Pre unify, x");
+			a(count2, 0, "Pre unify, y");
+			a(count3, 0, "Pre unify, z");
+
+			t(x, y);
+			a(x.__ee__, y.__ee__, "Post unify y");
+			x.on('foo', function () { ++count; });
+			x.emit('foo');
+			a(count, 1, "Post unify, x");
+			a(count2, 1, "Post unify, y");
+			a(count3, 0, "Post unify, z");
+
+			y.emit('foo');
+			a(count, 2, "Post unify, on y, x");
+			a(count2, 2, "Post unify, on y, y");
+			a(count3, 0, "Post unify, on y, z");
+
+			t(x, z);
+			a(x.__ee__, z.__ee__, "Post unify z");
+			z.on('foo', function () { ++count3; });
+			x.emit('foo');
+			a(count, 3, "Post unify z, x");
+			a(count2, 3, "Post unify z, y");
+			a(count3, 1, "Post unify z, z");
+		},
+		Many: function (a) {
+			var x = {}, y = {}, z = {}, count, count2, count3;
+
+			ee(x);
+			ee(y);
+			ee(z);
+
+			count = 0;
+			count2 = 0;
+			count3 = 0;
+			x.on('foo', function () { ++count; });
+			y.on('foo', function () { ++count2; });
+			y.on('foo', function () { ++count2; });
+			z.on('foo', function () { ++count3; });
+
+			x.emit('foo');
+			a(count, 1, "Pre unify, x");
+			a(count2, 0, "Pre unify, y");
+			a(count3, 0, "Pre unify, z");
+
+			t(x, y);
+			a(x.__ee__, y.__ee__, "Post unify y");
+			x.emit('foo');
+			a(count, 2, "Post unify, x");
+			a(count2, 2, "Post unify, y");
+			a(count3, 0, "Post unify, z");
+
+			y.emit('foo');
+			a(count, 3, "Post unify, on y, x");
+			a(count2, 4, "Post unify, on y, y");
+			a(count3, 0, "Post unify, on y, z");
+
+			t(x, z);
+			a(x.__ee__, x.__ee__, "Post unify z");
+			x.emit('foo');
+			a(count, 4, "Post unify z, x");
+			a(count2, 6, "Post unify z, y");
+			a(count3, 1, "Post unify z, z");
+		}
+	};
+};
diff --git a/kbase-extension/static/ext_packages/igv/event-emitter/unify.js b/kbase-extension/static/ext_packages/igv/event-emitter/unify.js
new file mode 100644
index 0000000000..c6a858a0be
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/event-emitter/unify.js
@@ -0,0 +1,50 @@
+'use strict';
+
+var forEach    = require('es5-ext/object/for-each')
+  , validValue = require('es5-ext/object/valid-object')
+
+  , push = Array.prototype.apply, defineProperty = Object.defineProperty
+  , create = Object.create, hasOwnProperty = Object.prototype.hasOwnProperty
+  , d = { configurable: true, enumerable: false, writable: true };
+
+module.exports = function (e1, e2) {
+	var data;
+	(validValue(e1) && validValue(e2));
+	if (!hasOwnProperty.call(e1, '__ee__')) {
+		if (!hasOwnProperty.call(e2, '__ee__')) {
+			d.value = create(null);
+			defineProperty(e1, '__ee__', d);
+			defineProperty(e2, '__ee__', d);
+			d.value = null;
+			return;
+		}
+		d.value = e2.__ee__;
+		defineProperty(e1, '__ee__', d);
+		d.value = null;
+		return;
+	}
+	data = d.value = e1.__ee__;
+	if (!hasOwnProperty.call(e2, '__ee__')) {
+		defineProperty(e2, '__ee__', d);
+		d.value = null;
+		return;
+	}
+	if (data === e2.__ee__) return;
+	forEach(e2.__ee__, function (listener, name) {
+		if (!data[name]) {
+			data[name] = listener;
+			return;
+		}
+		if (typeof data[name] === 'object') {
+			if (typeof listener === 'object') push.apply(data[name], listener);
+			else data[name].push(listener);
+		} else if (typeof listener === 'object') {
+			listener.unshift(data[name]);
+			data[name] = listener;
+		} else {
+			data[name] = [data[name], listener];
+		}
+	});
+	defineProperty(e2, '__ee__', d);
+	d.value = null;
+};
diff --git a/kbase-extension/static/ext_packages/igv/igv.js/.npmignore b/kbase-extension/static/ext_packages/igv/igv.js/.npmignore
new file mode 100644
index 0000000000..2ec421548b
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/igv.js/.npmignore
@@ -0,0 +1,63 @@
+# Logs
+logs
+*.log
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+
+# Runtime data
+pids
+*.pid
+*.seed
+*.pid.lock
+
+# Directory for instrumented libs generated by jscoverage/JSCover
+lib-cov
+
+# Coverage directory used by tools like istanbul
+coverage
+
+# nyc test coverage
+.nyc_output
+
+# Grunt intermediate storage (http://gruntjs.com/creating-plugins#storing-task-files)
+.grunt
+
+# Bower dependency directory (https://bower.io/)
+bower_components
+
+# node-waf configuration
+.lock-wscript
+
+# Compiled binary addons (http://nodejs.org/api/addons.html)
+build/Release
+
+# Dependency directories
+node_modules/
+jspm_packages/
+
+# Typescript v1 declaration files
+typings/
+
+# Optional npm cache directory
+.npm
+
+# Optional eslint cache
+.eslintcache
+
+# Optional REPL history
+.node_repl_history
+
+# Output of 'npm pack'
+*.tgz
+
+# Yarn Integrity file
+.yarn-integrity
+
+# dotenv environment variables file
+.env
+
+# idea
+.idea/
+
+*.js-npm.iml
diff --git a/kbase-extension/static/ext_packages/igv/igv.js/LICENSE b/kbase-extension/static/ext_packages/igv/igv.js/LICENSE
new file mode 100644
index 0000000000..8864d4a396
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/igv.js/LICENSE
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2017 
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
diff --git a/kbase-extension/static/ext_packages/igv/igv.js/README.md b/kbase-extension/static/ext_packages/igv/igv.js/README.md
new file mode 100644
index 0000000000..0d8d0d9ecc
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/igv.js/README.md
@@ -0,0 +1 @@
+# igv.js-npm
\ No newline at end of file
diff --git a/kbase-extension/static/ext_packages/igv/igv.js/igv.css b/kbase-extension/static/ext_packages/igv/igv.js/igv.css
new file mode 100644
index 0000000000..1ef174e548
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/igv.js/igv.css
@@ -0,0 +1,1394 @@
+.igv-color-swatch {
+  display: flex;
+  flex-flow: row;
+  flex-wrap: wrap;
+  justify-content: center;
+  align-items: center;
+  width: 24px;
+  height: 24px;
+  border-style: solid;
+  border-width: 1px;
+  border-color: transparent; }
+  .igv-color-swatch i.fa {
+    display: block; }
+  .igv-color-swatch i.fa:hover,
+  .igv-color-swatch i.fa:focus,
+  .igv-color-swatch i.fa:active {
+    cursor: pointer;
+    color: #0f0f0f; }
+
+.igv-color-swatch:hover,
+.igv-color-swatch:focus,
+.igv-color-swatch:active {
+  border-color: #dddddd; }
+
+.igv-colorpicker-menu-close-button {
+  display: flex;
+  flex-flow: row;
+  flex-wrap: nowrap;
+  justify-content: flex-end;
+  align-items: center;
+  width: 100%;
+  height: 32px;
+  margin-top: 4px;
+  margin-bottom: 4px;
+  padding-right: 8px; }
+  .igv-colorpicker-menu-close-button i.fa {
+    display: block;
+    margin-left: 4px;
+    margin-right: 4px;
+    color: #5f5f5f; }
+  .igv-colorpicker-menu-close-button i.fa:hover,
+  .igv-colorpicker-menu-close-button i.fa:focus,
+  .igv-colorpicker-menu-close-button i.fa:active {
+    cursor: pointer;
+    color: #0f0f0f; }
+
+.igv-position-absolute {
+  position: absolute;
+  top: 0;
+  left: 0; }
+
+.igv-generic-container {
+  width: 256px;
+  z-index: 5000;
+  background-color: white;
+  border-style: solid;
+  border-width: thin;
+  border-color: #dddddd;
+  cursor: pointer;
+  display: flex;
+  flex-direction: row;
+  flex-wrap: wrap;
+  justify-content: flex-start;
+  align-items: center; }
+  .igv-generic-container div:first-child {
+    display: flex;
+    flex-flow: row;
+    flex-wrap: nowrap;
+    justify-content: flex-end;
+    align-items: center;
+    height: 24px;
+    width: 100%;
+    background-color: #dddddd; }
+    .igv-generic-container div:first-child i.fa {
+      margin-right: 4px;
+      display: block;
+      color: #5f5f5f; }
+    .igv-generic-container div:first-child i.fa:hover,
+    .igv-generic-container div:first-child i.fa:focus,
+    .igv-generic-container div:first-child i.fa:active {
+      cursor: pointer;
+      color: #0f0f0f; }
+
+.igv-navbar {
+  position: relative;
+  top: 0;
+  left: 0;
+  height: 30px;
+  padding-top: 2px;
+  padding-bottom: 2px;
+  padding-left: 4px;
+  padding-right: 4px;
+  border-style: solid;
+  border-radius: 3px;
+  border-width: thin;
+  border-color: #bfbfbf;
+  background-color: #f3f3f3; }
+  .igv-navbar i {
+    cursor: pointer;
+    color: #666666; }
+  .igv-navbar i:hover,
+  .igv-navbar i:focus,
+  .igv-navbar i:active {
+    color: #434343; }
+
+.igv-logo {
+  float: left;
+  margin-left: 4px;
+  margin-right: 8px;
+  position: relative;
+  top: 4px;
+  left: 0;
+  width: 34px;
+  height: 16px;
+  background: url(img/igv-logo.svg);
+  background-size: 34px 16px;
+  background-repeat: no-repeat;
+  background-position: 0 0; }
+
+.igv-logo-nonav {
+  margin-left: 4px;
+  margin-top: 12px;
+  position: absolute;
+  top: 0;
+  left: 0;
+  width: 34px;
+  height: 16px;
+  background: url(img/igv-logo.svg);
+  background-size: 34px 16px;
+  background-repeat: no-repeat;
+  background-position: 0 0; }
+
+.igv-chromosome-select-widget-container {
+  position: relative;
+  float: left;
+  height: 90%;
+  width: 96px;
+  margin-right: 4px; }
+  .igv-chromosome-select-widget-container select {
+    position: relative;
+    width: 100%;
+    height: 100%; }
+
+.igv-search-container {
+  position: relative;
+  top: 0;
+  width: 260px;
+  float: left; }
+  .igv-search-container input {
+    position: relative;
+    height: 20px;
+    width: 80%;
+    padding-left: 8px;
+    outline: none;
+    border-style: solid;
+    border-radius: 3px;
+    border-width: thin;
+    border-color: #bfbfbf;
+    font-family: "Open Sans", sans-serif;
+    font-size: small;
+    font-weight: 400;
+    color: #444;
+    background-color: white; }
+  .igv-search-container i {
+    font-size: 18px;
+    padding-left: 6px; }
+
+.igv-search-results {
+  position: absolute;
+  top: 32px;
+  left: 2px;
+  height: 320px;
+  width: 213px;
+  background-color: white;
+  border-color: #7F7F7F;
+  border-style: solid;
+  border-width: thin;
+  overflow-x: hidden;
+  overflow-y: auto;
+  z-index: 9999; }
+  .igv-search-results tr {
+    font-family: "Open Sans", sans-serif;
+    font-size: small;
+    font-weight: 400;
+    color: #444; }
+  .igv-search-results tr:hover,
+  .igv-search-results tr:focus,
+  .igv-search-results tr:active {
+    cursor: pointer;
+    font-weight: 700;
+    color: #141414; }
+
+.igv-nav-bar-toggle-button {
+  cursor: pointer;
+  position: relative;
+  height: 20px;
+  min-width: 110px;
+  text-transform: capitalize;
+  float: right;
+  margin-top: 2px;
+  margin-right: 5px;
+  padding-left: 8px;
+  padding-right: 8px;
+  padding-top: 2px;
+  padding-bottom: 2px;
+  font-family: "Open Sans", sans-serif;
+  font-size: 12px;
+  font-weight: 200;
+  text-align: center;
+  vertical-align: middle;
+  border-style: solid;
+  border-width: thin;
+  border-radius: 10px; }
+
+.igv-nav-bar-toggle-button-on {
+  color: #737373;
+  border-color: #737373;
+  background-color: #f3f3f3; }
+
+.igv-nav-bar-toggle-button-off {
+  color: white;
+  border-color: #737373;
+  background-color: #737373; }
+
+.igv-zoom-widget {
+  position: relative;
+  float: right;
+  margin-left: 40px; }
+  .igv-zoom-widget i {
+    font-size: 24px; }
+  .igv-zoom-widget i:first-child {
+    padding-right: 4px; }
+
+.igv-karyo-div {
+  position: relative;
+  left: 0;
+  top: 0;
+  height: 200px; }
+
+.igv-karyo-hide {
+  height: 0;
+  overflow: hidden; }
+
+.igv-karyo-content-div {
+  left: 0;
+  top: 0;
+  width: 100%;
+  height: 100%; }
+
+.igv-karyo-canvas {
+  left: 0;
+  top: 0;
+  width: 100%;
+  height: 100%; }
+
+.igv-ideogram-left-shim {
+  position: relative;
+  float: left;
+  height: 14px;
+  margin-top: 2px;
+  margin-bottom: 2px;
+  width: 50px; }
+
+.igv-ideogram-content-div {
+  position: relative;
+  float: left;
+  height: 14px;
+  margin-top: 2px;
+  margin-bottom: 2px;
+  background-color: white; }
+  .igv-ideogram-content-div canvas {
+    width: 100%;
+    height: 100%; }
+
+.igv-ideogram-content-div-border-right {
+  border-right-color: white;
+  border-right-style: solid;
+  border-right-width: 4px; }
+
+.igv-ideogram-content-div-border-left {
+  border-left-color: white;
+  border-left-style: solid;
+  border-left-width: thin; }
+
+.igv-root-div {
+  position: relative;
+  left: 0;
+  right: 0;
+  height: auto;
+  margin-left: 10px;
+  margin-right: 10px;
+  padding-top: 4px; }
+
+.igv-content-div {
+  position: relative;
+  width: 100%;
+  height: 100%; }
+
+.igv-track-container-div {
+  position: relative;
+  clear: both; }
+
+.igv-track-div {
+  position: relative;
+  width: 100%; }
+
+.igv-viewport-container {
+  position: absolute;
+  left: 0;
+  right: 50px;
+  height: 100%;
+  /*overflow: hidden;*/
+  overflow-x: hidden;
+  overflow-y: hidden; }
+
+.igv-viewport-container-shim {
+  left: 50px; }
+
+.igv-viewport-div {
+  float: left;
+  position: relative;
+  /*width: 100%;*/
+  height: 100%;
+  overflow-x: hidden;
+  overflow-y: hidden; }
+
+.igv-viewport-content-div {
+  position: absolute;
+  width: 100%;
+  height: 100%; }
+  .igv-viewport-content-div .igv-whole-genome-container {
+    display: flex;
+    flex-flow: row;
+    flex-wrap: nowrap;
+    justify-content: space-between;
+    width: 100%;
+    height: 100%;
+    background-color: white; }
+    .igv-viewport-content-div .igv-whole-genome-container div {
+      font-family: "Open Sans", sans-serif;
+      font-size: 10px;
+      font-weight: 400;
+      color: #444;
+      height: 100%;
+      text-align: center;
+      border-right-color: #bfbfbf;
+      border-right-style: solid;
+      border-right-width: thin; }
+      .igv-viewport-content-div .igv-whole-genome-container div span {
+        display: block;
+        padding-top: 6px;
+        text-overflow: ellipsis; }
+    .igv-viewport-content-div .igv-whole-genome-container div:last-child {
+      border-right-color: transparent; }
+    .igv-viewport-content-div .igv-whole-genome-container div:hover,
+    .igv-viewport-content-div .igv-whole-genome-container div:focus,
+    .igv-viewport-content-div .igv-whole-genome-container div:active {
+      cursor: pointer;
+      background-color: #efefef; }
+  .igv-viewport-content-div canvas {
+    width: 100%;
+    height: 100%; }
+
+.igv-viewport-div-border-right {
+  border-right-color: white;
+  border-right-style: solid;
+  border-right-width: 4px; }
+
+.igv-viewport-div-border-left {
+  border-left-color: rgba(0, 0, 0, 0.25);
+  border-left-style: solid;
+  border-left-width: thin; }
+
+.igv-viewport-fa-close {
+  position: absolute;
+  top: 4px;
+  right: 4px;
+  z-index: 1000; }
+
+.igv-viewport-content-ruler-div {
+  position: absolute;
+  left: 50%;
+  top: 25%;
+  transform: translate(-50%, -25%);
+  font-family: "Open Sans", sans-serif;
+  font-size: 12px;
+  font-weight: 200;
+  text-align: center;
+  min-width: 16px;
+  z-index: 64;
+  color: #0066ff;
+  background-color: white;
+  padding: 1px; }
+
+.igv-viewport-content-ruler-div:hover,
+.igv-viewport-content-ruler-div:focus,
+.igv-viewport-content-ruler-div:active {
+  cursor: pointer;
+  color: white;
+  background-color: #0066ff; }
+
+.igv-viewport-ruler {
+  font-family: "Open Sans", sans-serif;
+  font-size: 10px;
+  font-weight: 200;
+  text-align: center; }
+
+.igv-viewport-sequence {
+  font-family: "Open Sans", sans-serif;
+  font-size: 8px;
+  font-weight: 200;
+  text-align: center; }
+
+.igv-viewport-spinner {
+  pointer-events: none;
+  position: absolute;
+  top: 50%;
+  left: 50%;
+  transform: translate(-50%, -50%);
+  z-index: 1024;
+  color: #737373; }
+
+.igv-ruler-sweeper-div {
+  display: none;
+  pointer-events: none;
+  position: absolute;
+  top: 0;
+  left: 0;
+  width: 0;
+  height: 100%;
+  z-index: 99999;
+  background-color: rgba(68, 134, 247, 0.25); }
+
+.igv-right-hand-gutter {
+  position: absolute;
+  right: 0;
+  width: 36px;
+  height: 100%;
+  background: white;
+  text-align: center; }
+  .igv-right-hand-gutter i {
+    position: absolute;
+    top: 0;
+    right: 0;
+    padding-right: 6px;
+    font-size: 20px;
+    cursor: pointer;
+    color: grey; }
+  .igv-right-hand-gutter i:hover,
+  .igv-right-hand-gutter i:focus,
+  .igv-right-hand-gutter i:active {
+    color: #333333; }
+
+.igv-left-hand-gutter {
+  position: absolute;
+  left: 0;
+  width: 50px;
+  height: 100%; }
+  .igv-left-hand-gutter canvas {
+    position: absolute; }
+
+.igv-windowsizepanel-content-div {
+  position: relative;
+  height: 100%;
+  float: left;
+  padding-top: 6px;
+  text-align: center;
+  vertical-align: middle;
+  line-height: 100%;
+  font-family: "Open Sans", sans-serif;
+  font-size: 14px;
+  font-weight: 400;
+  color: #444; }
+
+.igv-track-menu-container {
+  background-color: white;
+  border-bottom-left-radius: 4px;
+  border-bottom-right-radius: 4px; }
+  .igv-track-menu-container div {
+    padding-left: 4px;
+    padding-right: 4px;
+    padding-top: 2px;
+    padding-bottom: 2px;
+    background-color: white; }
+    .igv-track-menu-container div i {
+      padding-right: 2px; }
+  .igv-track-menu-container div:hover,
+  .igv-track-menu-container div:focus,
+  .igv-track-menu-container div:active {
+    cursor: pointer;
+    background-color: #efefef; }
+  .igv-track-menu-container a {
+    color: inherit;
+    text-decoration: none; }
+
+.igv-track-menu-border-top {
+  border-top-color: #a2a2a2;
+  border-top-style: solid;
+  border-top-width: thin; }
+
+.igv-track-menu-category {
+  padding-left: 4px;
+  font-weight: 400; }
+
+.igv-track-drag-scrim {
+  position: absolute;
+  left: 0;
+  top: 0;
+  width: 100%;
+  height: 100%;
+  z-index: 256;
+  background-color: rgba(68, 134, 247, 0.25); }
+
+.igv-track-manipulation-handle {
+  cursor: pointer;
+  position: absolute;
+  right: 36px;
+  width: 12px;
+  margin-left: 2px;
+  margin-top: 1px;
+  margin-bottom: 1px;
+  height: 100%;
+  box-sizing: border-box;
+  font-size: medium;
+  border-color: #c4c4c4;
+  border-style: solid;
+  border-width: thin;
+  border-top-right-radius: 6px;
+  border-bottom-right-radius: 6px;
+  z-index: 512;
+  background-color: #c4c4c4; }
+
+.igv-track-manipulation-handle:hover,
+.igv-track-manipulation-handle:focus,
+.igv-track-manipulation-handle:active {
+  border-color: #7e7e7e;
+  background-color: #7e7e7e; }
+
+.igv-track-label {
+  position: absolute;
+  left: 8px;
+  top: 4px;
+  width: auto;
+  height: auto;
+  max-width: 200px;
+  padding-left: 4px;
+  padding-right: 4px;
+  white-space: nowrap;
+  overflow: hidden;
+  text-overflow: ellipsis;
+  font-family: "Open Sans", sans-serif;
+  font-size: small;
+  font-weight: 400;
+  text-align: center;
+  user-select: none;
+  -moz-user-select: none;
+  -webkit-user-select: none;
+  border-color: #444;
+  border-radius: 2px;
+  border-style: solid;
+  border-width: thin;
+  background-color: white;
+  z-index: 128; }
+
+.igv-track-label:hover,
+.igv-track-label:focus,
+.igv-track-label:active {
+  cursor: pointer;
+  font-weight: bold; }
+
+.igv-scrollbar-outer-div {
+  position: absolute;
+  top: 0;
+  right: 0;
+  width: 14px;
+  height: 100%;
+  background-color: white; }
+  .igv-scrollbar-outer-div div {
+    position: absolute;
+    top: 0;
+    left: 3px;
+    width: 8px;
+    border-style: solid;
+    border-width: thin;
+    border-color: #c4c4c4;
+    border-top-left-radius: 4px;
+    border-top-right-radius: 4px;
+    border-bottom-left-radius: 4px;
+    border-bottom-right-radius: 4px;
+    background-color: white; }
+  .igv-scrollbar-outer-div div:hover,
+  .igv-scrollbar-outer-div div:focus,
+  .igv-scrollbar-outer-div div:active {
+    cursor: pointer;
+    background-color: #c4c4c4; }
+
+.zoom-in-notice-container {
+  position: absolute;
+  top: 25%;
+  left: 50%; }
+  .zoom-in-notice-container div {
+    position: relative;
+    left: -50%;
+    font-family: "Open Sans", sans-serif;
+    font-size: medium;
+    font-weight: 400;
+    color: #3f3f3f;
+    background-color: rgba(255, 255, 255, 0.51);
+    z-index: 64; }
+
+.igv-center-guide {
+  pointer-events: none;
+  position: absolute;
+  top: 0;
+  bottom: 0;
+  left: 50%;
+  width: 8px;
+  z-index: 8;
+  display: none;
+  user-select: none;
+  -moz-user-select: none;
+  -webkit-user-select: none;
+  border-left-style: dashed;
+  border-left-width: thin;
+  border-right-style: dashed;
+  border-right-width: thin; }
+
+.igv-center-guide-wide {
+  background-color: transparent;
+  border-left-color: rgba(127, 127, 127, 0.51);
+  border-right-color: rgba(127, 127, 127, 0.51); }
+
+.igv-center-guide-thin {
+  left: 50%;
+  width: 1px;
+  background-color: transparent;
+  border-left-color: rgba(127, 127, 127, 0.51);
+  border-right-color: transparent;
+  /*background-color: rgba(127, 127, 127, 0.51);*/
+  /*border-left-color: rgba(0,0,0,0);*/
+  /*border-right-color: rgba(0,0,0,0);*/ }
+
+.igv-cursor-tracking-guide {
+  position: absolute;
+  top: 0;
+  bottom: 0;
+  left: 50%;
+  width: 1px;
+  z-index: 1;
+  border-left-style: dotted;
+  border-left-width: thin;
+  border-left-color: rgba(127, 127, 127, 0.76);
+  display: none;
+  user-select: none;
+  -moz-user-select: none;
+  -webkit-user-select: none; }
+
+.igv-clickable {
+  cursor: pointer;
+  background-color: white; }
+
+#color-by-tag {
+  color: #444; }
+
+#color-by-tag:hover,
+#color-by-tag:focus,
+#color-by-tag:active {
+  cursor: pointer;
+  padding-left: 2px;
+  padding-right: 2px;
+  color: white;
+  border-color: #444;
+  border-radius: 2px;
+  border-style: solid;
+  border-width: thin;
+  background-color: #7f7f7f; }
+
+.igv-user-feedback {
+  position: fixed;
+  top: 50%;
+  left: 50%;
+  width: 36em;
+  height: 27em;
+  margin-top: -9em;
+  /*set to a negative number 1/2 of your height*/
+  margin-left: -15em;
+  /*set to a negative number 1/2 of your width*/
+  background-color: white;
+  border-color: #a2a2a2;
+  border-style: solid;
+  border-width: thin;
+  font-family: "Open Sans", sans-serif;
+  font-size: medium;
+  font-weight: 400;
+  color: #444; }
+  .igv-user-feedback div:first-child {
+    position: absolute;
+    top: 0;
+    left: 0;
+    right: 0;
+    width: 100%;
+    height: 32px;
+    border-bottom-color: #a2a2a2;
+    border-bottom-style: solid;
+    border-bottom-width: thin;
+    background-color: white; }
+    .igv-user-feedback div:first-child i {
+      font-size: 20px; }
+    .igv-user-feedback div:first-child i:first-child {
+      position: absolute;
+      top: 0;
+      left: 0;
+      padding: 8px;
+      color: red; }
+    .igv-user-feedback div:first-child i:last-child {
+      position: absolute;
+      top: 0;
+      right: 0;
+      padding: 8px;
+      cursor: pointer;
+      color: grey; }
+    .igv-user-feedback div:first-child i:last-child:hover,
+    .igv-user-feedback div:first-child i:last-child:focus,
+    .igv-user-feedback div:first-child i:last-child:active {
+      color: #333333; }
+  .igv-user-feedback div:last-child {
+    padding-left: 48px;
+    padding-top: 8px;
+    padding-right: 48px;
+    padding-bottom: 8px;
+    position: absolute;
+    top: 33px;
+    left: 0;
+    right: 0;
+    bottom: 0;
+    background-color: white; }
+
+.igv-dialog-label-centered {
+  text-align: center; }
+
+.igv-grid-container-dialog {
+  position: absolute;
+  top: 0;
+  left: 0;
+  width: 300px;
+  border-color: #7F7F7F;
+  border-radius: 4px;
+  border-style: solid;
+  border-width: thin;
+  z-index: 1999;
+  background-color: white; }
+
+.igv-grid-container-alert-dialog {
+  position: absolute;
+  left: 0;
+  right: 0;
+  top: 45%;
+  margin-left: auto;
+  margin-right: auto;
+  /*max-width: 740px;*/
+  max-width: 300px;
+  border-color: #7F7F7F;
+  border-radius: 4px;
+  border-style: solid;
+  border-width: thin;
+  z-index: 1999;
+  background-color: white; }
+
+.igv-grid-header {
+  position: relative;
+  top: 0;
+  left: 0;
+  height: 24px;
+  cursor: move;
+  border-color: #c4c4c4;
+  border-top-left-radius: 4px;
+  border-top-right-radius: 4px;
+  border-style: solid;
+  border-width: thin;
+  background-color: #c4c4c4; }
+  .igv-grid-header div {
+    position: relative;
+    padding-left: 4px; }
+    .igv-grid-header div i {
+      cursor: pointer; }
+
+.igv-grid-header-blurb {
+  margin-top: 4px;
+  text-align: center;
+  vertical-align: middle;
+  font-family: "Open Sans", sans-serif;
+  font-size: medium;
+  font-weight: 200; }
+
+.igv-grid-dividing-line {
+  display: block;
+  height: 1px;
+  border: 0;
+  border-top: 1px solid #c4c4c4;
+  margin: 8px; }
+
+.igv-grid-rect {
+  border-radius: 4px;
+  border-style: solid;
+  border-width: thin;
+  border-color: white;
+  padding-left: 4px;
+  padding-right: 4px;
+  background-color: white; }
+
+.igv-grid-rect-hidden {
+  display: none; }
+
+.igv-grid-colorpicker {
+  height: 32px; }
+
+.igv-grid-colorpicker:after {
+  content: "";
+  display: table;
+  clear: both; }
+
+.igv-grid-colorpicker-user-error {
+  height: 16px;
+  color: #55aeff;
+  font-family: "Open Sans", sans-serif;
+  font-size: small;
+  font-weight: 400;
+  background-color: white; }
+
+.igv-grid-dialog {
+  height: 40px; }
+
+.igv-col {
+  height: 100%;
+  padding: 2px; }
+
+.igv-data-range-input-label {
+  /*padding-top: 8px;*/
+  padding-left: 8px;
+  text-align: right;
+  font-family: "Open Sans", sans-serif;
+  font-size: medium;
+  font-weight: 200;
+  color: #575757; }
+
+.igv-data-range-input {
+  outline: none;
+  border-style: solid;
+  border-radius: 4px;
+  border-width: thin;
+  border-color: #7F7F7F;
+  width: 100%;
+  padding-left: 8px;
+  vertical-align: middle;
+  text-align: left;
+  font-family: "Open Sans", sans-serif;
+  font-size: medium;
+  font-weight: 200;
+  color: #575757; }
+
+.igv-user-input-colorpicker {
+  outline: none;
+  border-style: solid;
+  border-radius: 4px;
+  border-width: thin;
+  border-color: #7F7F7F;
+  width: 100%;
+  margin-top: 2px;
+  font-family: "Open Sans", sans-serif;
+  font-size: medium;
+  font-weight: 200;
+  color: #575757; }
+
+.igv-user-input-dialog {
+  outline: none;
+  border-style: solid;
+  border-radius: 4px;
+  border-width: thin;
+  border-color: #7F7F7F;
+  width: 100%;
+  padding-left: 8px;
+  vertical-align: middle;
+  text-align: left;
+  font-family: "Open Sans", sans-serif;
+  font-size: medium;
+  font-weight: 200;
+  color: #575757; }
+
+.igv-alert-dialog-text {
+  padding-top: 8px;
+  padding-left: 8px;
+  word-wrap: break-word;
+  text-align: center;
+  font-family: "Open Sans", sans-serif;
+  font-size: 14px;
+  font-weight: 200;
+  color: #575757; }
+
+.igv-user-input-label {
+  padding-top: 8px;
+  padding-left: 8px;
+  text-align: left;
+  font-family: "Open Sans", sans-serif;
+  font-size: medium;
+  font-weight: 200;
+  color: #575757; }
+
+.igv-col-label {
+  padding-left: 8px;
+  padding-top: 6px;
+  font-family: "Open Sans", sans-serif;
+  font-size: medium;
+  font-weight: 200;
+  color: #575757; }
+
+.igv-col-filler {
+  width: 100%;
+  height: 100%;
+  border-color: white;
+  border-style: solid;
+  border-width: thin;
+  border-radius: 4px; }
+
+.igv-col-filler:hover,
+.igv-col-filler:focus,
+.igv-col-filler:active {
+  border-width: medium;
+  border-color: #474747; }
+
+.igv-col-filler-no-color {
+  width: 100%;
+  height: 100%;
+  border-color: white;
+  border-style: solid;
+  border-width: thin;
+  border-radius: 4px; }
+
+.igv-col-filler-user-color {
+  width: 100%;
+  height: 100%;
+  border-color: white;
+  border-style: solid;
+  border-width: thin;
+  border-radius: 4px; }
+
+/* ok button */
+.igv-col-filler-ok-button {
+  margin-left: 8px;
+  padding-left: 1px;
+  padding-top: 5px;
+  width: 90%;
+  height: 90%;
+  border-color: white;
+  border-style: solid;
+  border-width: thin;
+  border-radius: 4px;
+  color: white;
+  text-align: center;
+  vertical-align: middle;
+  font-family: "Open Sans", sans-serif;
+  font-size: medium;
+  font-weight: 200;
+  background-color: #5ea4e0; }
+
+.igv-col-filler-ok-button:hover,
+.igv-col-filler-ok-button:focus,
+.igv-col-filler-ok-button:active {
+  background-color: #5079a8; }
+
+/* cancel button */
+.igv-col-filler-cancel-button {
+  margin-left: 8px;
+  padding-left: 1px;
+  padding-top: 5px;
+  width: 90%;
+  height: 90%;
+  border-color: white;
+  border-style: solid;
+  border-width: thin;
+  border-radius: 4px;
+  color: white;
+  text-align: center;
+  vertical-align: middle;
+  font-family: "Open Sans", sans-serif;
+  font-size: medium;
+  font-weight: 200;
+  background-color: #c4c4c4; }
+
+.igv-col-filler-cancel-button:hover,
+.igv-col-filler-cancel-button:focus,
+.igv-col-filler-cancel-button:active {
+  background-color: #7e7e7e; }
+
+/* 3 columns */
+.igv-col-1-3 {
+  width: 33.33333%; }
+
+.igv-col-2-3 {
+  width: 66.66667%; }
+
+/* 4 columns */
+.igv-col-1-4 {
+  width: 25%; }
+
+.igv-col-2-4 {
+  width: 50%; }
+
+.igv-col-3-4 {
+  width: 75%; }
+
+.igv-col-4-4 {
+  width: 100%; }
+
+/* 8 columns */
+.igv-col-1-8 {
+  width: 12.5%; }
+
+.igv-col-2-8 {
+  width: 25%; }
+
+.igv-col-3-8 {
+  width: 37.5%; }
+
+.igv-col-4-8 {
+  width: 50%; }
+
+.igv-col-5-8 {
+  width: 62.5%; }
+
+.igv-col-6-8 {
+  width: 75%; }
+
+.igv-col-7-8 {
+  width: 87.5%; }
+
+.igv-col-8-8 {
+  width: 100%; }
+
+/*   end grid.css */
+.fa-check-hidden {
+  color: rgba(255, 255, 255, 0); }
+
+.validateTips {
+  border: 1px solid transparent;
+  padding: 0.3em; }
+  .validateTips fieldset {
+    border: 0; }
+
+/* pop up menu */
+.igv-popover {
+  position: absolute;
+  top: 0;
+  left: 0;
+  min-width: 128px;
+  z-index: 4096;
+  font-family: "Open Sans", sans-serif;
+  font-size: small;
+  font-weight: 400;
+  color: #444;
+  background: white;
+  border-radius: 4px;
+  border-color: #7F7F7F;
+  border-style: solid;
+  border-width: thin;
+  display: none; }
+
+.igv-popover-header {
+  position: relative;
+  top: 0;
+  left: 0;
+  width: 100%;
+  height: 20px;
+  border-top-left-radius: 4px;
+  border-top-right-radius: 4px;
+  border-bottom-color: #7F7F7F;
+  border-bottom-style: solid;
+  border-bottom-width: thin;
+  background-color: #eee; }
+  .igv-popover-header div {
+    position: absolute;
+    top: 3px;
+    right: 3px;
+    height: 100%;
+    width: 16px;
+    text-align: center;
+    line-height: 100%; }
+    .igv-popover-header div i {
+      cursor: pointer;
+      color: #444;
+      font-size: small; }
+  .igv-popover-header div:hover {
+    color: white; }
+
+.igv-popover-track-popup-content {
+  position: relative;
+  top: 0;
+  left: 0;
+  max-height: 384px;
+  overflow-x: hidden;
+  overflow-y: auto; }
+
+.igv-popover-name-value {
+  cursor: default;
+  text-wrap: none;
+  white-space: nowrap;
+  max-width: 384px; }
+
+.igv-popover-name {
+  font-weight: bold;
+  padding-right: 4px;
+  float: left; }
+
+.igv-popover-value {
+  padding-left: 4px;
+  overflow: hidden;
+  white-space: nowrap;
+  text-overflow: ellipsis;
+  max-width: 256px;
+  display: inline-block; }
+
+.igv-spinner-container {
+  color: #3f3f3f;
+  width: 100%;
+  height: 100%;
+  text-align: center;
+  padding-top: 8px;
+  font-size: 24px;
+  z-index: 512; }
+
+.spacer10 {
+  height: 10px;
+  width: 100%;
+  font-size: 0;
+  margin: 0;
+  padding: 0;
+  border: 0;
+  display: block; }
+
+[class*='igv-col-'] {
+  float: left; }
+
+[class*='igv-'], [class*='igv-']:after, [class*='igv-']:before {
+  -webkit-box-sizing: border-box;
+  -moz-box-sizing: border-box;
+  box-sizing: border-box; }
+
+.igv-cursor-ui-header {
+  margin-top: 4px;
+  width: 100%;
+  height: auto;
+  background-size: 100px 32px;
+  background-repeat: no-repeat;
+  background-position: 21px 9px; }
+
+.igv-cursor-ui-holder {
+  width: 640px;
+  margin: auto; }
+
+.igv-cursor-ui {
+  margin: auto;
+  width: 100%;
+  display: inline-block;
+  border: solid 1px grey;
+  background-color: #fff;
+  border-top: none;
+  border-bottom-left-radius: 5px;
+  border-bottom-right-radius: 5px;
+  padding: 5px 5px 5px 5px; }
+
+.igv-cursor-ui-item {
+  float: left;
+  color: grey;
+  font-weight: 400;
+  padding: 5px 8px 5px 8px; }
+
+.igv-drag-and-drop-presentation-button {
+  position: relative;
+  height: 20px;
+  min-width: 110px;
+  text-transform: capitalize;
+  float: left;
+  margin-top: 2px;
+  margin-right: 5px;
+  padding-left: 8px;
+  padding-right: 8px;
+  padding-top: 2px;
+  padding-bottom: 2px;
+  font-family: "Open Sans", sans-serif;
+  font-size: 12px;
+  font-weight: 200;
+  text-align: center;
+  vertical-align: middle;
+  color: #737373;
+  border-color: #737373;
+  background-color: #f3f3f3;
+  border-style: solid;
+  border-width: thin;
+  border-radius: 10px; }
+
+.igv-drag-and-drop-presentation-button:hover,
+.igv-drag-and-drop-presentation-button:focus,
+.igv-drag-and-drop-presentation-button:active {
+  cursor: pointer;
+  color: white;
+  border-color: #737373;
+  background-color: #737373; }
+
+.igv-drag-drop-container {
+  position: absolute;
+  top: 100px;
+  left: 25%;
+  width: 50%;
+  text-align: center;
+  margin: 0 auto;
+  padding-top: 64px;
+  padding-bottom: 8px;
+  padding-left: 16px;
+  padding-right: 16px;
+  z-index: 2000;
+  background-color: #c8dadf;
+  display: flex;
+  flex-flow: column;
+  flex-wrap: nowrap;
+  justify-content: space-around; }
+
+.igv-drag-drop-container.is-dragover {
+  background-color: rgba(200, 218, 223, 0.51); }
+
+.igv-drag-and-drop-close-container {
+  position: absolute;
+  top: 16px;
+  right: 18px;
+  text-align: center;
+  line-height: 100%;
+  cursor: pointer; }
+  .igv-drag-and-drop-close-container i.fa-times {
+    color: #92b0b3; }
+  .igv-drag-and-drop-close-container i.fa-times-circle {
+    color: #36464b; }
+
+.igv-drag-drop-surface {
+  position: relative;
+  color: #36464b;
+  font-family: 'Open Sans', sans-serif;
+  font-size: 18px;
+  font-weight: 200; }
+
+.igv-drag-drop-surface .igv-drag-drop-surface-blurb {
+  display: inline; }
+
+.igv-drag-and-drop-url-input-container {
+  position: relative;
+  width: 96%;
+  margin: 8px auto; }
+
+.igv-drag-and-drop-url-input-container > div {
+  margin-top: 14px;
+  margin-bottom: 14px; }
+
+.igv-drag-drop-ok {
+  width: 90%;
+  margin: 4px auto;
+  padding: 4px;
+  color: #36464b;
+  font-family: 'Open Sans', sans-serif;
+  font-size: 18px;
+  font-weight: 200;
+  text-align: center;
+  border-style: solid;
+  border-radius: 3px;
+  border-width: thin;
+  border-color: #36464b;
+  background-color: #c8dadf; }
+
+.igv-drag-drop-ok:hover,
+.igv-drag-drop-ok:focus,
+.igv-drag-drop-ok:active {
+  cursor: pointer;
+  color: white;
+  background-color: #36464b; }
+
+.igv-drag-drop-cancel {
+  width: 90%;
+  margin: 4px auto;
+  padding: 4px;
+  color: white;
+  font-family: 'Open Sans', sans-serif;
+  font-size: 18px;
+  font-weight: 200;
+  text-align: center;
+  border-style: solid;
+  border-radius: 3px;
+  border-width: thin;
+  border-color: #36464b;
+  background-color: #36464b; }
+
+.igv-drag-drop-cancel:hover,
+.igv-drag-drop-cancel:focus,
+.igv-drag-drop-cancel:active {
+  cursor: pointer; }
+
+.igv-drag-drop-warning {
+  position: relative;
+  width: 90%;
+  margin: 4px auto;
+  color: #373737;
+  font-family: 'Open Sans', sans-serif;
+  font-size: 18px;
+  font-weight: 400;
+  text-align: left;
+  border-style: solid;
+  border-radius: 3px;
+  border-width: thin;
+  border-color: #373737;
+  background-color: white;
+  overflow: auto; }
+  .igv-drag-drop-warning #warning-message {
+    padding-top: 4px;
+    padding-bottom: 4px;
+    padding-left: 8px;
+    float: left;
+    width: 90%;
+    background-color: transparent;
+    overflow: auto; }
+  .igv-drag-drop-warning #warning-dismiss {
+    float: right;
+    color: #bfbfbf;
+    padding-top: 2px;
+    padding-right: 4px; }
+  .igv-drag-drop-warning #warning-dismiss:hover,
+  .igv-drag-drop-warning #warning-dismiss:focus,
+  .igv-drag-drop-warning #warning-dismiss:active {
+    cursor: pointer;
+    color: #373737; }
+
+.igv-drag-and-drop-url-input-feedback {
+  width: 100%;
+  color: #36464b;
+  font-family: 'Open Sans', sans-serif;
+  font-size: 18px;
+  font-weight: 200;
+  text-align: center;
+  padding-left: 4px; }
+
+.igv-drag-and-drop-url-input {
+  display: block;
+  width: 100%;
+  color: #36464b;
+  background-color: transparent;
+  font-family: 'Open Sans', sans-serif;
+  font-size: 18px;
+  font-weight: 200;
+  text-align: center;
+  padding: 4px;
+  margin: 8px;
+  border: 0;
+  border-bottom: 2px solid #36464b; }
+
+.igv-drag-and-drop-url-input:focus,
+.igv-drag-and-drop-url-input:active {
+  background: white;
+  border-bottom: transparent; }
+
+.igv-track-file-input-css {
+  width: 0.1px;
+  height: 0.1px;
+  opacity: 0;
+  overflow: hidden;
+  position: absolute;
+  z-index: -1; }
+
+.igv-track-file-input-css:hover + label strong {
+  color: #39bfd3; }
+
+.igv-drag-drop-file-input {
+  position: relative; }
+
+.igv-drag-drop-file-input label {
+  max-width: 80%;
+  text-overflow: ellipsis;
+  white-space: nowrap;
+  cursor: pointer;
+  display: inline-block;
+  overflow: hidden; }
+
+.igv-drag-drop-shim {
+  position: relative;
+  width: 100%;
+  height: 8px;
+  margin: 0 auto;
+  color: transparent;
+  background-color: transparent; }
+
+/*# sourceMappingURL=igv.css.map */
diff --git a/kbase-extension/static/ext_packages/igv/igv.js/igv.min.js b/kbase-extension/static/ext_packages/igv/igv.js/igv.min.js
new file mode 100644
index 0000000000..c5230a0a39
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/igv.js/igv.min.js
@@ -0,0 +1,25 @@
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input=document.createElement("input");input.setAttribute("type","hidden"),div.appendChild(input).setAttribute("name","D"),div.querySelectorAll("[name=d]").length&&rbuggyQSA.push("name"+whitespace+"*[*^$|!~]?="),div.querySelectorAll(":enabled").length||rbuggyQSA.push(":enabled",":disabled"),div.querySelectorAll("*,:x"),rbuggyQSA.push(",.*:")})),(support.matchesSelector=rnative.test(matches=docElem.matches||docElem.webkitMatchesSelector||docElem.mozMatchesSelector||docElem.oMatchesSelector||docElem.msMatchesSelector))&&assert(function(div){support.disconnectedMatch=matches.call(div,"div"),matches.call(div,"[s!='']:x"),rbuggyMatches.push("!=",pseudos)}),rbuggyQSA=rbuggyQSA.length&&new RegExp(rbuggyQSA.join("|")),rbuggyMatches=rbuggyMatches.length&&new RegExp(rbuggyMatches.join("|")),hasCompare=rnative.test(docElem.compareDocumentPosition),contains=hasCompare||rnative.test(docElem.contains)?function(a,b){var adown=9===a.nodeType?a.documentElement:a,bup=b&&b.parentNode;return a===bup||!(!bup||1!==bup.nodeType||!(adown.contains?adown.contains(bup):a.compareDocumentPosition&&16&a.compareDocumentPosition(bup)))}:function(a,b){if(b)for(;b=b.parentNode;)if(b===a)return!0;return!1},sortOrder=hasCompare?function(a,b){if(a===b)return hasDuplicate=!0,0;var compare=!a.compareDocumentPosition-!b.compareDocumentPosition;return compare?compare:(compare=(a.ownerDocument||a)===(b.ownerDocument||b)?a.compareDocumentPosition(b):1,1&compare||!support.sortDetached&&b.compareDocumentPosition(a)===compare?a===document||a.ownerDocument===preferredDoc&&contains(preferredDoc,a)?-1:b===document||b.ownerDocument===preferredDoc&&contains(preferredDoc,b)?1:sortInput?indexOf(sortInput,a)-indexOf(sortInput,b):0:4&compare?-1:1)}:function(a,b){if(a===b)return hasDuplicate=!0,0;var cur,i=0,aup=a.parentNode,bup=b.parentNode,ap=[a],bp=[b];if(!aup||!bup)return a===document?-1:b===document?1:aup?-1:bup?1:sortInput?indexOf(sortInput,a)-indexOf(sortInput,b):0;if(aup===bup)return 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ui=ui||this._uiHash(),$.ui.plugin.call(this,type,[event,ui,this],!0),/^(drag|start|stop)/.test(type)&&(this.positionAbs=this._convertPositionTo("absolute"),ui.offset=this.positionAbs),$.Widget.prototype._trigger.call(this,type,event,ui)},plugins:{},_uiHash:function(){return{helper:this.helper,position:this.position,originalPosition:this.originalPosition,offset:this.positionAbs}}}),$.ui.plugin.add("draggable","connectToSortable",{start:function(event,ui,draggable){var uiSortable=$.extend({},ui,{item:draggable.element});draggable.sortables=[],$(draggable.options.connectToSortable).each(function(){var sortable=$(this).sortable("instance");sortable&&!sortable.options.disabled&&(draggable.sortables.push(sortable),sortable.refreshPositions(),sortable._trigger("activate",event,uiSortable))})},stop:function(event,ui,draggable){var uiSortable=$.extend({},ui,{item:draggable.element});draggable.cancelHelperRemoval=!1,$.each(draggable.sortables,function(){var sortable=this;sortable.isOver?(sortable.isOver=0,draggable.cancelHelperRemoval=!0,sortable.cancelHelperRemoval=!1,sortable._storedCSS={position:sortable.placeholder.css("position"),top:sortable.placeholder.css("top"),left:sortable.placeholder.css("left")},sortable._mouseStop(event),sortable.options.helper=sortable.options._helper):(sortable.cancelHelperRemoval=!0,sortable._trigger("deactivate",event,uiSortable))})},drag:function(event,ui,draggable){$.each(draggable.sortables,function(){var innermostIntersecting=!1,sortable=this;sortable.positionAbs=draggable.positionAbs,sortable.helperProportions=draggable.helperProportions,sortable.offset.click=draggable.offset.click,sortable._intersectsWith(sortable.containerCache)&&(innermostIntersecting=!0,$.each(draggable.sortables,function(){return 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names=[];for(var key in obj)_.isFunction(obj[key])&&names.push(key);return names.sort()},_.extend=createAssigner(_.allKeys),_.extendOwn=_.assign=createAssigner(_.keys),_.findKey=function(obj,predicate,context){predicate=cb(predicate,context);for(var key,keys=_.keys(obj),i=0,length=keys.length;i<length;i++)if(key=keys[i],predicate(obj[key],key,obj))return key},_.pick=function(object,oiteratee,context){var iteratee,keys,result={},obj=object;if(null==obj)return result;_.isFunction(oiteratee)?(keys=_.allKeys(obj),iteratee=optimizeCb(oiteratee,context)):(keys=flatten(arguments,!1,!1,1),iteratee=function(value,key,obj){return key in obj},obj=Object(obj));for(var i=0,length=keys.length;i<length;i++){var key=keys[i],value=obj[key];iteratee(value,key,obj)&&(result[key]=value)}return result},_.omit=function(obj,iteratee,context){if(_.isFunction(iteratee))iteratee=_.negate(iteratee);else{var keys=_.map(flatten(arguments,!1,!1,1),String);iteratee=function(value,key){return!_.contains(keys,key)}}return _.pick(obj,iteratee,context)},_.defaults=createAssigner(_.allKeys,!0),_.create=function(prototype,props){var result=baseCreate(prototype);return props&&_.extendOwn(result,props),result},_.clone=function(obj){return _.isObject(obj)?_.isArray(obj)?obj.slice():_.extend({},obj):obj},_.tap=function(obj,interceptor){return interceptor(obj),obj},_.isMatch=function(object,attrs){var keys=_.keys(attrs),length=keys.length;if(null==object)return!length;for(var obj=Object(object),i=0;i<length;i++){var key=keys[i];if(attrs[key]!==obj[key]||!(key in obj))return!1}return!0};var eq=function(a,b,aStack,bStack){if(a===b)return 0!==a||1/a===1/b;if(null==a||null==b)return a===b;a instanceof _&&(a=a._wrapped),b instanceof _&&(b=b._wrapped);var className=toString.call(a);if(className!==toString.call(b))return!1;switch(className){case"[object RegExp]":case"[object 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eq(a,b)},_.isEmpty=function(obj){return null==obj||(isArrayLike(obj)&&(_.isArray(obj)||_.isString(obj)||_.isArguments(obj))?0===obj.length:0===_.keys(obj).length)},_.isElement=function(obj){return!(!obj||1!==obj.nodeType)},_.isArray=nativeIsArray||function(obj){return"[object Array]"===toString.call(obj)},_.isObject=function(obj){var type=typeof obj;return"function"===type||"object"===type&&!!obj},_.each(["Arguments","Function","String","Number","Date","RegExp","Error"],function(name){_["is"+name]=function(obj){return toString.call(obj)==="[object "+name+"]"}}),_.isArguments(arguments)||(_.isArguments=function(obj){return _.has(obj,"callee")}),"function"!=typeof/./&&"object"!=typeof Int8Array&&(_.isFunction=function(obj){return"function"==typeof obj||!1}),_.isFinite=function(obj){return isFinite(obj)&&!isNaN(parseFloat(obj))},_.isNaN=function(obj){return _.isNumber(obj)&&obj!==+obj},_.isBoolean=function(obj){return obj===!0||obj===!1||"[object 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escapeMap={"&":"&amp;","<":"&lt;",">":"&gt;",'"':"&quot;","'":"&#x27;","`":"&#x60;"},unescapeMap=_.invert(escapeMap),createEscaper=function(map){var escaper=function(match){return map[match]},source="(?:"+_.keys(map).join("|")+")",testRegexp=RegExp(source),replaceRegexp=RegExp(source,"g");return function(string){return string=null==string?"":""+string,testRegexp.test(string)?string.replace(replaceRegexp,escaper):string}};_.escape=createEscaper(escapeMap),_.unescape=createEscaper(unescapeMap),_.result=function(object,property,fallback){var value=null==object?void 0:object[property];return void 0===value&&(value=fallback),_.isFunction(value)?value.call(object):value};var idCounter=0;_.uniqueId=function(prefix){var id=++idCounter+"";return prefix?prefix+id:id},_.templateSettings={evaluate:/<%([\s\S]+?)%>/g,interpolate:/<%=([\s\S]+?)%>/g,escape:/<%-([\s\S]+?)%>/g};var noMatch=/(.)^/,escapes={"'":"'","\\":"\\","\r":"r","\n":"n","\u2028":"u2028","\u2029":"u2029"},escaper=/\\|'|\r|\n|\u2028|\u2029/g,escapeChar=function(match){return"\\"+escapes[match]};_.template=function(text,settings,oldSettings){!settings&&oldSettings&&(settings=oldSettings),settings=_.defaults({},settings,_.templateSettings);var matcher=RegExp([(settings.escape||noMatch).source,(settings.interpolate||noMatch).source,(settings.evaluate||noMatch).source].join("|")+"|$","g"),index=0,source="__p+='";text.replace(matcher,function(match,escape,interpolate,evaluate,offset){return source+=text.slice(index,offset).replace(escaper,escapeChar),index=offset+match.length,escape?source+="'+\n((__t=("+escape+"))==null?'':_.escape(__t))+\n'":interpolate?source+="'+\n((__t=("+interpolate+"))==null?'':__t)+\n'":evaluate&&(source+="';\n"+evaluate+"\n__p+='"),match}),source+="';\n",settings.variable||(source="with(obj||{}){\n"+source+"}\n"),source="var __t,__p='',__j=Array.prototype.join,print=function(){__p+=__j.call(arguments,'');};\n"+source+"return __p;\n";try{var render=new Function(settings.variable||"obj","_",source)}catch(e){throw e.source=source,e}var template=function(data){return render.call(this,data,_)},argument=settings.variable||"obj";return template.source="function("+argument+"){\n"+source+"}",template},_.chain=function(obj){var instance=_(obj);return instance._chain=!0,instance};var result=function(instance,obj){return instance._chain?_(obj).chain():obj};_.mixin=function(obj){_.each(_.functions(obj),function(name){var func=_[name]=obj[name];_.prototype[name]=function(){var args=[this._wrapped];return push.apply(args,arguments),result(this,func.apply(_,args))}})},_.mixin(_),_.each(["pop","push","reverse","shift","sort","splice","unshift"],function(name){var method=ArrayProto[name];_.prototype[name]=function(){var obj=this._wrapped;return method.apply(obj,arguments),"shift"!==name&&"splice"!==name||0!==obj.length||delete obj[0],result(this,obj)}}),_.each(["concat","join","slice"],function(name){var method=ArrayProto[name];_.prototype[name]=function(){return result(this,method.apply(this._wrapped,arguments))}}),_.prototype.value=function(){return this._wrapped},_.prototype.valueOf=_.prototype.toJSON=_.prototype.value,_.prototype.toString=function(){return""+this._wrapped}}();var USE_TYPEDARRAY=!0,Zlib={Huffman:{},Util:{},CRC32:{}};Zlib.CompressionMethod={DEFLATE:8,RESERVED:15},Zlib.Zip=function(opt_params){opt_params=opt_params||{},this.files=[],this.comment=opt_params.comment,this.password},Zlib.Zip.CompressionMethod={STORE:0,DEFLATE:8},Zlib.Zip.OperatingSystem={MSDOS:0,UNIX:3,MACINTOSH:7},Zlib.Zip.Flags={ENCRYPT:1,DESCRIPTOR:8,UTF8:2048},Zlib.Zip.FileHeaderSignature=[80,75,1,2],Zlib.Zip.LocalFileHeaderSignature=[80,75,3,4],Zlib.Zip.CentralDirectorySignature=[80,75,5,6],Zlib.Zip.prototype.addFile=function(input,opt_params){opt_params=opt_params||{};var compressed,size=(opt_params.filename,input.length),crc32=0;if(USE_TYPEDARRAY&&input instanceof Array&&(input=new Uint8Array(input)),"number"!=typeof opt_params.compressionMethod&&(opt_params.compressionMethod=Zlib.Zip.CompressionMethod.DEFLATE),opt_params.compress)switch(opt_params.compressionMethod){case Zlib.Zip.CompressionMethod.STORE:break;case Zlib.Zip.CompressionMethod.DEFLATE:crc32=Zlib.CRC32.calc(input),input=this.deflateWithOption(input,opt_params),compressed=!0;break;default:throw new Error("unknown compression method:"+opt_params.compressionMethod)}this.files.push({buffer:input,option:opt_params,compressed:compressed,encrypted:!1,size:size,crc32:crc32})},Zlib.Zip.prototype.setPassword=function(password){this.password=password},Zlib.Zip.prototype.compress=function(){var file,output,op1,op2,op3,endOfCentralDirectorySize,offset,needVersion,flags,compressionMethod,date,crc32,size,plainSize,filenameLength,extraFieldLength,commentLength,filename,extraField,comment,buffer,tmp,key,i,il,j,jl,files=this.files,localFileSize=0,centralDirectorySize=0;for(i=0,il=files.length;i<il;++i){if(file=files[i],filenameLength=file.option.filename?file.option.filename.length:0,extraFieldLength=file.option.extraField?file.option.extraField.length:0,commentLength=file.option.comment?file.option.comment.length:0,!file.compressed)switch(file.crc32=Zlib.CRC32.calc(file.buffer),file.option.compressionMethod){case Zlib.Zip.CompressionMethod.STORE:break;case Zlib.Zip.CompressionMethod.DEFLATE:file.buffer=this.deflateWithOption(file.buffer,file.option),file.compressed=!0;break;default:throw new Error("unknown compression method:"+file.option.compressionMethod)}if(void 0!==file.option.password||void 0!==this.password){for(key=this.createEncryptionKey(file.option.password||this.password),buffer=file.buffer,USE_TYPEDARRAY?(tmp=new Uint8Array(buffer.length+12),tmp.set(buffer,12),buffer=tmp):buffer.unshift(0,0,0,0,0,0,0,0,0,0,0,0),j=0;j<12;++j)buffer[j]=this.encode(key,11===i?255&file.crc32:256*Math.random()|0);for(jl=buffer.length;j<jl;++j)buffer[j]=this.encode(key,buffer[j]);file.buffer=buffer}localFileSize+=30+filenameLength+file.buffer.length,centralDirectorySize+=46+filenameLength+commentLength}for(endOfCentralDirectorySize=22+(this.comment?this.comment.length:0),output=new(USE_TYPEDARRAY?Uint8Array:Array)(localFileSize+centralDirectorySize+endOfCentralDirectorySize),op1=0,op2=localFileSize,op3=op2+centralDirectorySize,i=0,il=files.length;i<il;++i){if(file=files[i],filenameLength=file.option.filename?file.option.filename.length:0,extraFieldLength=0,commentLength=file.option.comment?file.option.comment.length:0,offset=op1,output[op1++]=Zlib.Zip.LocalFileHeaderSignature[0],output[op1++]=Zlib.Zip.LocalFileHeaderSignature[1],output[op1++]=Zlib.Zip.LocalFileHeaderSignature[2],output[op1++]=Zlib.Zip.LocalFileHeaderSignature[3],output[op2++]=Zlib.Zip.FileHeaderSignature[0],output[op2++]=Zlib.Zip.FileHeaderSignature[1],output[op2++]=Zlib.Zip.FileHeaderSignature[2],output[op2++]=Zlib.Zip.FileHeaderSignature[3],needVersion=20,output[op2++]=255&needVersion,output[op2++]=file.option.os||Zlib.Zip.OperatingSystem.MSDOS,output[op1++]=output[op2++]=255&needVersion,output[op1++]=output[op2++]=needVersion>>8&255,flags=0,(file.option.password||this.password)&&(flags|=Zlib.Zip.Flags.ENCRYPT),output[op1++]=output[op2++]=255&flags,output[op1++]=output[op2++]=flags>>8&255,compressionMethod=file.option.compressionMethod,output[op1++]=output[op2++]=255&compressionMethod,output[op1++]=output[op2++]=compressionMethod>>8&255,date=file.option.date||new Date,output[op1++]=output[op2++]=(7&date.getMinutes())<<5|(date.getSeconds()/2|0),output[op1++]=output[op2++]=date.getHours()<<3|date.getMinutes()>>3,output[op1++]=output[op2++]=(date.getMonth()+1&7)<<5|date.getDate(),output[op1++]=output[op2++]=(date.getFullYear()-1980&127)<<1|date.getMonth()+1>>3,crc32=file.crc32,output[op1++]=output[op2++]=255&crc32,output[op1++]=output[op2++]=crc32>>8&255,output[op1++]=output[op2++]=crc32>>16&255,output[op1++]=output[op2++]=crc32>>24&255,size=file.buffer.length,output[op1++]=output[op2++]=255&size,output[op1++]=output[op2++]=size>>8&255,output[op1++]=output[op2++]=size>>16&255,output[op1++]=output[op2++]=size>>24&255,plainSize=file.size,output[op1++]=output[op2++]=255&plainSize,output[op1++]=output[op2++]=plainSize>>8&255,output[op1++]=output[op2++]=plainSize>>16&255,output[op1++]=output[op2++]=plainSize>>24&255,output[op1++]=output[op2++]=255&filenameLength,output[op1++]=output[op2++]=filenameLength>>8&255,output[op1++]=output[op2++]=255&extraFieldLength,output[op1++]=output[op2++]=extraFieldLength>>8&255,output[op2++]=255&commentLength,output[op2++]=commentLength>>8&255,output[op2++]=0,output[op2++]=0,output[op2++]=0,output[op2++]=0,output[op2++]=0,output[op2++]=0,output[op2++]=0,output[op2++]=0,output[op2++]=255&offset,output[op2++]=offset>>8&255,output[op2++]=offset>>16&255,output[op2++]=offset>>24&255,filename=file.option.filename)if(USE_TYPEDARRAY)output.set(filename,op1),output.set(filename,op2),op1+=filenameLength,op2+=filenameLength;else for(j=0;j<filenameLength;++j)output[op1++]=output[op2++]=filename[j];if(extraField=file.option.extraField)if(USE_TYPEDARRAY)output.set(extraField,op1),output.set(extraField,op2),op1+=extraFieldLength,op2+=extraFieldLength;else for(j=0;j<commentLength;++j)output[op1++]=output[op2++]=extraField[j];if(comment=file.option.comment)if(USE_TYPEDARRAY)output.set(comment,op2),op2+=commentLength;else for(j=0;j<commentLength;++j)output[op2++]=comment[j];if(USE_TYPEDARRAY)output.set(file.buffer,op1),op1+=file.buffer.length;else for(j=0,jl=file.buffer.length;j<jl;++j)output[op1++]=file.buffer[j]}if(output[op3++]=Zlib.Zip.CentralDirectorySignature[0],output[op3++]=Zlib.Zip.CentralDirectorySignature[1],output[op3++]=Zlib.Zip.CentralDirectorySignature[2],output[op3++]=Zlib.Zip.CentralDirectorySignature[3],output[op3++]=0,output[op3++]=0,output[op3++]=0,output[op3++]=0,output[op3++]=255&il,output[op3++]=il>>8&255,output[op3++]=255&il,output[op3++]=il>>8&255,output[op3++]=255&centralDirectorySize,output[op3++]=centralDirectorySize>>8&255,output[op3++]=centralDirectorySize>>16&255,output[op3++]=centralDirectorySize>>24&255,output[op3++]=255&localFileSize,output[op3++]=localFileSize>>8&255,output[op3++]=localFileSize>>16&255,output[op3++]=localFileSize>>24&255,commentLength=this.comment?this.comment.length:0,output[op3++]=255&commentLength,output[op3++]=commentLength>>8&255,this.comment)if(USE_TYPEDARRAY)output.set(this.comment,op3),op3+=commentLength;else for(j=0,jl=commentLength;j<jl;++j)output[op3++]=this.comment[j];return output},Zlib.Zip.prototype.deflateWithOption=function(input,opt_params){var deflator=new Zlib.RawDeflate(input,opt_params.deflateOption);return deflator.compress()},Zlib.Zip.prototype.getByte=function(key){var tmp=65535&key[2]|2;return tmp*(1^tmp)>>8&255},Zlib.Zip.prototype.encode=function(key,n){var tmp=this.getByte(key);return this.updateKeys(key,n),tmp^n},Zlib.Zip.prototype.updateKeys=function(key,n){key[0]=Zlib.CRC32.single(key[0],n),key[1]=(6681*(20173*(key[1]+(255&key[0]))>>>0)>>>0)+1>>>0,key[2]=Zlib.CRC32.single(key[2],key[1]>>>24)},Zlib.Zip.prototype.createEncryptionKey=function(password){var i,il,key=[305419896,591751049,878082192];for(USE_TYPEDARRAY&&(key=new Uint32Array(key)),i=0,il=password.length;i<il;++i)this.updateKeys(key,255&password[i]);return key},Zlib.Huffman.buildHuffmanTable=function(lengths){var size,table,bitLength,code,skip,reversed,rtemp,i,il,j,value,listSize=lengths.length,maxCodeLength=0,minCodeLength=Number.POSITIVE_INFINITY;for(i=0,il=listSize;i<il;++i)lengths[i]>maxCodeLength&&(maxCodeLength=lengths[i]),lengths[i]<minCodeLength&&(minCodeLength=lengths[i]);for(size=1<<maxCodeLength,table=new(USE_TYPEDARRAY?Uint32Array:Array)(size),bitLength=1,code=0,skip=2;bitLength<=maxCodeLength;){for(i=0;i<listSize;++i)if(lengths[i]===bitLength){for(reversed=0,rtemp=code,j=0;j<bitLength;++j)reversed=reversed<<1|1&rtemp,rtemp>>=1;for(value=bitLength<<16|i,j=reversed;j<size;j+=skip)table[j]=value;++code}++bitLength,code<<=1,skip<<=1}return[table,maxCodeLength,minCodeLength]};var ZLIB_RAW_INFLATE_BUFFER_SIZE=32768,buildHuffmanTable=Zlib.Huffman.buildHuffmanTable;Zlib.RawInflate=function(input,opt_params){switch(this.buffer,this.blocks=[],this.bufferSize=ZLIB_RAW_INFLATE_BUFFER_SIZE,this.totalpos=0,this.ip=0,this.bitsbuf=0,this.bitsbuflen=0,this.input=USE_TYPEDARRAY?new Uint8Array(input):input,this.output,this.op,this.bfinal=!1,this.bufferType=Zlib.RawInflate.BufferType.ADAPTIVE,this.resize=!1,!opt_params&&(opt_params={})||(opt_params.index&&(this.ip=opt_params.index),opt_params.bufferSize&&(this.bufferSize=opt_params.bufferSize),opt_params.bufferType&&(this.bufferType=opt_params.bufferType),opt_params.resize&&(this.resize=opt_params.resize)),this.bufferType){case Zlib.RawInflate.BufferType.BLOCK:this.op=Zlib.RawInflate.MaxBackwardLength,this.output=new(USE_TYPEDARRAY?Uint8Array:Array)(Zlib.RawInflate.MaxBackwardLength+this.bufferSize+Zlib.RawInflate.MaxCopyLength);break;case Zlib.RawInflate.BufferType.ADAPTIVE:this.op=0,this.output=new(USE_TYPEDARRAY?Uint8Array:Array)(this.bufferSize);break;default:throw new Error("invalid inflate mode")}},Zlib.RawInflate.BufferType={BLOCK:0,ADAPTIVE:1},Zlib.RawInflate.prototype.decompress=function(){for(;!this.bfinal;)this.parseBlock();switch(this.bufferType){case Zlib.RawInflate.BufferType.BLOCK:return this.concatBufferBlock();case Zlib.RawInflate.BufferType.ADAPTIVE:return this.concatBufferDynamic();default:throw new Error("invalid inflate mode")}},Zlib.RawInflate.MaxBackwardLength=32768,Zlib.RawInflate.MaxCopyLength=258,Zlib.RawInflate.Order=function(table){return USE_TYPEDARRAY?new Uint16Array(table):table}([16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15]),Zlib.RawInflate.LengthCodeTable=function(table){return USE_TYPEDARRAY?new Uint16Array(table):table}([3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,258,258]),Zlib.RawInflate.LengthExtraTable=function(table){return USE_TYPEDARRAY?new Uint8Array(table):table}([0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0,0,0]),Zlib.RawInflate.DistCodeTable=function(table){return USE_TYPEDARRAY?new Uint16Array(table):table}([1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577]),Zlib.RawInflate.DistExtraTable=function(table){return USE_TYPEDARRAY?new Uint8Array(table):table}([0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13]),Zlib.RawInflate.FixedLiteralLengthTable=function(table){return table}(function(){var i,il,lengths=new(USE_TYPEDARRAY?Uint8Array:Array)(288);for(i=0,il=lengths.length;i<il;++i)lengths[i]=i<=143?8:i<=255?9:i<=279?7:8;return buildHuffmanTable(lengths)}()),Zlib.RawInflate.FixedDistanceTable=function(table){return table}(function(){var i,il,lengths=new(USE_TYPEDARRAY?Uint8Array:Array)(30);for(i=0,il=lengths.length;i<il;++i)lengths[i]=5;return buildHuffmanTable(lengths)}()),Zlib.RawInflate.prototype.parseBlock=function(){var hdr=this.readBits(3);switch(1&hdr&&(this.bfinal=!0),hdr>>>=1){case 0:this.parseUncompressedBlock();break;case 1:this.parseFixedHuffmanBlock();break;case 2:this.parseDynamicHuffmanBlock();break;default:throw new Error("unknown BTYPE: "+hdr)}},Zlib.RawInflate.prototype.readBits=function(length){var octet,bitsbuf=this.bitsbuf,bitsbuflen=this.bitsbuflen,input=this.input,ip=this.ip,inputLength=input.length;if(ip+(length-bitsbuflen+7>>3)>=inputLength)throw new Error("input buffer is broken");for(;bitsbuflen<length;)bitsbuf|=input[ip++]<<bitsbuflen,bitsbuflen+=8;return octet=bitsbuf&(1<<length)-1,bitsbuf>>>=length,bitsbuflen-=length,this.bitsbuf=bitsbuf,this.bitsbuflen=bitsbuflen,this.ip=ip,octet},Zlib.RawInflate.prototype.readCodeByTable=function(table){for(var codeWithLength,codeLength,bitsbuf=this.bitsbuf,bitsbuflen=this.bitsbuflen,input=this.input,ip=this.ip,inputLength=input.length,codeTable=table[0],maxCodeLength=table[1];bitsbuflen<maxCodeLength&&!(ip>=inputLength);)bitsbuf|=input[ip++]<<bitsbuflen,bitsbuflen+=8;if(codeWithLength=codeTable[bitsbuf&(1<<maxCodeLength)-1],codeLength=codeWithLength>>>16,codeLength>bitsbuflen)throw new Error("invalid code length: "+codeLength);return this.bitsbuf=bitsbuf>>codeLength,this.bitsbuflen=bitsbuflen-codeLength,this.ip=ip,65535&codeWithLength},Zlib.RawInflate.prototype.parseUncompressedBlock=function(){var len,nlen,preCopy,input=this.input,ip=this.ip,output=this.output,op=this.op,inputLength=input.length,olength=output.length;if(this.bitsbuf=0,this.bitsbuflen=0,ip+1>=inputLength)throw new Error("invalid uncompressed block header: LEN");if(len=input[ip++]|input[ip++]<<8,ip+1>=inputLength)throw new Error("invalid uncompressed block header: NLEN");if(nlen=input[ip++]|input[ip++]<<8,len===~nlen)throw new Error("invalid uncompressed block header: length verify");if(ip+len>input.length)throw new Error("input buffer is broken");switch(this.bufferType){case Zlib.RawInflate.BufferType.BLOCK:for(;op+len>output.length;){if(preCopy=olength-op,len-=preCopy,USE_TYPEDARRAY)output.set(input.subarray(ip,ip+preCopy),op),op+=preCopy,ip+=preCopy;else for(;preCopy--;)output[op++]=input[ip++];this.op=op,output=this.expandBufferBlock(),op=this.op}break;case Zlib.RawInflate.BufferType.ADAPTIVE:for(;op+len>output.length;)output=this.expandBufferAdaptive({fixRatio:2});break;default:throw new Error("invalid inflate mode")}if(USE_TYPEDARRAY)output.set(input.subarray(ip,ip+len),op),op+=len,ip+=len;else for(;len--;)output[op++]=input[ip++];this.ip=ip,this.op=op,this.output=output},Zlib.RawInflate.prototype.parseFixedHuffmanBlock=function(){switch(this.bufferType){case Zlib.RawInflate.BufferType.ADAPTIVE:this.decodeHuffmanAdaptive(Zlib.RawInflate.FixedLiteralLengthTable,Zlib.RawInflate.FixedDistanceTable);break;case Zlib.RawInflate.BufferType.BLOCK:this.decodeHuffmanBlock(Zlib.RawInflate.FixedLiteralLengthTable,Zlib.RawInflate.FixedDistanceTable);break;default:throw new Error("invalid inflate mode")}},Zlib.RawInflate.prototype.parseDynamicHuffmanBlock=function(){var codeLengthsTable,litlenTable,distTable,lengthTable,code,prev,repeat,i,il,hlit=this.readBits(5)+257,hdist=this.readBits(5)+1,hclen=this.readBits(4)+4,codeLengths=new(USE_TYPEDARRAY?Uint8Array:Array)(Zlib.RawInflate.Order.length);for(i=0;i<hclen;++i)codeLengths[Zlib.RawInflate.Order[i]]=this.readBits(3);if(!USE_TYPEDARRAY)for(i=hclen,hclen=codeLengths.length;i<hclen;++i)codeLengths[Zlib.RawInflate.Order[i]]=0;for(codeLengthsTable=buildHuffmanTable(codeLengths),
+lengthTable=new(USE_TYPEDARRAY?Uint8Array:Array)(hlit+hdist),i=0,il=hlit+hdist;i<il;)switch(code=this.readCodeByTable(codeLengthsTable)){case 16:for(repeat=3+this.readBits(2);repeat--;)lengthTable[i++]=prev;break;case 17:for(repeat=3+this.readBits(3);repeat--;)lengthTable[i++]=0;prev=0;break;case 18:for(repeat=11+this.readBits(7);repeat--;)lengthTable[i++]=0;prev=0;break;default:lengthTable[i++]=code,prev=code}switch(litlenTable=buildHuffmanTable(USE_TYPEDARRAY?lengthTable.subarray(0,hlit):lengthTable.slice(0,hlit)),distTable=buildHuffmanTable(USE_TYPEDARRAY?lengthTable.subarray(hlit):lengthTable.slice(hlit)),this.bufferType){case Zlib.RawInflate.BufferType.ADAPTIVE:this.decodeHuffmanAdaptive(litlenTable,distTable);break;case Zlib.RawInflate.BufferType.BLOCK:this.decodeHuffmanBlock(litlenTable,distTable);break;default:throw new Error("invalid inflate mode")}},Zlib.RawInflate.prototype.decodeHuffmanBlock=function(litlen,dist){var output=this.output,op=this.op;this.currentLitlenTable=litlen;for(var code,ti,codeDist,codeLength,olength=output.length-Zlib.RawInflate.MaxCopyLength,lengthCodeTable=Zlib.RawInflate.LengthCodeTable,lengthExtraTable=Zlib.RawInflate.LengthExtraTable,distCodeTable=Zlib.RawInflate.DistCodeTable,distExtraTable=Zlib.RawInflate.DistExtraTable;256!==(code=this.readCodeByTable(litlen));)if(code<256)op>=olength&&(this.op=op,output=this.expandBufferBlock(),op=this.op),output[op++]=code;else for(ti=code-257,codeLength=lengthCodeTable[ti],lengthExtraTable[ti]>0&&(codeLength+=this.readBits(lengthExtraTable[ti])),code=this.readCodeByTable(dist),codeDist=distCodeTable[code],distExtraTable[code]>0&&(codeDist+=this.readBits(distExtraTable[code])),op>=olength&&(this.op=op,output=this.expandBufferBlock(),op=this.op);codeLength--;)output[op]=output[op++-codeDist];for(;this.bitsbuflen>=8;)this.bitsbuflen-=8,this.ip--;this.op=op},Zlib.RawInflate.prototype.decodeHuffmanAdaptive=function(litlen,dist){var output=this.output,op=this.op;this.currentLitlenTable=litlen;for(var code,ti,codeDist,codeLength,olength=output.length,lengthCodeTable=Zlib.RawInflate.LengthCodeTable,lengthExtraTable=Zlib.RawInflate.LengthExtraTable,distCodeTable=Zlib.RawInflate.DistCodeTable,distExtraTable=Zlib.RawInflate.DistExtraTable;256!==(code=this.readCodeByTable(litlen));)if(code<256)op>=olength&&(output=this.expandBufferAdaptive(),olength=output.length),output[op++]=code;else for(ti=code-257,codeLength=lengthCodeTable[ti],lengthExtraTable[ti]>0&&(codeLength+=this.readBits(lengthExtraTable[ti])),code=this.readCodeByTable(dist),codeDist=distCodeTable[code],distExtraTable[code]>0&&(codeDist+=this.readBits(distExtraTable[code])),op+codeLength>olength&&(output=this.expandBufferAdaptive(),olength=output.length);codeLength--;)output[op]=output[op++-codeDist];for(;this.bitsbuflen>=8;)this.bitsbuflen-=8,this.ip--;this.op=op},Zlib.RawInflate.prototype.expandBufferBlock=function(opt_param){var i,il,buffer=new(USE_TYPEDARRAY?Uint8Array:Array)(this.op-Zlib.RawInflate.MaxBackwardLength),backward=this.op-Zlib.RawInflate.MaxBackwardLength,output=this.output;if(USE_TYPEDARRAY)buffer.set(output.subarray(Zlib.RawInflate.MaxBackwardLength,buffer.length));else for(i=0,il=buffer.length;i<il;++i)buffer[i]=output[i+Zlib.RawInflate.MaxBackwardLength];if(this.blocks.push(buffer),this.totalpos+=buffer.length,USE_TYPEDARRAY)output.set(output.subarray(backward,backward+Zlib.RawInflate.MaxBackwardLength));else for(i=0;i<Zlib.RawInflate.MaxBackwardLength;++i)output[i]=output[backward+i];return this.op=Zlib.RawInflate.MaxBackwardLength,output},Zlib.RawInflate.prototype.expandBufferAdaptive=function(opt_param){var buffer,maxHuffCode,newSize,maxInflateSize,ratio=this.input.length/this.ip+1|0,input=this.input,output=this.output;return opt_param&&("number"==typeof opt_param.fixRatio&&(ratio=opt_param.fixRatio),"number"==typeof opt_param.addRatio&&(ratio+=opt_param.addRatio)),ratio<2?(maxHuffCode=(input.length-this.ip)/this.currentLitlenTable[2],maxInflateSize=maxHuffCode/2*258|0,newSize=maxInflateSize<output.length?output.length+maxInflateSize:output.length<<1):newSize=output.length*ratio,USE_TYPEDARRAY?(buffer=new Uint8Array(newSize),buffer.set(output)):buffer=output,this.output=buffer,this.output},Zlib.RawInflate.prototype.concatBufferBlock=function(){var block,i,il,j,jl,pos=0,limit=this.totalpos+(this.op-Zlib.RawInflate.MaxBackwardLength),output=this.output,blocks=this.blocks,buffer=new(USE_TYPEDARRAY?Uint8Array:Array)(limit);if(0===blocks.length)return USE_TYPEDARRAY?this.output.subarray(Zlib.RawInflate.MaxBackwardLength,this.op):this.output.slice(Zlib.RawInflate.MaxBackwardLength,this.op);for(i=0,il=blocks.length;i<il;++i)for(block=blocks[i],j=0,jl=block.length;j<jl;++j)buffer[pos++]=block[j];for(i=Zlib.RawInflate.MaxBackwardLength,il=this.op;i<il;++i)buffer[pos++]=output[i];return this.blocks=[],this.buffer=buffer,this.buffer},Zlib.RawInflate.prototype.concatBufferDynamic=function(){var buffer,op=this.op;return USE_TYPEDARRAY?this.resize?(buffer=new Uint8Array(op),buffer.set(this.output.subarray(0,op))):buffer=this.output.subarray(0,op):(this.output.length>op&&(this.output.length=op),buffer=this.output),this.buffer=buffer,this.buffer};var buildHuffmanTable=Zlib.Huffman.buildHuffmanTable;Zlib.RawInflateStream=function(input,ip,opt_buffersize){this.blocks=[],this.bufferSize=opt_buffersize?opt_buffersize:ZLIB_STREAM_RAW_INFLATE_BUFFER_SIZE,this.totalpos=0,this.ip=void 0===ip?0:ip,this.bitsbuf=0,this.bitsbuflen=0,this.input=USE_TYPEDARRAY?new Uint8Array(input):input,this.output=new(USE_TYPEDARRAY?Uint8Array:Array)(this.bufferSize),this.op=0,this.bfinal=!1,this.blockLength,this.resize=!1,this.litlenTable,this.distTable,this.sp=0,this.status=Zlib.RawInflateStream.Status.INITIALIZED,this.ip_,this.bitsbuflen_,this.bitsbuf_},Zlib.RawInflateStream.BlockType={UNCOMPRESSED:0,FIXED:1,DYNAMIC:2},Zlib.RawInflateStream.Status={INITIALIZED:0,BLOCK_HEADER_START:1,BLOCK_HEADER_END:2,BLOCK_BODY_START:3,BLOCK_BODY_END:4,DECODE_BLOCK_START:5,DECODE_BLOCK_END:6},Zlib.RawInflateStream.prototype.decompress=function(newInput,ip){var stop=!1;for(void 0!==newInput&&(this.input=newInput),void 0!==ip&&(this.ip=ip);!stop;)switch(this.status){case Zlib.RawInflateStream.Status.INITIALIZED:case Zlib.RawInflateStream.Status.BLOCK_HEADER_START:this.readBlockHeader()<0&&(stop=!0);break;case Zlib.RawInflateStream.Status.BLOCK_HEADER_END:case Zlib.RawInflateStream.Status.BLOCK_BODY_START:switch(this.currentBlockType){case Zlib.RawInflateStream.BlockType.UNCOMPRESSED:this.readUncompressedBlockHeader()<0&&(stop=!0);break;case Zlib.RawInflateStream.BlockType.FIXED:this.parseFixedHuffmanBlock()<0&&(stop=!0);break;case Zlib.RawInflateStream.BlockType.DYNAMIC:this.parseDynamicHuffmanBlock()<0&&(stop=!0)}break;case Zlib.RawInflateStream.Status.BLOCK_BODY_END:case Zlib.RawInflateStream.Status.DECODE_BLOCK_START:switch(this.currentBlockType){case Zlib.RawInflateStream.BlockType.UNCOMPRESSED:this.parseUncompressedBlock()<0&&(stop=!0);break;case Zlib.RawInflateStream.BlockType.FIXED:case Zlib.RawInflateStream.BlockType.DYNAMIC:this.decodeHuffman()<0&&(stop=!0)}break;case Zlib.RawInflateStream.Status.DECODE_BLOCK_END:this.bfinal?stop=!0:this.status=Zlib.RawInflateStream.Status.INITIALIZED}return this.concatBuffer()},Zlib.RawInflateStream.MaxBackwardLength=32768,Zlib.RawInflateStream.MaxCopyLength=258,Zlib.RawInflateStream.Order=function(table){return USE_TYPEDARRAY?new Uint16Array(table):table}([16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15]),Zlib.RawInflateStream.LengthCodeTable=function(table){return USE_TYPEDARRAY?new Uint16Array(table):table}([3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,258,258]),Zlib.RawInflateStream.LengthExtraTable=function(table){return USE_TYPEDARRAY?new Uint8Array(table):table}([0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0,0,0]),Zlib.RawInflateStream.DistCodeTable=function(table){return USE_TYPEDARRAY?new Uint16Array(table):table}([1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577]),Zlib.RawInflateStream.DistExtraTable=function(table){return USE_TYPEDARRAY?new Uint8Array(table):table}([0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13]),Zlib.RawInflateStream.FixedLiteralLengthTable=function(table){return table}(function(){var i,il,lengths=new(USE_TYPEDARRAY?Uint8Array:Array)(288);for(i=0,il=lengths.length;i<il;++i)lengths[i]=i<=143?8:i<=255?9:i<=279?7:8;return buildHuffmanTable(lengths)}()),Zlib.RawInflateStream.FixedDistanceTable=function(table){return table}(function(){var i,il,lengths=new(USE_TYPEDARRAY?Uint8Array:Array)(30);for(i=0,il=lengths.length;i<il;++i)lengths[i]=5;return buildHuffmanTable(lengths)}()),Zlib.RawInflateStream.prototype.readBlockHeader=function(){var hdr;if(this.status=Zlib.RawInflateStream.Status.BLOCK_HEADER_START,this.save_(),(hdr=this.readBits(3))<0)return this.restore_(),-1;switch(1&hdr&&(this.bfinal=!0),hdr>>>=1){case 0:this.currentBlockType=Zlib.RawInflateStream.BlockType.UNCOMPRESSED;break;case 1:this.currentBlockType=Zlib.RawInflateStream.BlockType.FIXED;break;case 2:this.currentBlockType=Zlib.RawInflateStream.BlockType.DYNAMIC;break;default:throw new Error("unknown BTYPE: "+hdr)}this.status=Zlib.RawInflateStream.Status.BLOCK_HEADER_END},Zlib.RawInflateStream.prototype.readBits=function(length){for(var octet,bitsbuf=this.bitsbuf,bitsbuflen=this.bitsbuflen,input=this.input,ip=this.ip;bitsbuflen<length;){if(input.length<=ip)return-1;octet=input[ip++],bitsbuf|=octet<<bitsbuflen,bitsbuflen+=8}return octet=bitsbuf&(1<<length)-1,bitsbuf>>>=length,bitsbuflen-=length,this.bitsbuf=bitsbuf,this.bitsbuflen=bitsbuflen,this.ip=ip,octet},Zlib.RawInflateStream.prototype.readCodeByTable=function(table){for(var octet,codeWithLength,codeLength,bitsbuf=this.bitsbuf,bitsbuflen=this.bitsbuflen,input=this.input,ip=this.ip,codeTable=table[0],maxCodeLength=table[1];bitsbuflen<maxCodeLength;){if(input.length<=ip)return-1;octet=input[ip++],bitsbuf|=octet<<bitsbuflen,bitsbuflen+=8}if(codeWithLength=codeTable[bitsbuf&(1<<maxCodeLength)-1],codeLength=codeWithLength>>>16,codeLength>bitsbuflen)throw new Error("invalid code length: "+codeLength);return this.bitsbuf=bitsbuf>>codeLength,this.bitsbuflen=bitsbuflen-codeLength,this.ip=ip,65535&codeWithLength},Zlib.RawInflateStream.prototype.readUncompressedBlockHeader=function(){var len,nlen,input=this.input,ip=this.ip;if(this.status=Zlib.RawInflateStream.Status.BLOCK_BODY_START,ip+4>=input.length)return-1;if(len=input[ip++]|input[ip++]<<8,nlen=input[ip++]|input[ip++]<<8,len===~nlen)throw new Error("invalid uncompressed block header: length verify");this.bitsbuf=0,this.bitsbuflen=0,this.ip=ip,this.blockLength=len,this.status=Zlib.RawInflateStream.Status.BLOCK_BODY_END},Zlib.RawInflateStream.prototype.parseUncompressedBlock=function(){var input=this.input,ip=this.ip,output=this.output,op=this.op,len=this.blockLength;for(this.status=Zlib.RawInflateStream.Status.DECODE_BLOCK_START;len--;){if(op===output.length&&(output=this.expandBuffer({fixRatio:2})),ip>=input.length)return this.ip=ip,this.op=op,this.blockLength=len+1,-1;output[op++]=input[ip++]}return len<0&&(this.status=Zlib.RawInflateStream.Status.DECODE_BLOCK_END),this.ip=ip,this.op=op,0},Zlib.RawInflateStream.prototype.parseFixedHuffmanBlock=function(){return this.status=Zlib.RawInflateStream.Status.BLOCK_BODY_START,this.litlenTable=Zlib.RawInflateStream.FixedLiteralLengthTable,this.distTable=Zlib.RawInflateStream.FixedDistanceTable,this.status=Zlib.RawInflateStream.Status.BLOCK_BODY_END,0},Zlib.RawInflateStream.prototype.save_=function(){this.ip_=this.ip,this.bitsbuflen_=this.bitsbuflen,this.bitsbuf_=this.bitsbuf},Zlib.RawInflateStream.prototype.restore_=function(){this.ip=this.ip_,this.bitsbuflen=this.bitsbuflen_,this.bitsbuf=this.bitsbuf_},Zlib.RawInflateStream.prototype.parseDynamicHuffmanBlock=function(){function parseDynamicHuffmanBlockImpl(){var bits,code,repeat,lengthTable,i,il,prev=0;for(i=0;i<hclen;++i){if((bits=this.readBits(3))<0)throw new Error("not enough input");codeLengths[Zlib.RawInflateStream.Order[i]]=bits}for(codeLengthsTable=buildHuffmanTable(codeLengths),lengthTable=new(USE_TYPEDARRAY?Uint8Array:Array)(hlit+hdist),i=0,il=hlit+hdist;i<il;){if(code=this.readCodeByTable(codeLengthsTable),code<0)throw new Error("not enough input");switch(code){case 16:if((bits=this.readBits(2))<0)throw new Error("not enough input");for(repeat=3+bits;repeat--;)lengthTable[i++]=prev;break;case 17:if((bits=this.readBits(3))<0)throw new Error("not enough input");for(repeat=3+bits;repeat--;)lengthTable[i++]=0;prev=0;break;case 18:if((bits=this.readBits(7))<0)throw new Error("not enough input");for(repeat=11+bits;repeat--;)lengthTable[i++]=0;prev=0;break;default:lengthTable[i++]=code,prev=code}}litlenLengths=new(USE_TYPEDARRAY?Uint8Array:Array)(hlit),distLengths=new(USE_TYPEDARRAY?Uint8Array:Array)(hdist),this.litlenTable=buildHuffmanTable(USE_TYPEDARRAY?lengthTable.subarray(0,hlit):lengthTable.slice(0,hlit)),this.distTable=buildHuffmanTable(USE_TYPEDARRAY?lengthTable.subarray(hlit):lengthTable.slice(hlit))}var hlit,hdist,hclen,codeLengthsTable,litlenLengths,distLengths,codeLengths=new(USE_TYPEDARRAY?Uint8Array:Array)(Zlib.RawInflateStream.Order.length);if(this.status=Zlib.RawInflateStream.Status.BLOCK_BODY_START,this.save_(),hlit=this.readBits(5)+257,hdist=this.readBits(5)+1,hclen=this.readBits(4)+4,hlit<0||hdist<0||hclen<0)return this.restore_(),-1;try{parseDynamicHuffmanBlockImpl.call(this)}catch(e){return this.restore_(),-1}return this.status=Zlib.RawInflateStream.Status.BLOCK_BODY_END,0},Zlib.RawInflateStream.prototype.decodeHuffman=function(){var code,ti,codeDist,codeLength,bits,output=this.output,op=this.op,litlen=this.litlenTable,dist=this.distTable,olength=output.length;for(this.status=Zlib.RawInflateStream.Status.DECODE_BLOCK_START;;){if(this.save_(),code=this.readCodeByTable(litlen),code<0)return this.op=op,this.restore_(),-1;if(256===code)break;if(code<256)op===olength&&(output=this.expandBuffer(),olength=output.length),output[op++]=code;else{if(ti=code-257,codeLength=Zlib.RawInflateStream.LengthCodeTable[ti],Zlib.RawInflateStream.LengthExtraTable[ti]>0){if(bits=this.readBits(Zlib.RawInflateStream.LengthExtraTable[ti]),bits<0)return this.op=op,this.restore_(),-1;codeLength+=bits}if(code=this.readCodeByTable(dist),code<0)return this.op=op,this.restore_(),-1;if(codeDist=Zlib.RawInflateStream.DistCodeTable[code],Zlib.RawInflateStream.DistExtraTable[code]>0){if(bits=this.readBits(Zlib.RawInflateStream.DistExtraTable[code]),bits<0)return this.op=op,this.restore_(),-1;codeDist+=bits}for(op+codeLength>=olength&&(output=this.expandBuffer(),olength=output.length);codeLength--;)output[op]=output[op++-codeDist];if(this.ip===this.input.length)return this.op=op,-1}}for(;this.bitsbuflen>=8;)this.bitsbuflen-=8,this.ip--;this.op=op,this.status=Zlib.RawInflateStream.Status.DECODE_BLOCK_END},Zlib.RawInflateStream.prototype.expandBuffer=function(opt_param){var buffer,maxHuffCode,newSize,maxInflateSize,ratio=this.input.length/this.ip+1|0,input=this.input,output=this.output;return opt_param&&("number"==typeof opt_param.fixRatio&&(ratio=opt_param.fixRatio),"number"==typeof opt_param.addRatio&&(ratio+=opt_param.addRatio)),ratio<2?(maxHuffCode=(input.length-this.ip)/this.litlenTable[2],maxInflateSize=maxHuffCode/2*258|0,newSize=maxInflateSize<output.length?output.length+maxInflateSize:output.length<<1):newSize=output.length*ratio,USE_TYPEDARRAY?(buffer=new Uint8Array(newSize),buffer.set(output)):buffer=output,this.output=buffer,this.output},Zlib.RawInflateStream.prototype.concatBuffer=function(){var buffer,tmp,op=this.op;return buffer=this.resize?USE_TYPEDARRAY?new Uint8Array(this.output.subarray(this.sp,op)):this.output.slice(this.sp,op):USE_TYPEDARRAY?this.output.subarray(this.sp,op):this.output.slice(this.sp,op),this.sp=op,op>Zlib.RawInflateStream.MaxBackwardLength+this.bufferSize&&(this.op=this.sp=Zlib.RawInflateStream.MaxBackwardLength,USE_TYPEDARRAY?(tmp=this.output,this.output=new Uint8Array(this.bufferSize+Zlib.RawInflateStream.MaxBackwardLength),this.output.set(tmp.subarray(op-Zlib.RawInflateStream.MaxBackwardLength,op))):this.output=this.output.slice(op-Zlib.RawInflateStream.MaxBackwardLength)),buffer},Zlib.Inflate=function(input,opt_params){var cmf,flg;switch(this.input=input,this.ip=0,this.rawinflate,this.verify,!opt_params&&(opt_params={})||(opt_params.index&&(this.ip=opt_params.index),opt_params.verify&&(this.verify=opt_params.verify)),cmf=input[this.ip++],flg=input[this.ip++],15&cmf){case Zlib.CompressionMethod.DEFLATE:this.method=Zlib.CompressionMethod.DEFLATE;break;default:throw new Error("unsupported compression method")}if(((cmf<<8)+flg)%31!==0)throw new Error("invalid fcheck flag:"+((cmf<<8)+flg)%31);if(32&flg)throw new Error("fdict flag is not supported");this.rawinflate=new Zlib.RawInflate(input,{index:this.ip,bufferSize:opt_params.bufferSize,bufferType:opt_params.bufferType,resize:opt_params.resize})},Zlib.Inflate.BufferType=Zlib.RawInflate.BufferType,Zlib.Inflate.prototype.decompress=function(){var buffer,adler32,input=this.input;if(buffer=this.rawinflate.decompress(),this.ip=this.rawinflate.ip,this.verify&&(adler32=(input[this.ip++]<<24|input[this.ip++]<<16|input[this.ip++]<<8|input[this.ip++])>>>0,adler32!==Zlib.Adler32(buffer)))throw new Error("invalid adler-32 checksum");return buffer},Zlib.InflateStream=function(input){this.input=void 0===input?new(USE_TYPEDARRAY?Uint8Array:Array):input,this.ip=0,this.rawinflate=new Zlib.RawInflateStream(this.input,this.ip),this.method,this.output=this.rawinflate.output},Zlib.InflateStream.prototype.decompress=function(input){var buffer;if(void 0!==input)if(USE_TYPEDARRAY){var tmp=new Uint8Array(this.input.length+input.length);tmp.set(this.input,0),tmp.set(input,this.input.length),this.input=tmp}else this.input=this.input.concat(input);return void 0===this.method&&this.readHeader()<0?new(USE_TYPEDARRAY?Uint8Array:Array):(buffer=this.rawinflate.decompress(this.input,this.ip),0!==this.rawinflate.ip&&(this.input=USE_TYPEDARRAY?this.input.subarray(this.rawinflate.ip):this.input.slice(this.rawinflate.ip),this.ip=0),buffer)},Zlib.InflateStream.prototype.readHeader=function(){var ip=this.ip,input=this.input,cmf=input[ip++],flg=input[ip++];if(void 0===cmf||void 0===flg)return-1;switch(15&cmf){case Zlib.CompressionMethod.DEFLATE:this.method=Zlib.CompressionMethod.DEFLATE;break;default:throw new Error("unsupported compression method")}if(((cmf<<8)+flg)%31!==0)throw new Error("invalid fcheck flag:"+((cmf<<8)+flg)%31);if(32&flg)throw new Error("fdict flag is not supported");this.ip=ip},Zlib.Gunzip=function(input,opt_params){this.input=input,this.ip=0,this.member=[],this.decompressed=!1},Zlib.Gunzip.prototype.getMembers=function(){return this.decompressed||this.decompress(),this.member.slice()},Zlib.Gunzip.prototype.decompress=function(){for(var il=this.input.length;this.ip<il;)this.decodeMember();return this.decompressed=!0,this.concatMember()},Zlib.Gunzip.prototype.decodeMember=function(){var isize,rawinflate,inflated,inflen,c,ci,str,mtime,crc32,member=new Zlib.GunzipMember,input=this.input,ip=this.ip;if(member.id1=input[ip++],member.id2=input[ip++],31!==member.id1||139!==member.id2)throw new Error("invalid file signature:"+member.id1+","+member.id2);switch(member.cm=input[ip++],member.cm){case 8:break;default:throw new Error("unknown compression method: "+member.cm)}if(member.flg=input[ip++],mtime=input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24,member.mtime=new Date(1e3*mtime),member.xfl=input[ip++],member.os=input[ip++],(member.flg&Zlib.Gzip.FlagsMask.FEXTRA)>0&&(member.xlen=input[ip++]|input[ip++]<<8,ip=this.decodeSubField(ip,member.xlen)),(member.flg&Zlib.Gzip.FlagsMask.FNAME)>0){for(str=[],ci=0;(c=input[ip++])>0;)str[ci++]=String.fromCharCode(c);member.name=str.join("")}if((member.flg&Zlib.Gzip.FlagsMask.FCOMMENT)>0){for(str=[],ci=0;(c=input[ip++])>0;)str[ci++]=String.fromCharCode(c);member.comment=str.join("")}if((member.flg&Zlib.Gzip.FlagsMask.FHCRC)>0&&(member.crc16=65535&Zlib.CRC32.calc(input,0,ip),member.crc16!==(input[ip++]|input[ip++]<<8)))throw new Error("invalid header crc16");if(isize=input[input.length-4]|input[input.length-3]<<8|input[input.length-2]<<16|input[input.length-1]<<24,input.length-ip-4-4<512*isize&&(inflen=isize),rawinflate=new Zlib.RawInflate(input,{index:ip,bufferSize:inflen}),member.data=inflated=rawinflate.decompress(),ip=rawinflate.ip,member.crc32=crc32=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,Zlib.CRC32.calc(inflated)!==crc32)throw new Error("invalid CRC-32 checksum: 0x"+Zlib.CRC32.calc(inflated).toString(16)+" / 0x"+crc32.toString(16));if(member.isize=isize=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,(4294967295&inflated.length)!==isize)throw new Error("invalid input size: "+(4294967295&inflated.length)+" / "+isize);this.member.push(member),this.ip=ip},Zlib.Gunzip.prototype.decodeSubField=function(ip,length){return ip+length},Zlib.Gunzip.prototype.concatMember=function(){var i,il,buffer,member=this.member,p=0,size=0;for(i=0,il=member.length;i<il;++i)size+=member[i].data.length;if(USE_TYPEDARRAY)for(buffer=new Uint8Array(size),i=0;i<il;++i)buffer.set(member[i].data,p),p+=member[i].data.length;else{for(buffer=[],i=0;i<il;++i)buffer[i]=member[i].data;buffer=Array.prototype.concat.apply([],buffer)}return buffer},Zlib.GunzipMember=function(){this.id1,this.id2,this.cm,this.flg,this.mtime,this.xfl,this.os,this.crc16,this.xlen,this.crc32,this.isize,this.name,this.comment,this.data},Zlib.GunzipMember.prototype.getName=function(){return this.name},Zlib.GunzipMember.prototype.getData=function(){return this.data},Zlib.GunzipMember.prototype.getMtime=function(){return this.mtime},Zlib.Gzip=function(input,opt_params){this.input=input,this.ip=0,this.output,this.op=0,this.flags={},this.filename,this.comment,this.deflateOptions,opt_params&&(opt_params.flags&&(this.flags=opt_params.flags),"string"==typeof opt_params.filename&&(this.filename=opt_params.filename),"string"==typeof opt_params.comment&&(this.comment=opt_params.comment),opt_params.deflateOptions&&(this.deflateOptions=opt_params.deflateOptions)),this.deflateOptions||(this.deflateOptions={})},Zlib.Gzip.DefaultBufferSize=32768,Zlib.Gzip.prototype.compress=function(){var flg,mtime,crc16,crc32,rawdeflate,c,i,il,output=new(USE_TYPEDARRAY?Uint8Array:Array)(Zlib.Gzip.DefaultBufferSize),op=0,input=this.input,ip=this.ip,filename=this.filename,comment=this.comment;if(output[op++]=31,output[op++]=139,output[op++]=8,flg=0,this.flags.fname&&(flg|=Zlib.Gzip.FlagsMask.FNAME),this.flags.fcomment&&(flg|=Zlib.Gzip.FlagsMask.FCOMMENT),this.flags.fhcrc&&(flg|=Zlib.Gzip.FlagsMask.FHCRC),output[op++]=flg,mtime=(Date.now?Date.now():+new Date)/1e3|0,output[op++]=255&mtime,output[op++]=mtime>>>8&255,output[op++]=mtime>>>16&255,output[op++]=mtime>>>24&255,output[op++]=0,output[op++]=Zlib.Gzip.OperatingSystem.UNKNOWN,void 0!==this.flags.fname){for(i=0,il=filename.length;i<il;++i)c=filename.charCodeAt(i),c>255&&(output[op++]=c>>>8&255),output[op++]=255&c;output[op++]=0}if(this.flags.comment){for(i=0,il=comment.length;i<il;++i)c=comment.charCodeAt(i),c>255&&(output[op++]=c>>>8&255),output[op++]=255&c;output[op++]=0}return this.flags.fhcrc&&(crc16=65535&Zlib.CRC32.calc(output,0,op),output[op++]=255&crc16,output[op++]=crc16>>>8&255),this.deflateOptions.outputBuffer=output,this.deflateOptions.outputIndex=op,rawdeflate=new Zlib.RawDeflate(input,this.deflateOptions),output=rawdeflate.compress(),op=rawdeflate.op,USE_TYPEDARRAY&&(op+8>output.buffer.byteLength?(this.output=new Uint8Array(op+8),this.output.set(new Uint8Array(output.buffer)),output=this.output):output=new Uint8Array(output.buffer)),crc32=Zlib.CRC32.calc(input),output[op++]=255&crc32,output[op++]=crc32>>>8&255,output[op++]=crc32>>>16&255,output[op++]=crc32>>>24&255,il=input.length,output[op++]=255&il,output[op++]=il>>>8&255,output[op++]=il>>>16&255,output[op++]=il>>>24&255,this.ip=ip,USE_TYPEDARRAY&&op<output.length&&(this.output=output=output.subarray(0,op)),output},Zlib.Gzip.OperatingSystem={FAT:0,AMIGA:1,VMS:2,UNIX:3,VM_CMS:4,ATARI_TOS:5,HPFS:6,MACINTOSH:7,Z_SYSTEM:8,CP_M:9,TOPS_20:10,NTFS:11,QDOS:12,ACORN_RISCOS:13,UNKNOWN:255},Zlib.Gzip.FlagsMask={FTEXT:1,FHCRC:2,FEXTRA:4,FNAME:8,FCOMMENT:16},Zlib.Heap=function(length){this.buffer=new(USE_TYPEDARRAY?Uint16Array:Array)(2*length),this.length=0},Zlib.Heap.prototype.getParent=function(index){return 2*((index-2)/4|0)},Zlib.Heap.prototype.getChild=function(index){return 2*index+2},Zlib.Heap.prototype.push=function(index,value){var current,parent,swap,heap=this.buffer;for(current=this.length,heap[this.length++]=value,heap[this.length++]=index;current>0&&(parent=this.getParent(current),heap[current]>heap[parent]);)swap=heap[current],heap[current]=heap[parent],heap[parent]=swap,swap=heap[current+1],heap[current+1]=heap[parent+1],heap[parent+1]=swap,current=parent;return this.length},Zlib.Heap.prototype.pop=function(){var index,value,swap,current,parent,heap=this.buffer;for(value=heap[0],index=heap[1],this.length-=2,heap[0]=heap[this.length],heap[1]=heap[this.length+1],parent=0;;){if(current=this.getChild(parent),current>=this.length)break;if(current+2<this.length&&heap[current+2]>heap[current]&&(current+=2),!(heap[current]>heap[parent]))break;swap=heap[parent],heap[parent]=heap[current],heap[current]=swap,swap=heap[parent+1],heap[parent+1]=heap[current+1],heap[current+1]=swap,parent=current}return{index:index,value:value,length:this.length}},Zlib.RawDeflate=function(input,opt_params){this.compressionType=Zlib.RawDeflate.CompressionType.DYNAMIC,this.lazy=0,this.freqsLitLen,this.freqsDist,this.input=USE_TYPEDARRAY&&input instanceof Array?new Uint8Array(input):input,this.output,this.op=0,opt_params&&(opt_params.lazy&&(this.lazy=opt_params.lazy),"number"==typeof opt_params.compressionType&&(this.compressionType=opt_params.compressionType),opt_params.outputBuffer&&(this.output=USE_TYPEDARRAY&&opt_params.outputBuffer instanceof Array?new Uint8Array(opt_params.outputBuffer):opt_params.outputBuffer),"number"==typeof opt_params.outputIndex&&(this.op=opt_params.outputIndex)),this.output||(this.output=new(USE_TYPEDARRAY?Uint8Array:Array)(32768))},Zlib.RawDeflate.CompressionType={NONE:0,FIXED:1,DYNAMIC:2,RESERVED:3},Zlib.RawDeflate.Lz77MinLength=3,Zlib.RawDeflate.Lz77MaxLength=258,Zlib.RawDeflate.WindowSize=32768,Zlib.RawDeflate.MaxCodeLength=16,Zlib.RawDeflate.HUFMAX=286,Zlib.RawDeflate.FixedHuffmanTable=function(){var i,table=[];for(i=0;i<288;i++)switch(!0){case i<=143:table.push([i+48,8]);break;case i<=255:table.push([i-144+400,9]);break;case i<=279:table.push([i-256+0,7]);break;case i<=287:table.push([i-280+192,8]);break;default:throw"invalid literal: "+i}return table}(),Zlib.RawDeflate.prototype.compress=function(){var blockArray,position,length,input=this.input;switch(this.compressionType){case Zlib.RawDeflate.CompressionType.NONE:for(position=0,length=input.length;position<length;)blockArray=USE_TYPEDARRAY?input.subarray(position,position+65535):input.slice(position,position+65535),position+=blockArray.length,this.makeNocompressBlock(blockArray,position===length);break;case Zlib.RawDeflate.CompressionType.FIXED:this.output=this.makeFixedHuffmanBlock(input,!0),this.op=this.output.length;break;case Zlib.RawDeflate.CompressionType.DYNAMIC:this.output=this.makeDynamicHuffmanBlock(input,!0),this.op=this.output.length;break;default:throw"invalid compression type"}return this.output},Zlib.RawDeflate.prototype.makeNocompressBlock=function(blockArray,isFinalBlock){var bfinal,btype,len,nlen,i,il,output=this.output,op=this.op;if(USE_TYPEDARRAY){for(output=new Uint8Array(this.output.buffer);output.length<=op+blockArray.length+5;)output=new Uint8Array(output.length<<1);output.set(this.output)}if(bfinal=isFinalBlock?1:0,btype=Zlib.RawDeflate.CompressionType.NONE,output[op++]=bfinal|btype<<1,len=blockArray.length,nlen=~len+65536&65535,output[op++]=255&len,output[op++]=len>>>8&255,output[op++]=255&nlen,output[op++]=nlen>>>8&255,USE_TYPEDARRAY)output.set(blockArray,op),op+=blockArray.length,output=output.subarray(0,op);else{for(i=0,il=blockArray.length;i<il;++i)output[op++]=blockArray[i];output.length=op}return this.op=op,this.output=output,output},Zlib.RawDeflate.prototype.makeFixedHuffmanBlock=function(blockArray,isFinalBlock){var bfinal,btype,data,stream=new Zlib.BitStream(USE_TYPEDARRAY?new Uint8Array(this.output.buffer):this.output,this.op);return bfinal=isFinalBlock?1:0,btype=Zlib.RawDeflate.CompressionType.FIXED,stream.writeBits(bfinal,1,!0),stream.writeBits(btype,2,!0),data=this.lz77(blockArray),this.fixedHuffman(data,stream),stream.finish()},Zlib.RawDeflate.prototype.makeDynamicHuffmanBlock=function(blockArray,isFinalBlock){var bfinal,btype,data,hlit,hdist,hclen,litLenLengths,litLenCodes,distLengths,distCodes,treeSymbols,treeLengths,treeCodes,code,bitlen,i,il,stream=new Zlib.BitStream(USE_TYPEDARRAY?new Uint8Array(this.output.buffer):this.output,this.op),hclenOrder=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15],transLengths=new Array(19);for(bfinal=isFinalBlock?1:0,btype=Zlib.RawDeflate.CompressionType.DYNAMIC,stream.writeBits(bfinal,1,!0),stream.writeBits(btype,2,!0),data=this.lz77(blockArray),litLenLengths=this.getLengths_(this.freqsLitLen,15),litLenCodes=this.getCodesFromLengths_(litLenLengths),distLengths=this.getLengths_(this.freqsDist,7),distCodes=this.getCodesFromLengths_(distLengths),hlit=286;hlit>257&&0===litLenLengths[hlit-1];hlit--);for(hdist=30;hdist>1&&0===distLengths[hdist-1];hdist--);for(treeSymbols=this.getTreeSymbols_(hlit,litLenLengths,hdist,distLengths),treeLengths=this.getLengths_(treeSymbols.freqs,7),i=0;i<19;i++)transLengths[i]=treeLengths[hclenOrder[i]];for(hclen=19;hclen>4&&0===transLengths[hclen-1];hclen--);for(treeCodes=this.getCodesFromLengths_(treeLengths),stream.writeBits(hlit-257,5,!0),stream.writeBits(hdist-1,5,!0),stream.writeBits(hclen-4,4,!0),i=0;i<hclen;i++)stream.writeBits(transLengths[i],3,!0);for(i=0,il=treeSymbols.codes.length;i<il;i++)if(code=treeSymbols.codes[i],stream.writeBits(treeCodes[code],treeLengths[code],!0),code>=16){switch(i++,code){case 16:bitlen=2;break;case 17:bitlen=3;break;case 18:bitlen=7;break;default:throw"invalid code: "+code}stream.writeBits(treeSymbols.codes[i],bitlen,!0)}return this.dynamicHuffman(data,[litLenCodes,litLenLengths],[distCodes,distLengths],stream),stream.finish()},Zlib.RawDeflate.prototype.dynamicHuffman=function(dataArray,litLen,dist,stream){var index,length,literal,code,litLenCodes,litLenLengths,distCodes,distLengths;for(litLenCodes=litLen[0],litLenLengths=litLen[1],distCodes=dist[0],distLengths=dist[1],index=0,length=dataArray.length;index<length;++index)if(literal=dataArray[index],stream.writeBits(litLenCodes[literal],litLenLengths[literal],!0),literal>256)stream.writeBits(dataArray[++index],dataArray[++index],!0),code=dataArray[++index],stream.writeBits(distCodes[code],distLengths[code],!0),stream.writeBits(dataArray[++index],dataArray[++index],!0);else if(256===literal)break;return stream},Zlib.RawDeflate.prototype.fixedHuffman=function(dataArray,stream){var index,length,literal;for(index=0,length=dataArray.length;index<length;index++)if(literal=dataArray[index],Zlib.BitStream.prototype.writeBits.apply(stream,Zlib.RawDeflate.FixedHuffmanTable[literal]),literal>256)stream.writeBits(dataArray[++index],dataArray[++index],!0),stream.writeBits(dataArray[++index],5),stream.writeBits(dataArray[++index],dataArray[++index],!0);else if(256===literal)break;return stream},Zlib.RawDeflate.Lz77Match=function(length,backwardDistance){this.length=length,this.backwardDistance=backwardDistance},Zlib.RawDeflate.Lz77Match.LengthCodeTable=function(table){return USE_TYPEDARRAY?new Uint32Array(table):table}(function(){function code(length){switch(!0){case 3===length:return[257,length-3,0];case 4===length:return[258,length-4,0];case 5===length:return[259,length-5,0];case 6===length:return[260,length-6,0];case 7===length:return[261,length-7,0];
+case 8===length:return[262,length-8,0];case 9===length:return[263,length-9,0];case 10===length:return[264,length-10,0];case length<=12:return[265,length-11,1];case length<=14:return[266,length-13,1];case length<=16:return[267,length-15,1];case length<=18:return[268,length-17,1];case length<=22:return[269,length-19,2];case length<=26:return[270,length-23,2];case length<=30:return[271,length-27,2];case length<=34:return[272,length-31,2];case length<=42:return[273,length-35,3];case length<=50:return[274,length-43,3];case length<=58:return[275,length-51,3];case length<=66:return[276,length-59,3];case length<=82:return[277,length-67,4];case length<=98:return[278,length-83,4];case length<=114:return[279,length-99,4];case length<=130:return[280,length-115,4];case length<=162:return[281,length-131,5];case length<=194:return[282,length-163,5];case length<=226:return[283,length-195,5];case length<=257:return[284,length-227,5];case 258===length:return[285,length-258,0];default:throw"invalid length: "+length}}var i,c,table=[];for(i=3;i<=258;i++)c=code(i),table[i]=c[2]<<24|c[1]<<16|c[0];return table}()),Zlib.RawDeflate.Lz77Match.prototype.getDistanceCode_=function(dist){var r;switch(!0){case 1===dist:r=[0,dist-1,0];break;case 2===dist:r=[1,dist-2,0];break;case 3===dist:r=[2,dist-3,0];break;case 4===dist:r=[3,dist-4,0];break;case dist<=6:r=[4,dist-5,1];break;case dist<=8:r=[5,dist-7,1];break;case dist<=12:r=[6,dist-9,2];break;case dist<=16:r=[7,dist-13,2];break;case dist<=24:r=[8,dist-17,3];break;case dist<=32:r=[9,dist-25,3];break;case dist<=48:r=[10,dist-33,4];break;case dist<=64:r=[11,dist-49,4];break;case dist<=96:r=[12,dist-65,5];break;case dist<=128:r=[13,dist-97,5];break;case dist<=192:r=[14,dist-129,6];break;case dist<=256:r=[15,dist-193,6];break;case dist<=384:r=[16,dist-257,7];break;case dist<=512:r=[17,dist-385,7];break;case dist<=768:r=[18,dist-513,8];break;case dist<=1024:r=[19,dist-769,8];break;case dist<=1536:r=[20,dist-1025,9];break;case dist<=2048:r=[21,dist-1537,9];break;case dist<=3072:r=[22,dist-2049,10];break;case dist<=4096:r=[23,dist-3073,10];break;case dist<=6144:r=[24,dist-4097,11];break;case dist<=8192:r=[25,dist-6145,11];break;case dist<=12288:r=[26,dist-8193,12];break;case dist<=16384:r=[27,dist-12289,12];break;case dist<=24576:r=[28,dist-16385,13];break;case dist<=32768:r=[29,dist-24577,13];break;default:throw"invalid distance"}return r},Zlib.RawDeflate.Lz77Match.prototype.toLz77Array=function(){var code,length=this.length,dist=this.backwardDistance,codeArray=[],pos=0;return code=Zlib.RawDeflate.Lz77Match.LengthCodeTable[length],codeArray[pos++]=65535&code,codeArray[pos++]=code>>16&255,codeArray[pos++]=code>>24,code=this.getDistanceCode_(dist),codeArray[pos++]=code[0],codeArray[pos++]=code[1],codeArray[pos++]=code[2],codeArray},Zlib.RawDeflate.prototype.lz77=function(dataArray){function writeMatch(match,offset){var i,il,lz77Array=match.toLz77Array();for(i=0,il=lz77Array.length;i<il;++i)lz77buf[pos++]=lz77Array[i];freqsLitLen[lz77Array[0]]++,freqsDist[lz77Array[3]]++,skipLength=match.length+offset-1,prevMatch=null}var position,length,i,il,matchKey,matchList,longestMatch,prevMatch,tmp,table={},windowSize=Zlib.RawDeflate.WindowSize,lz77buf=USE_TYPEDARRAY?new Uint16Array(2*dataArray.length):[],pos=0,skipLength=0,freqsLitLen=new(USE_TYPEDARRAY?Uint32Array:Array)(286),freqsDist=new(USE_TYPEDARRAY?Uint32Array:Array)(30),lazy=this.lazy;if(!USE_TYPEDARRAY){for(i=0;i<=285;)freqsLitLen[i++]=0;for(i=0;i<=29;)freqsDist[i++]=0}for(freqsLitLen[256]=1,position=0,length=dataArray.length;position<length;++position){for(matchKey=0,i=0,il=Zlib.RawDeflate.Lz77MinLength;i<il&&position+i!==length;++i)matchKey=matchKey<<8|dataArray[position+i];if(void 0===table[matchKey]&&(table[matchKey]=[]),matchList=table[matchKey],skipLength-- >0)matchList.push(position);else{for(;matchList.length>0&&position-matchList[0]>windowSize;)matchList.shift();if(position+Zlib.RawDeflate.Lz77MinLength>=length){for(prevMatch&&writeMatch(prevMatch,-1),i=0,il=length-position;i<il;++i)tmp=dataArray[position+i],lz77buf[pos++]=tmp,++freqsLitLen[tmp];break}matchList.length>0?(longestMatch=this.searchLongestMatch_(dataArray,position,matchList),prevMatch?prevMatch.length<longestMatch.length?(tmp=dataArray[position-1],lz77buf[pos++]=tmp,++freqsLitLen[tmp],writeMatch(longestMatch,0)):writeMatch(prevMatch,-1):longestMatch.length<lazy?prevMatch=longestMatch:writeMatch(longestMatch,0)):prevMatch?writeMatch(prevMatch,-1):(tmp=dataArray[position],lz77buf[pos++]=tmp,++freqsLitLen[tmp]),matchList.push(position)}}return lz77buf[pos++]=256,freqsLitLen[256]++,this.freqsLitLen=freqsLitLen,this.freqsDist=freqsDist,USE_TYPEDARRAY?lz77buf.subarray(0,pos):lz77buf},Zlib.RawDeflate.prototype.searchLongestMatch_=function(data,position,matchList){var match,currentMatch,matchLength,i,j,l,matchMax=0,dl=data.length;permatch:for(i=0,l=matchList.length;i<l;i++){if(match=matchList[l-i-1],matchLength=Zlib.RawDeflate.Lz77MinLength,matchMax>Zlib.RawDeflate.Lz77MinLength){for(j=matchMax;j>Zlib.RawDeflate.Lz77MinLength;j--)if(data[match+j-1]!==data[position+j-1])continue permatch;matchLength=matchMax}for(;matchLength<Zlib.RawDeflate.Lz77MaxLength&&position+matchLength<dl&&data[match+matchLength]===data[position+matchLength];)++matchLength;if(matchLength>matchMax&&(currentMatch=match,matchMax=matchLength),matchLength===Zlib.RawDeflate.Lz77MaxLength)break}return new Zlib.RawDeflate.Lz77Match(matchMax,position-currentMatch)},Zlib.RawDeflate.prototype.getTreeSymbols_=function(hlit,litlenLengths,hdist,distLengths){var i,j,runLength,l,nResult,rpt,src=new(USE_TYPEDARRAY?Uint32Array:Array)(hlit+hdist),result=new(USE_TYPEDARRAY?Uint32Array:Array)(316),freqs=new(USE_TYPEDARRAY?Uint8Array:Array)(19);for(j=0,i=0;i<hlit;i++)src[j++]=litlenLengths[i];for(i=0;i<hdist;i++)src[j++]=distLengths[i];if(!USE_TYPEDARRAY)for(i=0,l=freqs.length;i<l;++i)freqs[i]=0;for(nResult=0,i=0,l=src.length;i<l;i+=j){for(j=1;i+j<l&&src[i+j]===src[i];++j);if(runLength=j,0===src[i])if(runLength<3)for(;runLength-- >0;)result[nResult++]=0,freqs[0]++;else for(;runLength>0;)rpt=runLength<138?runLength:138,rpt>runLength-3&&rpt<runLength&&(rpt=runLength-3),rpt<=10?(result[nResult++]=17,result[nResult++]=rpt-3,freqs[17]++):(result[nResult++]=18,result[nResult++]=rpt-11,freqs[18]++),runLength-=rpt;else if(result[nResult++]=src[i],freqs[src[i]]++,runLength--,runLength<3)for(;runLength-- >0;)result[nResult++]=src[i],freqs[src[i]]++;else for(;runLength>0;)rpt=runLength<6?runLength:6,rpt>runLength-3&&rpt<runLength&&(rpt=runLength-3),result[nResult++]=16,result[nResult++]=rpt-3,freqs[16]++,runLength-=rpt}return{codes:USE_TYPEDARRAY?result.subarray(0,nResult):result.slice(0,nResult),freqs:freqs}},Zlib.RawDeflate.prototype.getLengths_=function(freqs,limit){var nodes,values,codeLength,i,il,nSymbols=freqs.length,heap=new Zlib.Heap(2*Zlib.RawDeflate.HUFMAX),length=new(USE_TYPEDARRAY?Uint8Array:Array)(nSymbols);if(!USE_TYPEDARRAY)for(i=0;i<nSymbols;i++)length[i]=0;for(i=0;i<nSymbols;++i)freqs[i]>0&&heap.push(i,freqs[i]);if(nodes=new Array(heap.length/2),values=new(USE_TYPEDARRAY?Uint32Array:Array)(heap.length/2),1===nodes.length)return length[heap.pop().index]=1,length;for(i=0,il=heap.length/2;i<il;++i)nodes[i]=heap.pop(),values[i]=nodes[i].value;for(codeLength=this.reversePackageMerge_(values,values.length,limit),i=0,il=nodes.length;i<il;++i)length[nodes[i].index]=codeLength[i];return length},Zlib.RawDeflate.prototype.reversePackageMerge_=function(freqs,symbols,limit){function takePackage(j){var x=type[j][currentPosition[j]];x===symbols?(takePackage(j+1),takePackage(j+1)):--codeLength[x],++currentPosition[j]}var i,j,t,weight,next,minimumCost=new(USE_TYPEDARRAY?Uint16Array:Array)(limit),flag=new(USE_TYPEDARRAY?Uint8Array:Array)(limit),codeLength=new(USE_TYPEDARRAY?Uint8Array:Array)(symbols),value=new Array(limit),type=new Array(limit),currentPosition=new Array(limit),excess=(1<<limit)-symbols,half=1<<limit-1;for(minimumCost[limit-1]=symbols,j=0;j<limit;++j)excess<half?flag[j]=0:(flag[j]=1,excess-=half),excess<<=1,minimumCost[limit-2-j]=(minimumCost[limit-1-j]/2|0)+symbols;for(minimumCost[0]=flag[0],value[0]=new Array(minimumCost[0]),type[0]=new Array(minimumCost[0]),j=1;j<limit;++j)minimumCost[j]>2*minimumCost[j-1]+flag[j]&&(minimumCost[j]=2*minimumCost[j-1]+flag[j]),value[j]=new Array(minimumCost[j]),type[j]=new Array(minimumCost[j]);for(i=0;i<symbols;++i)codeLength[i]=limit;for(t=0;t<minimumCost[limit-1];++t)value[limit-1][t]=freqs[t],type[limit-1][t]=t;for(i=0;i<limit;++i)currentPosition[i]=0;for(1===flag[limit-1]&&(--codeLength[0],++currentPosition[limit-1]),j=limit-2;j>=0;--j){for(i=0,weight=0,next=currentPosition[j+1],t=0;t<minimumCost[j];t++)weight=value[j+1][next]+value[j+1][next+1],weight>freqs[i]?(value[j][t]=weight,type[j][t]=symbols,next+=2):(value[j][t]=freqs[i],type[j][t]=i,++i);currentPosition[j]=0,1===flag[j]&&takePackage(j)}return codeLength},Zlib.RawDeflate.prototype.getCodesFromLengths_=function(lengths){var i,il,j,m,codes=new(USE_TYPEDARRAY?Uint16Array:Array)(lengths.length),count=[],startCode=[],code=0;for(i=0,il=lengths.length;i<il;i++)count[lengths[i]]=(0|count[lengths[i]])+1;for(i=1,il=Zlib.RawDeflate.MaxCodeLength;i<=il;i++)startCode[i]=code,code+=0|count[i],code<<=1;for(i=0,il=lengths.length;i<il;i++)for(code=startCode[lengths[i]],startCode[lengths[i]]+=1,codes[i]=0,j=0,m=lengths[i];j<m;j++)codes[i]=codes[i]<<1|1&code,code>>>=1;return codes},Zlib.Unzip=function(input,opt_params){opt_params=opt_params||{},this.input=USE_TYPEDARRAY&&input instanceof Array?new Uint8Array(input):input,this.ip=0,this.eocdrOffset,this.numberOfThisDisk,this.startDisk,this.totalEntriesThisDisk,this.totalEntries,this.centralDirectorySize,this.centralDirectoryOffset,this.commentLength,this.comment,this.fileHeaderList,this.filenameToIndex,this.verify=opt_params.verify||!1,this.password=opt_params.password},Zlib.Unzip.CompressionMethod=Zlib.Zip.CompressionMethod,Zlib.Unzip.FileHeaderSignature=Zlib.Zip.FileHeaderSignature,Zlib.Unzip.LocalFileHeaderSignature=Zlib.Zip.LocalFileHeaderSignature,Zlib.Unzip.CentralDirectorySignature=Zlib.Zip.CentralDirectorySignature,Zlib.Unzip.FileHeader=function(input,ip){this.input=input,this.offset=ip,this.length,this.version,this.os,this.needVersion,this.flags,this.compression,this.time,this.date,this.crc32,this.compressedSize,this.plainSize,this.fileNameLength,this.extraFieldLength,this.fileCommentLength,this.diskNumberStart,this.internalFileAttributes,this.externalFileAttributes,this.relativeOffset,this.filename,this.extraField,this.comment},Zlib.Unzip.FileHeader.prototype.parse=function(){var input=this.input,ip=this.offset;if(input[ip++]!==Zlib.Unzip.FileHeaderSignature[0]||input[ip++]!==Zlib.Unzip.FileHeaderSignature[1]||input[ip++]!==Zlib.Unzip.FileHeaderSignature[2]||input[ip++]!==Zlib.Unzip.FileHeaderSignature[3])throw new Error("invalid file header signature");this.version=input[ip++],this.os=input[ip++],this.needVersion=input[ip++]|input[ip++]<<8,this.flags=input[ip++]|input[ip++]<<8,this.compression=input[ip++]|input[ip++]<<8,this.time=input[ip++]|input[ip++]<<8,this.date=input[ip++]|input[ip++]<<8,this.crc32=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,this.compressedSize=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,this.plainSize=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,this.fileNameLength=input[ip++]|input[ip++]<<8,this.extraFieldLength=input[ip++]|input[ip++]<<8,this.fileCommentLength=input[ip++]|input[ip++]<<8,this.diskNumberStart=input[ip++]|input[ip++]<<8,this.internalFileAttributes=input[ip++]|input[ip++]<<8,this.externalFileAttributes=input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24,this.relativeOffset=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,this.filename=String.fromCharCode.apply(null,USE_TYPEDARRAY?input.subarray(ip,ip+=this.fileNameLength):input.slice(ip,ip+=this.fileNameLength)),this.extraField=USE_TYPEDARRAY?input.subarray(ip,ip+=this.extraFieldLength):input.slice(ip,ip+=this.extraFieldLength),this.comment=USE_TYPEDARRAY?input.subarray(ip,ip+this.fileCommentLength):input.slice(ip,ip+this.fileCommentLength),this.length=ip-this.offset},Zlib.Unzip.LocalFileHeader=function(input,ip){this.input=input,this.offset=ip,this.length,this.needVersion,this.flags,this.compression,this.time,this.date,this.crc32,this.compressedSize,this.plainSize,this.fileNameLength,this.extraFieldLength,this.filename,this.extraField},Zlib.Unzip.LocalFileHeader.Flags=Zlib.Zip.Flags,Zlib.Unzip.LocalFileHeader.prototype.parse=function(){var input=this.input,ip=this.offset;if(input[ip++]!==Zlib.Unzip.LocalFileHeaderSignature[0]||input[ip++]!==Zlib.Unzip.LocalFileHeaderSignature[1]||input[ip++]!==Zlib.Unzip.LocalFileHeaderSignature[2]||input[ip++]!==Zlib.Unzip.LocalFileHeaderSignature[3])throw new Error("invalid local file header signature");this.needVersion=input[ip++]|input[ip++]<<8,this.flags=input[ip++]|input[ip++]<<8,this.compression=input[ip++]|input[ip++]<<8,this.time=input[ip++]|input[ip++]<<8,this.date=input[ip++]|input[ip++]<<8,this.crc32=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,this.compressedSize=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,this.plainSize=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,this.fileNameLength=input[ip++]|input[ip++]<<8,this.extraFieldLength=input[ip++]|input[ip++]<<8,this.filename=String.fromCharCode.apply(null,USE_TYPEDARRAY?input.subarray(ip,ip+=this.fileNameLength):input.slice(ip,ip+=this.fileNameLength)),this.extraField=USE_TYPEDARRAY?input.subarray(ip,ip+=this.extraFieldLength):input.slice(ip,ip+=this.extraFieldLength),this.length=ip-this.offset},Zlib.Unzip.prototype.searchEndOfCentralDirectoryRecord=function(){var ip,input=this.input;for(ip=input.length-12;ip>0;--ip)if(input[ip]===Zlib.Unzip.CentralDirectorySignature[0]&&input[ip+1]===Zlib.Unzip.CentralDirectorySignature[1]&&input[ip+2]===Zlib.Unzip.CentralDirectorySignature[2]&&input[ip+3]===Zlib.Unzip.CentralDirectorySignature[3])return void(this.eocdrOffset=ip);throw new Error("End of Central Directory Record not found")},Zlib.Unzip.prototype.parseEndOfCentralDirectoryRecord=function(){var ip,input=this.input;if(this.eocdrOffset||this.searchEndOfCentralDirectoryRecord(),ip=this.eocdrOffset,input[ip++]!==Zlib.Unzip.CentralDirectorySignature[0]||input[ip++]!==Zlib.Unzip.CentralDirectorySignature[1]||input[ip++]!==Zlib.Unzip.CentralDirectorySignature[2]||input[ip++]!==Zlib.Unzip.CentralDirectorySignature[3])throw new Error("invalid signature");this.numberOfThisDisk=input[ip++]|input[ip++]<<8,this.startDisk=input[ip++]|input[ip++]<<8,this.totalEntriesThisDisk=input[ip++]|input[ip++]<<8,this.totalEntries=input[ip++]|input[ip++]<<8,this.centralDirectorySize=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,this.centralDirectoryOffset=(input[ip++]|input[ip++]<<8|input[ip++]<<16|input[ip++]<<24)>>>0,this.commentLength=input[ip++]|input[ip++]<<8,this.comment=USE_TYPEDARRAY?input.subarray(ip,ip+this.commentLength):input.slice(ip,ip+this.commentLength)},Zlib.Unzip.prototype.parseFileHeader=function(){var ip,fileHeader,i,il,filelist=[],filetable={};if(!this.fileHeaderList){for(void 0===this.centralDirectoryOffset&&this.parseEndOfCentralDirectoryRecord(),ip=this.centralDirectoryOffset,i=0,il=this.totalEntries;i<il;++i)fileHeader=new Zlib.Unzip.FileHeader(this.input,ip),fileHeader.parse(),ip+=fileHeader.length,filelist[i]=fileHeader,filetable[fileHeader.filename]=i;if(this.centralDirectorySize<ip-this.centralDirectoryOffset)throw new Error("invalid file header size");this.fileHeaderList=filelist,this.filenameToIndex=filetable}},Zlib.Unzip.prototype.getFileData=function(index,opt_params){opt_params=opt_params||{};var localFileHeader,offset,length,buffer,crc32,key,i,il,input=this.input,fileHeaderList=this.fileHeaderList;if(fileHeaderList||this.parseFileHeader(),void 0===fileHeaderList[index])throw new Error("wrong index");if(offset=fileHeaderList[index].relativeOffset,localFileHeader=new Zlib.Unzip.LocalFileHeader(this.input,offset),localFileHeader.parse(),offset+=localFileHeader.length,length=localFileHeader.compressedSize,0!==(localFileHeader.flags&Zlib.Unzip.LocalFileHeader.Flags.ENCRYPT)){if(!opt_params.password&&!this.password)throw new Error("please set password");for(key=this.createDecryptionKey(opt_params.password||this.password),i=offset,il=offset+12;i<il;++i)this.decode(key,input[i]);for(offset+=12,length-=12,i=offset,il=offset+length;i<il;++i)input[i]=this.decode(key,input[i])}switch(localFileHeader.compression){case Zlib.Unzip.CompressionMethod.STORE:buffer=USE_TYPEDARRAY?this.input.subarray(offset,offset+length):this.input.slice(offset,offset+length);break;case Zlib.Unzip.CompressionMethod.DEFLATE:buffer=new Zlib.RawInflate(this.input,{index:offset,bufferSize:localFileHeader.plainSize}).decompress();break;default:throw new Error("unknown compression type")}if(this.verify&&(crc32=Zlib.CRC32.calc(buffer),localFileHeader.crc32!==crc32))throw new Error("wrong crc: file=0x"+localFileHeader.crc32.toString(16)+", data=0x"+crc32.toString(16));return buffer},Zlib.Unzip.prototype.getFilenames=function(){var i,il,fileHeaderList,filenameList=[];for(this.fileHeaderList||this.parseFileHeader(),fileHeaderList=this.fileHeaderList,i=0,il=fileHeaderList.length;i<il;++i)filenameList[i]=fileHeaderList[i].filename;return filenameList},Zlib.Unzip.prototype.decompress=function(filename,opt_params){var index;if(this.filenameToIndex||this.parseFileHeader(),index=this.filenameToIndex[filename],void 0===index)throw new Error(filename+" not found");return this.getFileData(index,opt_params)},Zlib.Unzip.prototype.setPassword=function(password){this.password=password},Zlib.Unzip.prototype.decode=function(key,n){return n^=this.getByte(key),this.updateKeys(key,n),n},Zlib.Unzip.prototype.updateKeys=Zlib.Zip.prototype.updateKeys,Zlib.Unzip.prototype.createDecryptionKey=Zlib.Zip.prototype.createEncryptionKey,Zlib.Unzip.prototype.getByte=Zlib.Zip.prototype.getByte,Zlib.Util.stringToByteArray=function(str){var i,il,tmp=str.split("");for(i=0,il=tmp.length;i<il;i++)tmp[i]=(255&tmp[i].charCodeAt(0))>>>0;return tmp},Zlib.Adler32=function(array){return"string"==typeof array&&(array=Zlib.Util.stringToByteArray(array)),Zlib.Adler32.update(1,array)},Zlib.Adler32.update=function(adler,array){for(var tlen,s1=65535&adler,s2=adler>>>16&65535,len=array.length,i=0;len>0;){tlen=len>Zlib.Adler32.OptimizationParameter?Zlib.Adler32.OptimizationParameter:len,len-=tlen;do s1+=array[i++],s2+=s1;while(--tlen);s1%=65521,s2%=65521}return(s2<<16|s1)>>>0},Zlib.Adler32.OptimizationParameter=1024,Zlib.BitStream=function(buffer,bufferPosition){if(this.index="number"==typeof bufferPosition?bufferPosition:0,this.bitindex=0,this.buffer=buffer instanceof(USE_TYPEDARRAY?Uint8Array:Array)?buffer:new(USE_TYPEDARRAY?Uint8Array:Array)(Zlib.BitStream.DefaultBlockSize),2*this.buffer.length<=this.index)throw new Error("invalid index");this.buffer.length<=this.index&&this.expandBuffer()},Zlib.BitStream.DefaultBlockSize=32768,Zlib.BitStream.prototype.expandBuffer=function(){var i,oldbuf=this.buffer,il=oldbuf.length,buffer=new(USE_TYPEDARRAY?Uint8Array:Array)(il<<1);if(USE_TYPEDARRAY)buffer.set(oldbuf);else for(i=0;i<il;++i)buffer[i]=oldbuf[i];return this.buffer=buffer},Zlib.BitStream.prototype.writeBits=function(number,n,reverse){function rev32_(n){return Zlib.BitStream.ReverseTable[255&n]<<24|Zlib.BitStream.ReverseTable[n>>>8&255]<<16|Zlib.BitStream.ReverseTable[n>>>16&255]<<8|Zlib.BitStream.ReverseTable[n>>>24&255]}var i,buffer=this.buffer,index=this.index,bitindex=this.bitindex,current=buffer[index];if(reverse&&n>1&&(number=n>8?rev32_(number)>>32-n:Zlib.BitStream.ReverseTable[number]>>8-n),n+bitindex<8)current=current<<n|number,bitindex+=n;else for(i=0;i<n;++i)current=current<<1|number>>n-i-1&1,8===++bitindex&&(bitindex=0,buffer[index++]=Zlib.BitStream.ReverseTable[current],current=0,index===buffer.length&&(buffer=this.expandBuffer()));buffer[index]=current,this.buffer=buffer,this.bitindex=bitindex,this.index=index},Zlib.BitStream.prototype.finish=function(){var output,buffer=this.buffer,index=this.index;return this.bitindex>0&&(buffer[index]<<=8-this.bitindex,buffer[index]=Zlib.BitStream.ReverseTable[buffer[index]],index++),USE_TYPEDARRAY?output=buffer.subarray(0,index):(buffer.length=index,output=buffer),output},Zlib.BitStream.ReverseTable=function(table){return table}(function(){var i,table=new(USE_TYPEDARRAY?Uint8Array:Array)(256);for(i=0;i<256;++i)table[i]=function(n){var r=n,s=7;for(n>>>=1;n;n>>>=1)r<<=1,r|=1&n,--s;return(r<<s&255)>>>0}(i);return table}());var ZLIB_CRC32_COMPACT=!1;Zlib.CRC32.calc=function(data,pos,length){return Zlib.CRC32.update(data,0,pos,length)},Zlib.CRC32.update=function(data,crc,pos,length){var table=Zlib.CRC32.Table,i="number"==typeof pos?pos:pos=0,il="number"==typeof length?length:data.length;for(crc^=4294967295,i=7&il;i--;++pos)crc=crc>>>8^table[255&(crc^data[pos])];for(i=il>>3;i--;pos+=8)crc=crc>>>8^table[255&(crc^data[pos])],crc=crc>>>8^table[255&(crc^data[pos+1])],crc=crc>>>8^table[255&(crc^data[pos+2])],crc=crc>>>8^table[255&(crc^data[pos+3])],crc=crc>>>8^table[255&(crc^data[pos+4])],crc=crc>>>8^table[255&(crc^data[pos+5])],crc=crc>>>8^table[255&(crc^data[pos+6])],crc=crc>>>8^table[255&(crc^data[pos+7])];return(4294967295^crc)>>>0},Zlib.CRC32.single=function(num,crc){return(Zlib.CRC32.Table[255&(num^crc)]^num>>>8)>>>0},Zlib.CRC32.Table_=[0,1996959894,3993919788,2567524794,124634137,1886057615,3915621685,2657392035,249268274,2044508324,3772115230,2547177864,162941995,2125561021,3887607047,2428444049,498536548,1789927666,4089016648,2227061214,450548861,1843258603,4107580753,2211677639,325883990,1684777152,4251122042,2321926636,335633487,1661365465,4195302755,2366115317,997073096,1281953886,3579855332,2724688242,1006888145,1258607687,3524101629,2768942443,901097722,1119000684,3686517206,2898065728,853044451,1172266101,3705015759,2882616665,651767980,1373503546,3369554304,3218104598,565507253,1454621731,3485111705,3099436303,671266974,1594198024,3322730930,2970347812,795835527,1483230225,3244367275,3060149565,1994146192,31158534,2563907772,4023717930,1907459465,112637215,2680153253,3904427059,2013776290,251722036,2517215374,3775830040,2137656763,141376813,2439277719,3865271297,1802195444,476864866,2238001368,4066508878,1812370925,453092731,2181625025,4111451223,1706088902,314042704,2344532202,4240017532,1658658271,366619977,2362670323,4224994405,1303535960,984961486,2747007092,3569037538,1256170817,1037604311,2765210733,3554079995,1131014506,879679996,2909243462,3663771856,1141124467,855842277,2852801631,3708648649,1342533948,654459306,3188396048,3373015174,1466479909,544179635,3110523913,3462522015,1591671054,702138776,2966460450,3352799412,1504918807,783551873,3082640443,3233442989,3988292384,2596254646,62317068,1957810842,3939845945,2647816111,81470997,1943803523,3814918930,2489596804,225274430,2053790376,3826175755,2466906013,167816743,2097651377,4027552580,2265490386,503444072,1762050814,4150417245,2154129355,426522225,1852507879,4275313526,2312317920,282753626,1742555852,4189708143,2394877945,397917763,1622183637,3604390888,2714866558,953729732,1340076626,3518719985,2797360999,1068828381,1219638859,3624741850,2936675148,906185462,1090812512,3747672003,2825379669,829329135,1181335161,3412177804,3160834842,628085408,1382605366,3423369109,3138078467,570562233,1426400815,3317316542,2998733608,733239954,1555261956,3268935591,3050360625,752459403,1541320221,2607071920,3965973030,1969922972,40735498,2617837225,3943577151,1913087877,83908371,2512341634,3803740692,2075208622,213261112,2463272603,3855990285,2094854071,198958881,2262029012,4057260610,1759359992,534414190,2176718541,4139329115,1873836001,414664567,2282248934,4279200368,1711684554,285281116,2405801727,4167216745,1634467795,376229701,2685067896,3608007406,1308918612,956543938,2808555105,3495958263,1231636301,1047427035,2932959818,3654703836,1088359270,936918e3,2847714899,3736837829,1202900863,817233897,3183342108,3401237130,1404277552,615818150,3134207493,3453421203,1423857449,601450431,3009837614,3294710456,1567103746,711928724,3020668471,3272380065,1510334235,755167117],Zlib.CRC32.Table=ZLIB_CRC32_COMPACT?function(){var c,i,j,table=new(USE_TYPEDARRAY?Uint32Array:Array)(256);for(i=0;i<256;++i){for(c=i,j=0;j<8;++j)c=1&c?3988292384^c>>>1:c>>>1;table[i]=c>>>0}return table}():USE_TYPEDARRAY?new Uint32Array(Zlib.CRC32.Table_):Zlib.CRC32.Table_,Zlib.Deflate=function(input,opt_params){this.input=input,this.output=new(USE_TYPEDARRAY?Uint8Array:Array)(Zlib.Deflate.DefaultBufferSize),this.compressionType=Zlib.Deflate.CompressionType.DYNAMIC,this.rawDeflate;var prop,rawDeflateOption={};!opt_params&&(opt_params={})||"number"==typeof opt_params.compressionType&&(this.compressionType=opt_params.compressionType);for(prop in opt_params)rawDeflateOption[prop]=opt_params[prop];rawDeflateOption.outputBuffer=this.output,this.rawDeflate=new Zlib.RawDeflate(this.input,rawDeflateOption)},Zlib.Deflate.DefaultBufferSize=32768,Zlib.Deflate.CompressionType=Zlib.RawDeflate.CompressionType,Zlib.Deflate.compress=function(input,opt_params){return new Zlib.Deflate(input,opt_params).compress()},Zlib.Deflate.prototype.compress=function(){var cm,cinfo,cmf,flg,fcheck,fdict,flevel,adler,output,pos=0;switch(output=this.output,cm=Zlib.CompressionMethod.DEFLATE){case Zlib.CompressionMethod.DEFLATE:cinfo=Math.LOG2E*Math.log(Zlib.RawDeflate.WindowSize)-8;break;default:throw new Error("invalid compression method")}switch(cmf=cinfo<<4|cm,output[pos++]=cmf,fdict=0,cm){case Zlib.CompressionMethod.DEFLATE:switch(this.compressionType){case Zlib.Deflate.CompressionType.NONE:flevel=0;break;case Zlib.Deflate.CompressionType.FIXED:flevel=1;break;case Zlib.Deflate.CompressionType.DYNAMIC:flevel=2;break;default:throw new Error("unsupported compression type")}break;default:throw new Error("invalid compression method")}return flg=flevel<<6|fdict<<5,fcheck=31-(256*cmf+flg)%31,flg|=fcheck,output[pos++]=flg,adler=Zlib.Adler32(this.input),this.rawDeflate.op=pos,output=this.rawDeflate.compress(),pos=output.length,USE_TYPEDARRAY&&(output=new Uint8Array(output.buffer),output.length<=pos+4&&(this.output=new Uint8Array(output.length+4),this.output.set(output),output=this.output),output=output.subarray(0,pos+4)),output[pos++]=adler>>24&255,output[pos++]=adler>>16&255,output[pos++]=adler>>8&255,output[pos++]=255&adler,output};var MAX_WBITS=15,DEF_WBITS=MAX_WBITS,MANY=1440,BMAX=15,PRESET_DICT=32,Z_NO_FLUSH=0,Z_FINISH=4,Z_DEFLATED=8,Z_OK=0,Z_STREAM_END=1,Z_NEED_DICT=2,Z_STREAM_ERROR=-2,Z_DATA_ERROR=-3,Z_MEM_ERROR=-4,Z_BUF_ERROR=-5,METHOD=0,FLAG=1,DICT4=2,DICT3=3,DICT2=4,DICT1=5,DICT0=6,BLOCKS=7,CHECK4=8,CHECK3=9,CHECK2=10,CHECK1=11,DONE=12,BAD=13,inflate_mask=[0,1,3,7,15,31,63,127,255,511,1023,2047,4095,8191,16383,32767,65535],IB_TYPE=0,IB_LENS=1,IB_STORED=2,IB_TABLE=3,IB_BTREE=4,IB_DTREE=5,IB_CODES=6,IB_DRY=7,IB_DONE=8,IB_BAD=9,fixed_bl=9,fixed_bd=5,fixed_tl=[96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,192,80,7,10,0,8,96,0,8,32,0,9,160,0,8,0,0,8,128,0,8,64,0,9,224,80,7,6,0,8,88,0,8,24,0,9,144,83,7,59,0,8,120,0,8,56,0,9,208,81,7,17,0,8,104,0,8,40,0,9,176,0,8,8,0,8,136,0,8,72,0,9,240,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,200,81,7,13,0,8,100,0,8,36,0,9,168,0,8,4,0,8,132,0,8,68,0,9,232,80,7,8,0,8,92,0,8,28,0,9,152,84,7,83,0,8,124,0,8,60,0,9,216,82,7,23,0,8,108,0,8,44,0,9,184,0,8,12,0,8,140,0,8,76,0,9,248,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,196,81,7,11,0,8,98,0,8,34,0,9,164,0,8,2,0,8,130,0,8,66,0,9,228,80,7,7,0,8,90,0,8,26,0,9,148,84,7,67,0,8,122,0,8,58,0,9,212,82,7,19,0,8,106,0,8,42,0,9,180,0,8,10,0,8,138,0,8,74,0,9,244,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,204,81,7,15,0,8,102,0,8,38,0,9,172,0,8,6,0,8,134,0,8,70,0,9,236,80,7,9,0,8,94,0,8,30,0,9,156,84,7,99,0,8,126,0,8,62,0,9,220,82,7,27,0,8,110,0,8,46,0,9,188,0,8,14,0,8,142,0,8,78,0,9,252,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,194,80,7,10,0,8,97,0,8,33,0,9,162,0,8,1,0,8,129,0,8,65,0,9,226,80,7,6,0,8,89,0,8,25,0,9,146,83,7,59,0,8,121,0,8,57,0,9,210,81,7,17,0,8,105,0,8,41,0,9,178,0,8,9,0,8,137,0,8,73,0,9,242,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,202,81,7,13,0,8,101,0,8,37,0,9,170,0,8,5,0,8,133,0,8,69,0,9,234,80,7,8,0,8,93,0,8,29,0,9,154,84,7,83,0,8,125,0,8,61,0,9,218,82,7,23,0,8,109,0,8,45,0,9,186,0,8,13,0,8,141,0,8,77,0,9,250,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,198,81,7,11,0,8,99,0,8,35,0,9,166,0,8,3,0,8,131,0,8,67,0,9,230,80,7,7,0,8,91,0,8,27,0,9,150,84,7,67,0,8,123,0,8,59,0,9,214,82,7,19,0,8,107,0,8,43,0,9,182,0,8,11,0,8,139,0,8,75,0,9,246,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,206,81,7,15,0,8,103,0,8,39,0,9,174,0,8,7,0,8,135,0,8,71,0,9,238,80,7,9,0,8,95,0,8,31,0,9,158,84,7,99,0,8,127,0,8,63,0,9,222,82,7,27,0,8,111,0,8,47,0,9,190,0,8,15,0,8,143,0,8,79,0,9,254,96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,193,80,7,10,0,8,96,0,8,32,0,9,161,0,8,0,0,8,128,0,8,64,0,9,225,80,7,6,0,8,88,0,8,24,0,9,145,83,7,59,0,8,120,0,8,56,0,9,209,81,7,17,0,8,104,0,8,40,0,9,177,0,8,8,0,8,136,0,8,72,0,9,241,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,201,81,7,13,0,8,100,0,8,36,0,9,169,0,8,4,0,8,132,0,8,68,0,9,233,80,7,8,0,8,92,0,8,28,0,9,153,84,7,83,0,8,124,0,8,60,0,9,217,82,7,23,0,8,108,0,8,44,0,9,185,0,8,12,0,8,140,0,8,76,0,9,249,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,197,81,7,11,0,8,98,0,8,34,0,9,165,0,8,2,0,8,130,0,8,66,0,9,229,80,7,7,0,8,90,0,8,26,0,9,149,84,7,67,0,8,122,0,8,58,0,9,213,82,7,19,0,8,106,0,8,42,0,9,181,0,8,10,0,8,138,0,8,74,0,9,245,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,205,81,7,15,0,8,102,0,8,38,0,9,173,0,8,6,0,8,134,0,8,70,0,9,237,80,7,9,0,8,94,0,8,30,0,9,157,84,7,99,0,8,126,0,8,62,0,9,221,82,7,27,0,8,110,0,8,46,0,9,189,0,8,14,0,8,142,0,8,78,0,9,253,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,195,80,7,10,0,8,97,0,8,33,0,9,163,0,8,1,0,8,129,0,8,65,0,9,227,80,7,6,0,8,89,0,8,25,0,9,147,83,7,59,0,8,121,0,8,57,0,9,211,81,7,17,0,8,105,0,8,41,0,9,179,0,8,9,0,8,137,0,8,73,0,9,243,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,203,81,7,13,0,8,101,0,8,37,0,9,171,0,8,5,0,8,133,0,8,69,0,9,235,80,7,8,0,8,93,0,8,29,0,9,155,84,7,83,0,8,125,0,8,61,0,9,219,82,7,23,0,8,109,0,8,45,0,9,187,0,8,13,0,8,141,0,8,77,0,9,251,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,199,81,7,11,0,8,99,0,8,35,0,9,167,0,8,3,0,8,131,0,8,67,0,9,231,80,7,7,0,8,91,0,8,27,0,9,151,84,7,67,0,8,123,0,8,59,0,9,215,82,7,19,0,8,107,0,8,43,0,9,183,0,8,11,0,8,139,0,8,75,0,9,247,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,207,81,7,15,0,8,103,0,8,39,0,9,175,0,8,7,0,8,135,0,8,71,0,9,239,80,7,9,0,8,95,0,8,31,0,9,159,84,7,99,0,8,127,0,8,63,0,9,223,82,7,27,0,8,111,0,8,47,0,9,191,0,8,15,0,8,143,0,8,79,0,9,255],fixed_td=[80,5,1,87,5,257,83,5,17,91,5,4097,81,5,5,89,5,1025,85,5,65,93,5,16385,80,5,3,88,5,513,84,5,33,92,5,8193,82,5,9,90,5,2049,86,5,129,192,5,24577,80,5,2,87,5,385,83,5,25,91,5,6145,81,5,7,89,5,1537,85,5,97,93,5,24577,80,5,4,88,5,769,84,5,49,92,5,12289,82,5,13,90,5,3073,86,5,193,192,5,24577],cplens=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],cplext=[0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0,112,112],cpdist=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577],cpdext=[0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13];ZStream.prototype.inflateInit=function(w,nowrap){return w||(w=DEF_WBITS),nowrap&&(nowrap=!1),this.istate=new Inflate,this.istate.inflateInit(this,nowrap?-w:w)},ZStream.prototype.inflate=function(f){return null==this.istate?Z_STREAM_ERROR:this.istate.inflate(this,f)},ZStream.prototype.inflateEnd=function(){if(null==this.istate)return Z_STREAM_ERROR;var ret=istate.inflateEnd(this);return this.istate=null,ret},ZStream.prototype.inflateSync=function(){return istate.inflateSync(this);
+},ZStream.prototype.inflateSetDictionary=function(dictionary,dictLength){return istate.inflateSetDictionary(this,dictionary,dictLength)},Inflate.prototype.inflateReset=function(z){return null==z||null==z.istate?Z_STREAM_ERROR:(z.total_in=z.total_out=0,z.msg=null,z.istate.mode=0!=z.istate.nowrap?BLOCKS:METHOD,z.istate.blocks.reset(z,null),Z_OK)},Inflate.prototype.inflateEnd=function(z){return null!=this.blocks&&this.blocks.free(z),this.blocks=null,Z_OK},Inflate.prototype.inflateInit=function(z,w){return z.msg=null,this.blocks=null,nowrap=0,w<0&&(w=-w,nowrap=1),w<8||w>15?(this.inflateEnd(z),Z_STREAM_ERROR):(this.wbits=w,z.istate.blocks=new InfBlocks(z,0!=z.istate.nowrap?null:this,1<<w),this.inflateReset(z),Z_OK)},Inflate.prototype.inflate=function(z,f){var r,b;if(null==z||null==z.istate||null==z.next_in)return Z_STREAM_ERROR;for(f=f==Z_FINISH?Z_BUF_ERROR:Z_OK,r=Z_BUF_ERROR;;)switch(z.istate.mode){case METHOD:if(0==z.avail_in)return r;if(r=f,z.avail_in--,z.total_in++,(15&(z.istate.method=z.next_in[z.next_in_index++]))!=Z_DEFLATED){z.istate.mode=BAD,z.msg="unknown compression method",z.istate.marker=5;break}if((z.istate.method>>4)+8>z.istate.wbits){z.istate.mode=BAD,z.msg="invalid window size",z.istate.marker=5;break}z.istate.mode=FLAG;case FLAG:if(0==z.avail_in)return r;if(r=f,z.avail_in--,z.total_in++,b=255&z.next_in[z.next_in_index++],((z.istate.method<<8)+b)%31!=0){z.istate.mode=BAD,z.msg="incorrect header check",z.istate.marker=5;break}if(0==(b&PRESET_DICT)){z.istate.mode=BLOCKS;break}z.istate.mode=DICT4;case DICT4:if(0==z.avail_in)return r;r=f,z.avail_in--,z.total_in++,z.istate.need=(255&z.next_in[z.next_in_index++])<<24&4278190080,z.istate.mode=DICT3;case DICT3:if(0==z.avail_in)return r;r=f,z.avail_in--,z.total_in++,z.istate.need+=(255&z.next_in[z.next_in_index++])<<16&16711680,z.istate.mode=DICT2;case DICT2:if(0==z.avail_in)return r;r=f,z.avail_in--,z.total_in++,z.istate.need+=(255&z.next_in[z.next_in_index++])<<8&65280,z.istate.mode=DICT1;case DICT1:return 0==z.avail_in?r:(r=f,z.avail_in--,z.total_in++,z.istate.need+=255&z.next_in[z.next_in_index++],z.adler=z.istate.need,z.istate.mode=DICT0,Z_NEED_DICT);case DICT0:return z.istate.mode=BAD,z.msg="need dictionary",z.istate.marker=0,Z_STREAM_ERROR;case BLOCKS:if(r=z.istate.blocks.proc(z,r),r==Z_DATA_ERROR){z.istate.mode=BAD,z.istate.marker=0;break}if(r==Z_OK&&(r=f),r!=Z_STREAM_END)return r;if(r=f,z.istate.blocks.reset(z,z.istate.was),0!=z.istate.nowrap){z.istate.mode=DONE;break}z.istate.mode=CHECK4;case CHECK4:if(0==z.avail_in)return r;r=f,z.avail_in--,z.total_in++,z.istate.need=(255&z.next_in[z.next_in_index++])<<24&4278190080,z.istate.mode=CHECK3;case CHECK3:if(0==z.avail_in)return r;r=f,z.avail_in--,z.total_in++,z.istate.need+=(255&z.next_in[z.next_in_index++])<<16&16711680,z.istate.mode=CHECK2;case CHECK2:if(0==z.avail_in)return r;r=f,z.avail_in--,z.total_in++,z.istate.need+=(255&z.next_in[z.next_in_index++])<<8&65280,z.istate.mode=CHECK1;case CHECK1:if(0==z.avail_in)return r;if(r=f,z.avail_in--,z.total_in++,z.istate.need+=255&z.next_in[z.next_in_index++],z.istate.was[0]!=z.istate.need){z.istate.mode=BAD,z.msg="incorrect data check",z.istate.marker=5;break}z.istate.mode=DONE;case DONE:return Z_STREAM_END;case BAD:return Z_DATA_ERROR;default:return Z_STREAM_ERROR}},Inflate.prototype.inflateSetDictionary=function(z,dictionary,dictLength){var index=0,length=dictLength;return null==z||null==z.istate||z.istate.mode!=DICT0?Z_STREAM_ERROR:z._adler.adler32(1,dictionary,0,dictLength)!=z.adler?Z_DATA_ERROR:(z.adler=z._adler.adler32(0,null,0,0),length>=1<<z.istate.wbits&&(length=(1<<z.istate.wbits)-1,index=dictLength-length),z.istate.blocks.set_dictionary(dictionary,index,length),z.istate.mode=BLOCKS,Z_OK)};var mark=[0,0,255,255];Inflate.prototype.inflateSync=function(z){var n,p,m,r,w;if(null==z||null==z.istate)return Z_STREAM_ERROR;if(z.istate.mode!=BAD&&(z.istate.mode=BAD,z.istate.marker=0),0==(n=z.avail_in))return Z_BUF_ERROR;for(p=z.next_in_index,m=z.istate.marker;0!=n&&m<4;)z.next_in[p]==mark[m]?m++:m=0!=z.next_in[p]?0:4-m,p++,n--;return z.total_in+=p-z.next_in_index,z.next_in_index=p,z.avail_in=n,z.istate.marker=m,4!=m?Z_DATA_ERROR:(r=z.total_in,w=z.total_out,this.inflateReset(z),z.total_in=r,z.total_out=w,z.istate.mode=BLOCKS,Z_OK)},Inflate.prototype.inflateSyncPoint=function(z){return null==z||null==z.istate||null==z.istate.blocks?Z_STREAM_ERROR:z.istate.blocks.sync_point()};var INFBLOCKS_BORDER=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];InfBlocks.prototype.reset=function(z,c){c&&(c[0]=this.check),this.mode==IB_CODES&&this.codes.free(z),this.mode=IB_TYPE,this.bitk=0,this.bitb=0,this.read=this.write=0,this.checkfn&&(z.adler=this.check=z._adler.adler32(0,null,0,0))},InfBlocks.prototype.proc=function(z,r){var t,b,k,p,n,q,m;for(p=z.next_in_index,n=z.avail_in,b=this.bitb,k=this.bitk,q=this.write,m=q<this.read?this.read-q-1:this.end-q;;)switch(this.mode){case IB_TYPE:for(;k<3;){if(0==n)return this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);r=Z_OK,n--,b|=(255&z.next_in[p++])<<k,k+=8}switch(t=7&b,this.last=1&t,t>>>1){case 0:b>>>=3,k-=3,t=7&k,b>>>=t,k-=t,this.mode=IB_LENS;break;case 1:var bl=new Int32Array(1),bd=new Int32Array(1),tl=[],td=[];inflate_trees_fixed(bl,bd,tl,td,z),this.codes.init(bl[0],bd[0],tl[0],0,td[0],0,z),b>>>=3,k-=3,this.mode=IB_CODES;break;case 2:b>>>=3,k-=3,this.mode=IB_TABLE;break;case 3:return b>>>=3,k-=3,this.mode=BAD,z.msg="invalid block type",r=Z_DATA_ERROR,this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r)}break;case IB_LENS:for(;k<32;){if(0==n)return this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);r=Z_OK,n--,b|=(255&z.next_in[p++])<<k,k+=8}if((~b>>>16&65535)!=(65535&b))return this.mode=BAD,z.msg="invalid stored block lengths",r=Z_DATA_ERROR,this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);this.left=65535&b,b=k=0,this.mode=0!=left?IB_STORED:0!=this.last?IB_DRY:IB_TYPE;break;case IB_STORED:if(0==n)return this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,write=q,this.inflate_flush(z,r);if(0==m&&(q==end&&0!=read&&(q=0,m=q<this.read?this.read-q-1:this.end-q),0==m&&(this.write=q,r=this.inflate_flush(z,r),q=this.write,m=q<this.read?this.read-q-1:this.end-q,q==this.end&&0!=this.read&&(q=0,m=q<this.read?this.read-q-1:this.end-q),0==m)))return this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);if(r=Z_OK,t=this.left,t>n&&(t=n),t>m&&(t=m),arrayCopy(z.next_in,p,window,q,t),p+=t,n-=t,q+=t,m-=t,0!=(this.left-=t))break;this.mode=0!=this.last?IB_DRY:IB_TYPE;break;case IB_TABLE:for(;k<14;){if(0==n)return this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);r=Z_OK,n--,b|=(255&z.next_in[p++])<<k,k+=8}if(this.table=t=16383&b,(31&t)>29||(t>>5&31)>29)return this.mode=IB_BAD,z.msg="too many length or distance symbols",r=Z_DATA_ERROR,this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);if(t=258+(31&t)+(t>>5&31),null==this.blens||this.blens.length<t)this.blens=new Int32Array(t);else for(var i=0;i<t;i++)this.blens[i]=0;b>>>=14,k-=14,this.index=0,mode=IB_BTREE;case IB_BTREE:for(;this.index<4+(this.table>>>10);){for(;k<3;){if(0==n)return this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);r=Z_OK,n--,b|=(255&z.next_in[p++])<<k,k+=8}this.blens[INFBLOCKS_BORDER[this.index++]]=7&b,b>>>=3,k-=3}for(;this.index<19;)this.blens[INFBLOCKS_BORDER[this.index++]]=0;if(this.bb[0]=7,t=this.inftree.inflate_trees_bits(this.blens,this.bb,this.tb,this.hufts,z),t!=Z_OK)return r=t,r==Z_DATA_ERROR&&(this.blens=null,this.mode=IB_BAD),this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,write=q,this.inflate_flush(z,r);this.index=0,this.mode=IB_DTREE;case IB_DTREE:for(;;){if(t=this.table,!(this.index<258+(31&t)+(t>>5&31)))break;var i,j,c;for(t=this.bb[0];k<t;){if(0==n)return this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);r=Z_OK,n--,b|=(255&z.next_in[p++])<<k,k+=8}if(t=this.hufts[3*(this.tb[0]+(b&inflate_mask[t]))+1],c=this.hufts[3*(this.tb[0]+(b&inflate_mask[t]))+2],c<16)b>>>=t,k-=t,this.blens[this.index++]=c;else{for(i=18==c?7:c-14,j=18==c?11:3;k<t+i;){if(0==n)return this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);r=Z_OK,n--,b|=(255&z.next_in[p++])<<k,k+=8}if(b>>>=t,k-=t,j+=b&inflate_mask[i],b>>>=i,k-=i,i=this.index,t=this.table,i+j>258+(31&t)+(t>>5&31)||16==c&&i<1)return this.blens=null,this.mode=IB_BAD,z.msg="invalid bit length repeat",r=Z_DATA_ERROR,this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);c=16==c?this.blens[i-1]:0;do this.blens[i++]=c;while(0!=--j);this.index=i}}this.tb[0]=-1;var bl=new Int32Array(1),bd=new Int32Array(1),tl=new Int32Array(1),td=new Int32Array(1);if(bl[0]=9,bd[0]=6,t=this.table,t=this.inftree.inflate_trees_dynamic(257+(31&t),1+(t>>5&31),this.blens,bl,bd,tl,td,this.hufts,z),t!=Z_OK)return t==Z_DATA_ERROR&&(this.blens=null,this.mode=BAD),r=t,this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);this.codes.init(bl[0],bd[0],this.hufts,tl[0],this.hufts,td[0],z),this.mode=IB_CODES;case IB_CODES:if(this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,(r=this.codes.proc(this,z,r))!=Z_STREAM_END)return this.inflate_flush(z,r);if(r=Z_OK,this.codes.free(z),p=z.next_in_index,n=z.avail_in,b=this.bitb,k=this.bitk,q=this.write,m=q<this.read?this.read-q-1:this.end-q,0==this.last){this.mode=IB_TYPE;break}this.mode=IB_DRY;case IB_DRY:if(this.write=q,r=this.inflate_flush(z,r),q=this.write,m=q<this.read?this.read-q-1:this.end-q,this.read!=this.write)return this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);mode=DONE;case IB_DONE:return r=Z_STREAM_END,this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);case IB_BAD:return r=Z_DATA_ERROR,this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r);default:return r=Z_STREAM_ERROR,this.bitb=b,this.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,this.write=q,this.inflate_flush(z,r)}},InfBlocks.prototype.free=function(z){this.reset(z,null),this.window=null,this.hufts=null},InfBlocks.prototype.set_dictionary=function(d,start,n){arrayCopy(d,start,window,0,n),this.read=this.write=n},InfBlocks.prototype.sync_point=function(){return this.mode==IB_LENS},InfBlocks.prototype.inflate_flush=function(z,r){var n,p,q;return p=z.next_out_index,q=this.read,n=(q<=this.write?this.write:this.end)-q,n>z.avail_out&&(n=z.avail_out),0!=n&&r==Z_BUF_ERROR&&(r=Z_OK),z.avail_out-=n,z.total_out+=n,null!=this.checkfn&&(z.adler=this.check=z._adler.adler32(this.check,this.window,q,n)),arrayCopy(this.window,q,z.next_out,p,n),p+=n,q+=n,q==this.end&&(q=0,this.write==this.end&&(this.write=0),n=this.write-q,n>z.avail_out&&(n=z.avail_out),0!=n&&r==Z_BUF_ERROR&&(r=Z_OK),z.avail_out-=n,z.total_out+=n,null!=this.checkfn&&(z.adler=this.check=z._adler.adler32(this.check,this.window,q,n)),arrayCopy(this.window,q,z.next_out,p,n),p+=n,q+=n),z.next_out_index=p,this.read=q,r};var IC_START=0,IC_LEN=1,IC_LENEXT=2,IC_DIST=3,IC_DISTEXT=4,IC_COPY=5,IC_LIT=6,IC_WASH=7,IC_END=8,IC_BADCODE=9;InfCodes.prototype.init=function(bl,bd,tl,tl_index,td,td_index,z){this.mode=IC_START,this.lbits=bl,this.dbits=bd,this.ltree=tl,this.ltree_index=tl_index,this.dtree=td,this.dtree_index=td_index,this.tree=null},InfCodes.prototype.proc=function(s,z,r){var j,tindex,e,n,q,m,f,b=0,k=0,p=0;for(p=z.next_in_index,n=z.avail_in,b=s.bitb,k=s.bitk,q=s.write,m=q<s.read?s.read-q-1:s.end-q;;)switch(this.mode){case IC_START:if(m>=258&&n>=10&&(s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,r=this.inflate_fast(this.lbits,this.dbits,this.ltree,this.ltree_index,this.dtree,this.dtree_index,s,z),p=z.next_in_index,n=z.avail_in,b=s.bitb,k=s.bitk,q=s.write,m=q<s.read?s.read-q-1:s.end-q,r!=Z_OK)){this.mode=r==Z_STREAM_END?IC_WASH:IC_BADCODE;break}this.need=this.lbits,this.tree=this.ltree,this.tree_index=this.ltree_index,this.mode=IC_LEN;case IC_LEN:for(j=this.need;k<j;){if(0==n)return s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);r=Z_OK,n--,b|=(255&z.next_in[p++])<<k,k+=8}if(tindex=3*(this.tree_index+(b&inflate_mask[j])),b>>>=this.tree[tindex+1],k-=this.tree[tindex+1],e=this.tree[tindex],0==e){this.lit=this.tree[tindex+2],this.mode=IC_LIT;break}if(0!=(16&e)){this.get=15&e,this.len=this.tree[tindex+2],this.mode=IC_LENEXT;break}if(0==(64&e)){this.need=e,this.tree_index=tindex/3+this.tree[tindex+2];break}if(0!=(32&e)){this.mode=IC_WASH;break}return this.mode=IC_BADCODE,z.msg="invalid literal/length code",r=Z_DATA_ERROR,s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);case IC_LENEXT:for(j=this.get;k<j;){if(0==n)return s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);r=Z_OK,n--,b|=(255&z.next_in[p++])<<k,k+=8}this.len+=b&inflate_mask[j],b>>=j,k-=j,this.need=this.dbits,this.tree=this.dtree,this.tree_index=this.dtree_index,this.mode=IC_DIST;case IC_DIST:for(j=this.need;k<j;){if(0==n)return s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);r=Z_OK,n--,b|=(255&z.next_in[p++])<<k,k+=8}if(tindex=3*(this.tree_index+(b&inflate_mask[j])),b>>=this.tree[tindex+1],k-=this.tree[tindex+1],e=this.tree[tindex],0!=(16&e)){this.get=15&e,this.dist=this.tree[tindex+2],this.mode=IC_DISTEXT;break}if(0==(64&e)){this.need=e,this.tree_index=tindex/3+this.tree[tindex+2];break}return this.mode=IC_BADCODE,z.msg="invalid distance code",r=Z_DATA_ERROR,s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);case IC_DISTEXT:for(j=this.get;k<j;){if(0==n)return s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);r=Z_OK,n--,b|=(255&z.next_in[p++])<<k,k+=8}this.dist+=b&inflate_mask[j],b>>=j,k-=j,this.mode=IC_COPY;case IC_COPY:for(f=q-this.dist;f<0;)f+=s.end;for(;0!=this.len;){if(0==m&&(q==s.end&&0!=s.read&&(q=0,m=q<s.read?s.read-q-1:s.end-q),0==m&&(s.write=q,r=s.inflate_flush(z,r),q=s.write,m=q<s.read?s.read-q-1:s.end-q,q==s.end&&0!=s.read&&(q=0,m=q<s.read?s.read-q-1:s.end-q),0==m)))return s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);s.window[q++]=s.window[f++],m--,f==s.end&&(f=0),this.len--}this.mode=IC_START;break;case IC_LIT:if(0==m&&(q==s.end&&0!=s.read&&(q=0,m=q<s.read?s.read-q-1:s.end-q),0==m&&(s.write=q,r=s.inflate_flush(z,r),q=s.write,m=q<s.read?s.read-q-1:s.end-q,q==s.end&&0!=s.read&&(q=0,m=q<s.read?s.read-q-1:s.end-q),0==m)))return s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);r=Z_OK,s.window[q++]=this.lit,m--,this.mode=IC_START;break;case IC_WASH:if(k>7&&(k-=8,n++,p--),s.write=q,r=s.inflate_flush(z,r),q=s.write,m=q<s.read?s.read-q-1:s.end-q,s.read!=s.write)return s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);this.mode=IC_END;case IC_END:return r=Z_STREAM_END,s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);case IC_BADCODE:return r=Z_DATA_ERROR,s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r);default:return r=Z_STREAM_ERROR,s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,s.inflate_flush(z,r)}},InfCodes.prototype.free=function(z){},InfCodes.prototype.inflate_fast=function(bl,bd,tl,tl_index,td,td_index,s,z){var t,tp,tp_index,e,b,k,p,n,q,m,ml,md,c,d,r,tp_index_t_3;p=z.next_in_index,n=z.avail_in,b=s.bitb,k=s.bitk,q=s.write,m=q<s.read?s.read-q-1:s.end-q,ml=inflate_mask[bl],md=inflate_mask[bd];do{for(;k<20;)n--,b|=(255&z.next_in[p++])<<k,k+=8;if(t=b&ml,tp=tl,tp_index=tl_index,tp_index_t_3=3*(tp_index+t),0!=(e=tp[tp_index_t_3]))for(;;){if(b>>=tp[tp_index_t_3+1],k-=tp[tp_index_t_3+1],0!=(16&e)){for(e&=15,c=tp[tp_index_t_3+2]+(b&inflate_mask[e]),b>>=e,k-=e;k<15;)n--,b|=(255&z.next_in[p++])<<k,k+=8;for(t=b&md,tp=td,tp_index=td_index,tp_index_t_3=3*(tp_index+t),e=tp[tp_index_t_3];;){if(b>>=tp[tp_index_t_3+1],k-=tp[tp_index_t_3+1],0!=(16&e)){for(e&=15;k<e;)n--,b|=(255&z.next_in[p++])<<k,k+=8;if(d=tp[tp_index_t_3+2]+(b&inflate_mask[e]),b>>=e,k-=e,m-=c,q>=d)r=q-d,q-r>0&&2>q-r?(s.window[q++]=s.window[r++],s.window[q++]=s.window[r++],c-=2):(s.window[q++]=s.window[r++],s.window[q++]=s.window[r++],c-=2);else{r=q-d;do r+=s.end;while(r<0);if(e=s.end-r,c>e){if(c-=e,q-r>0&&e>q-r){do s.window[q++]=s.window[r++];while(0!=--e)}else arrayCopy(s.window,r,s.window,q,e),q+=e,r+=e,e=0;r=0}}do s.window[q++]=s.window[r++];while(0!=--c);break}if(0!=(64&e))return z.msg="invalid distance code",c=z.avail_in-n,c=k>>3<c?k>>3:c,n+=c,p-=c,k-=c<<3,s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,Z_DATA_ERROR;t+=tp[tp_index_t_3+2],t+=b&inflate_mask[e],tp_index_t_3=3*(tp_index+t),e=tp[tp_index_t_3]}break}if(0!=(64&e))return 0!=(32&e)?(c=z.avail_in-n,c=k>>3<c?k>>3:c,n+=c,p-=c,k-=c<<3,s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,Z_STREAM_END):(z.msg="invalid literal/length code",c=z.avail_in-n,c=k>>3<c?k>>3:c,n+=c,p-=c,k-=c<<3,s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,Z_DATA_ERROR);if(t+=tp[tp_index_t_3+2],t+=b&inflate_mask[e],tp_index_t_3=3*(tp_index+t),0==(e=tp[tp_index_t_3])){b>>=tp[tp_index_t_3+1],k-=tp[tp_index_t_3+1],s.window[q++]=tp[tp_index_t_3+2],m--;break}}else b>>=tp[tp_index_t_3+1],k-=tp[tp_index_t_3+1],s.window[q++]=tp[tp_index_t_3+2],m--}while(m>=258&&n>=10);return c=z.avail_in-n,c=k>>3<c?k>>3:c,n+=c,p-=c,k-=c<<3,s.bitb=b,s.bitk=k,z.avail_in=n,z.total_in+=p-z.next_in_index,z.next_in_index=p,s.write=q,Z_OK},InfTree.prototype.huft_build=function(b,bindex,n,s,d,e,t,m,hp,hn,v){var a,f,g,h,i,j,k,l,mask,p,q,w,xp,y,z;p=0,i=n;do this.c[b[bindex+p]]++,p++,i--;while(0!=i);if(this.c[0]==n)return t[0]=-1,m[0]=0,Z_OK;for(l=m[0],j=1;j<=BMAX&&0==this.c[j];j++);for(k=j,l<j&&(l=j),i=BMAX;0!=i&&0==this.c[i];i--);for(g=i,l>i&&(l=i),m[0]=l,y=1<<j;j<i;j++,y<<=1)if((y-=this.c[j])<0)return Z_DATA_ERROR;if((y-=this.c[i])<0)return Z_DATA_ERROR;for(this.c[i]+=y,this.x[1]=j=0,p=1,xp=2;0!=--i;)this.x[xp]=j+=this.c[p],xp++,p++;i=0,p=0;do 0!=(j=b[bindex+p])&&(this.v[this.x[j]++]=i),p++;while(++i<n);for(n=this.x[g],this.x[0]=i=0,p=0,h=-1,w=-l,this.u[0]=0,q=0,z=0;k<=g;k++)for(a=this.c[k];0!=a--;){for(;k>w+l;){if(h++,w+=l,z=g-w,z=z>l?l:z,(f=1<<(j=k-w))>a+1&&(f-=a+1,xp=k,j<z))for(;++j<z&&!((f<<=1)<=this.c[++xp]);)f-=this.c[xp];if(z=1<<j,this.hn[0]+z>MANY)return Z_DATA_ERROR;this.u[h]=q=this.hn[0],this.hn[0]+=z,0!=h?(this.x[h]=i,this.r[0]=j,this.r[1]=l,j=i>>>w-l,this.r[2]=q-this.u[h-1]-j,arrayCopy(this.r,0,hp,3*(this.u[h-1]+j),3)):t[0]=q}for(this.r[1]=k-w,p>=n?this.r[0]=192:v[p]<s?(this.r[0]=this.v[p]<256?0:96,this.r[2]=this.v[p++]):(this.r[0]=e[this.v[p]-s]+16+64,this.r[2]=d[this.v[p++]-s]),f=1<<k-w,j=i>>>w;j<z;j+=f)arrayCopy(this.r,0,hp,3*(q+j),3);for(j=1<<k-1;0!=(i&j);j>>>=1)i^=j;for(i^=j,mask=(1<<w)-1;(i&mask)!=this.x[h];)h--,w-=l,mask=(1<<w)-1}return 0!=y&&1!=g?Z_BUF_ERROR:Z_OK},InfTree.prototype.inflate_trees_bits=function(c,bb,tb,hp,z){var result;return this.initWorkArea(19),this.hn[0]=0,result=this.huft_build(c,0,19,19,null,null,tb,bb,hp,this.hn,this.v),result==Z_DATA_ERROR?z.msg="oversubscribed dynamic bit lengths tree":result!=Z_BUF_ERROR&&0!=bb[0]||(z.msg="incomplete dynamic bit lengths tree",result=Z_DATA_ERROR),result},InfTree.prototype.inflate_trees_dynamic=function(nl,nd,c,bl,bd,tl,td,hp,z){var result;return this.initWorkArea(288),this.hn[0]=0,result=this.huft_build(c,0,nl,257,cplens,cplext,tl,bl,hp,this.hn,this.v),result!=Z_OK||0==bl[0]?(result==Z_DATA_ERROR?z.msg="oversubscribed literal/length tree":result!=Z_MEM_ERROR&&(z.msg="incomplete literal/length tree",result=Z_DATA_ERROR),result):(this.initWorkArea(288),result=this.huft_build(c,nl,nd,0,cpdist,cpdext,td,bd,hp,this.hn,this.v),result!=Z_OK||0==bd[0]&&nl>257?(result==Z_DATA_ERROR?z.msg="oversubscribed distance tree":result==Z_BUF_ERROR?(z.msg="incomplete distance tree",result=Z_DATA_ERROR):result!=Z_MEM_ERROR&&(z.msg="empty distance tree with lengths",result=Z_DATA_ERROR),result):Z_OK)},InfTree.prototype.initWorkArea=function(vsize){null==this.hn&&(this.hn=new Int32Array(1),this.v=new Int32Array(vsize),this.c=new Int32Array(BMAX+1),this.r=new Int32Array(3),this.u=new Int32Array(BMAX),this.x=new Int32Array(BMAX+1)),this.v.length<vsize&&(this.v=new Int32Array(vsize));for(var i=0;i<vsize;i++)this.v[i]=0;for(var i=0;i<BMAX+1;i++)this.c[i]=0;for(var i=0;i<3;i++)this.r[i]=0;arrayCopy(this.c,0,this.u,0,BMAX),arrayCopy(this.c,0,this.x,0,BMAX+1)};var testArray=new Uint8Array(1),hasSubarray="function"==typeof testArray.subarray,ADLER_BASE=65521,ADLER_NMAX=5552;!function(factory){factory(jQuery)}(function($){function handler(event){var orgEvent=event||window.event,args=slice.call(arguments,1),delta=0,deltaX=0,deltaY=0,absDelta=0,offsetX=0,offsetY=0;if(event=$.event.fix(orgEvent),event.type="mousewheel","detail"in orgEvent&&(deltaY=orgEvent.detail*-1),"wheelDelta"in orgEvent&&(deltaY=orgEvent.wheelDelta),"wheelDeltaY"in orgEvent&&(deltaY=orgEvent.wheelDeltaY),"wheelDeltaX"in orgEvent&&(deltaX=orgEvent.wheelDeltaX*-1),"axis"in orgEvent&&orgEvent.axis===orgEvent.HORIZONTAL_AXIS&&(deltaX=deltaY*-1,deltaY=0),delta=0===deltaY?deltaX:deltaY,"deltaY"in orgEvent&&(deltaY=orgEvent.deltaY*-1,delta=deltaY),"deltaX"in orgEvent&&(deltaX=orgEvent.deltaX,0===deltaY&&(delta=deltaX*-1)),0!==deltaY||0!==deltaX){if(1===orgEvent.deltaMode){var lineHeight=$.data(this,"mousewheel-line-height");delta*=lineHeight,deltaY*=lineHeight,deltaX*=lineHeight}else if(2===orgEvent.deltaMode){var pageHeight=$.data(this,"mousewheel-page-height");delta*=pageHeight,deltaY*=pageHeight,deltaX*=pageHeight}if(absDelta=Math.max(Math.abs(deltaY),Math.abs(deltaX)),(!lowestDelta||absDelta<lowestDelta)&&(lowestDelta=absDelta,shouldAdjustOldDeltas(orgEvent,absDelta)&&(lowestDelta/=40)),shouldAdjustOldDeltas(orgEvent,absDelta)&&(delta/=40,deltaX/=40,deltaY/=40),delta=Math[delta>=1?"floor":"ceil"](delta/lowestDelta),deltaX=Math[deltaX>=1?"floor":"ceil"](deltaX/lowestDelta),deltaY=Math[deltaY>=1?"floor":"ceil"](deltaY/lowestDelta),special.settings.normalizeOffset&&this.getBoundingClientRect){var boundingRect=this.getBoundingClientRect();offsetX=event.clientX-boundingRect.left,offsetY=event.clientY-boundingRect.top}return event.deltaX=deltaX,event.deltaY=deltaY,event.deltaFactor=lowestDelta,event.offsetX=offsetX,event.offsetY=offsetY,event.deltaMode=0,args.unshift(event,delta,deltaX,deltaY),nullLowestDeltaTimeout&&clearTimeout(nullLowestDeltaTimeout),nullLowestDeltaTimeout=setTimeout(nullLowestDelta,200),($.event.dispatch||$.event.handle).apply(this,args)}}function nullLowestDelta(){lowestDelta=null}function shouldAdjustOldDeltas(orgEvent,absDelta){return special.settings.adjustOldDeltas&&"mousewheel"===orgEvent.type&&absDelta%120===0}var nullLowestDeltaTimeout,lowestDelta,toFix=["wheel","mousewheel","DOMMouseScroll","MozMousePixelScroll"],toBind="onwheel"in document||document.documentMode>=9?["wheel"]:["mousewheel","DomMouseScroll","MozMousePixelScroll"],slice=Array.prototype.slice;if($.event.fixHooks)for(var i=toFix.length;i;)$.event.fixHooks[toFix[--i]]=$.event.mouseHooks;var special=$.event.special.mousewheel={version:"3.1.12",setup:function(){if(this.addEventListener)for(var i=toBind.length;i;)this.addEventListener(toBind[--i],handler,!1);else this.onmousewheel=handler;$.data(this,"mousewheel-line-height",special.getLineHeight(this)),$.data(this,"mousewheel-page-height",special.getPageHeight(this))},teardown:function(){if(this.removeEventListener)for(var i=toBind.length;i;)this.removeEventListener(toBind[--i],handler,!1);else this.onmousewheel=null;$.removeData(this,"mousewheel-line-height"),$.removeData(this,"mousewheel-page-height")},getLineHeight:function(elem){var $elem=$(elem),$parent=$elem["offsetParent"in $.fn?"offsetParent":"parent"]();return $parent.length||($parent=$("body")),parseInt($parent.css("fontSize"),10)||parseInt($elem.css("fontSize"),10)||16},getPageHeight:function(elem){return $(elem).height()},settings:{adjustOldDeltas:!0,normalizeOffset:!0}};$.fn.extend({mousewheel:function(fn){return fn?this.bind("mousewheel",fn):this.trigger("mousewheel")},unmousewheel:function(fn){return this.unbind("mousewheel",fn)}})}),function(global){function isArray(value){return"[object Array]"===Object.prototype.toString.call(value)}function asyncFlush(){for(var i=0;i<asyncQueue.length;i++)asyncQueue[i][0](asyncQueue[i][1]);asyncQueue=[],asyncTimer=!1}function asyncCall(callback,arg){asyncQueue.push([callback,arg]),asyncTimer||(asyncTimer=!0,asyncSetTimer(asyncFlush,0))}function invokeResolver(resolver,promise){function resolvePromise(value){resolve(promise,value)}function rejectPromise(reason){reject(promise,reason)}try{resolver(resolvePromise,rejectPromise)}catch(e){rejectPromise(e)}}function invokeCallback(subscriber){var owner=subscriber.owner,settled=owner.state_,value=owner.data_,callback=subscriber[settled],promise=subscriber.then;if("function"==typeof callback){settled=FULFILLED;try{value=callback(value)}catch(e){reject(promise,e)}}handleThenable(promise,value)||(settled===FULFILLED&&resolve(promise,value),settled===REJECTED&&reject(promise,value))}function handleThenable(promise,value){var resolved;try{if(promise===value)throw new TypeError("A promises callback cannot return that same promise.");if(value&&("function"==typeof value||"object"==typeof value)){var then=value.then;if("function"==typeof then)return then.call(value,function(val){resolved||(resolved=!0,value!==val?resolve(promise,val):fulfill(promise,val))},function(reason){resolved||(resolved=!0,reject(promise,reason))}),!0}}catch(e){return resolved||reject(promise,e),!0}return!1}function resolve(promise,value){promise!==value&&handleThenable(promise,value)||fulfill(promise,value)}function fulfill(promise,value){promise.state_===PENDING&&(promise.state_=SEALED,promise.data_=value,asyncCall(publishFulfillment,promise))}function reject(promise,reason){promise.state_===PENDING&&(promise.state_=SEALED,promise.data_=reason,asyncCall(publishRejection,promise))}function publish(promise){var callbacks=promise.then_;promise.then_=void 0;for(var i=0;i<callbacks.length;i++)invokeCallback(callbacks[i])}function publishFulfillment(promise){promise.state_=FULFILLED,publish(promise)}function publishRejection(promise){promise.state_=REJECTED,publish(promise)}function Promise(resolver){if("function"!=typeof resolver)throw new TypeError("Promise constructor takes a function argument");if(this instanceof Promise==!1)throw new TypeError("Failed to construct 'Promise': Please use the 'new' operator, this object constructor cannot be called as a function.");this.then_=[],invokeResolver(resolver,this)}var NativePromise=global.Promise,nativePromiseSupported=NativePromise&&"resolve"in NativePromise&&"reject"in NativePromise&&"all"in NativePromise&&"race"in NativePromise&&function(){var resolve;return new NativePromise(function(r){resolve=r}),"function"==typeof resolve}();nativePromiseSupported||(global.Promise=Promise);var asyncTimer,PENDING="pending",SEALED="sealed",FULFILLED="fulfilled",REJECTED="rejected",NOOP=function(){},asyncSetTimer="undefined"!=typeof setImmediate?setImmediate:setTimeout,asyncQueue=[];Promise.prototype={constructor:Promise,state_:PENDING,then_:null,data_:void 0,then:function(onFulfillment,onRejection){var subscriber={owner:this,then:new this.constructor(NOOP),fulfilled:onFulfillment,rejected:onRejection};return this.state_===FULFILLED||this.state_===REJECTED?asyncCall(invokeCallback,subscriber):this.then_.push(subscriber),subscriber.then},catch:function(onRejection){return this.then(null,onRejection)}},Promise.all=function(promises){var Class=this;if(!isArray(promises))throw new TypeError("You must pass an array to Promise.all().");return new Class(function(resolve,reject){function resolver(index){return remaining++,function(value){results[index]=value,--remaining||resolve(results)}}for(var promise,results=[],remaining=0,i=0;i<promises.length;i++)promise=promises[i],promise&&"function"==typeof promise.then?promise.then(resolver(i),reject):results[i]=promise;remaining||resolve(results)})},Promise.race=function(promises){var Class=this;if(!isArray(promises))throw new TypeError("You must pass an array to Promise.race().");return new Class(function(resolve,reject){for(var promise,i=0;i<promises.length;i++)promise=promises[i],promise&&"function"==typeof promise.then?promise.then(resolve,reject):resolve(promise)})},Promise.resolve=function(value){var Class=this;return value&&"object"==typeof value&&value.constructor===Class?value:new Class(function(resolve){resolve(value)})},Promise.reject=function(reason){var Class=this;return new Class(function(resolve,reject){reject(reason)})}}("undefined"!=typeof window?window:"undefined"!=typeof global?global:"undefined"!=typeof self?self:this);var igv=function(igv){function canBePaired(alignment){return alignment.isPaired()&&alignment.mate&&alignment.isMateMapped()&&alignment.chr===alignment.mate.chr&&(alignment.isFirstOfPair()||alignment.isSecondOfPair())&&!(alignment.isSecondary()||alignment.isSupplementary())}function finishBucket(){this.alignments=this.alignments.concat(this.currentBucket.alignments),this.currentBucket.downsampledCount>0&&this.downsampledIntervals.push(new DownsampledInterval(this.currentBucket.start,this.currentBucket.end,this.currentBucket.downsampledCount)),this.paired=this.paired||this.currentBucket.paired}function DownsampleBucket(start,end,alignmentContainer){this.start=start,this.end=end,this.alignments=[],this.downsampledCount=0,this.samplingDepth=alignmentContainer.samplingDepth,this.pairsSupported=alignmentContainer.pairsSupported,this.downsampledReads=alignmentContainer.downsampledReads,this.pairsCache=alignmentContainer.pairsCache}function CoverageMap(chr,start,end){this.chr=chr,this.bpStart=start,this.length=end-start,this.coverage=new Array(this.length),this.maximum=0,this.threshold=.2,this.qualityWeight=!0}function Coverage(){this.posA=0,this.negA=0,this.posT=0,this.negT=0,this.posC=0,this.negC=0,this.posG=0,this.negG=0,this.posN=0,this.negN=0,this.pos=0,this.neg=0,this.qualA=0,this.qualT=0,this.qualC=0,this.qualG=0,this.qualN=0,this.qual=0,this.total=0}return igv.AlignmentContainer=function(chr,start,end,samplingWindowSize,samplingDepth,pairsSupported){this.chr=chr,this.start=Math.floor(start),this.end=Math.ceil(end),this.length=end-start,this.coverageMap=new CoverageMap(chr,start,end),this.alignments=[],this.downsampledIntervals=[],this.samplingWindowSize=void 0===samplingWindowSize?100:samplingWindowSize,this.samplingDepth=void 0===samplingDepth?50:samplingDepth,this.pairsSupported=void 0===pairsSupported||pairsSupported,this.paired=!1,this.pairsCache={},this.downsampledReads=new Set,this.currentBucket=new DownsampleBucket(this.start,this.start+this.samplingWindowSize,this),this.filter=function(alignment){
+return alignment.isMapped()&&!alignment.isFailsVendorQualityCheck()}},igv.AlignmentContainer.prototype.push=function(alignment){this.filter(alignment)!==!1&&(this.coverageMap.incCounts(alignment),this.pairsSupported&&this.downsampledReads.has(alignment.readName)||(alignment.start>=this.currentBucket.end&&(finishBucket.call(this),this.currentBucket=new DownsampleBucket(alignment.start,alignment.start+this.samplingWindowSize,this)),this.currentBucket.addAlignment(alignment)))},igv.AlignmentContainer.prototype.forEach=function(callback){this.alignments.forEach(callback)},igv.AlignmentContainer.prototype.finish=function(){if(void 0!==this.currentBucket&&finishBucket.call(this),this.pairsSupported){var tmp=[],ds=this.downsampledReads;this.alignments.forEach(function(a){ds.has(a.readName)||tmp.push(a)}),this.alignments=tmp}this.alignments.sort(function(a,b){return a.start-b.start}),this.pairsCache=void 0,this.downsampledReads=void 0},igv.AlignmentContainer.prototype.contains=function(chr,start,end){return this.chr==chr&&this.start<=start&&this.end>=end},igv.AlignmentContainer.prototype.hasDownsampledIntervals=function(){return this.downsampledIntervals&&this.downsampledIntervals.length>0},DownsampleBucket.prototype.addAlignment=function(alignment){var samplingProb,idx,replacedAlignment,pairedAlignment;this.alignments.length<this.samplingDepth?this.pairsSupported&&canBePaired(alignment)?(pairedAlignment=this.pairsCache[alignment.readName],pairedAlignment?(pairedAlignment.setSecondAlignment(alignment),this.pairsCache[alignment.readName]=void 0):(pairedAlignment=new igv.PairedAlignment(alignment),this.paired=!0,this.pairsCache[alignment.readName]=pairedAlignment,this.alignments.push(pairedAlignment))):this.alignments.push(alignment):(samplingProb=this.samplingDepth/(this.samplingDepth+this.downsampledCount+1),Math.random()<samplingProb?(idx=Math.floor(Math.random()*(this.alignments.length-1)),replacedAlignment=this.alignments[idx],this.pairsSupported&&canBePaired(alignment)?(void 0!==this.pairsCache[replacedAlignment.readName]&&(this.pairsCache[replacedAlignment.readName]=void 0),pairedAlignment=new igv.PairedAlignment(alignment),this.paired=!0,this.pairsCache[alignment.readName]=pairedAlignment,this.alignments[idx]=pairedAlignment):this.alignments[idx]=alignment,this.downsampledReads.add(replacedAlignment.readName)):this.downsampledReads.add(alignment.readName),this.downsampledCount++)},CoverageMap.prototype.incCounts=function(alignment){function incBlockCount(block){var key,base,i,j,q;for(i=block.start-self.bpStart,j=0;j<block.len;i++,j++)self.coverage[i]||(self.coverage[i]=new Coverage),base=block.seq.charAt(j),key=alignment.strand?"pos"+base:"neg"+base,q=block.qual[j],self.coverage[i][key]+=1,self.coverage[i]["qual"+base]+=q,self.coverage[i].total+=1,self.coverage[i].qual+=q,self.maximum=Math.max(self.coverage[i].total,self.maximum)}var self=this;void 0===alignment.blocks?incBlockCount(alignment):alignment.blocks.forEach(function(block){incBlockCount(block)})},Coverage.prototype.isMismatch=function(refBase){var mismatchQualitySum,myself=this,threshold=igv.CoverageMap.threshold*(igv.CoverageMap.qualityWeight&&this.qual?this.qual:this.total);return mismatchQualitySum=0,["A","T","C","G"].forEach(function(base){base!==refBase&&(mismatchQualitySum+=igv.CoverageMap.qualityWeight&&myself.qual?myself["qual"+base]:myself["pos"+base]+myself["neg"+base])}),mismatchQualitySum>=threshold},DownsampledInterval=function(start,end,counts){this.start=start,this.end=end,this.counts=counts},DownsampledInterval.prototype.popupData=function(genomicLocation){return[{name:"start",value:this.start+1},{name:"end",value:this.end},{name:"# downsampled:",value:this.counts}]},igv}(igv||{}),igv=function(igv){function readInt(ba,offset){return ba[offset+3]<<24|ba[offset+2]<<16|ba[offset+1]<<8|ba[offset]}function readShort(ba,offset){return ba[offset+1]<<8|ba[offset]}function readFloat(ba,offset){var dataView=new DataView(ba.buffer),littleEndian=!0;return dataView.getFloat32(offset,littleEndian)}var READ_PAIRED_FLAG=1,PROPER_PAIR_FLAG=2,READ_UNMAPPED_FLAG=4,MATE_UNMAPPED_FLAG=8,READ_STRAND_FLAG=16,MATE_STRAND_FLAG=32,FIRST_OF_PAIR_FLAG=64,SECOND_OF_PAIR_FLAG=128,SECONDARY_ALIGNMNET_FLAG=256,READ_FAILS_VENDOR_QUALITY_CHECK_FLAG=512,DUPLICATE_READ_FLAG=1024,SUPPLEMENTARY_ALIGNMENT_FLAG=2048;return igv.BamAlignment=function(){this.hidden=!1},igv.BamAlignment.prototype.isMapped=function(){return 0==(this.flags&READ_UNMAPPED_FLAG)},igv.BamAlignment.prototype.isPaired=function(){return 0!=(this.flags&READ_PAIRED_FLAG)},igv.BamAlignment.prototype.isProperPair=function(){return 0!=(this.flags&PROPER_PAIR_FLAG)},igv.BamAlignment.prototype.isFirstOfPair=function(){return 0!=(this.flags&FIRST_OF_PAIR_FLAG)},igv.BamAlignment.prototype.isSecondOfPair=function(){return 0!=(this.flags&SECOND_OF_PAIR_FLAG)},igv.BamAlignment.prototype.isSecondary=function(){return 0!=(this.flags&SECONDARY_ALIGNMNET_FLAG)},igv.BamAlignment.prototype.isSupplementary=function(){return 0!=(this.flags&SUPPLEMENTARY_ALIGNMENT_FLAG)},igv.BamAlignment.prototype.isFailsVendorQualityCheck=function(){return 0!=(this.flags&READ_FAILS_VENDOR_QUALITY_CHECK_FLAG)},igv.BamAlignment.prototype.isDuplicate=function(){return 0!=(this.flags&DUPLICATE_READ_FLAG)},igv.BamAlignment.prototype.isMateMapped=function(){return 0==(this.flags&MATE_UNMAPPED_FLAG)},igv.BamAlignment.prototype.isNegativeStrand=function(){return 0!=(this.flags&READ_STRAND_FLAG)},igv.BamAlignment.prototype.isMateNegativeStrand=function(){return 0!=(this.flags&MATE_STRAND_FLAG)},igv.BamAlignment.prototype.tags=function(){function decodeTags(ba){for(var p=0,len=ba.length,tags={};p<len;){var value,tag=String.fromCharCode(ba[p])+String.fromCharCode(ba[p+1]),type=String.fromCharCode(ba[p+2]);if("A"==type)value=String.fromCharCode(ba[p+3]),p+=4;else if("i"===type||"I"===type)value=readInt(ba,p+3),p+=7;else if("c"===type||"C"===type)value=ba[p+3],p+=4;else if("s"===type||"S"===type)value=readShort(ba,p+3),p+=5;else if("f"===type)value=readFloat(ba,p+3),p+=7;else{if("Z"!==type){value="Error unknown type: "+type,tags[tag]=value;break}for(p+=3,value="";;){var cc=ba[p++];if(0===cc)break;value+=String.fromCharCode(cc)}}tags[tag]=value}return tags}return this.tagDict||(this.tagBA?(this.tagDict=decodeTags(this.tagBA),this.tagBA=void 0):this.tagDict={}),this.tagDict},igv.BamAlignment.prototype.popupData=function(genomicLocation){function yesNo(bool){return bool?"Yes":"No"}var isFirst,tagDict,nameValues=[];if(this.insertions)for(var i=0;i<this.insertions.length;i+=1){var ins_start=this.insertions[i].start;if(genomicLocation==ins_start||genomicLocation==ins_start-1)return nameValues.push({name:"Insertion",value:this.insertions[i].seq}),nameValues.push({name:"Location",value:ins_start}),nameValues}nameValues.push({name:"Read Name",value:this.readName}),nameValues.push("<hr>"),nameValues.push({name:"Alignment Start",value:igv.numberFormatter(1+this.start),borderTop:!0}),nameValues.push({name:"Read Strand",value:!0===this.strand?"(+)":"(-)",borderTop:!0}),nameValues.push({name:"Cigar",value:this.cigar}),nameValues.push({name:"Mapped",value:yesNo(this.isMapped())}),nameValues.push({name:"Mapping Quality",value:this.mq}),nameValues.push({name:"Secondary",value:yesNo(this.isSecondary())}),nameValues.push({name:"Supplementary",value:yesNo(this.isSupplementary())}),nameValues.push({name:"Duplicate",value:yesNo(this.isDuplicate())}),nameValues.push({name:"Failed QC",value:yesNo(this.isFailsVendorQualityCheck())}),this.isPaired()&&(nameValues.push("<hr>"),nameValues.push({name:"First in Pair",value:!this.isSecondOfPair(),borderTop:!0}),nameValues.push({name:"Mate is Mapped",value:yesNo(this.isMateMapped())}),this.isMateMapped()&&(nameValues.push({name:"Mate Chromosome",value:this.mate.chr}),nameValues.push({name:"Mate Start",value:this.mate.position+1}),nameValues.push({name:"Mate Strand",value:!0===this.mate.strand?"(+)":"(-)"}),nameValues.push({name:"Insert Size",value:this.fragmentLength}))),nameValues.push("<hr>"),tagDict=this.tags(),isFirst=!0;for(var key in tagDict)tagDict.hasOwnProperty(key)&&(isFirst?(nameValues.push({name:key,value:tagDict[key],borderTop:!0}),isFirst=!1):nameValues.push({name:key,value:tagDict[key]}));return nameValues},igv.BamFilter=function(options){options||(options={}),this.vendorFailed=void 0===options.vendorFailed||options.vendorFailed,this.duplicates=void 0===options.duplicates||options.duplicates,this.secondary=options.secondary||!1,this.supplementary=options.supplementary||!1,this.mqThreshold=void 0===options.mqThreshold?0:options.mqThreshold},igv.BamFilter.prototype.pass=function(alignment){return(!this.vendorFailed||!alignment.isFailsVendorQualityCheck())&&((!this.duplicates||!alignment.isDuplicate())&&((!this.secondary||!alignment.isSecondary())&&((!this.supplementary||!alignment.isSupplementary())&&!(alignment.mq<this.mqThreshold))))},igv}(igv||{}),igv=function(igv){return igv.BamAlignmentRow=function(){this.alignments=[],this.score=void 0},igv.BamAlignmentRow.prototype.findCenterAlignment=function(bpStart,bpEnd){var centerAlignment=void 0;return this.alignments.forEach(function(a){void 0===centerAlignment&&(a.start+a.lengthOnRef<bpStart||a.start>bpEnd||(centerAlignment=a))}),centerAlignment},igv.BamAlignmentRow.prototype.updateScore=function(genomicLocation,genomicInterval,sortOption){this.score=this.calculateScore(genomicLocation,1+genomicLocation,genomicInterval,sortOption)},igv.BamAlignmentRow.prototype.calculateScore=function(bpStart,bpEnd,interval,sortOption){function blockAtGenomicLocation(blocks,genomicLocation,genomicIntervalStart){var result=void 0;return blocks.forEach(function(block){for(var i=0,genomicOffset=block.start-genomicIntervalStart,blockLocation=block.start,blockSequenceLength=block.seq.length;i<blockSequenceLength;i++,genomicOffset++,blockLocation++)genomicLocation===blockLocation&&(result={block:block,blockSeqIndex:i,referenceSequenceIndex:genomicOffset,location:genomicLocation})}),result}function blockScoreWithObject(obj,interval){var reference,base,coverage,count,phred;return"*"===obj.block.seq?3:(reference=interval.sequence.charAt(obj.referenceSequenceIndex),base=obj.block.seq.charAt(obj.blockSeqIndex),"="===base&&(base=reference),"N"===base?2:reference===base?3:"X"===base||reference!==base?(coverage=interval.coverageMap.coverage[obj.location-interval.coverageMap.bpStart],count=coverage["pos"+base]+coverage["neg"+base],phred=coverage.qual?coverage.qual:0,-(count+phred/1e3)):void 0)}var baseScore,baseScoreFirst,baseScoreSecond,alignment,blockFirst,blockSecond;return alignment=this.findCenterAlignment(bpStart,bpEnd),void 0===alignment?Number.MAX_VALUE:(baseScoreFirst=baseScoreSecond=void 0,"NUCLEOTIDE"===sortOption.sort?(alignment.blocks&&alignment.blocks.length>0&&(blockFirst=blockAtGenomicLocation(alignment.blocks,bpStart,interval.start),blockFirst&&(baseScoreFirst=blockScoreWithObject(blockFirst,interval))),alignment.firstAlignment&&alignment.firstAlignment.blocks&&alignment.firstAlignment.blocks.length>0&&(blockFirst=blockAtGenomicLocation(alignment.firstAlignment.blocks,bpStart,interval.start),blockFirst&&(baseScoreFirst=blockScoreWithObject(blockFirst,interval))),alignment.secondAlignment&&alignment.secondAlignment.blocks&&alignment.secondAlignment.blocks.length>0&&(blockSecond=blockAtGenomicLocation(alignment.secondAlignment.blocks,bpStart,interval.start),blockSecond&&(baseScoreSecond=blockScoreWithObject(blockSecond,interval))),baseScore=void 0===baseScoreFirst?baseScoreSecond:baseScoreFirst,void 0===baseScore?Number.MAX_VALUE:baseScore):"STRAND"===sortOption.sort?alignment.strand?1:-1:"START"===sortOption.sort?alignment.start:Number.MAX_VALUE)},igv}(igv||{}),igv=function(igv){function optimizeChunks(chunks,lowest){var mergedChunks=[],lastChunk=null;return 0===chunks.length?chunks:(chunks.sort(function(c0,c1){var dif=c0.minv.block-c1.minv.block;return 0!=dif?dif:c0.minv.offset-c1.minv.offset}),chunks.forEach(function(chunk){chunk.maxv.isGreaterThan(lowest)&&(null===lastChunk?(mergedChunks.push(chunk),lastChunk=chunk):chunk.minv.block-lastChunk.maxv.block<65e3?chunk.maxv.isGreaterThan(lastChunk.maxv)&&(lastChunk.maxv=chunk.maxv):(mergedChunks.push(chunk),lastChunk=chunk))}),mergedChunks)}function reg2bins(beg,end){var k,list=[];for(end>=1<<29&&(end=1<<29),--end,list.push(0),k=1+(beg>>26);k<=1+(end>>26);++k)list.push(k);for(k=9+(beg>>23);k<=9+(end>>23);++k)list.push(k);for(k=73+(beg>>20);k<=73+(end>>20);++k)list.push(k);for(k=585+(beg>>17);k<=585+(end>>17);++k)list.push(k);for(k=4681+(beg>>14);k<=4681+(end>>14);++k)list.push(k);return list}const BAI_MAGIC=21578050,TABIX_MAGIC=21578324;return igv.loadBamIndex=function(indexURL,config,tabix){return new Promise(function(fullfill,reject){var genome=igv.browser?igv.browser.genome:null;igv.xhr.loadArrayBuffer(indexURL,igv.buildOptions(config)).then(function(arrayBuffer){var magic,nbin,nintv,nref,parser,binIndex,linearIndex,binNumber,cs,ce,b,i,ref,sequenceIndexMap,indices=[],blockMin=Number.MAX_VALUE,blockMax=0;if(!arrayBuffer)return void fullfill(null);if(tabix){var inflate=new Zlib.Gunzip(new Uint8Array(arrayBuffer));arrayBuffer=inflate.decompress().buffer}if(parser=new igv.BinaryParser(new DataView(arrayBuffer)),magic=parser.getInt(),!(magic===BAI_MAGIC||tabix&&magic===TABIX_MAGIC))throw new Error(indexURL+" is not a "+(tabix?"tabix":"bai")+" file");if(nref=parser.getInt(),tabix){parser.getInt(),parser.getInt(),parser.getInt(),parser.getInt(),parser.getInt(),parser.getInt(),parser.getInt();for(sequenceIndexMap={},i=0;i<nref;i++){var seq_name=parser.getString();genome&&(seq_name=genome.getChromosomeName(seq_name)),sequenceIndexMap[seq_name]=i}}for(ref=0;ref<nref;ref++){for(binIndex={},linearIndex=[],nbin=parser.getInt(),b=0;b<nbin;b++)if(binNumber=parser.getInt(),37450===binNumber){nchnk=parser.getInt(),cs=parser.getVPointer(),ce=parser.getVPointer();parser.getLong(),parser.getLong()}else{binIndex[binNumber]=[];var nchnk=parser.getInt();for(i=0;i<nchnk;i++)cs=parser.getVPointer(),ce=parser.getVPointer(),cs&&ce&&(cs.block<blockMin&&(blockMin=cs.block),ce.block>blockMax&&(blockMax=ce.block),binIndex[binNumber].push([cs,ce]))}for(nintv=parser.getInt(),i=0;i<nintv;i++)cs=parser.getVPointer(),linearIndex.push(cs);nbin>0&&(indices[ref]={binIndex:binIndex,linearIndex:linearIndex})}fullfill(new igv.BamIndex(indices,blockMin,blockMax,sequenceIndexMap,tabix))}).catch(reject)})},igv.BamIndex=function(indices,blockMin,blockMax,sequenceIndexMap,tabix){this.firstAlignmentBlock=blockMin,this.lastAlignmentBlock=blockMax,this.indices=indices,this.sequenceIndexMap=sequenceIndexMap,this.tabix=tabix},igv.BamIndex.prototype.blocksForRange=function(refId,min,max){var overlappingBins,chunks,nintv,lowest,minLin,maxLin,vp,i,bam=this,ba=bam.indices[refId];if(ba){for(overlappingBins=reg2bins(min,max),chunks=[],overlappingBins.forEach(function(bin){if(ba.binIndex[bin])for(var binChunks=ba.binIndex[bin],nchnk=binChunks.length,c=0;c<nchnk;++c){var cs=binChunks[c][0],ce=binChunks[c][1];chunks.push({minv:cs,maxv:ce,bin:bin})}}),nintv=ba.linearIndex.length,lowest=null,minLin=Math.min(min>>14,nintv-1),maxLin=Math.min(max>>14,nintv-1),i=minLin;i<=maxLin;++i)vp=ba.linearIndex[i],vp&&(lowest&&!vp.isLessThan(lowest)||(lowest=vp));return optimizeChunks(chunks,lowest)}return[]},igv}(igv||{}),igv=function(igv){function getIndex(bam){return bam.index?Promise.resolve(bam.index):igv.loadBamIndex(bam.baiPath,bam.config).then(function(index){return bam.index=index,bam.index})}function getChrIndex(bam){return bam.chrToIndex?Promise.resolve(bam.chrToIndex):bam.readHeader().then(function(header){return bam.chrToIndex=header.chrToIndex,bam.indexToChr=header.chrNames,bam.chrAliasTable=header.chrAliasTable,bam.chrToIndex})}const MAX_GZIP_BLOCK_SIZE=65536,DEFAULT_SAMPLING_WINDOW_SIZE=100,DEFAULT_SAMPLING_DEPTH=50,MAXIMUM_SAMPLING_DEPTH=2500;return igv.BamReader=function(config){this.config=config,this.filter=config.filter||new igv.BamFilter,this.bamPath=config.url,this.baiPath=config.indexURL||igv.inferIndexPath(this.bamPath,"bai"),this.headPath=config.headURL||this.bamPath,this.samplingWindowSize=void 0===config.samplingWindowSize?DEFAULT_SAMPLING_WINDOW_SIZE:config.samplingWindowSize,this.samplingDepth=void 0===config.samplingDepth?DEFAULT_SAMPLING_DEPTH:config.samplingDepth,this.samplingDepth>MAXIMUM_SAMPLING_DEPTH&&(igv.log("Warning: attempt to set sampling depth > maximum value of 2500"),this.samplingDepth=MAXIMUM_SAMPLING_DEPTH),config.viewAsPairs?this.pairsSupported=!0:this.pairsSupported=void 0===config.pairsSupported||config.pairsSupported},igv.BamReader.prototype.readAlignments=function(chr,bpStart,bpEnd){var self=this;return getChrIndex(self).then(function(chrToIndex){var chrId,queryChr,alignmentContainer;return queryChr=self.chrAliasTable.hasOwnProperty(chr)?self.chrAliasTable[chr]:chr,chrId=chrToIndex[queryChr],alignmentContainer=new igv.AlignmentContainer(chr,bpStart,bpEnd,self.samplingWindowSize,self.samplingDepth,self.pairsSupported),void 0===chrId?Promise.resolve(alignmentContainer):getIndex(self).then(function(bamIndex){var chunks=bamIndex.blocksForRange(chrId,bpStart,bpEnd),promises=[];return chunks?0===chunks.length?Promise.resolve(alignmentContainer):(chunks.forEach(function(c){promises.push(new Promise(function(fulfill,reject){var fetchMin=c.minv.block,fetchMax=c.maxv.block+65e3,range={start:fetchMin,size:fetchMax-fetchMin+1};igv.xhr.loadArrayBuffer(self.bamPath,igv.buildOptions(self.config,{range:range})).then(function(compressed){var ba=new Uint8Array(igv.unbgzf(compressed));igv.BamUtils.decodeBamRecords(ba,c.minv.offset,alignmentContainer,bpStart,bpEnd,chrId,self.indexToChr,self.filter),fulfill(alignmentContainer)}).catch(reject)}))}),Promise.all(promises)):Promise.resolve(null)}).then(function(ignored){return alignmentContainer.finish(),alignmentContainer})})},igv.BamReader.prototype.readHeader=function(){var self=this;return getIndex(self).then(function(index){var len=index.firstAlignmentBlock+MAX_GZIP_BLOCK_SIZE,options=igv.buildOptions(self.config,{range:{start:0,size:len}}),genome=igv.browser?igv.browser.genome:null;return igv.BamUtils.readHeader(self.bamPath,options,genome)}).then(function(header){return header})},igv}(igv||{}),igv=function(igv){function pairAlignments(rows){var pairCache={},result=[];return rows.forEach(function(row){row.alignments.forEach(function(alignment){var pairedAlignment;canBePaired(alignment)?(pairedAlignment=pairCache[alignment.readName],pairedAlignment?(pairedAlignment.setSecondAlignment(alignment),pairCache[alignment.readName]=void 0):(pairedAlignment=new igv.PairedAlignment(alignment),pairCache[alignment.readName]=pairedAlignment,result.push(pairedAlignment))):result.push(alignment)})}),result}function unpairAlignments(rows){var result=[];return rows.forEach(function(row){row.alignments.forEach(function(alignment){alignment instanceof igv.PairedAlignment?(alignment.firstAlignment&&result.push(alignment.firstAlignment),alignment.secondAlignment&&result.push(alignment.secondAlignment)):result.push(alignment)})}),result}function canBePaired(alignment){return alignment.isPaired()&&alignment.isMateMapped()&&alignment.chr===alignment.mate.chr&&(alignment.isFirstOfPair()||alignment.isSecondOfPair())&&!(alignment.isSecondary()||alignment.isSupplementary())}function packAlignmentRows(alignments,start,end,maxRows){if(alignments){if(alignments.sort(function(a,b){return a.start-b.start}),0===alignments.length)return[];var nextStart,alignmentRow,index,bucket,alignment,bucketStart,bucketList=[],allocatedCount=0,lastAllocatedCount=0,alignmentSpace=8,packedAlignmentRows=[];for(bucketStart=Math.max(start,alignments[0].start),nextStart=bucketStart,alignments.forEach(function(alignment){var buckListIndex=Math.max(0,alignment.start-bucketStart);void 0===bucketList[buckListIndex]&&(bucketList[buckListIndex]=[]),bucketList[buckListIndex].push(alignment)});allocatedCount<alignments.length&&packedAlignmentRows.length<maxRows;){for(alignmentRow=new igv.BamAlignmentRow;nextStart<=end;){for(bucket=void 0;!bucket&&nextStart<=end;)index=nextStart-bucketStart,void 0===bucketList[index]?++nextStart:bucket=bucketList[index];if(!bucket)break;alignment=bucket.pop(),0===bucket.length&&(bucketList[index]=void 0),alignmentRow.alignments.push(alignment),nextStart=alignment.start+alignment.lengthOnRef+alignmentSpace,++allocatedCount}if(alignmentRow.alignments.length>0&&packedAlignmentRows.push(alignmentRow),nextStart=bucketStart,allocatedCount===lastAllocatedCount)break;lastAllocatedCount=allocatedCount}return packedAlignmentRows}}return igv.BamSource=function(config){this.config=config,this.alignmentContainer=void 0,this.maxRows=config.maxRows||1e3,"ga4gh"===config.sourceType?this.bamReader=new igv.Ga4ghAlignmentReader(config):"pysam"===config.sourceType?this.bamReader=new igv.BamWebserviceReader(config):"htsget"===config.sourceType?this.bamReader=new igv.HtsgetReader(config):this.bamReader=new igv.BamReader(config),this.viewAsPairs=config.viewAsPairs},igv.BamSource.prototype.setViewAsPairs=function(bool){var self=this;if(this.viewAsPairs!==bool&&(this.viewAsPairs=bool,this.alignmentContainer)){var alignments,alignmentContainer=this.alignmentContainer;alignments=bool?pairAlignments(alignmentContainer.packedAlignmentRows):unpairAlignments(alignmentContainer.packedAlignmentRows),alignmentContainer.packedAlignmentRows=packAlignmentRows(alignments,alignmentContainer.start,alignmentContainer.end,self.maxRows)}},igv.BamSource.prototype.getAlignments=function(chr,bpStart,bpEnd){var self=this;return self.alignmentContainer&&self.alignmentContainer.contains(chr,bpStart,bpEnd)?Promise.resolve(self.alignmentContainer):new Promise(function(fulfill,reject){self.bamReader.readAlignments(chr,bpStart,bpEnd).then(function(alignmentContainer){var maxRows=self.config.maxRows||500,alignments=alignmentContainer.alignments;self.viewAsPairs||(alignments=unpairAlignments([{alignments:alignments}])),alignmentContainer.packedAlignmentRows=packAlignmentRows(alignments,alignmentContainer.start,alignmentContainer.end,maxRows),alignmentContainer.alignments=void 0,self.alignmentContainer=alignmentContainer,igv.browser.genome.sequence.getSequence(alignmentContainer.chr,alignmentContainer.start,alignmentContainer.end).then(function(sequence){sequence&&(alignmentContainer.coverageMap.refSeq=sequence,alignmentContainer.sequence=sequence,fulfill(alignmentContainer))}).catch(reject)}).catch(reject)})},igv}(igv||{}),igv=function(igv){function shadedBaseColor(qual,nucleotide,genomicLocation){var color,alpha,minQ=5,maxQ=20,foregroundColor=igv.nucleotideColorComponents[nucleotide];if(foregroundColor)return alpha=qual<minQ?.1:Math.max(.1,Math.min(1,.1+.9*(qual-minQ)/(maxQ-minQ))),alpha=Math.round(10*alpha)/10,color=alpha>=1?igv.nucleotideColors[nucleotide]:"rgba("+foregroundColor[0]+","+foregroundColor[1]+","+foregroundColor[2]+","+alpha+")"}function getAlignmentColor(alignment){var tagValue,color,alignmentTrack=this,option=alignmentTrack.colorBy;switch(color=alignmentTrack.parent.color,option){case"strand":color=alignment.strand?alignmentTrack.posStrandColor:alignmentTrack.negStrandColor;break;case"firstOfPairStrand":alignment instanceof igv.PairedAlignment?color=alignment.firstOfPairStrand()?alignmentTrack.posStrandColor:alignmentTrack.negStrandColor:alignment.isPaired()&&(alignment.isFirstOfPair()?color=alignment.strand?alignmentTrack.posStrandColor:alignmentTrack.negStrandColor:alignment.isSecondOfPair()?color=alignment.strand?alignmentTrack.negStrandColor:alignmentTrack.posStrandColor:console.log("ERROR. Paired alignments are either first or second."));break;case"tag":tagValue=alignment.tags()[alignmentTrack.colorByTag],void 0!==tagValue&&(color=alignmentTrack.bamColorTag===alignmentTrack.colorByTag?"rgb("+tagValue+")":alignmentTrack.tagColors.getColor(tagValue));break;default:color=alignmentTrack.parent.color}return color}var alignmentStartGap=5,downsampleRowHeight=5;const DEFAULT_COVERAGE_TRACK_HEIGHT=50,DEFAULT_TRACK_HEIGHT=300;return igv.BAMTrack=function(config){this.featureSource=new igv.BamSource(config),void 0===config.height&&(config.height=DEFAULT_TRACK_HEIGHT),igv.configTrack(this,config),void 0===config.coverageTrackHeight&&(config.coverageTrackHeight=DEFAULT_COVERAGE_TRACK_HEIGHT),this.coverageTrack=new CoverageTrack(config,this),this.alignmentTrack=new AlignmentTrack(config,this),this.visibilityWindow=config.visibilityWindow||3e4,this.viewAsPairs=config.viewAsPairs,this.pairsSupported=void 0===config.pairsSupported,this.color=config.color||"rgb(185, 185, 185)",this.sortOption=config.sortOption||{sort:"NUCLEOTIDE"},this.sortDirection=!0,this.filterOption=config.filterOption||{name:"mappingQuality",params:[30,void 0]}},igv.BAMTrack.prototype.getFeatures=function(chr,bpStart,bpEnd){return this.featureSource.getAlignments(chr,bpStart,bpEnd)},igv.BAMTrack.filters={noop:function(){return function(alignment){return!1}},strand:function(strand){return function(alignment){return alignment.strand===strand}},mappingQuality:function(lower,upper){return function(alignment){return!!(lower&&alignment.mq<lower)||!!(upper&&alignment.mq>upper)}}},igv.BAMTrack.prototype.altClick=function(genomicLocation,referenceFrame,event){this.alignmentTrack.sortAlignmentRows(genomicLocation,this.sortOption),this.trackView.viewports[0].redrawTile(this.featureSource.alignmentContainer),this.trackView.viewports[0].$viewport.scrollTop(0),this.sortDirection=!this.sortDirection},igv.BAMTrack.prototype.computePixelHeight=function(alignmentContainer){return this.coverageTrack.computePixelHeight(alignmentContainer)+this.alignmentTrack.computePixelHeight(alignmentContainer)},igv.BAMTrack.prototype.draw=function(options){this.coverageTrack.height>0&&this.coverageTrack.draw(options),this.alignmentTrack.draw(options)},igv.BAMTrack.prototype.paintAxis=function(ctx,pixelWidth,pixelHeight){this.coverageTrack.paintAxis(ctx,pixelWidth,this.coverageTrackHeight)},igv.BAMTrack.prototype.popupMenuItemList=function(config){var $e,clickHandler,self=this,list=[];return $e=$("<div>"),$e.text("Sort by base"),clickHandler=function(){self.alignmentTrack.sortAlignmentRows(config.genomicLocation,self.sortOption),config.viewport.redrawTile(self.featureSource.alignmentContainer),config.viewport.$viewport.scrollTop(0),self.sortDirection=!self.sortDirection,config.popover.hide()},list.push({name:void 0,object:$e,click:clickHandler,init:void 0}),!1===self.viewAsPairs&&($e=$("<div>"),$e.text("View mate in split screen"),clickHandler=function(){self.alignmentTrack.popupMenuItemList(config)},list.push({name:void 0,object:$e,click:clickHandler,init:void 0})),list},igv.BAMTrack.prototype.popupDataWithConfiguration=function(config){return config.y>=this.coverageTrack.top&&config.y<this.coverageTrack.height?this.coverageTrack.popupDataWithConfiguration(config):this.alignmentTrack.popupDataWithConfiguration(config)},igv.BAMTrack.prototype.menuItemList=function(popover){function colorByMarkup(menuItem,showCheck,index){var $e,clickHandler,parts=[];return parts.push("<div>"),parts.push(showCheck?'<i class="fa fa-check"></i>':'<i class="fa fa-check fa-check-hidden"></i>'),"tag"===menuItem.key?parts.push('<span id="color-by-tag">'):parts.push("<span>"),parts.push(menuItem.label),parts.push("</span>"),parts.push("</div>"),$e=$(parts.join("")),clickHandler=function(){igv.popover.hide(),"tag"===menuItem.key?(igv.dialog.configure(function(){return"Tag Name"},self.alignmentTrack.colorByTag?self.alignmentTrack.colorByTag:"",function(){var tag=igv.dialog.$dialogInput.val().trim();self.alignmentTrack.colorBy="tag",tag!==self.alignmentTrack.colorByTag&&(self.alignmentTrack.colorByTag=igv.dialog.$dialogInput.val().trim(),self.alignmentTrack.tagColors=new igv.PaletteColorTable("Set1"),$("#color-by-tag").text(self.alignmentTrack.colorByTag)),self.trackView.update()},void 0,void 0),igv.dialog.show($(self.trackView.trackDiv))):(self.alignmentTrack.colorBy=menuItem.key,self.trackView.update())},{name:void 0,object:$e,click:clickHandler,init:void 0}}function sortMenuItem(popover){var $e,clickHandler;return $e=$("<div>"),$e.text("Sort by base"),clickHandler=function(){var genomicLocation,viewportHalfWidth,genomicState=_.first(igv.browser.genomicStateList),referenceFrame=genomicState.referenceFrame;popover.hide(),viewportHalfWidth=Math.floor(.5*(igv.browser.viewportContainerWidth()/genomicState.locusCount)),genomicLocation=Math.floor(referenceFrame.start+referenceFrame.toBP(viewportHalfWidth)),self.altClick(genomicLocation,void 0,void 0),"show center guide"===igv.browser.centerGuide.$centerGuideToggle.text()&&igv.browser.centerGuide.$centerGuideToggle.trigger("click")},{name:void 0,object:$e,click:clickHandler,init:void 0}}var $e,html,tagLabel,selected,self=this,menuItems=[],colorByMenuItems=[];return menuItems.push(sortMenuItem(popover)),colorByMenuItems.push({key:"none",label:"track color"}),self.viewAsPairs||colorByMenuItems.push({key:"strand",label:"read strand"}),self.pairsSupported&&self.alignmentTrack.hasPairs&&colorByMenuItems.push({key:"firstOfPairStrand",label:"first-of-pair strand"}),tagLabel="tag"+(self.alignmentTrack.colorByTag?" ("+self.alignmentTrack.colorByTag+")":""),colorByMenuItems.push({key:"tag",label:tagLabel}),$e=$('<div class="igv-track-menu-category igv-track-menu-border-top">'),$e.text("Color by"),menuItems.push({name:void 0,object:$e,click:void 0,init:void 0}),colorByMenuItems.forEach(function(item){selected=self.alignmentTrack.colorBy===item.key,menuItems.push(colorByMarkup(item,selected))}),html=[],self.pairsSupported&&self.alignmentTrack.hasPairs&&(html.push('<div class="igv-track-menu-border-top">'),html.push(!0===self.viewAsPairs?'<i class="fa fa-check">':'<i class="fa fa-check fa-check-hidden">'),html.push("</i>"),html.push("View as pairs"),html.push("</div>"),menuItems.push({object:$(html.join("")),click:function(){var $fa=$(this).find("i");popover.hide(),self.viewAsPairs=!self.viewAsPairs,!0===self.viewAsPairs?$fa.removeClass("fa-check-hidden"):$fa.addClass("fa-check-hidden"),self.featureSource.setViewAsPairs(self.viewAsPairs),self.trackView.update()}})),menuItems},CoverageTrack=function(config,parent){this.parent=parent,this.featureSource=parent.featureSource,this.top=0,this.height=config.coverageTrackHeight,this.dataRange={min:0},this.paintAxis=igv.paintAxis},CoverageTrack.prototype.computePixelHeight=function(alignmentContainer){return this.height},CoverageTrack.prototype.draw=function(options){var bp,x,y,w,h,refBase,i,len,item,accumulatedHeight,sequence,self=this,alignmentContainer=options.features,ctx=options.context,bpPerPixel=options.bpPerPixel,bpStart=options.bpStart,pixelWidth=options.pixelWidth,bpEnd=bpStart+pixelWidth*bpPerPixel+1,coverageMap=alignmentContainer.coverageMap;for(this.top&&ctx.translate(0,top),coverageMap.refSeq&&(sequence=coverageMap.refSeq.toUpperCase()),this.dataRange.max=coverageMap.maximum,w=Math.max(1,Math.ceil(1/bpPerPixel)),i=0,len=coverageMap.coverage.length;i<len;i++)if(bp=coverageMap.bpStart+i,!(bp<bpStart)){if(bp>bpEnd)break;item=coverageMap.coverage[i],item&&(h=Math.round(item.total/this.dataRange.max*this.height),y=this.height-h,x=Math.floor((bp-bpStart)/bpPerPixel),igv.graphics.setProperties(ctx,{fillStyle:this.parent.color,strokeStyle:this.color}),igv.graphics.fillRect(ctx,x,y,w,h))}if(sequence)for(i=0,len=coverageMap.coverage.length;i<len;i++)if(bp=coverageMap.bpStart+i,!(bp<bpStart)){if(bp>bpEnd)break;item=coverageMap.coverage[i],item&&(h=item.total/this.dataRange.max*this.height,y=this.height-h,x=Math.floor((bp-bpStart)/bpPerPixel),refBase=sequence[i],item.isMismatch(refBase)&&(igv.graphics.setProperties(ctx,{fillStyle:igv.nucleotideColors[refBase]}),igv.graphics.fillRect(ctx,x,y,w,h),accumulatedHeight=0,["A","C","T","G"].forEach(function(nucleotide){var count,hh;count=item["pos"+nucleotide]+item["neg"+nucleotide],hh=count/self.dataRange.max*self.height,y=self.height-hh-accumulatedHeight,accumulatedHeight+=hh,igv.graphics.setProperties(ctx,{fillStyle:igv.nucleotideColors[nucleotide]}),
+igv.graphics.fillRect(ctx,x,y,w,hh)})))}},CoverageTrack.prototype.popupDataWithConfiguration=function(config){return this.popupData(config.genomicLocation,config.x,this.top,config.viewport.genomicState.referenceFrame)},CoverageTrack.prototype.popupData=function(genomicLocation,xOffset,yOffset,referenceFrame){var coverageMapIndex,coverage,tmp,coverageMap=this.featureSource.alignmentContainer.coverageMap,nameValues=[];return coverageMapIndex=genomicLocation-coverageMap.bpStart,coverage=coverageMap.coverage[coverageMapIndex],coverage&&(nameValues.push(referenceFrame.chrName+":"+igv.numberFormatter(1+genomicLocation)),nameValues.push({name:"Total Count",value:coverage.total}),tmp=coverage.posA+coverage.negA,tmp>0&&(tmp=tmp.toString()+" ("+Math.floor((coverage.posA+coverage.negA)/coverage.total*100)+"%)"),nameValues.push({name:"A",value:tmp}),tmp=coverage.posC+coverage.negC,tmp>0&&(tmp=tmp.toString()+" ("+Math.floor(tmp/coverage.total*100)+"%)"),nameValues.push({name:"C",value:tmp}),tmp=coverage.posG+coverage.negG,tmp>0&&(tmp=tmp.toString()+" ("+Math.floor(tmp/coverage.total*100)+"%)"),nameValues.push({name:"G",value:tmp}),tmp=coverage.posT+coverage.negT,tmp>0&&(tmp=tmp.toString()+" ("+Math.floor(tmp/coverage.total*100)+"%)"),nameValues.push({name:"T",value:tmp}),tmp=coverage.posN+coverage.negN,tmp>0&&(tmp=tmp.toString()+" ("+Math.floor(tmp/coverage.total*100)+"%)"),nameValues.push({name:"N",value:tmp})),nameValues},AlignmentTrack=function(config,parent){this.parent=parent,this.featureSource=parent.featureSource,this.top=0==config.coverageTrackHeight?0:config.coverageTrackHeight+5,this.alignmentRowHeight=config.alignmentRowHeight||14,this.negStrandColor=config.negStrandColor||"rgba(150, 150, 230, 0.75)",this.posStrandColor=config.posStrandColor||"rgba(230, 150, 150, 0.75)",this.insertionColor=config.insertionColor||"rgb(138, 94, 161)",this.deletionColor=config.deletionColor||"black",this.skippedColor=config.skippedColor||"rgb(150, 170, 170)",this.colorBy=config.colorBy||"none",this.colorByTag=config.colorByTag,this.bamColorTag=void 0===config.bamColorTag?"YC":config.bamColorTag,this.sortOption=config.sortOption||{sort:"NUCLEOTIDE"},this.sortDirection=!0,this.hasPairs=!1},AlignmentTrack.prototype.computePixelHeight=function(alignmentContainer){if(alignmentContainer.packedAlignmentRows){var h=0;return alignmentContainer.hasDownsampledIntervals()&&(h+=downsampleRowHeight+alignmentStartGap),h+this.alignmentRowHeight*alignmentContainer.packedAlignmentRows.length+5}return this.height},AlignmentTrack.prototype.draw=function(options){function drawPairConnector(alignment,yRect,alignmentHeight){var alignmentColor=getAlignmentColor.call(self,alignment.firstAlignment),xBlockStart=(alignment.connectingStart-bpStart)/bpPerPixel,xBlockEnd=(alignment.connectingEnd-bpStart)/bpPerPixel,yStrokedLine=yRect+alignmentHeight/2;alignment.connectingEnd<bpStart||alignment.connectingStart>bpEnd||(alignment.mq<=0&&(alignmentColor=igv.Color.addAlpha(alignmentColor,"0.15")),igv.graphics.setProperties(ctx,{fillStyle:alignmentColor,strokeStyle:alignmentColor}),igv.graphics.strokeLine(ctx,xBlockStart,yStrokedLine,xBlockEnd,yStrokedLine))}function drawSingleAlignment(alignment,yRect,alignmentHeight){function drawBlock(block){var refChar,readChar,readQual,xBase,widthBase,colorBase,x,y,i,len,seqOffset=block.start-alignmentContainer.start,xBlockStart=(block.start-bpStart)/bpPerPixel,xBlockEnd=(block.start+block.len-bpStart)/bpPerPixel,widthBlock=Math.max(1,xBlockEnd-xBlockStart),widthArrowHead=self.alignmentRowHeight/2,blockSeq=block.seq.toUpperCase(),skippedColor=self.skippedColor,deletionColor=self.deletionColor,yStrokedLine=yRect+alignmentHeight/2;if(void 0!==block.gapType&&void 0!==xBlockEnd&&void 0!==lastBlockEnd&&("D"===block.gapType?igv.graphics.strokeLine(ctx,lastBlockEnd,yStrokedLine,xBlockStart,yStrokedLine,{strokeStyle:deletionColor}):igv.graphics.strokeLine(ctx,lastBlockEnd,yStrokedLine,xBlockStart,yStrokedLine,{strokeStyle:skippedColor})),lastBlockEnd=xBlockEnd,!0===alignment.strand&&b===blocks.length-1?(x=[xBlockStart,xBlockEnd,xBlockEnd+widthArrowHead,xBlockEnd,xBlockStart,xBlockStart],y=[yRect,yRect,yRect+alignmentHeight/2,yRect+alignmentHeight,yRect+alignmentHeight,yRect],igv.graphics.fillPolygon(ctx,x,y,{fillStyle:alignmentColor}),self.highlightedAlignmentReadNamed===alignment.readName&&igv.graphics.strokePolygon(ctx,x,y,{strokeStyle:"red"}),alignment.mq<=0&&igv.graphics.strokePolygon(ctx,x,y,{strokeStyle:outlineColor})):!1===alignment.strand&&0===b?(x=[xBlockEnd,xBlockStart,xBlockStart-widthArrowHead,xBlockStart,xBlockEnd,xBlockEnd],y=[yRect,yRect,yRect+alignmentHeight/2,yRect+alignmentHeight,yRect+alignmentHeight,yRect],igv.graphics.fillPolygon(ctx,x,y,{fillStyle:alignmentColor}),self.highlightedAlignmentReadNamed===alignment.readName&&igv.graphics.strokePolygon(ctx,x,y,{strokeStyle:"red"}),alignment.mq<=0&&igv.graphics.strokePolygon(ctx,x,y,{strokeStyle:outlineColor})):(igv.graphics.fillRect(ctx,xBlockStart,yRect,widthBlock,alignmentHeight,{fillStyle:alignmentColor}),alignment.mq<=0&&(ctx.save(),ctx.strokeStyle=outlineColor,ctx.strokeRect(xBlockStart,yRect,widthBlock,alignmentHeight),ctx.restore())),sequence&&"*"!==blockSeq)for(i=0,len=blockSeq.length;i<len;i++)seqOffset+i<0||(readChar=blockSeq.charAt(i),refChar=sequence.charAt(seqOffset+i),"="===readChar&&(readChar=refChar),"X"!==readChar&&refChar===readChar||(block.qual&&block.qual.length>i?(readQual=block.qual[i],colorBase=shadedBaseColor(readQual,readChar,i+block.start)):colorBase=igv.nucleotideColors[readChar],colorBase&&(xBase=(block.start+i-bpStart)/bpPerPixel,widthBase=Math.max(1,1/bpPerPixel),igv.graphics.fillRect(ctx,xBase,yRect,widthBase,alignmentHeight,{fillStyle:colorBase}))))}var lastBlockEnd,block,b,alignmentColor=getAlignmentColor.call(self,alignment),outlineColor="alignmentColor",blocks=alignment.blocks;if(!(alignment.start+alignment.lengthOnRef<bpStart||alignment.start>bpEnd))for(alignment.mq<=0&&(alignmentColor=igv.Color.addAlpha(alignmentColor,"0.15")),igv.graphics.setProperties(ctx,{fillStyle:alignmentColor,strokeStyle:outlineColor}),b=0;b<blocks.length;b++)if(block=blocks[b],!(block.start+block.len<bpStart)){if(drawBlock(block),block.start+block.len>bpEnd)break;alignment.insertions&&alignment.insertions.forEach(function(block){var refOffset=block.start-bpStart,xBlockStart=refOffset/bpPerPixel-1,widthBlock=3;igv.graphics.fillRect(ctx,xBlockStart,yRect-1,widthBlock,alignmentHeight+2,{fillStyle:self.insertionColor})})}}var self=this,alignmentContainer=options.features,ctx=options.context,bpPerPixel=options.bpPerPixel,bpStart=options.bpStart,pixelWidth=options.pixelWidth,bpEnd=bpStart+pixelWidth*bpPerPixel+1,packedAlignmentRows=alignmentContainer.packedAlignmentRows,sequence=alignmentContainer.sequence,alignmentRowYInset=0;this.top&&ctx.translate(0,this.top),sequence&&(sequence=sequence.toUpperCase()),alignmentContainer.hasDownsampledIntervals()?(alignmentRowYInset=downsampleRowHeight+alignmentStartGap,alignmentContainer.downsampledIntervals.forEach(function(interval){var xBlockStart=(interval.start-bpStart)/bpPerPixel,xBlockEnd=(interval.end-bpStart)/bpPerPixel;xBlockEnd-xBlockStart>5&&(xBlockStart+=1,xBlockEnd-=1),igv.graphics.fillRect(ctx,xBlockStart,2,xBlockEnd-xBlockStart,downsampleRowHeight-2,{fillStyle:"black"})})):alignmentRowYInset=0,this.alignmentsYOffset=alignmentRowYInset,packedAlignmentRows&&packedAlignmentRows.forEach(function(alignmentRow,i){var i,alignment,yRect=alignmentRowYInset+self.alignmentRowHeight*i,alignmentHeight=self.alignmentRowHeight-2;for(i=0;i<alignmentRow.alignments.length;i++)if(alignment=alignmentRow.alignments[i],self.hasPairs=self.hasPairs||alignment.isPaired(),!(alignment.start+alignment.lengthOnRef<bpStart)){if(alignment.start>bpEnd)break;!0!==alignment.hidden&&(alignment instanceof igv.PairedAlignment?(drawPairConnector(alignment,yRect,alignmentHeight),drawSingleAlignment(alignment.firstAlignment,yRect,alignmentHeight),alignment.secondAlignment&&drawSingleAlignment(alignment.secondAlignment,yRect,alignmentHeight)):drawSingleAlignment(alignment,yRect,alignmentHeight))}})},AlignmentTrack.prototype.sortAlignmentRows=function(genomicLocation,sortOption){var self=this;this.featureSource.alignmentContainer.packedAlignmentRows.forEach(function(row){row.updateScore(genomicLocation,self.featureSource.alignmentContainer,sortOption)}),this.featureSource.alignmentContainer.packedAlignmentRows.sort(function(rowA,rowB){return!0===self.sortDirection?rowA.score-rowB.score:rowB.score-rowA.score})},AlignmentTrack.prototype.popupDataWithConfiguration=function(config){var clickedObject;return clickedObject=this.getClickedObject(config.viewport,config.y,config.genomicLocation),clickedObject?clickedObject.popupData(config.genomicLocation):void 0},AlignmentTrack.prototype.popupMenuItemList=function(config){function locusPairWithAlignmentAndViewport(alignment,viewport){var left,right,centroid,widthBP;return widthBP=viewport.$viewport.width()*viewport.genomicState.referenceFrame.bpPerPixel,centroid=(alignment.start+(alignment.start+alignment.lengthOnRef))/2,left=alignment.chr+":"+Math.round(centroid-widthBP/2).toString()+"-"+Math.round(centroid+widthBP/2).toString(),centroid=(alignment.mate.position+(alignment.mate.position+alignment.lengthOnRef))/2,right=alignment.chr+":"+Math.round(centroid-widthBP/2).toString()+"-"+Math.round(centroid+widthBP/2).toString(),[left,right]}var alignment,loci,mateLoci,index,head,tail;this.highlightedAlignmentReadNamed=void 0,config.popover.hide(),alignment=this.getClickedObject(config.viewport,config.y,config.genomicLocation),alignment&&(this.highlightedAlignmentReadNamed=alignment.readName,loci=_.map(igv.browser.genomicStateList,function(gs){return gs.locusSearchString}),index=config.viewport.genomicState.locusIndex,head=_.first(loci,1+index),tail=1===_.size(loci)?void 0:_.last(loci,_.size(loci)-(1+index)),mateLoci=locusPairWithAlignmentAndViewport(alignment,config.viewport),head.splice(-1,1),Array.prototype.push.apply(head,mateLoci),tail&&Array.prototype.push.apply(head,tail),igv.browser.parseSearchInput(head.join(" ")))},AlignmentTrack.prototype.getClickedObject=function(viewport,y,genomicLocation){var packedAlignmentRows,downsampledIntervals,packedAlignmentsIndex,alignmentRow,clicked,i;if(packedAlignmentRows=viewport.drawConfiguration.features.packedAlignmentRows,downsampledIntervals=viewport.drawConfiguration.features.downsampledIntervals,packedAlignmentsIndex=Math.floor((y-this.top-this.alignmentsYOffset)/this.alignmentRowHeight),packedAlignmentsIndex<0){for(i=0;i<downsampledIntervals.length;i++)if(downsampledIntervals[i].start<=genomicLocation&&downsampledIntervals[i].end>=genomicLocation)return downsampledIntervals[i]}else if(packedAlignmentsIndex<packedAlignmentRows.length&&(alignmentRow=packedAlignmentRows[packedAlignmentsIndex],clicked=_.filter(alignmentRow.alignments,function(alignment){return genomicLocation>=alignment.start&&genomicLocation<=alignment.start+alignment.lengthOnRef}),clicked.length>0))return clicked[0]},igv}(igv||{}),igv=function(igv){function makeBlocks(record,cigarArray){for(var insertions,blockSeq,blockQuals,gapType,blocks=[],seqOffset=0,pos=record.start,len=cigarArray.length,i=0;i<len;i++){var c=cigarArray[i];switch(c.ltr){case"H":break;case"P":break;case"S":seqOffset+=c.len,gapType="S";break;case"N":pos+=c.len,gapType="N";break;case"D":pos+=c.len,gapType="D";break;case"I":blockSeq="*"===record.seq?"*":record.seq.substr(seqOffset,c.len),blockQuals=record.qual?record.qual.slice(seqOffset,c.len):void 0,void 0===insertions&&(insertions=[]),insertions.push({start:pos,len:c.len,seq:blockSeq,qual:blockQuals}),seqOffset+=c.len;break;case"M":case"EQ":case"=":case"X":blockSeq="*"===record.seq?"*":record.seq.substr(seqOffset,c.len),blockQuals=record.qual?record.qual.slice(seqOffset,c.len):void 0,blocks.push({start:pos,len:c.len,seq:blockSeq,qual:blockQuals,gapType:gapType}),seqOffset+=c.len,pos+=c.len;break;default:console.log("Error processing cigar element: "+c.len+c.ltr)}}return{blocks:blocks,insertions:insertions}}function readInt(ba,offset){return ba[offset+3]<<24|ba[offset+2]<<16|ba[offset+1]<<8|ba[offset]}function buildOperators(cigarString){var operators,buffer,i,len,prevOp,next,op,nBases;for(operators=[],buffer=[],prevOp=null,len=cigarString.length,i=0;i<len;i++)next=cigarString.charAt(i),isDigit(next)?buffer.push(next):(op=next,nBases=Number.parseInt(buffer.join("")),buffer=[],null!=prevOp&&prevOp.ltr==op?prevOp.len+=nBases:(prevOp={len:nBases,ltr:op},operators.push(prevOp)));return operators}function isDigit(a){var charCode=a.charCodeAt(0);return charCode>=48&&charCode<=57}function decodeSamTags(tags){var tagDict={};return tags.forEach(function(tag){var tokens=tag.split(":");tagDict[tokens[0]]=tokens[2]}),tagDict}var SEQ_DECODER=["=","A","C","x","G","x","x","x","T","x","x","x","x","x","x","N"],CIGAR_DECODER=["M","I","D","N","S","H","P","=","X","?","?","?","?","?","?","?"],READ_STRAND_FLAG=16,MATE_STRAND_FLAG=32,BAM1_MAGIC_BYTES=new Uint8Array([66,65,77,1]),BAM1_MAGIC_NUMBER=readInt(BAM1_MAGIC_BYTES,0);return igv.BamUtils={readHeader:function(url,options,genome){return new Promise(function(fulfill,reject){igv.xhr.loadArrayBuffer(url,options).then(function(compressedBuffer){var header,unc,uncba;unc=igv.unbgzf(compressedBuffer),uncba=new Uint8Array(unc),header=igv.BamUtils.decodeBamHeader(uncba,genome),fulfill(header)}).catch(function(error){reject(error)})})},decodeBamHeader:function(ba,genome){var magic,samHeaderLen,samHeader,chrToIndex,chrNames,chrAliasTable,alias;if(magic=readInt(ba,0),magic!==BAM1_MAGIC_NUMBER)throw new Error("BAM header contains an invalid BAM magic");samHeaderLen=readInt(ba,4),samHeader="";for(var i=0;i<samHeaderLen;++i)samHeader+=String.fromCharCode(ba[i+8]);var nRef=readInt(ba,samHeaderLen+8),p=samHeaderLen+12;for(chrToIndex={},chrNames=[],chrAliasTable={},i=0;i<nRef;++i){for(var lName=readInt(ba,p),name="",j=0;j<lName-1;++j)name+=String.fromCharCode(ba[p+4+j]);readInt(ba,p+lName+4);chrToIndex[name]=i,chrNames[i]=name,genome&&(alias=genome.getChromosomeName(name),chrAliasTable[alias]=name),p=p+8+lName}return{magicNumber:magic,size:p,chrNames:chrNames,chrToIndex:chrToIndex,chrAliasTable:chrAliasTable}},bam_tag2cigar:function(ba,block_end,seq_offset,lseq,al,cigarArray){function type2size(x){return"C"==x||"c"==x||"A"==x?1:"S"==x||"s"==x?2:"I"==x||"i"==x||"f"==x?4:0}if(1!=cigarArray.length||al.start<0)return!1;for(var p=seq_offset+(lseq+1>>1)+lseq;p+4<block_end;){var tag=String.fromCharCode(ba[p])+String.fromCharCode(ba[p+1]);if("CG"==tag)break;var type=String.fromCharCode(ba[p+2]);if("B"==type){type=String.fromCharCode(ba[p+3]);var size=type2size(type),len=readInt(ba,p+4);p+=8+size*len}else if("Z"==type||"H"==type)for(p+=3;0!=ba[p++];);else p+=3+type2size(type)}if(p>=block_end)return!1;if("B"!=String.fromCharCode(ba[p+2])||"I"!=String.fromCharCode(ba[p+3]))return!1;var cigar_len=readInt(ba,p+4),cigar_offset=p+8;if(cigar_offset+4*cigar_len>block_end)return!1;var cigar="",lengthOnRef=0;cigarArray.length=0,p=cigar_offset;for(var k=0;k<cigar_len;++k,p+=4){var cigop=readInt(ba,p),opLen=cigop>>4,opLtr=CIGAR_DECODER[15&cigop];"M"!=opLtr&&"EQ"!=opLtr&&"X"!=opLtr&&"D"!=opLtr&&"N"!=opLtr&&"="!=opLtr||(lengthOnRef+=opLen),cigar=cigar+opLen+opLtr,cigarArray.push({len:opLen,ltr:opLtr})}return al.cigar=cigar,al.lengthOnRef=lengthOnRef,!0},decodeBamRecords:function(ba,offset,alignmentContainer,min,max,chrIdx,chrNames,filter){for(var blockSize,blockEnd,alignment,blocks,refID,pos,bin_mq_nl,bin,mq,nl,flag_nc,flag,nc,lseq,tlen,mateChrIdx,matePos,readName,j,p,lengthOnRef,cigar,c,cigarArray,seq,seqBytes,qualArray;offset<ba.length;){if(blockSize=readInt(ba,offset),blockEnd=offset+blockSize+4,blockEnd>ba.length)return;if(alignment=new igv.BamAlignment,refID=readInt(ba,offset+4),pos=readInt(ba,offset+8),!(refID<0)){if(refID>chrIdx||pos>max)return;if(!(refID<chrIdx)){for(bin_mq_nl=readInt(ba,offset+12),bin=(4294901760&bin_mq_nl)>>16,mq=(65280&bin_mq_nl)>>8,nl=255&bin_mq_nl,flag_nc=readInt(ba,offset+16),flag=(4294901760&flag_nc)>>16,nc=65535&flag_nc,lseq=readInt(ba,offset+20),mateChrIdx=readInt(ba,offset+24),matePos=readInt(ba,offset+28),tlen=readInt(ba,offset+32),readName=[],j=0;j<nl-1;++j)readName.push(String.fromCharCode(ba[offset+36+j]));for(readName=readName.join(""),lengthOnRef=0,cigar="",p=offset+36+nl,cigarArray=[],c=0;c<nc;++c){var cigop=readInt(ba,p),opLen=cigop>>4,opLtr=CIGAR_DECODER[15&cigop];"M"!=opLtr&&"EQ"!=opLtr&&"X"!=opLtr&&"D"!=opLtr&&"N"!=opLtr&&"="!=opLtr||(lengthOnRef+=opLen),cigar=cigar+opLen+opLtr,p+=4,cigarArray.push({len:opLen,ltr:opLtr})}if(alignment.chr=chrNames[refID],alignment.start=pos,alignment.flags=flag,alignment.strand=!(flag&READ_STRAND_FLAG),alignment.readName=readName,alignment.cigar=cigar,alignment.lengthOnRef=lengthOnRef,alignment.fragmentLength=tlen,alignment.mq=mq,igv.BamUtils.bam_tag2cigar(ba,blockEnd,p,lseq,alignment,cigarArray),alignment.start+alignment.lengthOnRef<min)offset=blockEnd;else{for(seq=[],seqBytes=lseq+1>>1,j=0;j<seqBytes;++j){var sb=ba[p+j];seq.push(SEQ_DECODER[(240&sb)>>4]),seq.push(SEQ_DECODER[15&sb])}if(seq=seq.slice(0,lseq).join(""),p+=seqBytes,1===lseq&&"*"===String.fromCharCode(ba[p+j]+33));else for(qualArray=[],j=0;j<lseq;++j)qualArray.push(ba[p+j]);p+=lseq,mateChrIdx>=0&&(alignment.mate={chr:chrNames[mateChrIdx],position:matePos,strand:!(flag&MATE_STRAND_FLAG)}),alignment.seq=seq,alignment.qual=qualArray,alignment.tagBA=new Uint8Array(ba.buffer.slice(p,blockEnd)),(!min||alignment.start<=max&&alignment.start+alignment.lengthOnRef>=min&&(void 0===filter||filter.pass(alignment)))&&(void 0!==chrIdx&&refID!=chrIdx||(blocks=makeBlocks(alignment,cigarArray),alignment.blocks=blocks.blocks,alignment.insertions=blocks.insertions,alignmentContainer.push(alignment))),offset=blockEnd}}}}},decodeSamRecords:function(sam,alignmentContainer,chr,min,max,filter){var lines,i,j,len,tokens,blocks,qualString,rnext,lengthOnRef,alignment,cigarArray,started;for(lines=sam.splitLines(),len=lines.length,started=!1,i=0;i<len;i++)if(tokens=lines[i].split("\t"),alignment=new igv.BamAlignment,alignment.chr=tokens[2],alignment.start=Number.parseInt(tokens[3])-1,alignment.flags=Number.parseInt(tokens[1]),alignment.readName=tokens[0],alignment.strand=!(alignment.flags&READ_STRAND_FLAG),alignment.mq=Number.parseInt(tokens[4]),alignment.cigar=tokens[5],alignment.fragmentLength=Number.parseInt(tokens[8]),alignment.seq=tokens[9],"*"!==alignment.chr&&alignment.isMapped())if(alignment.chr===chr){if(alignment.start>max)break;if(lengthOnRef=0,cigarArray=buildOperators(alignment.cigar),cigarArray.forEach(function(op){var opLen=op.len,opLtr=op.ltr;"M"!=opLtr&&"EQ"!=opLtr&&"X"!=opLtr&&"D"!=opLtr&&"N"!=opLtr&&"="!=opLtr||(lengthOnRef+=opLen)}),alignment.lengthOnRef=lengthOnRef,!(alignment.start+lengthOnRef<min)){for(qualString=tokens[10],alignment.qual=[],j=0;j<qualString.length;j++)alignment.qual[j]=qualString.charCodeAt(j)-33;alignment.tagDict=tokens.length<11?{}:decodeSamTags(tokens.slice(11)),alignment.isMateMapped()&&(rnext=tokens[6],alignment.mate={chr:"="===rnext?alignment.chr:rnext,position:Number.parseInt(tokens[7]),strand:!(alignment.flags&MATE_STRAND_FLAG)}),(void 0===filter||filter.pass(alignment))&&(blocks=makeBlocks(alignment,cigarArray),alignment.blocks=blocks.blocks,alignment.insertions=blocks.insertions,alignmentContainer.push(alignment))}}else if(started)break}},igv}(igv||{}),igv=function(igv){function getHeader(){var self=this;if(this.header)return Promise.resolve(this.header);var url=this.config.url+"?file="+this.config.alignmentFile+"&options=-b,-H",options=igv.buildOptions(this.config),genome=igv.browser?igv.browser.genome:null;return new Promise(function(fulfill,reject){igv.BamUtils.readHeader(url,options,genome).then(function(header){self.header=header,fulfill(header)}).catch(reject)})}const DEFAULT_SAMPLING_WINDOW_SIZE=100,DEFAULT_SAMPLING_DEPTH=50,MAXIMUM_SAMPLING_DEPTH=2500;return igv.BamWebserviceReader=function(config){this.config=config,this.filter=config.filter||new igv.BamFilter,this.samplingWindowSize=void 0===config.samplingWindowSize?DEFAULT_SAMPLING_WINDOW_SIZE:config.samplingWindowSize,this.samplingDepth=void 0===config.samplingDepth?DEFAULT_SAMPLING_DEPTH:config.samplingDepth,this.samplingDepth>MAXIMUM_SAMPLING_DEPTH&&(igv.log("Warning: attempt to set sampling depth > maximum value of 2500"),this.samplingDepth=MAXIMUM_SAMPLING_DEPTH),config.viewAsPairs?this.pairsSupported=!0:this.pairsSupported=void 0===config.pairsSupported||config.pairsSupported},igv.BamWebserviceReader.prototype.readAlignments=function(chr,bpStart,bpEnd){var self=this;return new Promise(function(fulfill,reject){getHeader.call(self).then(function(header){var queryChr,url;queryChr=header.chrAliasTable.hasOwnProperty(chr)?header.chrAliasTable[chr]:chr,url=self.config.url+"?reference="+self.config.referenceFile+"&file="+self.config.alignmentFile+"&region="+queryChr+":"+bpStart+"-"+bpEnd,igv.xhr.loadString(url,igv.buildOptions(self.config)).then(function(sam){var alignmentContainer,chrId;chrId=header.chrToIndex[queryChr],alignmentContainer=new igv.AlignmentContainer(chr,bpStart,bpEnd,self.samplingWindowSize,self.samplingDepth,self.pairsSupported),igv.BamUtils.decodeSamRecords(sam,alignmentContainer,queryChr,bpStart,bpEnd,self.filter),fulfill(alignmentContainer)}).catch(function(obj){reject(obj)})}).catch(reject)})},igv}(igv||{}),igv=function(igv){var BLOCK_HEADER_LENGTH=18;return igv.unbgzf=function(data,lim){var oBlockList=[],ptr=[0],totalSize=0;for(lim=lim||data.byteLength-18;ptr[0]<lim;){var ba=new Uint8Array(data,ptr[0],18),xlen=ba[11]<<8|ba[10],bsize=(ba[12],ba[13],ba[15]<<8|ba[14],ba[17]<<8|ba[16]+1),start=12+xlen+ptr[0],length=data.byteLength-start;if(length<bsize+8)break;var unc=jszlib_inflate_buffer(data,start,length,ptr);ptr[0]+=8,totalSize+=unc.byteLength,oBlockList.push(unc)}if(1==oBlockList.length)return oBlockList[0];for(var out=new Uint8Array(totalSize),cursor=0,i=0;i<oBlockList.length;++i){var b=new Uint8Array(oBlockList[i]);arrayCopy(b,0,out,cursor,b.length),cursor+=b.length}return out.buffer},igv.BGZFile=function(config){this.filePosition=0,this.config=config},igv.BGZFile.prototype.nextBlock=function(){var self=this;return new Promise(function(fulfill,reject){igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:self.filePosition,size:BLOCK_HEADER_LENGTH}})).then(function(arrayBuffer){var ba=new Uint8Array(arrayBuffer),bsize=(ba[11]<<8|ba[10],ba[12],ba[13],ba[15]<<8|ba[14],ba[17]<<8|ba[16]+1);self.filePosition+=BLOCK_HEADER_LENGTH,igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:self.filePosition,size:bsize}})).then(function(arrayBuffer){var unc=jszlib_inflate_buffer(arrayBuffer);self.filePosition+=bsize+8,fulfill(unc)}).catch(reject)}).catch(reject)})},igv}(igv||{}),igv=function(igv){function Coverage(){this.posA=0,this.negA=0,this.posT=0,this.negT=0,this.posC=0,this.negC=0,this.posG=0,this.negG=0,this.posN=0,this.negN=0,this.pos=0,this.neg=0,this.qualA=0,this.qualT=0,this.qualC=0,this.qualG=0,this.qualN=0,this.qual=0,this.total=0}return igv.CoverageMap=function(chr,start,end,alignments,refSeq){var myself=this;this.refSeq=refSeq,this.chr=chr,this.bpStart=start,this.length=end-start,this.coverage=new Array(this.length),this.maximum=0,alignments.forEach(function(alignment){alignment.blocks.forEach(function(block){var key,base,i,j,q;for(i=block.start-myself.bpStart,j=0;j<block.len;i++,j++)myself.coverage[i]||(myself.coverage[i]=new Coverage),base=block.seq.charAt(j),key=alignment.strand?"pos"+base:"neg"+base,q=block.qual[j],myself.coverage[i][key]+=1,myself.coverage[i]["qual"+base]+=q,myself.coverage[i].total+=1,myself.coverage[i].qual+=q,myself.maximum=Math.max(myself.coverage[i].total,myself.maximum)})})},igv.CoverageMap.threshold=.2,igv.CoverageMap.qualityWeight=!0,Coverage.prototype.isMismatch=function(refBase){var mismatchQualitySum,myself=this,threshold=igv.CoverageMap.threshold*(igv.CoverageMap.qualityWeight&&this.qual?this.qual:this.total);return mismatchQualitySum=0,["A","T","C","G"].forEach(function(base){base!==refBase&&(mismatchQualitySum+=igv.CoverageMap.qualityWeight&&myself.qual?myself["qual"+base]:myself["pos"+base]+myself["neg"+base])}),mismatchQualitySum>=threshold},igv}(igv||{}),igv=function(igv){function loadUrls(urls){var promiseArray=[];return urls.forEach(function(urlData){if(urlData.url.startsWith("data:"))promiseArray.push(Promise.resolve(dataUriToBlob(urlData.url)));else{var options={};urlData.headers&&(options.headers=urlData.headers,options.headers.hasOwnProperty("referer")&&delete options.headers.referer),promiseArray.push(new Promise(function(fulfill,reject){igv.xhr.loadArrayBuffer(urlData.url,options).then(function(buffer){fulfill(new Uint8Array(buffer))})}))}}),Promise.all(promiseArray)}function concatArrays(arrays){var len,newArray,offset;return len=0,arrays.forEach(function(a){len+=a.length}),offset=0,newArray=new Uint8Array(len),arrays.forEach(function(a){newArray.set(a,offset),offset+=a.length}),newArray}function dataUriToBlob(dataUri){var bytes,split=dataUri.split(","),info=split[0].split(":")[1],dataString=split[1];dataString=info.indexOf("base64")>=0?atob(dataString):decodeURI(dataString),bytes=new Uint8Array(dataString.length);for(var i=0;i<dataString.length;i++)bytes[i]=dataString.charCodeAt(i);return bytes}return igv.HtsgetReader=function(config){this.config=config},igv.HtsgetReader.prototype.readAlignments=function(chr,start,end){var self=this;return new Promise(function(fulfill,reject){function getHeader(){return self.header?Promise.resolve(self.header):new Promise(function(fulfill,reject){var url=self.config.endpoint+"/reads/"+self.config.id+"?referenceName=noSuchReference";igv.xhr.loadJson(url,self.config).then(function(data){var genome=igv.browser?igv.browser.genome:void 0;data&&data.htsget&&data.htsget.urls?loadUrls(data.htsget.urls).then(function(dataArr){var compressedData,unc,ba;compressedData=concatArrays(dataArr),unc=igv.unbgzf(compressedData.buffer),ba=new Uint8Array(unc),self.header=igv.BamUtils.decodeBamHeader(ba,genome),fulfill(self.header)}):reject("Error querying htsget: "+headerUrl)})})}getHeader().then(function(header){var queryChr,url;return queryChr=header.chrAliasTable.hasOwnProperty(chr)?header.chrAliasTable[chr]:chr,url=self.config.endpoint+"/reads/"+self.config.id+"?referenceName="+queryChr+"&start="+start+"&end="+end,igv.xhr.loadJson(url,self.config)}).then(function(data){return loadUrls(data.htsget.urls)}).then(function(dataArr){var compressedData,unc,ba,alignmentContainer,chrIdx;compressedData=concatArrays(dataArr),unc=igv.unbgzf(compressedData.buffer),ba=new Uint8Array(unc),chrIdx=self.header.chrToIndex[chr],alignmentContainer=new igv.AlignmentContainer(chr,start,end),igv.BamUtils.decodeBamRecords(ba,self.header.size,alignmentContainer,start,end,chrIdx,self.header.chrNames),alignmentContainer.finish(),fulfill(alignmentContainer)}).catch(function(error){reject(error)})})},igv}(igv||{}),igv=function(igv){return igv.PairedAlignment=function(firstAlignment){this.firstAlignment=firstAlignment,this.chr=firstAlignment.chr,this.readName=firstAlignment.readName,firstAlignment.start<firstAlignment.mate.position?(this.start=firstAlignment.start,this.end=Math.max(firstAlignment.mate.position,firstAlignment.start+firstAlignment.lengthOnRef),this.connectingStart=firstAlignment.start+firstAlignment.lengthOnRef,this.connectingEnd=firstAlignment.mate.position):(this.start=firstAlignment.mate.position,this.end=firstAlignment.start+firstAlignment.lengthOnRef,this.connectingStart=firstAlignment.mate.position,this.connectingEnd=firstAlignment.start),this.lengthOnRef=this.end-this.start},igv.PairedAlignment.prototype.setSecondAlignment=function(alignment){this.secondAlignment=alignment,alignment.start>this.firstAlignment.start?(this.end=alignment.start+alignment.lengthOnRef,this.connectingEnd=alignment.start):(this.start=alignment.start,this.connectingStart=alignment.start+alignment.lengthOnRef),this.lengthOnRef=this.end-this.start},igv.PairedAlignment.prototype.popupData=function(genomicLocation){var nameValues=[];return nameValues=nameValues.concat(this.firstAlignment.popupData(genomicLocation)),this.secondAlignment&&(nameValues.push("-------------------------------"),nameValues=nameValues.concat(this.secondAlignment.popupData(genomicLocation))),nameValues},igv.PairedAlignment.prototype.isPaired=function(){return!0},igv.PairedAlignment.prototype.firstOfPairStrand=function(){return this.firstAlignment.isFirstOfPair()?this.firstAlignment.strand:this.secondAlignment&&this.secondAlignment.isFirstOfPair()?this.secondAlignment.strand:this.firstAlignment.mate.strand},igv}(igv||{}),igv=function(igv){return igv.isb={querySegByStudy:function(study,limit){var q='SELECT * FROM [isb-cgc:tcga_201510_alpha.Copy_Number_segments] WHERE ParticipantBarcode IN (SELECT ParticipantBarcode FROM [isb-cgc:tcga_201510_alpha.Clinical_data] WHERE Study = "'+study+'")';return limit&&(q+=" limit "+limit),q},decodeSeg:function(row){var seg={};return seg.ParticipantBarcode=row.f[0].v,seg.Study=row.f[4].v,seg.Chromosome=row.f[6].v,seg.Start=row.f[7].v,seg.End=row.f[8].v,seg.Num_Probes=row.f[9].v,seg.Segment_mean=row.f[10].v,seg}},igv}(igv||{}),igv=function(igv){return igv.BufferedReader=function(config,contentLength,bufferSize){this.path=config.url,this.contentLength=contentLength,this.bufferSize=bufferSize?bufferSize:512e3,this.range={start:-1,size:-1},this.config=config},igv.BufferedReader.prototype.dataViewForRange=function(requestedRange,asUint8){function subbuffer(bufferedReader,requestedRange,asUint8){var len=bufferedReader.data.byteLength,bufferStart=requestedRange.start-bufferedReader.range.start,result=asUint8?new Uint8Array(bufferedReader.data,bufferStart,len-bufferStart):new DataView(bufferedReader.data,bufferStart,len-bufferStart);return result}var bufferSize,loadRange,self=this,hasData=self.data&&self.range.start<=requestedRange.start&&self.range.start+self.range.size>=requestedRange.start+requestedRange.size;return hasData?Promise.resolve(subbuffer(self,requestedRange,asUint8)):(bufferSize=Math.max(self.bufferSize,requestedRange.size),loadRange=self.contentLength>0&&requestedRange.start+bufferSize>self.contentLength?{start:requestedRange.start}:{start:requestedRange.start,size:bufferSize},igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:loadRange})).then(function(arrayBuffer){return self.data=arrayBuffer,self.range=loadRange,subbuffer(self,requestedRange,asUint8)}))},igv}(igv||{}),igv=function(igv){function ZoomLevelHeader(index,byteBuffer){this.index=index,this.reductionLevel=byteBuffer.getInt(),this.reserved=byteBuffer.getInt(),this.dataOffset=byteBuffer.getLong(),this.indexOffset=byteBuffer.getLong()}function RPTree(fileOffset,contentLength,config,littleEndian){this.config=config,this.filesize=contentLength,this.fileOffset=fileOffset,this.path=config.url,this.littleEndian=littleEndian}function RPTreeNode(items){this.items=items;var i,item,minChromId=Number.MAX_VALUE,maxChromId=0,minStartBase=Number.MAX_VALUE,maxEndBase=0;for(i=0;i<items.length;i++)item=items[i],minChromId=Math.min(minChromId,item.startChrom),maxChromId=Math.max(maxChromId,item.endChrom),minStartBase=Math.min(minStartBase,item.startBase),maxEndBase=Math.max(maxEndBase,item.endBase);this.startChrom=minChromId,this.endChrom=maxChromId,this.startBase=minStartBase,this.endBase=maxEndBase}function BPTree(binaryParser,startOffset){function readTreeNode(byteBuffer,offset){offset>=0&&(byteBuffer.position=offset);var i,key,chromId,chromSize,childOffset,bufferOffset,currOffset,type=byteBuffer.getByte(),count=(byteBuffer.getByte(),byteBuffer.getUShort());if(1==type)for(i=0;i<count;i++)key=byteBuffer.getFixedLengthTrimmedString(keySize),chromId=byteBuffer.getInt(),chromSize=byteBuffer.getInt(),genome&&(key=genome.getChromosomeName(key)),chromToId[key]=chromId,idToChrom[chromId]=key;else for(i=0;i<count;i++)key=byteBuffer.getFixedLengthTrimmedString(keySize),childOffset=byteBuffer.getLong(),
+bufferOffset=childOffset-startOffset,currOffset=byteBuffer.position,readTreeNode(byteBuffer,bufferOffset),byteBuffer.position=currOffset}var genome=igv.browser?igv.browser.genome:null,keySize=(binaryParser.getInt(),binaryParser.getInt(),binaryParser.getInt()),chromToId=(binaryParser.getInt(),binaryParser.getLong(),binaryParser.getLong(),{}),idToChrom=[];this.chromToID=chromToId,this.idToChrom=idToChrom,readTreeNode(binaryParser,-1)}function overlaps(item,chrIdx1,startBase,chrIdx2,endBase){return item?(chrIdx2>item.startChrom||chrIdx2==item.startChrom&&endBase>=item.startBase)&&(chrIdx1<item.endChrom||chrIdx1==item.endChrom&&startBase<=item.endBase):(console.log("null item"),!1)}function BWTotalSummary(byteBuffer){byteBuffer?(this.basesCovered=byteBuffer.getLong(),this.minVal=byteBuffer.getDouble(),this.maxVal=byteBuffer.getDouble(),this.sumData=byteBuffer.getDouble(),this.sumSquares=byteBuffer.getDouble(),computeStats.call(this)):(this.basesCovered=0,this.minVal=0,this.maxVal=0,this.sumData=0,this.sumSquares=0,this.mean=0,this.stddev=0)}function computeStats(){var n=this.basesCovered;if(n>0){this.mean=this.sumData/n,this.stddev=Math.sqrt(this.sumSquares/(n-1));this.minVal<0?this.mean-2*this.stddev:0,this.maxVal>0?this.mean+2*this.stddev:0;this.defaultRange={min:0,max:this.mean+3*this.stddev}}}function zoomLevelForScale(bpPerPixel,zoomLevelHeaders){var i,zl,level=null;for(i=0;i<zoomLevelHeaders.length;i++)if(zl=zoomLevelHeaders[i],zl.reductionLevel<bpPerPixel){level=zl;break}return level}function decodeWigData(data,chrIdx1,bpStart,chrIdx2,bpEnd,featureArray,chrDict){var value,chr,binaryParser=new igv.BinaryParser(data),chromId=binaryParser.getInt(),chromStart=binaryParser.getInt(),chromEnd=binaryParser.getInt(),itemStep=binaryParser.getInt(),itemSpan=binaryParser.getInt(),type=binaryParser.getByte(),itemCount=(binaryParser.getByte(),binaryParser.getUShort());if(chromId>=chrIdx1&&chromId<=chrIdx2)for(;itemCount-- >0;){switch(type){case 1:chromStart=binaryParser.getInt(),chromEnd=binaryParser.getInt(),value=binaryParser.getFloat();break;case 2:chromStart=binaryParser.getInt(),value=binaryParser.getFloat(),chromEnd=chromStart+itemSpan;break;case 3:value=binaryParser.getFloat(),chromEnd=chromStart+itemSpan,chromStart+=itemStep}if(!(chromId<chrIdx1||chromId===chrIdx1&&chromEnd<bpStart)){if(chromId>chrIdx2||chromId===chrIdx2&&chromStart>=bpEnd)break;Number.isFinite(value)&&(chr=chrDict[chromId],featureArray.push({chr:chr,start:chromStart,end:chromEnd,value:value}))}}}function decodeBedData(data,chrIdx1,bpStart,chrIdx2,bpEnd,featureArray,chrDict){for(var chromId,chromStart,chromEnd,rest,tokens,feature,exonCount,exonSizes,exonStarts,exons,eStart,eEnd,chr,binaryParser=new igv.BinaryParser(data),minSize=13;binaryParser.remLength()>=minSize;)if(chromId=binaryParser.getInt(),chr=chrDict[chromId],chromStart=binaryParser.getInt(),chromEnd=binaryParser.getInt(),rest=binaryParser.getString(),!(chromId<chrIdx1||chromId===chrIdx1&&chromEnd<bpStart)){if(chromId>chrIdx2||chromId===chrIdx2&&chromStart>=bpEnd)break;if(feature={chr:chr,start:chromStart,end:chromEnd},featureArray.push(feature),tokens=rest.split("\t"),tokens.length>0&&(feature.name=tokens[0]),tokens.length>1&&(feature.score=parseFloat(tokens[1])),tokens.length>2&&(feature.strand=tokens[2]),tokens.length>3&&(feature.cdStart=parseInt(tokens[3])),tokens.length>4&&(feature.cdEnd=parseInt(tokens[4])),tokens.length>5&&"."!==tokens[5]&&"0"!==tokens[5]&&(feature.color=igv.Color.createColorString(tokens[5])),tokens.length>8){exonCount=parseInt(tokens[6]),exonSizes=tokens[7].split(","),exonStarts=tokens[8].split(","),exons=[];for(var i=0;i<exonCount;i++)eStart=start+parseInt(exonStarts[i]),eEnd=eStart+parseInt(exonSizes[i]),exons.push({start:eStart,end:eEnd});feature.exons=exons}}}function decodeZoomData(data,chrIdx1,bpStart,chrIdx2,bpEnd,featureArray,chrDict,windowFunction){for(var chromId,chromStart,chromEnd,validCount,minVal,maxVal,sumData,sumSquares,value,chr,binaryParser=new igv.BinaryParser(data),minSize=32;binaryParser.remLength()>=minSize;)if(chromId=binaryParser.getInt(),chr=chrDict[chromId],chromStart=binaryParser.getInt(),chromEnd=binaryParser.getInt(),!(chromId<chrIdx1||chromId===chrIdx1&&chromEnd<bpStart)){if(chromId>chrIdx2||chromId===chrIdx2&&chromStart>=bpEnd)break;switch(validCount=binaryParser.getInt(),minVal=binaryParser.getFloat(),maxVal=binaryParser.getFloat(),sumData=binaryParser.getFloat(),sumSquares=binaryParser.getFloat(),windowFunction){case"min":value=minVal;break;case"max":value=maxVal;break;default:value=0==validCount?0:sumData/validCount}Number.isFinite(value)&&featureArray.push({chr:chr,start:chromStart,end:chromEnd,value:value})}}var BIGWIG_MAGIC_LTH=2291137574,BIGWIG_MAGIC_HTL=654085990,BIGBED_MAGIC_LTH=2273964779,BIGBED_MAGIC_HTL=3958540679,BBFILE_HEADER_SIZE=64,RPTREE_HEADER_SIZE=48,RPTREE_NODE_LEAF_ITEM_SIZE=32,RPTREE_NODE_CHILD_ITEM_SIZE=24,BUFFER_SIZE=512e3;return igv.BWReader=function(config){this.path=config.url,this.headPath=config.headURL||this.path,this.rpTreeCache={},this.config=config},igv.BWReader.prototype.readWGFeatures=function(genome,bpPerPixel,windowFunction){var self=this;return self.getZoomHeaders().then(function(zoomLevelHeaders){var chrIdx1,chrIdx2,chr1,chr2;return chrIdx1=0,chrIdx2=self.chromTree.idToChrom.length-1,chr1=self.chromTree.idToChrom[chrIdx1],chr2=self.chromTree.idToChrom[chrIdx2],self.readFeatures(chr1,0,chr2,Number.MAX_VALUE,bpPerPixel,windowFunction)})},igv.BWReader.prototype.readFeatures=function(chr1,bpStart,chr2,bpEnd,bpPerPixel,windowFunction){var decodeFunction,chrIdx1,chrIdx2,self=this,bufferedReader=new igv.BufferedReader(self.config);return self.getZoomHeaders().then(function(zoomLevelHeaders){var treeOffset,zoomLevelHeader=zoomLevelForScale(bpPerPixel,zoomLevelHeaders);return zoomLevelHeader?(treeOffset=zoomLevelHeader.indexOffset,decodeFunction=decodeZoomData):(treeOffset=self.header.fullIndexOffset,decodeFunction="BigWig"===self.type?decodeWigData:decodeBedData),self.loadRPTree(treeOffset)}).then(function(rpTree){return chrIdx1=self.chromTree.chromToID[chr1],chrIdx2=self.chromTree.chromToID[chr2],void 0===chrIdx1||void 0===chrIdx2?void 0:rpTree.findLeafItemsOverlapping(chrIdx1,bpStart,chrIdx2,bpEnd)}).then(function(leafItems){var promises=[];return leafItems&&0!=leafItems.length?(leafItems.forEach(function(item){promises.push(bufferedReader.dataViewForRange({start:item.dataOffset,size:item.dataSize},!0).then(function(uint8Array){var features=[],inflate=new Zlib.Inflate(uint8Array),plain=inflate.decompress();return decodeFunction(new DataView(plain.buffer),chrIdx1,bpStart,chrIdx2,bpEnd,features,self.chromTree.idToChrom,windowFunction),features}))}),Promise.all(promises)):[]}).then(function(featureArrays){var allFeatures=[];return allFeatures=allFeatures.concat.apply(allFeatures,featureArrays),allFeatures.sort(function(a,b){return a.start-b.start}),allFeatures})},igv.BWReader.prototype.getZoomHeaders=function(){var self=this;return self.zoomLevelHeaders?Promise.resolve(self.zoomLevelHeaders):self.loadHeader().then(function(){return self.zoomLevelHeaders})},igv.BWReader.prototype.loadHeader=function(){function loadZoomHeadersAndChrTree(){var startOffset=BBFILE_HEADER_SIZE,self=this,range={start:startOffset,size:self.header.fullDataOffset-startOffset+5};return igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:range})).then(function(data){var i,zoomNumber,zlh,nZooms=self.header.nZoomLevels,binaryParser=new igv.BinaryParser(new DataView(data));for(self.zoomLevelHeaders=[],self.firstZoomDataOffset=Number.MAX_VALUE,i=1;i<=nZooms;i++)zoomNumber=nZooms-i,zlh=new ZoomLevelHeader(zoomNumber,binaryParser),self.firstZoomDataOffset=Math.min(zlh.dataOffset,self.firstZoomDataOffset),self.zoomLevelHeaders[zoomNumber]=zlh;return self.header.autoSqlOffset>0&&(binaryParser.position=self.header.autoSqlOffset-startOffset,self.autoSql=binaryParser.getString()),self.header.totalSummaryOffset>0&&(binaryParser.position=self.header.totalSummaryOffset-startOffset,self.totalSummary=new BWTotalSummary(binaryParser)),self.header.chromTreeOffset>0&&(binaryParser.position=self.header.chromTreeOffset-startOffset,self.chromTree=new BPTree(binaryParser,startOffset)),binaryParser.position=self.header.fullDataOffset-startOffset,self.dataCount=binaryParser.getInt(),self.header})}var self=this;return igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:0,size:BBFILE_HEADER_SIZE}})).then(function(data){var header;self.littleEndian=!0;var binaryParser=new igv.BinaryParser(new DataView(data)),magic=binaryParser.getUInt();if(magic===BIGWIG_MAGIC_LTH)self.type="BigWig";else if(magic==BIGBED_MAGIC_LTH)self.type="BigBed";else{self.littleEndian=!1,binaryParser.littleEndian=!1,binaryParser.position=0;var magic=binaryParser.getUInt();magic===BIGWIG_MAGIC_HTL?self.type="BigWig":magic==BIGBED_MAGIC_HTL&&(self.type="BigBed")}return header={},header.bwVersion=binaryParser.getUShort(),header.nZoomLevels=binaryParser.getUShort(),header.chromTreeOffset=binaryParser.getLong(),header.fullDataOffset=binaryParser.getLong(),header.fullIndexOffset=binaryParser.getLong(),header.fieldCount=binaryParser.getUShort(),header.definedFieldCount=binaryParser.getUShort(),header.autoSqlOffset=binaryParser.getLong(),header.totalSummaryOffset=binaryParser.getLong(),header.uncompressBuffSize=binaryParser.getInt(),header.reserved=binaryParser.getLong(),header}).then(function(header){return self.header=header,loadZoomHeadersAndChrTree.call(self)})},igv.BWReader.prototype.loadRPTree=function(offset){var self=this,rpTree=self.rpTreeCache[offset];return rpTree?Promise.resolve(rpTree):(rpTree=new RPTree(offset,self.contentLength,self.config,self.littleEndian),self.rpTreeCache[offset]=rpTree,rpTree.load())},RPTree.prototype.load=function(){var self=this,rootNodeOffset=self.fileOffset+RPTREE_HEADER_SIZE,bufferedReader=new igv.BufferedReader(self.config,self.filesize,BUFFER_SIZE);return self.readNode(rootNodeOffset,bufferedReader).then(function(node){return self.rootNode=node,self})},RPTree.prototype.readNode=function(filePosition,bufferedReader){var count,isLeaf,self=this;return bufferedReader.dataViewForRange({start:filePosition,size:4},!1).then(function(dataView){var binaryParser,type,reserved;binaryParser=new igv.BinaryParser(dataView,self.littleEndian),type=binaryParser.getByte(),isLeaf=1===type,reserved=binaryParser.getByte(),count=binaryParser.getUShort(),filePosition+=4;var bytesRequired=count*(isLeaf?RPTREE_NODE_LEAF_ITEM_SIZE:RPTREE_NODE_CHILD_ITEM_SIZE),range2={start:filePosition,size:bytesRequired};return bufferedReader.dataViewForRange(range2,!1)}).then(function(dataView){var i,items=new Array(count),binaryParser=new igv.BinaryParser(dataView);if(isLeaf){for(i=0;i<count;i++){var item={isLeaf:!0,startChrom:binaryParser.getInt(),startBase:binaryParser.getInt(),endChrom:binaryParser.getInt(),endBase:binaryParser.getInt(),dataOffset:binaryParser.getLong(),dataSize:binaryParser.getLong()};items[i]=item}return new RPTreeNode(items)}for(i=0;i<count;i++){var item={isLeaf:!1,startChrom:binaryParser.getInt(),startBase:binaryParser.getInt(),endChrom:binaryParser.getInt(),endBase:binaryParser.getInt(),childOffset:binaryParser.getLong()};items[i]=item}return new RPTreeNode(items)})},RPTree.prototype.findLeafItemsOverlapping=function(chrIdx1,startBase,chrIdx2,endBase){var self=this;return new Promise(function(fulfill,reject){function findLeafItems(node,nodeId){if(overlaps(node,chrIdx1,startBase,chrIdx2,endBase)){var items=node.items;items.forEach(function(item){overlaps(item,chrIdx1,startBase,chrIdx2,endBase)&&(item.isLeaf?leafItems.push(item):item.childNode?findLeafItems(item.childNode):(processing.add(item.childOffset),self.readNode(item.childOffset,bufferedReader).then(function(node){item.childNode=node,findLeafItems(node,item.childOffset)}).catch(reject)))})}void 0!=nodeId&&processing.delete(nodeId),0===processing.size&&fulfill(leafItems)}var leafItems=[],processing=new Set,bufferedReader=new igv.BufferedReader(self.config,self.filesize,BUFFER_SIZE);processing.add(0),findLeafItems(self.rootNode,0)})},BWTotalSummary.prototype.updateStats=function(stats){this.basesCovered+=stats.count,this.sumData+=status.sumData,this.sumSquares+=sumSquares,this.minVal=MIN(_minVal,min),this.maxVal=MAX(_maxVal,max),computeStats.call(this)},igv}(igv||{}),igv=function(igv){return igv.BWSource=function(config){this.reader=new igv.BWReader(config),this.cache=!0,this.wgValues={}},igv.BWSource.prototype.getFeatures=function(chr,bpStart,bpEnd,bpPerPixel,windowFunction){var self=this,featureCache=self.featureCache,genomicInterval=new igv.GenomicInterval(chr,bpStart,bpEnd);return genomicInterval.bpPerPixel=bpPerPixel,"all"===chr.toLowerCase()?self.getWGValues(windowFunction):featureCache&&featureCache.range.bpPerPixel===bpPerPixel&&featureCache.range.containsRange(genomicInterval)?Promise.resolve(self.featureCache.queryFeatures(chr,bpStart,bpEnd)):self.reader.readFeatures(chr,bpStart,chr,bpEnd,bpPerPixel,windowFunction).then(function(features){return self.cache&&(self.featureCache=new igv.FeatureCache(features,genomicInterval)),features})},igv.BWSource.prototype.getDefaultRange=function(){return void 0!=this.reader.totalSummary?this.reader.totalSummary.defaultRange:void 0},igv.BWSource.prototype.getWGValues=function(windowFunction){var bpPerPixel,self=this,nominalScreenWidth=500;return self.wgValues[windowFunction]?Promise.resolve(self.wgValues[windowFunction]):(bpPerPixel=igv.browser.genome.getGenomeLength()/nominalScreenWidth,self.reader.readWGFeatures(igv.browser.genome,bpPerPixel,windowFunction).then(function(features){var wgValues=[];return features.forEach(function(f){var wgFeature,offset,chr;chr=f.chr,offset=igv.browser.genome.getCumulativeOffset(chr),wgFeature=Object.assign({},f),wgFeature.chr="all",wgFeature.start=offset+f.start,wgFeature.end=offset+f.end,wgValues.push(wgFeature)}),self.wgValues[windowFunction]=wgValues,wgValues}))},igv}(igv||{}),igv=function(igv){function VPointer(block,offset){this.block=block,this.offset=offset}return igv.BinaryParser=function(dataView,littleEndian){this.littleEndian=!littleEndian||littleEndian,this.position=0,this.view=dataView,this.length=dataView.byteLength},igv.BinaryParser.prototype.available=function(){return this.length-this.position},igv.BinaryParser.prototype.remLength=function(){return this.length-this.position},igv.BinaryParser.prototype.hasNext=function(){return this.position<this.length-1},igv.BinaryParser.prototype.getByte=function(){var retValue=this.view.getUint8(this.position,this.littleEndian);return this.position++,retValue},igv.BinaryParser.prototype.getShort=function(){var retValue=this.view.getInt16(this.position,this.littleEndian);return this.position+=2,retValue},igv.BinaryParser.prototype.getUShort=function(){var retValue=this.view.getUint16(this.position,this.littleEndian);return this.position+=2,retValue},igv.BinaryParser.prototype.getInt=function(){var retValue=this.view.getInt32(this.position,this.littleEndian);return this.position+=4,retValue},igv.BinaryParser.prototype.getUInt=function(){var retValue=this.view.getUint32(this.position,this.littleEndian);return this.position+=4,retValue},igv.BinaryParser.prototype.getLong=function(){var b=[];b[0]=this.view.getUint8(this.position),b[1]=this.view.getUint8(this.position+1),b[2]=this.view.getUint8(this.position+2),b[3]=this.view.getUint8(this.position+3),b[4]=this.view.getUint8(this.position+4),b[5]=this.view.getUint8(this.position+5),b[6]=this.view.getUint8(this.position+6),b[7]=this.view.getUint8(this.position+7);var value=0;if(this.littleEndian)for(var i=b.length-1;i>=0;i--)value=256*value+b[i];else for(var i=0;i<b.length;i++)value=256*value+b[i];return this.position+=8,value},igv.BinaryParser.prototype.getString=function(len){for(var c,s="";0!=(c=this.view.getUint8(this.position++))&&(s+=String.fromCharCode(c),!len||s.length!=len););return s},igv.BinaryParser.prototype.getFixedLengthString=function(len){var i,c,s="";for(i=0;i<len;i++)c=this.view.getUint8(this.position++),c>0&&(s+=String.fromCharCode(c));return s},igv.BinaryParser.prototype.getFixedLengthTrimmedString=function(len){var i,c,s="";for(i=0;i<len;i++)c=this.view.getUint8(this.position++),c>32&&(s+=String.fromCharCode(c));return s},igv.BinaryParser.prototype.getFloat=function(){var retValue=this.view.getFloat32(this.position,this.littleEndian);return this.position+=4,retValue},igv.BinaryParser.prototype.getDouble=function(){var retValue=this.view.getFloat64(this.position,this.littleEndian);return this.position+=8,retValue},igv.BinaryParser.prototype.skip=function(n){return this.position+=n,this.position},igv.BinaryParser.prototype.getVPointer=function(){var position=this.position,offset=this.view.getUint8(position+1)<<8|this.view.getUint8(position),byte6=4294967296*(255&this.view.getUint8(position+6)),byte5=16777216*(255&this.view.getUint8(position+5)),byte4=65536*(255&this.view.getUint8(position+4)),byte3=256*(255&this.view.getUint8(position+3)),byte2=255&this.view.getUint8(position+2),block=byte6+byte5+byte4+byte3+byte2;return this.position+=8,new VPointer(block,offset)},VPointer.prototype.isLessThan=function(vp){return this.block<vp.block||this.block===vp.block&&this.offset<vp.offset},VPointer.prototype.isGreaterThan=function(vp){return this.block>vp.block||this.block===vp.block&&this.offset>vp.offset},VPointer.prototype.print=function(){return""+this.block+":"+this.offset},igv}(igv||{}),igv=function(igv){function initialize(options){var genomeId;this.flanking=options.flanking,this.type=options.type||"IGV",this.crossDomainProxy=options.crossDomainProxy,this.formats=options.formats,this.trackDefaults=options.trackDefaults,options.search?this.searchConfig={type:"json",url:options.search.url,coords:void 0===options.search.coords?1:options.search.coords,chromosomeField:options.search.chromosomeField||"chromosome",startField:options.search.startField||"start",endField:options.search.endField||"end",resultsField:options.search.resultsField}:(genomeId=options.reference&&options.reference.id?options.reference.id:options.genome?options.genome:"hg19",this.searchConfig={type:"plain",url:"https://portals.broadinstitute.org/webservices/igv/locus?genome=$GENOME$&name=$FEATURE$",coords:0,chromosomeField:"chromosome",startField:"start",endField:"end"})}function parseSearchResults(data){var lines=data.splitLines(),linesTrimmed=[],results=[];return lines.forEach(function(item){""===item||linesTrimmed.push(item)}),linesTrimmed.forEach(function(line){var source,locusTokens,rangeTokens,tokens=line.split("\t");tokens.length>=3&&(locusTokens=tokens[1].split(":"),rangeTokens=locusTokens[1].split("-"),source=tokens[2].trim(),results.push({gene:tokens[0],chromosome:igv.browser.genome.getChromosomeName(locusTokens[0].trim()),start:parseInt(rangeTokens[0].replace(/,/g,"")),end:parseInt(rangeTokens[1].replace(/,/g,"")),type:"gtex"===source?"snp":"gene"}))}),results}function attachTrackContainerMouseHandlers(trackContainerDiv){function mouseUpOrOut(e){isRulerTrack||igv.browser.$cursorTrackingGuide&&e.toElement===igv.browser.$cursorTrackingGuide.get(0)&&"mouseleave"===e.type||(isDragging&&(igv.browser.fireEvent("trackdragend"),isDragging=!1),isMouseDown=!1,mouseDownX=lastMouseX=void 0,$viewport=viewport=void 0,referenceFrame=void 0)}var $viewport,viewport,viewports,referenceFrame,isRulerTrack=!1,isMouseDown=!1,isDragging=!1,lastMouseX=void 0,mouseDownX=void 0;$(trackContainerDiv).mousedown(function(e){var coords,$target;return e.preventDefault(),igv.popover&&igv.popover.hide(),$target=$(e.target),$viewport=$target.parents(".igv-viewport-div"),0===_.size($viewport)?void($viewport=void 0):(isRulerTrack=!!$target.parents("div[data-ruler-track='rulerTrack']").get(0),void(isRulerTrack||(isMouseDown=!0,coords=igv.translateMouseCoordinates(e,$viewport.get(0)),mouseDownX=lastMouseX=coords.x,viewport=igv.Viewport.viewportWithID($viewport.data("viewport")),referenceFrame=viewport.genomicState.referenceFrame,viewports=igv.Viewport.viewportsWithLocusIndex($viewport.data("locusindex")))))}),$(trackContainerDiv).mousemove(function(e){var xy,_left,$element=igv.browser.$cursorTrackingGuide;e.preventDefault(),xy=igv.translateMouseCoordinates(e,trackContainerDiv),_left=Math.max(50,xy.x-5),_left=Math.min(igv.browser.trackContainerDiv.clientWidth-65,_left),$element.css({left:_left+"px"})}),$(trackContainerDiv).mousemove(igv.throttle(function(e){var coords,maxEnd,maxStart;if(e.preventDefault(),!0!==isRulerTrack&&void 0!==$viewport&&($viewport&&(coords=igv.translateMouseCoordinates(e,$viewport.get(0))),referenceFrame&&isMouseDown)){if(mouseDownX&&Math.abs(coords.x-mouseDownX)>igv.browser.constants.dragThreshold){if(igv.browser.loadInProgress())return;isDragging=!0,referenceFrame.shiftPixels(lastMouseX-coords.x),referenceFrame.start=Math.max(0,referenceFrame.start);var chromosome=igv.browser.genome.getChromosome(referenceFrame.chrName);maxEnd=chromosome.bpLength,maxStart=maxEnd-viewport.$viewport.width()*referenceFrame.bpPerPixel,referenceFrame.start>maxStart&&(referenceFrame.start=maxStart),igv.browser.updateLocusSearchWithGenomicState(_.first(igv.browser.genomicStateList)),igv.browser.repaintWithLocusIndex(viewport.genomicState.locusIndex),igv.browser.fireEvent("trackdrag")}lastMouseX=coords.x}},10)),$(trackContainerDiv).mouseup(mouseUpOrOut),$(trackContainerDiv).mouseleave(mouseUpOrOut)}function presentSearchResults(loci,config,feature){igv.browser.$searchResultsTable.empty(),igv.browser.$searchResults.show(),loci.forEach(function(locus){var row=$("<tr>");row.text(locus.locusString),row.click(function(){igv.browser.$searchResults.hide(),handleSearchResult(feature,locus[config.chromosomeField],locus[config.startField]-config.coords,locus[config.endField],locus.featureType||locus.type)}),igv.browser.$searchResultsTable.append(row)})}function handleSearchResult(name,chr,start,end,type){igv.browser.selection=new igv.GtexSelection("gtex"===type||"snp"===type?{snp:name}:{gene:name}),void 0===end&&(end=start+1),igv.browser.flanking&&(start=Math.max(0,start-igv.browser.flanking),end+=igv.browser.flanking),igv.browser.goto(chr,start,end),fireOnsearch.call(igv.browser,name,type)}function fireOnsearch(feature,type){this.trackViews.forEach(function(tp){var track=tp.track;track.onsearch&&track.onsearch(feature,type)})}return igv.Browser=function(options,trackContainerDiv){this.config=options,igv.browser=this,igv.browser.$root=$('<div id="igvRootDiv" class="igv-root-div">'),initialize.call(this,options),$("input[id='trackHeightInput']").val(this.trackHeight),this.trackContainerDiv=trackContainerDiv,attachTrackContainerMouseHandlers(this.trackContainerDiv),this.trackViews=[],this.trackLabelsVisible=!0,this.featureDB={},this.constants={dragThreshold:3,defaultColor:"rgb(0,0,150)",doubleClickDelay:options.doubleClickDelay||500},this.eventHandlers={},window.onresize=igv.throttle(function(){igv.browser.resize()},10),$(document).mousedown(function(e){igv.browser.isMouseDown=!0}),$(document).mouseup(function(e){igv.browser.isMouseDown=void 0,igv.browser.dragTrackView&&igv.browser.dragTrackView.$trackDragScrim.hide(),igv.browser.dragTrackView=void 0}),$(document).click(function(e){var target=e.target;igv.browser.$root.get(0).contains(target)||igv.popover.hide()})},igv.Browser.hasKnownFileExtension=function(config){var extension=igv.getExtension(config);return void 0!==extension&&igv.Browser.knownFileExtensions.has(extension)},igv.Browser.prototype.disableZoomWidget=function(){this.$zoomContainer.hide()},igv.Browser.prototype.enableZoomWidget=function(){this.$zoomContainer.show()},igv.Browser.prototype.toggleCursorGuide=function(genomicStateList){_.size(genomicStateList)>1||"all"===_.first(genomicStateList).locusSearchString.toLowerCase()?(this.$cursorTrackingGuide.is(":visible")&&this.$cursorTrackingGuideToggle.click(),this.$cursorTrackingGuideToggle.hide()):this.$cursorTrackingGuideToggle.show()},igv.Browser.prototype.toggleCenterGuide=function(genomicStateList){_.size(genomicStateList)>1||"all"===_.first(genomicStateList).locusSearchString.toLowerCase()?(this.centerGuide.$container.is(":visible")&&this.centerGuide.$centerGuideToggle.click(),this.centerGuide.$centerGuideToggle.hide()):this.centerGuide.$centerGuideToggle.show()},igv.Browser.prototype.loadTracksWithConfigList=function(configList){var self=this,loadedTracks=[];return _.each(configList,function(config){var track=self.loadTrack(config);track&&loadedTracks.push(track)}),_.each(this.trackViews,function(trackView){trackView.resize()}),loadedTracks},igv.Browser.prototype.loadTrack=function(config){var settings,property,newTrack,self=this;if(igv.inferTrackTypes(config),this.trackDefaults&&config.type&&(settings=this.trackDefaults[config.type]))for(property in settings)settings.hasOwnProperty(property)&&void 0===config[property]&&(config[property]=settings[property]);return newTrack=igv.createTrack(config),void 0===newTrack?(igv.presentAlert("Unknown file type: "+config.url),newTrack):(void 0===newTrack.order&&(newTrack.order=this.trackViews.length),"function"==typeof newTrack.getFileHeader?newTrack.getFileHeader().then(function(header){self.addTrack(newTrack)}).catch(function(error){igv.presentAlert(error)}):self.addTrack(newTrack),newTrack)},igv.Browser.prototype.addTrack=function(track){var trackView;"undefined"!=typeof igv.popover&&igv.popover.hide(),trackView=new igv.TrackView(this,$(this.trackContainerDiv),track),this.trackViews.push(trackView),this.reorderTracks(),trackView.update()},igv.Browser.prototype.reorderTracks=function(){var myself=this;this.trackViews.sort(function(a,b){var aOrder=a.track.order||0,bOrder=b.track.order||0;return aOrder-bOrder}),$(this.trackContainerDiv).children("igv-track-div").detach(),this.trackViews.forEach(function(trackView){myself.trackContainerDiv.appendChild(trackView.trackDiv)})},igv.Browser.prototype.removeTrackByName=function(name){var remove;remove=_.first(_.filter(this.trackViews,function(trackView){return name===trackView.track.name})),this.removeTrack(remove.track)},igv.Browser.prototype.removeTrack=function(track){for(var trackPanelRemoved,i=0;i<this.trackViews.length;i++)if(track===this.trackViews[i].track){trackPanelRemoved=this.trackViews[i];break}trackPanelRemoved&&(this.trackViews.splice(i,1),this.trackContainerDiv.removeChild(trackPanelRemoved.trackDiv),this.fireEvent("trackremoved",[trackPanelRemoved.track]))},igv.Browser.prototype.findTracks=function(property,value){var tracks=[];return this.trackViews.forEach(function(trackView){value===trackView.track[property]&&tracks.push(trackView.track)}),tracks},igv.Browser.prototype.reduceTrackOrder=function(trackView){var raisable,raiseableOrder,indices=[];1!==this.trackViews.length&&(this.trackViews.forEach(function(tv,i,tvs){indices.push({trackView:tv,index:i}),trackView===tv&&(raisable=indices[i])}),0!==raisable.index&&(raiseableOrder=raisable.trackView.track.order,raisable.trackView.track.order=indices[raisable.index-1].trackView.track.order,indices[raisable.index-1].trackView.track.order=raiseableOrder,this.reorderTracks()))},igv.Browser.prototype.increaseTrackOrder=function(trackView){var raisable,raiseableOrder,indices=[];1!==this.trackViews.length&&(this.trackViews.forEach(function(tv,i,tvs){indices.push({trackView:tv,index:i}),trackView===tv&&(raisable=indices[i])}),this.trackViews.length-1!==raisable.index&&(raiseableOrder=raisable.trackView.track.order,raisable.trackView.track.order=indices[1+raisable.index].trackView.track.order,indices[1+raisable.index].trackView.track.order=raiseableOrder,this.reorderTracks()))},igv.Browser.prototype.setTrackHeight=function(newHeight){this.trackHeight=newHeight,this.trackViews.forEach(function(trackView){trackView.setTrackHeight(newHeight)})},igv.Browser.prototype.resize=function(){function resizeWillExceedChromosomeLength(trackViews){var result,trackView,viewport,pixel,bpp,bp;return _.size(trackViews)>0?(trackView=_.first(trackViews),_.size(trackView.viewports)>0?(viewport=_.first(trackView.viewports),pixel=viewport.$viewport.width(),bpp=viewport.genomicState.referenceFrame.bpPerPixel,bp=pixel*bpp,result=bp>viewport.genomicState.chromosome.bpLength):result=!1):result=!1,result}var viewport;!0===resizeWillExceedChromosomeLength(this.trackViews)?(viewport=_.first(_.first(this.trackViews).viewports),this.parseSearchInput(viewport.genomicState.chromosome.name)):_.each(_.union([this.ideoPanel,this.karyoPanel,this.centerGuide],this.trackViews),function(renderable){renderable&&renderable.resize()})},igv.Browser.prototype.repaint=function(){_.each(_.union([this.ideoPanel,this.karyoPanel,this.centerGuide],this.trackViews),function(renderable){renderable&&renderable.repaint()})},igv.Browser.prototype.repaintWithLocusIndex=function(locusIndex){this.karyoPanel&&this.karyoPanel.repaint(),this.ideoPanel&&igv.IdeoPanel.repaintPanel(this.ideoPanel.panelWithLocusIndex(locusIndex)),_.each(igv.Viewport.viewportsWithLocusIndex(locusIndex),function(viewport){viewport.repaint()})},igv.Browser.prototype.update=function(){this.updateLocusSearchWithGenomicState(_.first(this.genomicStateList)),this.windowSizePanel.updateWithGenomicState(_.first(this.genomicStateList)),_.each([this.ideoPanel,this.karyoPanel,this.centerGuide],function(renderable){renderable&&renderable.repaint()}),_.each(this.trackViews,function(trackView){trackView.update()})},igv.Browser.prototype.updateWithLocusIndex=function(locusIndex){igv.browser.updateLocusSearchWithGenomicState(_.first(this.genomicStateList)),0===locusIndex&&this.windowSizePanel.updateWithGenomicState(this.genomicStateList[locusIndex]),this.ideoPanel&&igv.IdeoPanel.repaintPanel(this.ideoPanel.panelWithLocusIndex(locusIndex)),this.karyoPanel&&this.karyoPanel.repaint(),_.each(igv.Viewport.viewportsWithLocusIndex(locusIndex),function(viewport){viewport.update()}),this.centerGuide&&this.centerGuide.repaint()},igv.Browser.prototype.loadInProgress=function(){var anyTrackViewIsLoading;return anyTrackViewIsLoading=!1,_.each(this.trackViews,function(t){!1===anyTrackViewIsLoading&&(anyTrackViewIsLoading=t.isLoading())}),anyTrackViewIsLoading},igv.Browser.prototype.updateLocusSearchWithGenomicState=function(genomicState){var referenceFrame,ss,ee,str,end,chromosome,self=this;0===genomicState.locusIndex&&1===genomicState.locusCount?"all"===genomicState.locusSearchString.toLowerCase()?(this.$searchInput.val(genomicState.locusSearchString),this.chromosomeSelectWidget.$select.val("all")):(referenceFrame=genomicState.referenceFrame,this.chromosomeSelectWidget.$select.val(referenceFrame.chrName),this.$searchInput&&(end=referenceFrame.start+referenceFrame.bpPerPixel*(self.viewportContainerWidth()/genomicState.locusCount),this.genome&&(chromosome=this.genome.getChromosome(referenceFrame.chrName),chromosome&&(end=Math.min(end,chromosome.bpLength))),ss=igv.numberFormatter(Math.floor(referenceFrame.start+1)),ee=igv.numberFormatter(Math.floor(end)),str=referenceFrame.chrName+":"+ss+"-"+ee,this.$searchInput.val(str)),this.fireEvent("locuschange",[referenceFrame,str])):this.$searchInput.val("")},igv.Browser.prototype.syntheticViewportContainerBBox=function(){var $trackContainer=$(this.trackContainerDiv),$track=$('<div class="igv-track-div">'),$viewportContainer=$('<div class="igv-viewport-container igv-viewport-container-shim">'),rect={};return $trackContainer.append($track),$track.append($viewportContainer),rect={position:$viewportContainer.position(),width:$viewportContainer.width(),height:$viewportContainer.height()},$track.remove(),rect},igv.Browser.prototype.syntheticViewportContainerWidth=function(){return this.syntheticViewportContainerBBox().width},igv.Browser.prototype.viewportContainerWidth=function(){return this.trackViews&&this.trackViews.length>0?this.trackViews[0].$viewportContainer.width():this.syntheticViewportContainerWidth()},igv.Browser.prototype.minimumBasesExtent=function(){return this.config.minimumBases},igv.Browser.prototype.goto=function(chrName,start,end){var genomicState,viewportWidth,referenceFrame,width,maxBpPerPixel;
+return igv.popover&&igv.popover.hide(),void 0===this.genome?void console.log("Missing genome - bailing ..."):(genomicState=_.first(this.genomicStateList),genomicState.chromosome=this.genome.getChromosome(chrName),viewportWidth=igv.browser.viewportContainerWidth()/genomicState.locusCount,referenceFrame=genomicState.referenceFrame,referenceFrame.chrName=genomicState.chromosome.name,void 0===end?(width=Math.round(viewportWidth*referenceFrame.bpPerPixel/2),start=Math.max(0,start-width)):referenceFrame.bpPerPixel=(end-start)/viewportWidth,genomicState.chromosome?(genomicState.chromosome.bpLength||(genomicState.chromosome.bpLength=1),maxBpPerPixel=genomicState.chromosome.bpLength/viewportWidth,referenceFrame.bpPerPixel>maxBpPerPixel&&(referenceFrame.bpPerPixel=maxBpPerPixel),void 0===end&&(end=start+viewportWidth*referenceFrame.bpPerPixel),genomicState.chromosome&&end>genomicState.chromosome.bpLength&&(start-=end-genomicState.chromosome.bpLength)):console&&console.log&&console.log("Could not find chromsome "+referenceFrame.chrName),referenceFrame.start=start,void this.update())},igv.Browser.prototype.zoomIn=function(){function zoomInWithLocusIndex(browser,locusIndex){function basesExtent(width,bpp){return Math.floor(width*bpp)}var centerBP,mbe,be,genomicState=browser.genomicStateList[locusIndex],referenceFrame=genomicState.referenceFrame,viewportWidth=Math.floor(browser.viewportContainerWidth()/genomicState.locusCount);mbe=browser.minimumBasesExtent(),be=basesExtent(viewportWidth,referenceFrame.bpPerPixel/2),mbe>be||(centerBP=referenceFrame.start+referenceFrame.bpPerPixel*(viewportWidth/2),referenceFrame.start=centerBP-viewportWidth/2*(referenceFrame.bpPerPixel/2),referenceFrame.bpPerPixel/=2,browser.updateWithLocusIndex(locusIndex))}var self=this;this.loadInProgress()||_.each(_.range(_.size(this.genomicStateList)),function(locusIndex){zoomInWithLocusIndex(self,locusIndex)})},igv.Browser.prototype.zoomOut=function(){function zoomOutWithLocusIndex(browser,locusIndex){var chromosome,newScale,maxScale,centerBP,chromosomeLengthBP,widthBP,genomicState=igv.browser.genomicStateList[locusIndex],referenceFrame=genomicState.referenceFrame,viewportWidth=Math.floor(browser.viewportContainerWidth()/genomicState.locusCount);newScale=2*referenceFrame.bpPerPixel,chromosomeLengthBP=25e7,browser.genome&&(chromosome=browser.genome.getChromosome(referenceFrame.chrName),chromosome&&(chromosomeLengthBP=chromosome.bpLength)),maxScale=chromosomeLengthBP/viewportWidth,newScale>maxScale&&(newScale=maxScale),centerBP=referenceFrame.start+referenceFrame.bpPerPixel*viewportWidth/2,widthBP=newScale*viewportWidth,referenceFrame.start=Math.round(centerBP-widthBP/2),referenceFrame.start<0?referenceFrame.start=0:referenceFrame.start>chromosomeLengthBP-widthBP&&(referenceFrame.start=chromosomeLengthBP-widthBP),referenceFrame.bpPerPixel=newScale,browser.updateWithLocusIndex(locusIndex)}var self=this;this.loadInProgress()||_.each(_.range(_.size(this.genomicStateList)),function(locusIndex){zoomOutWithLocusIndex(self,locusIndex)})},igv.Browser.prototype.selectMultiLocusPanelWithGenomicState=function(genomicState){this.multiLocusPanelLayoutWithTruthFunction(function(candidate){return _.isEqual(candidate,genomicState)})},igv.Browser.prototype.closeMultiLocusPanelWithGenomicState=function(genomicState){this.multiLocusPanelLayoutWithTruthFunction(function(candidate){return!_.isEqual(candidate,genomicState)})},igv.Browser.prototype.multiLocusPanelLayoutWithTruthFunction=function(filterFunction){var filtered,self=this,$content_header=$("#igv-content-header");!0===this.config.showIdeogram&&igv.IdeoPanel.$empty($content_header),this.emptyViewportContainers(),filtered=_.filter(_.clone(this.genomicStateList),function(gs){return filterFunction(gs)}),this.genomicStateList=_.map(filtered,function(f,i,list){return f.locusIndex=i,f.locusCount=_.size(list),f.referenceFrame.bpPerPixel=(f.end-f.start)/(self.viewportContainerWidth()/f.locusCount),f}),!0===this.config.showIdeogram&&this.ideoPanel.buildPanels($content_header),this.buildViewportsWithGenomicStateList(this.genomicStateList),this.zoomWidgetLayout(),this.toggleCenterGuide(this.genomicStateList),this.toggleCursorGuide(this.genomicStateList),this.resize()},igv.Browser.prototype.emptyViewportContainers=function(){$(".igv-scrollbar-outer-div").remove(),$(".igv-viewport-div").remove(),$(".igv-ruler-sweeper-div").remove(),_.each(this.trackViews,function(trackView){trackView.viewports=[],trackView.scrollbar=void 0,_.each(_.keys(trackView.track.rulerSweepers),function(key){trackView.track.rulerSweepers[key]=void 0}),trackView.track.rulerSweepers=void 0})},igv.Browser.prototype.buildViewportsWithGenomicStateList=function(genomicStateList){_.each(this.trackViews,function(trackView){_.each(genomicStateList,function(genomicState,i){trackView.viewports.push(new igv.Viewport(trackView,trackView.$viewportContainer,i)),trackView.track instanceof igv.RulerTrack&&trackView.track.createRulerSweeper(trackView.viewports[i],trackView.viewports[i].$viewport,$(trackView.viewports[i].contentDiv),genomicState)}),trackView.configureViewportContainer(trackView.$viewportContainer,trackView.viewports)})},igv.Browser.prototype.parseSearchInput=function(string){var self=this,loci=string.split(" ");this.getGenomicStateList(loci,this.viewportContainerWidth()).then(function(genomicStateList){var errorString,$content_header=$("#igv-content-header");_.size(genomicStateList)>0?(_.each(genomicStateList,function(genomicState,index){genomicState.locusIndex=index,genomicState.locusCount=_.size(genomicStateList),genomicState.referenceFrame=new igv.ReferenceFrame(genomicState.chromosome.name,genomicState.start,(genomicState.end-genomicState.start)/(self.viewportContainerWidth()/genomicState.locusCount)),genomicState.initialReferenceFrame=JSON.parse(JSON.stringify(genomicState.referenceFrame))}),self.genomicStateList=genomicStateList,self.emptyViewportContainers(),self.updateLocusSearchWithGenomicState(_.first(self.genomicStateList)),self.zoomWidgetLayout(),self.toggleCenterGuide(self.genomicStateList),self.toggleCursorGuide(self.genomicStateList),!0===self.config.showIdeogram&&(igv.IdeoPanel.$empty($content_header),self.ideoPanel.buildPanels($content_header)),self.buildViewportsWithGenomicStateList(genomicStateList),self.update()):(errorString="Unrecognized locus "+string,igv.presentAlert(errorString))})},igv.Browser.prototype.zoomWidgetLayout=function(){var found;found=_.filter(this.genomicStateList,function(g){return"all"===g.locusSearchString.toLowerCase()}),_.size(found)>0?this.disableZoomWidget():this.enableZoomWidget()},igv.Browser.prototype.getGenomicStateList=function(loci,viewportContainerWidth,continuation){function createFeatureDBGenomicState(featureDBLookupResult){var start,end,locusString,geneNameLocusObject;return end=void 0===featureDBLookupResult.end?1+featureDBLookupResult.start:featureDBLookupResult.end,igv.browser.flanking&&(start=Math.max(0,featureDBLookupResult.start-igv.browser.flanking),end+=igv.browser.flanking),locusString=featureDBLookupResult.chr+":"+start.toString()+"-"+end.toString(),geneNameLocusObject={},igv.Browser.isLocusChrNameStartEnd(locusString,self.genome,geneNameLocusObject)?(geneNameLocusObject.selection=new igv.GtexSelection({gene:featureDBLookupResult.name}),geneNameLocusObject):void 0}function createGeneNameGenomicState(geneNameLookupResponse){var results,result,chr,start,end,type,string,geneNameLocusObject;return results="plain"===searchConfig.type?parseSearchResults(geneNameLookupResponse):JSON.parse(geneNameLookupResponse),searchConfig.resultsField&&(results=results[searchConfig.resultsField]),0===_.size(results)?void 0:1===_.size(results)?(result=_.first(results),chr=result[searchConfig.chromosomeField],start=result[searchConfig.startField]-searchConfig.coords,end=result[searchConfig.endField],void 0===end&&(end=start+1),igv.browser.flanking&&(start=Math.max(0,start-igv.browser.flanking),end+=igv.browser.flanking),string=chr+":"+start.toString()+"-"+end.toString(),geneNameLocusObject={},igv.Browser.isLocusChrNameStartEnd(string,self.genome,geneNameLocusObject)?(type=result.featureType||result.type,geneNameLocusObject.locusSearchString=_.first(geneNameLookupResponse.split("\t")),geneNameLocusObject.selection=new igv.GtexSelection("gtex"===type||"snp"===type?{snp:result.gene}:{gene:result.gene}),geneNameLocusObject):void 0):void 0}var chrStartEndLoci,geneNameLoci,locusGenomicState,featureDBGenomicStates,survivors,promises,self=this,searchConfig=igv.browser.searchConfig,locusGenomicStates=[];return chrStartEndLoci=[],loci.forEach(function(locus){locusGenomicState={},igv.Browser.isLocusChrNameStartEnd(locus,self.genome,locusGenomicState)&&(locusGenomicState.selection=void 0,locusGenomicState.locusSearchString=locus,locusGenomicStates.push(locusGenomicState),chrStartEndLoci.push(locus))}),geneNameLoci=_.difference(loci,chrStartEndLoci),geneNameLoci.length>0?(survivors=[],featureDBGenomicStates=[],geneNameLoci.forEach(function(locus){var result,genomicState;result=self.featureDB[locus.toUpperCase()],result?(genomicState=createFeatureDBGenomicState(result),genomicState?(genomicState.locusSearchString=locus,featureDBGenomicStates.push(genomicState)):survivors.push(locus)):survivors.push(locus)}),survivors.length>0?(promises=survivors.map(function(locus){var path=searchConfig.url.replace("$FEATURE$",locus);return path.indexOf("$GENOME$")>-1&&(path=path.replace("$GENOME$",self.genome.id?self.genome.id:"hg19")),igv.xhr.loadString(path)}),Promise.all(promises).then(function(response){var filtered,geneNameGenomicStates;return filtered=_.filter(response,function(geneNameLookupResult){return""!==geneNameLookupResult}),geneNameGenomicStates=_.filter(_.map(filtered,createGeneNameGenomicState),function(genomicState){return void 0!==genomicState}),_.union(locusGenomicStates,featureDBGenomicStates,geneNameGenomicStates)})):Promise.resolve(_.union(locusGenomicStates,featureDBGenomicStates))):Promise.resolve(locusGenomicStates)},igv.Browser.prototype.on=function(eventName,fn){this.eventHandlers[eventName]||(this.eventHandlers[eventName]=[]),this.eventHandlers[eventName].push(fn)},igv.Browser.prototype.un=function(eventName,fn){if(this.eventHandlers[eventName]){var callbackIndex=this.eventHandlers[eventName].indexOf(fn);callbackIndex!==-1&&this.eventHandlers[eventName].splice(callbackIndex,1)}},igv.Browser.prototype.fireEvent=function(eventName,args,thisObj){var scope,results;if(void 0!==this.eventHandlers[eventName])return scope=thisObj||window,results=_.map(this.eventHandlers[eventName],function(event){return event.apply(scope,args)}),_.first(results)},igv.Browser.prototype.loadSampleInformation=function(url){var name=url;url instanceof File&&(name=url.name);var ext=name.substr(name.lastIndexOf(".")+1);"fam"===ext&&igv.sampleInformation.loadPlinkFile(url)},igv.Browser.isLocusChrNameStartEnd=function(locus,genome,locusObject){var a,b,numeric,success,chr;return a=locus.split(":"),chr=a[0],"all"===chr.toLowerCase()&&(chr="all"),void 0!==genome.getChromosome(chr)&&(locusObject&&(locusObject.chromosome=genome.getChromosome(chr),locusObject.start=0,locusObject.end=locusObject.chromosome.bpLength),1===a.length||(b=_.last(a).split("-"),!(_.size(b)>2)&&(1===_.size(b)?(numeric=_.first(b).replace(/\,/g,""),success=!isNaN(numeric),!0===success&&locusObject&&(locusObject.start=parseInt(numeric,10),locusObject.start-=1,locusObject.end=void 0)):2===_.size(b)&&(success=!0,_.each(b,function(bb,index){!0===success&&(numeric=bb.replace(/\,/g,""),success=!isNaN(numeric),!0===success&&locusObject&&(0===index?locusObject.start=parseInt(numeric,10)-1:locusObject.end=parseInt(numeric,10)))})),!0===success&&locusObject&&igv.Browser.validateLocusExtent(locusObject.chromosome,locusObject),success)))},igv.Browser.validateLocusExtent=function(chromosome,extent){var center,ss=extent.start,ee=extent.end;void 0===ee?(ss-=igv.browser.minimumBasesExtent()/2,ee=ss+igv.browser.minimumBasesExtent(),ee>chromosome.bpLength?(ee=chromosome.bpLength,ss=ee-igv.browser.minimumBasesExtent()):ss<0&&(ss=0,ee=igv.browser.minimumBasesExtent())):ee-ss<igv.browser.minimumBasesExtent()&&(center=(ee+ss)/2,center-igv.browser.minimumBasesExtent()/2<0?(ss=0,ee=ss+igv.browser.minimumBasesExtent()):center+igv.browser.minimumBasesExtent()/2>chromosome.bpLength?(ee=chromosome.bpLength,ss=ee-igv.browser.minimumBasesExtent()):(ss=center-igv.browser.minimumBasesExtent()/2,ee=ss+igv.browser.minimumBasesExtent())),extent.start=Math.ceil(ss),extent.end=Math.floor(ee)},igv.Browser.prototype.search=function(feature,callback,force){var type,chr,start,end,searchConfig,url,result;if(void 0===igv.browser||void 0===igv.browser.genome)return igv.browser.initialLocus=feature,void(callback&&callback());if(igv.Browser.isLocusChrNameStartEnd(feature,this.genome,void 0)){var success=igv.gotoLocusFeature(feature,this.genome,this);(force||!0===success)&&callback&&callback()}else if(result=this.featureDB[feature.toUpperCase()])handleSearchResult(result.name,result.chrName,result.start,result.end,"");else if(this.searchConfig){if(url=this.searchConfig.url.replace("$FEATURE$",feature),searchConfig=this.searchConfig,url.indexOf("$GENOME$")>-1){var genomeId=this.genome.id?this.genome.id:"hg19";url.replace("$GENOME$",genomeId)}igv.xhr.loadString(url).then(function(data){var r,results="plain"===searchConfig.type?parseSearchResults(data):JSON.parse(data);searchConfig.resultsField&&(results=results[searchConfig.resultsField]),0==results.length?igv.presentAlert('No feature found with name "'+feature+'"'):1==results.length?(r=results[0],chr=r[searchConfig.chromosomeField],start=r[searchConfig.startField]-searchConfig.coords,end=r[searchConfig.endField],type=r.featureType||r.type,handleSearchResult(feature,chr,start,end,type)):presentSearchResults(results,searchConfig,feature),callback&&callback()})}},igv.gotoLocusFeature=function(locusFeature,genome,browser){var type,tokens,chr,start,end,chrName,startEnd,obj;return type="locus",tokens=locusFeature.split(":"),chrName=genome.getChromosomeName(tokens[0]),chrName&&(chr=genome.getChromosome(chrName)),chr&&(start=end=void 0,1===tokens.length?(start=0,end=chr.bpLength):(startEnd=tokens[1].split("-"),start=Math.max(0,parseInt(startEnd[0].replace(/,/g,""))-1),2===startEnd.length&&(end=Math.min(chr.bpLength,parseInt(startEnd[1].replace(/,/g,""))),end<0&&(end=chr.bpLength))),obj={start:start,end:end},igv.Browser.validateLocusExtent(chr,obj),start=obj.start,end=obj.end),void 0===chr||isNaN(start)||start>end?(igv.presentAlert("Unrecognized feature or locus: "+locusFeature),!1):(browser.goto(chrName,start,end),fireOnsearch.call(igv.browser,locusFeature,type),!0)},igv}(igv||{}),igv=function(igv){function urlString(assembly,fileFormat){var str;return str="https://www.encodeproject.org/search/?type=experiment&assembly="+assembly+"&files.file_format="+fileFormat+"&format=json&field=lab.title&field=biosample_term_name&field=assay_term_name&field=target.label&field=files.file_format&field=files.output_type&field=files.href&field=files.replicate.technical_replicate_number&field=files.replicate.biological_replicate_number&field=files.assembly&limit=all"}function parseJSONData(json,assembly,fileFormat){var rows;return rows=[],_.each(json["@graph"],function(record){var cellType,target,filtered,mapped;cellType=record.biosample_term_name||"",target=record.target?record.target.label:"",filtered=_.filter(record.files,function(file){return fileFormat===file.file_format&&assembly===file.assembly}),mapped=_.map(filtered,function(file){var bioRep=file.replicate?file.replicate.bioligcal_replicate_number:void 0,techRep=file.replicate?file.replicate.technical_replicate_number:void 0,name=cellType+" "+target;return bioRep&&(name+=" "+bioRep),techRep&&(name+=(bioRep?":":"0:")+techRep),{Assembly:file.assembly,ExperimentID:record["@id"],"Cell Type":cellType,"Assay Type":record.assay_term_name,Target:target,Lab:record.lab?record.lab.title:"",Format:file.file_format,"Output Type":file.output_type,url:"https://www.encodeproject.org"+file.href,"Bio Rep":bioRep,"Tech Rep":techRep,Name:name}}),Array.prototype.push.apply(rows,mapped)}),_.map(rows,function(row){return _.mapObject(row,function(val){return void 0===val||""===val?"-":val})})}function encodeSort(a,b){var aa1,aa2,cc1,cc2,tt1,tt2;return aa1=a.Assembly,aa2=b.Assembly,cc1=a["Cell Type"],cc2=b["Cell Type"],tt1=a.Target,tt2=b.Target,aa1===aa2?cc1===cc2?tt1===tt2?0:tt1<tt2?-1:1:cc1<cc2?-1:1:aa1<aa2?-1:1}return igv.EncodeDataSource=function(columnFormat){this.columnFormat=columnFormat},igv.EncodeDataSource.prototype.retrieveData=function(genomeID){var fileFormat,assembly;return fileFormat="bigWig",assembly=genomeID,igv.xhr.loadJson(urlString(assembly,fileFormat),{}).then(function(json){return parseJSONData(json,assembly,fileFormat)}).then(function(data){return data.sort(encodeSort),Promise.resolve(data)}).catch(function(e){var str;str=e.toString()+" unable to access Encode Project with assembly "+genomeID,igv.presentAlert(str),continuation(void 0)})},igv.EncodeDataSource.prototype.tableData=function(data){var mapped,self=this;return mapped=_.map(data,function(row){return _.values(_.pick(row,_.map(self.columnFormat,function(column){return _.first(_.keys(column))})))})},igv.EncodeDataSource.prototype.tableColumns=function(){var columns;return columns=_.map(this.columnFormat,function(obj){var key,val;return key=_.first(_.keys(obj)),val=_.first(_.values(obj)),{title:key,width:val}})},igv.EncodeDataSource.prototype.dataAtRowIndex=function(data,index){function encodeAntibodyColor(antibody){var colors,key;return colors={DEFAULT:"rgb(3, 116, 178)",H3K27AC:"rgb(200, 0, 0)",H3K27ME3:"rgb(130, 0, 4)",H3K36ME3:"rgb(0, 0, 150)",H3K4ME1:"rgb(0, 150, 0)",H3K4ME2:"rgb(0, 150, 0)",H3K4ME3:"rgb(0, 150, 0)",H3K9AC:"rgb(100, 0, 0)",H3K9ME1:"rgb(100, 0, 0)"},key=void 0===antibody||""===antibody||"-"===antibody?"DEFAULT":antibody.toUpperCase(),colors[key]}var row,obj;return row=data[index],obj={url:row.url,color:encodeAntibodyColor(row.Target),name:row.Name}},igv}(igv||{}),igv=function(igv){function buildConfig(reference){var key,config={};for(key in reference)reference.hasOwnProperty(key)&&!reservedProperties.has(key)&&(config[key]=reference[key]);return config}function getSequenceIndexed(chr,start,end){var self=this;return new Promise(function(fulfill,reject){function getSequenceFromInterval(interval,start,end){var offset=start-interval.start,n=end-start,seq=interval.features?interval.features.substr(offset,n):null;return seq}var interval=self.interval;if(interval&&interval.contains(chr,start,end))fulfill(getSequenceFromInterval(interval,start,end));else{var qstart=start,qend=end;if(end-start<1e5){var w=end-start,center=Math.round(start+w/2);qstart=Math.max(0,center-5e4),qend=center+5e4}self.readSequence(chr,qstart,qend).then(function(seqBytes){self.interval=new igv.GenomicInterval(chr,qstart,qend,seqBytes),fulfill(getSequenceFromInterval(self.interval,start,end))}).catch(reject)}})}function getSequenceNonIndexed(chr,start,end){var self=this;return new Promise(function(fulfill,reject){var seq=self.sequences[chr];seq&&seq.length>end&&fulfill(seq.substring(start,end))})}var reservedProperties=new Set(["fastaURL","indexURL","cytobandURL","indexed"]);return igv.FastaSequence=function(reference){this.file=reference.fastaURL,this.indexed=reference.indexed!==!1,this.indexed&&(this.indexFile=reference.indexURL||reference.indexFile||this.file+".fai"),this.withCredentials=reference.withCredentials,this.config=buildConfig(reference)},igv.FastaSequence.prototype.init=function(){var self=this;return self.indexed?new Promise(function(fulfill,reject){self.getIndex().then(function(index){var order=0;self.chromosomes={},self.chromosomeNames.forEach(function(chrName){var bpLength=self.index[chrName].size;self.chromosomes[chrName]=new igv.Chromosome(chrName,order++,bpLength)}),fulfill()}).catch(reject)}):self.loadAll()},igv.FastaSequence.prototype.getSequence=function(chr,start,end){return this.indexed?getSequenceIndexed.call(this,chr,start,end):getSequenceNonIndexed.call(this,chr,start,end)},igv.FastaSequence.prototype.getIndex=function(){var self=this;return new Promise(function(fulfill,reject){self.index?fulfill(self.index):igv.xhr.load(self.indexFile,igv.buildOptions(self.config)).then(function(data){var lines=data.splitLines(),len=lines.length,lineNo=0;for(self.chromosomeNames=[],self.index={};lineNo<len;){var tokens=lines[lineNo++].split("\t"),nTokens=tokens.length;if(5==nTokens){var chr=tokens[0],size=parseInt(tokens[1]),position=parseInt(tokens[2]),basesPerLine=parseInt(tokens[3]),bytesPerLine=parseInt(tokens[4]),indexEntry={size:size,position:position,basesPerLine:basesPerLine,bytesPerLine:bytesPerLine};self.chromosomeNames.push(chr),self.index[chr]=indexEntry}}fulfill&&fulfill(self.index)}).catch(reject)})},igv.FastaSequence.prototype.loadAll=function(){function parseFasta(data){self.chromosomeNames=[],self.chromosomes={},self.sequences={};for(var nextLine,currentChr,lines=data.splitLines(),len=lines.length,lineNo=0,currentSeq="",order=0;lineNo<len;)nextLine=lines[lineNo++].trim(),nextLine.startsWith("#")||0===nextLine.length||(nextLine.startsWith(">")?(currentSeq&&(self.chromosomeNames.push(currentChr),self.sequences[currentChr]=currentSeq,self.chromosomes[currentChr]=new igv.Chromosome(currentChr,order++,currentSeq.length)),currentChr=nextLine.substr(1).split("\\s+")[0],currentSeq=""):currentSeq+=nextLine)}var self=this;return igv.xhr.load(self.file,igv.buildOptions(self.config)).then(parseFasta)},igv.FastaSequence.prototype.readSequence=function(chr,qstart,qend){var self=this;return new Promise(function(fulfill,reject){self.getIndex().then(function(){var idxEntry=self.index[chr];if(idxEntry){var start=Math.max(0,qstart),end=Math.min(idxEntry.size,qend),bytesPerLine=idxEntry.bytesPerLine,basesPerLine=idxEntry.basesPerLine,position=idxEntry.position,nEndBytes=bytesPerLine-basesPerLine,startLine=Math.floor(start/basesPerLine),endLine=Math.floor(end/basesPerLine),base0=startLine*basesPerLine,offset=start-base0,startByte=position+startLine*bytesPerLine+offset,base1=endLine*basesPerLine,offset1=end-base1,endByte=position+endLine*bytesPerLine+offset1-1,byteCount=endByte-startByte+1;byteCount<=0&&fulfill(null),igv.xhr.load(self.file,igv.buildOptions(self.config,{range:{start:startByte,size:byteCount}})).then(function(allBytes){var nBases,seqBytes="",srcPos=0,desPos=0,allBytesLength=allBytes.length;for(offset>0&&(nBases=Math.min(end-start,basesPerLine-offset),seqBytes+=allBytes.substr(srcPos,nBases),srcPos+=nBases+nEndBytes,desPos+=nBases);srcPos<allBytesLength;)nBases=Math.min(basesPerLine,allBytesLength-srcPos),seqBytes+=allBytes.substr(srcPos,nBases),srcPos+=nBases+nEndBytes,desPos+=nBases;fulfill(seqBytes)}).catch(reject)}else console.log("No index entry for chr: "+chr),self.interval=new igv.GenomicInterval(chr,qstart,qend,null),fulfill(null)}).catch(reject)})},igv}(igv||{}),igv=function(igv){return igv.AneuFeatureSource=function(config,thefilename){function getPath(urlorfile){var last,path;return last=urlorfile.lastIndexOf("/"),path=urlorfile.substring(0,last+1)}function getParser(format){return new igv.FeatureParser(format)}this.config=config||{},igv.isFilePath(this.config.url)?this.filename=getPath(this.config.url.name)+thefilename:(this.config.url=getPath(this.config.url)+thefilename,this.filename=thefilename,this.headURL=this.config.headURL||thefilename),this.parser=getParser("aneu")},igv.AneuFeatureSource.prototype.getFeatures=function(chr,bpStart,bpEnd,success){var self=this,range=new igv.GenomicInterval(chr,bpStart,bpEnd),featureCache=this.featureCache;if(featureCache&&(void 0===featureCache.range||featureCache.range.containsRange(range))){var features=this.featureCache.queryFeatures(chr,bpStart,bpEnd);success(features)}else this.loadFeatures(function(featureList){self.featureCache=new igv.FeatureCache(featureList);var features=self.featureCache.queryFeatures(chr,bpStart,bpEnd);success(features)},range)},igv.AneuFeatureSource.prototype.getFeatureCache=function(success){var self=this;this.featureCache?success(this.featureCache):this.loadFeatures(function(featureList){self.featureCache=new igv.FeatureCache(featureList),success(self.featureCache)})},igv.AneuFeatureSource.prototype.loadFeatures=function(continuation,range){var options,success,features,self=this;options=igv.buildOptions(self.config,{tokens:self.config.tokensc}),success=function(data){self.header=self.parser.parseHeader(data),features=self.parser.parseFeatures(data),continuation(features)},igv.xhr.loadString(self.config.url,options).then(success)},igv}(igv||{}),igv=function(igv){function loadJson(){var self=this;return new Promise(function(fulfill,reject){var afterJsonLoaded,afterload;self.featureSourceRed?fulfill():(afterJsonLoaded=function(json){json=JSON.parse(json),log("Got json: "+json+", diff :"+json.diff),self.featureSource=new igv.AneuFeatureSource(self.config,json.diff),self.featureSourceRed=new igv.AneuFeatureSource(self.config,json.redline),fulfill()},afterload=igv.buildOptions(self.config,{tokens:self.config.tokens}),igv.xhr.loadString(self.config.url,afterload).then(afterJsonLoaded))})}var debug=!1,log=function(msg){if(debug){var d=new Date,time=d.getHours()+":"+d.getMinutes()+":"+d.getSeconds();"undefined"!=typeof copy&&copy(msg),"undefined"!=typeof console&&console.log("AneuTrack: "+time+" "+msg)}},sortDirection="ASC";return igv.AneuTrack=function(config){igv.configTrack(this,config),this.maxHeight=config.maxHeight-2||500,this.sampleSquishHeight=config.sampleSquishHeight||20,this.sampleExpandHeight=config.sampleExpandHeight||125,this.sampleHeight=this.sampleExpandHeight,this.highColor=config.highColor||"rgb(30,30,255)",this.lowColor=config.lowColor||"rgb(220,0,0)",this.midColor=config.midColor||"rgb(150,150,150)",this.posColorScale=config.posColorScale||new igv.GradientColorScale({low:.1,lowR:255,lowG:255,lowB:255,high:1.5,highR:255,highG:0,highB:0}),this.negColorScale=config.negColorScale||new igv.GradientColorScale({low:-1.5,lowR:0,lowG:0,lowB:255,high:-.1,highR:255,highG:255,highB:255}),this.sampleCount=0,this.samples={},this.sampleNames=[],log("AneuTrack: config: "+JSON.stringify(config)),this.config=config},igv.AneuTrack.prototype.getSummary=function(chr,bpStart,bpEnd,continuation){filtersummary=function(redlinedata){var i,len,summarydata=[];for(i=0,len=redlinedata.length;i<len;i++){var feature=redlinedata[i];Math.abs(feature.score-2)>.5&&feature.end-feature.start>5e6&&summarydata.push(feature)}continuation(summarydata)},this.featureSourceRed?this.featureSourceRed.getFeatures(chr,bpStart,bpEnd,filtersummary):(log("Aneu track has no summary data yet"),continuation(null))},igv.AneuTrack.prototype.loadSummary=function(chr,bpStart,bpEnd,continuation){var afterload,self=this;if(!this.featureSourceRed){var afterJsonLoaded=function(json){json&&(json=JSON.parse(json),self.featureSourceRed=new igv.AneuFeatureSource(config,json.redline),self.getSummary(chr,bpStart,bpEnd,continuation))};return afterload=igv.buildOptions(self.config,{tokens:self.config.tokens,success:afterJsonLoaded}),igv.xhr.loadString(self.config.url,afterload),null}this.featureSourceRed.getFeatures(chr,bpStart,bpEnd,continuation)},igv.AneuTrack.prototype.getFeatures=function(chr,bpStart,bpEnd){var self=this;return new Promise(function(fulfill,reject){loadJson.call(self).then(function(){var loadsecondfile=function(redlinedata){self.redlinedata=redlinedata,self.featureSource.getFeatures(chr,bpStart,bpEnd,fulfill)};self.featureSourceRed.getFeatures(chr,bpStart,bpEnd,loadsecondfile)})})},igv.AneuTrack.prototype.getColor=function(value){var color,expected=2;return color=value<expected?this.lowColor:value>expected?this.highColor:this.midColor},igv.AneuTrack.prototype.paintAxis=function(ctx,pixelWidth,pixelHeight){function computeH(min,max,value,maxpixels){return maxpixels-Math.round((value-min)/max*maxpixels)}var track=this,font=((track.maxLogP-track.minLogP)/pixelHeight,{font:"normal 10px Arial",textAlign:"right",strokeStyle:"black"});igv.graphics.fillRect(ctx,0,0,pixelWidth,pixelHeight,{fillStyle:"rgb(255, 255, 255)"});var max=track.max;max||(max=8);var min=0,x=49;igv.graphics.strokeLine(ctx,x,computeH(min,max,0,track.maxheight),x,computeH(min,max,max,track.maxheight),font),x-=5;for(var p=0;p<=max;p+=1){var h=computeH(min,max,p,track.maxheight);igv.graphics.strokeLine(ctx,x,h,x+5,h,font),p>0&&p<max&&igv.graphics.fillText(ctx,p,x-4,h+3,font)}font.textAlign="center",igv.graphics.fillText(ctx,"ploidy",x-15,pixelHeight/2,font,{rotate:{angle:-90}})},igv.AneuTrack.prototype.draw=function(options){function computeH(min,max,value,maxpixels){return maxpixels-Math.round((value-min)/max*maxpixels)}function checkForLog(featureList){var i;if(void 0===myself.isLog)for(myself.isLog=!1,i=0;i<featureList.length;i++)if(featureList[i].value<0)return void(myself.isLog=!0)}var ctx,bpPerPixel,bpStart,pixelWidth,pixelHeight,bpEnd,segment,len,sample,i,y,color,value,px,px1,pw,xScale,myself=this;ctx=options.context,pixelWidth=options.pixelWidth,pixelHeight=options.pixelHeight;var max=4,min=0,PLOIDYMAX=10;igv.graphics.fillRect(ctx,0,0,pixelWidth,pixelHeight,{fillStyle:"rgb(255, 255, 255)"});var track=this;window.track=track;var computeMinMax=function(featureList){for(i=0,len=featureList.length;i<len;i++){sample=featureList[i].sample;var value=featureList[i].value;value>max&&(max=value),value<min&&(min=value)}max>PLOIDYMAX&&(max=PLOIDYMAX),min=Math.max(min,0),track.max=max},drawFeatureList=function(ctx,featureList,debug){for(bpPerPixel=options.bpPerPixel,bpStart=options.bpStart,bpEnd=bpStart+pixelWidth*bpPerPixel+1,xScale=bpPerPixel,i=0,len=featureList.length;i<len;i++)sample=featureList[i].sample,sample&&this.samples&&this.samples.hasOwnProperty(sample)&&(this.samples[sample]=myself.sampleCount,this.sampleNames.push(sample),this.sampleCount++);checkForLog(featureList);var expected=2;myself.isLog&&(min=0,expected=0);var maxheight=myself.height-4;myself.maxheight=maxheight;var len=featureList.length;for(i=0;i<len;i++)if(segment=featureList[i],!(segment.end<bpStart)){if(segment.start>bpEnd)break;if(segment.sample?(y=myself.samples[segment.sample]*myself.sampleHeight,log("Got sample y="+y)):y=0,value=segment.score,color=myself.midColor,myself.isLog?(value=Math.log2(value/2),value<expected-.1?color=myself.negColorScale.getColor(value):value>expected+.1&&(color=myself.posColorScale.getColor(value))):value<expected-.2?color=myself.lowColor:value>expected+.2&&(color=myself.highColor),px=Math.round((segment.start-bpStart)/xScale),px1=Math.round((segment.end-bpStart)/xScale),pw=Math.max(2,px1-px),value<=max){var h=computeH(min,max,value,maxheight);1==debug&&log("       Got value "+value+", h="+h+", y+h="+(y+h)+", px="+px+", px1="+px1+", pw="+pw+", color="+color+", maxh="+maxheight),igv.graphics.fillRect(ctx,px,y+h,pw,2,{fillStyle:color})}}},maxheight=myself.height-4,font={font:"normal 10px Arial",textAlign:"right",strokeStyle:"rgb(150,150,150)",fillStyle:"rgb(150,150,150)"};if(options.features&&computeMinMax(options.features),this.redlinedata&&computeMinMax(this.redlinedata),min<2&&2<max){var mid=computeH(min,max,2,maxheight);console.log("drawing dashed line and solid line at "+mid+" to "+pixelWidth),igv.graphics.dashedLine(ctx,20,mid,pixelWidth,mid,4,font);var zero=computeH(min,max,0,maxheight);igv.graphics.strokeLine(ctx,20,zero,pixelWidth,zero,font)}else log("NOT drawing line at 2");options.features?drawFeatureList(ctx,options.features,!1):console.log("No diff feature list. options="+JSON.stringify(options)),this.redlinedata?drawFeatureList(ctx,this.redlinedata,!1):console.log("No redline feature list")},igv.AneuTrack.prototype.computePixelHeight=function(features){var i,len,sample;for(i=0,len=features.length;i<len;i++)sample=features[i].sample,this.samples&&!this.samples.hasOwnProperty(sample)&&(this.samples[sample]=this.sampleCount,this.sampleNames.push(sample),this.sampleCount++);this.sampleCount=Math.max(1,this.sampleCount);var h=Math.max(30,this.sampleCount*this.sampleHeight);
+return this.height=h,h},igv.AneuTrack.prototype.sortSamples=function(chr,bpStart,bpEnd,direction,callback){var segment,min,max,f,i,s,sampleNames,self=this,len=bpEnd-bpStart,scores={};this.featureSource.getFeatures(chr,bpStart,bpEnd,function(featureList){for(i=0,len=featureList.length;i<len;i++)if(segment=featureList[i],!(segment.end<bpStart)){if(segment.start>bpEnd)break;min=Math.max(bpStart,segment.start),max=Math.min(bpEnd,segment.end),f=(max-min)/len,s=scores[segment.sample],s||(s=0),scores[segment.sample]=s+f*segment.value}for(sampleNames=Object.keys(self.samples),sampleNames.sort(function(a,b){var s1=scores[a],s2=scores[b];return s1||(s1=Number.MAX_VALUE),s2||(s2=Number.MAX_VALUE),s1==s2?0:s1>s2?direction:direction*-1}),i=0;i<sampleNames.length;i++)self.samples[sampleNames[i]]=i;self.sampleNames=sampleNames,callback()})},igv.AneuTrack.prototype.altClick=function(genomicLocation,referenceFrame,event){var bpWidth=referenceFrame.toBP(2.5);this.sortSamples(referenceFrame.chr,genomicLocation-bpWidth,genomicLocation+bpWidth,sortDirection),sortDirection="ASC"===sortDirection?"DESC":"ASC"},igv.AneuTrack.prototype.popupDataWithConfiguration=function(config){return this.popupData(config.genomicLocation,config.x,config.y,config.viewport.genomicState.referenceFrame)},igv.AneuTrack.prototype.popupData=function(genomicLocation,xOffset,yOffset,referenceFrame){var sampleName,items,row=Math.floor(yOffset/this.sampleHeight);if(log("popupData for row "+row+", sampleNames="+JSON.stringify(this.sampleNames)),row<this.sampleNames.length){if(sampleName=this.sampleNames[row],items=sampleName?[{name:"Sample",value:sampleName}]:[],this.featureSource.featureCache){var chr=referenceFrame.chrName,featureList=this.featureSource.featureCache.queryFeatures(chr,genomicLocation,genomicLocation);featureList.forEach(function(f){f.sample===sampleName&&(items.push({name:"Value",value:f.value}),items.push({name:"Start",value:f.start}),items.push({name:"End",value:f.end}))})}if(this.featureSourceRed.featureCache){var chr=referenceFrame.chrName,featureList=this.featureSourceRed.featureCache.queryFeatures(chr,genomicLocation,genomicLocation);featureList.forEach(function(f){f.sample===sampleName&&(items.push({name:"Value",value:f.value}),items.push({name:"Start",value:f.start}),items.push({name:"End",value:f.end}))})}return items}return null},igv}(igv||{}),igv=function(igv){return igv.CustomServiceReader=function(config){this.config=config,this.supportsWholeGenome=!0},igv.CustomServiceReader.prototype.readFeatures=function(chr,start,end){var self=this,url=self.config.url,body=self.config.body;return"all"!==chr.toLowerCase()&&(url=url.replace("$CHR",chr).replace("$START",start).replace("$END",end),void 0!==body&&(self.config.body=self.config.body.replace("$CHR",chr).replace("$START",start).replace("$END",end))),igv.xhr.load(url,self.config).then(function(data){if(data){var results="function"==typeof self.config.parser?self.config.parser(data):data;return results}return null})},igv}(igv||{}),igv=function(igv){function buildTreeMap(featureList){var i,chr,featureCache={},chromosomes=[],treeMap={},genome=igv.browser?igv.browser.genome:null;if(featureList)for(featureList.forEach(function(feature){var geneList,chr=feature.chr;genome&&(chr=genome.getChromosomeName(chr)),geneList=featureCache[chr],geneList||(chromosomes.push(chr),geneList=[],featureCache[chr]=geneList),geneList.push(feature)}),i=0;i<chromosomes.length;i++)chr=chromosomes[i],treeMap[chr]=buildIntervalTree(featureCache[chr]);return treeMap}function buildIntervalTree(featureList){var i,e,iStart,iEnd,tree,chunkSize,len,subArray;for(tree=new igv.IntervalTree,len=featureList.length,chunkSize=Math.max(10,Math.round(len/100)),featureList.sort(function(f1,f2){return f1.start===f2.start?0:f1.start>f2.start?1:-1}),i=0;i<len;i+=chunkSize)e=Math.min(len,i+chunkSize),subArray=featureList.slice(i,e),iStart=subArray[0].start,iEnd=iStart,subArray.forEach(function(feature){iEnd=Math.max(iEnd,feature.end)}),tree.insert(iStart,iEnd,subArray);return tree}return igv.FeatureCache=function(featureList,range){this.treeMap=buildTreeMap(featureList),this.range=range},igv.FeatureCache.prototype.queryFeatures=function(chr,start,end){var featureList,intervalFeatures,feature,len,i,tree,intervals;return(tree=this.treeMap[chr])?(intervals=tree.findOverlapping(start,end),0==intervals.length?[]:(featureList=[],intervals.forEach(function(interval){for(intervalFeatures=interval.value,len=intervalFeatures.length,i=0;i<len&&(feature=intervalFeatures[i],!(feature.start>end));i++)feature.end>=start&&featureList.push(feature)}),featureList)):[]},igv.FeatureCache.prototype.allFeatures=function(){var allFeatures=[],treeMap=this.treeMap;if(treeMap)for(var key in treeMap)if(treeMap.hasOwnProperty(key)){var tree=treeMap[key];tree.mapIntervals(function(interval){allFeatures=allFeatures.concat(interval.value)})}return allFeatures},igv}(igv||{}),igv=function(igv){const MAX_GZIP_BLOCK_SIZE=65536;return igv.FeatureFileReader=function(config){var uriParts;this.config=config||{},igv.isFilePath(this.config.url)?this.filename=this.config.url.name:(uriParts=igv.parseUri(this.config.url),this.filename=uriParts.file,this.path=uriParts.path),this.format=this.config.format,this.parser=this.getParser(this.format,this.config.decode),this.supportsWholeGenome="seg"===this.format},igv.FeatureFileReader.prototype.readFeatures=function(chr,start,end){return this.index?this.loadFeaturesWithIndex(chr,start,end):this.loadFeaturesNoIndex()},igv.FeatureFileReader.prototype.readHeader=function(){var self=this;return self.header?Promise.resolve(self.header):self.getIndex().then(function(index){var options;return index?(options=igv.buildOptions(self.config,{bgz:index.tabix,range:{start:0,size:65e3}}),igv.xhr.loadString(self.config.url,options).then(function(data){return self.header=self.parser.parseHeader(data),self.header})):self.loadFeaturesNoIndex().then(function(features){var header=self.header||{};return header.features=features,header})})},igv.FeatureFileReader.prototype.getParser=function(format,decode){switch(format){case"vcf":return new igv.VcfParser;case"seg":return new igv.SegParser;default:return new igv.FeatureParser(format,decode,this.config)}},igv.FeatureFileReader.prototype.isIndexable=function(){var hasIndexURL,isValidType,isIndexed;return hasIndexURL=void 0!==this.config.indexURL,isValidType="wig"!==this.format&&"seg"!==this.format,isIndexed=!1!==this.config.indexed,isIndexed&&(hasIndexURL||isValidType)},igv.FeatureFileReader.prototype.loadIndex=function(){var idxFile=this.config.indexURL;return this.filename.endsWith(".gz")?(idxFile||(idxFile=this.config.url+".tbi"),igv.loadBamIndex(idxFile,this.config,!0)):(idxFile||(idxFile=this.config.url+".idx"),igv.loadTribbleIndex(idxFile,this.config))},igv.FeatureFileReader.prototype.loadFeaturesNoIndex=function(){var self=this,options=igv.buildOptions(self.config);return igv.xhr.loadString(self.config.url,options).then(function(data){return self.header=self.parser.parseHeader(data),self.header instanceof String&&self.header.startsWith("##gff-version 3")&&(self.format="gff3"),self.parser.parseFeatures(data)})},igv.FeatureFileReader.prototype.loadFeaturesWithIndex=function(chr,start,end){var blocks,self=this,tabix=self.index&&self.index.tabix,refId=tabix?self.index.sequenceIndexMap[chr]:chr,promises=[];return blocks=self.index.blocksForRange(refId,start,end),blocks&&0!==blocks.length?(blocks.forEach(function(block){promises.push(new Promise(function(fullfill,reject){var endPos,options,success,startPos=block.minv.block,startOffset=block.minv.offset;endPos=endPos=block.maxv.block+MAX_GZIP_BLOCK_SIZE,options=igv.buildOptions(self.config,{range:{start:startPos,size:endPos-startPos+1}}),success=function(data){var inflated,slicedData,slicedFeatures,filteredFeatures,f,i;for(inflated=self.index.tabix?new Uint8Array(igv.unbgzf(data)):data,slicedData=startOffset?inflated.slice(startOffset):inflated,slicedFeatures=self.parser.parseFeatures(slicedData),filteredFeatures=[],i=0;i<slicedFeatures.length&&(f=slicedFeatures[i],!(f.start>end));i++)f.end>=start&&f.start<=end&&filteredFeatures.push(f);fullfill(filteredFeatures)},self.index.tabix?igv.xhr.loadArrayBuffer(self.config.url,options).then(success).catch(reject):igv.xhr.loadString(self.config.url,options).then(success).catch(reject)}))}),Promise.all(promises).then(function(featureArrays){var i,allFeatures;if(1===featureArrays.length)allFeatures=featureArrays[0];else{for(allFeatures=featureArrays[0],i=1;i<featureArrays.length;i++)allFeatures=allFeatures.concat(featureArrays[i]);allFeatures.sort(function(a,b){return a.start-b.start})}return allFeatures})):Promise.resolve([])},igv.FeatureFileReader.prototype.getIndex=function(){var self=this;return void 0!==self.index||self.config.indexed===!1?Promise.resolve(self.index):self.isIndexable()?self.loadIndex().then(function(indexOrUndefined){return indexOrUndefined?(self.index=indexOrUndefined,self.indexed=!0):self.indexed=!1,self.index}).catch(function(error){if(self.indexed=!1,"404"!==error.message||void 0!==self.config.indexURL)throw error}):(self.indexed=!1,Promise.resolve(void 0))},igv}(igv||{}),igv=function(igv){function parseFixedStep(line){var tokens=line.split(/\s+/),cc=tokens[1].split("=")[1],ss=parseInt(tokens[2].split("=")[1],10),step=parseInt(tokens[3].split("=")[1],10),span=tokens.length>4?parseInt(tokens[4].split("=")[1],10):1;return{format:"fixedStep",chrom:cc,start:ss,step:step,span:span,index:0}}function parseVariableStep(line){var tokens=line.split(/\s+/),cc=tokens[1].split("=")[1],span=tokens.length>2?parseInt(tokens[2].split("=")[1],10):1;return{format:"variableStep",chrom:cc,span:span}}function parseTrackLine(line){var i,tk,curr,properties={},tokens=line.split(/(?:")([^"]+)(?:")|([^\s"]+)(?=\s+|$)/g),tmp=[];for(i=1;i<tokens.length;i++)tokens[i]&&0!==tokens[i].trim().length&&(tk=tokens[i].trim(),tk.endsWith("=")>0?curr=tk:curr?(tmp.push(curr+tk),curr=void 0):tmp.push(tk));return tmp.forEach(function(str){if(str){var kv=str.split("=",2);2==kv.length&&(properties[kv[0]]=kv[1])}}),properties}function decodeBed(tokens,ignore){var chr,start,end,id,name,tmp,idName,exonCount,exonSizes,exonStarts,exons,exon,feature,eStart,eEnd;if(!(tokens.length<3)){if(chr=tokens[0],start=parseInt(tokens[1]),end=tokens.length>2?parseInt(tokens[2]):start+1,feature={chr:chr,start:start,end:end,score:1e3},tokens.length>3){tmp=tokens[3].replace(/"/g,""),idName=tmp.split(";");for(var i=0;i<idName.length;i++){var kv=idName[i].split("=");"gene_id"==kv[0]&&(id=kv[1]),"gene_name"==kv[0]&&(name=kv[1])}feature.id=id?id:tmp,feature.name=name?name:tmp}if(tokens.length>4&&(feature.score=parseFloat(tokens[4])),tokens.length>5&&(feature.strand=tokens[5]),tokens.length>6&&(feature.cdStart=parseInt(tokens[6])),tokens.length>7&&(feature.cdEnd=parseInt(tokens[7])),tokens.length>8&&"."!==tokens[8]&&"0"!==tokens[8]&&(feature.color=igv.Color.createColorString(tokens[8])),tokens.length>11){exonCount=parseInt(tokens[9]),exonSizes=tokens[10].split(","),exonStarts=tokens[11].split(","),exons=[];for(var i=0;i<exonCount;i++){eStart=start+parseInt(exonStarts[i]),eEnd=eStart+parseInt(exonSizes[i]);var exon={start:eStart,end:eEnd};(feature.cdStart>eEnd||feature.cdEnd<feature.cdStart)&&(exon.utr=!0),feature.cdStart>=eStart&&feature.cdStart<=eEnd&&(exon.cdStart=feature.cdStart),feature.cdEnd>=eStart&&feature.cdEnd<=eEnd&&(exon.cdEnd=feature.cdEnd),exons.push(exon)}feature.exons=exons}return feature.popupData=function(){var data=[];return feature.name&&data.push({name:"Name",value:feature.name}),"+"!==feature.strand&&"-"!==feature.strand||data.push({name:"Strand",value:feature.strand}),data},feature}}function decodeGenePred(tokens,ignore){var shift=void 0===this.shift?0:1;if(!(tokens.length<9+shift)){for(var feature={name:tokens[0+shift],chr:tokens[1+shift],strand:tokens[2+shift],start:parseInt(tokens[3+shift]),end:parseInt(tokens[4+shift]),cdStart:parseInt(tokens[5+shift]),cdEnd:parseInt(tokens[6+shift]),id:tokens[0+shift]},exonCount=parseInt(tokens[7+shift]),exonStarts=tokens[8+shift].split(","),exonEnds=tokens[9+shift].split(","),exons=[],i=0;i<exonCount;i++)exons.push({start:parseInt(exonStarts[i]),end:parseInt(exonEnds[i])});return feature.exons=exons,feature.popupData=function(){return[{name:"Name",value:feature.name}]},feature}}function decodeGenePredExt(tokens,ignore){var shift=void 0===this.shift?0:1;if(!(tokens.length<11+shift)){for(var feature={name:tokens[11+shift],chr:tokens[1+shift],strand:tokens[2+shift],start:parseInt(tokens[3+shift]),end:parseInt(tokens[4+shift]),cdStart:parseInt(tokens[5+shift]),cdEnd:parseInt(tokens[6+shift]),id:tokens[0+shift]},exonCount=parseInt(tokens[7+shift]),exonStarts=tokens[8+shift].split(","),exonEnds=tokens[9+shift].split(","),exons=[],i=0;i<exonCount;i++)exons.push({start:parseInt(exonStarts[i]),end:parseInt(exonEnds[i])});return feature.exons=exons,feature.popupData=function(){return[{name:"Name",value:feature.name}]},feature}}function decodeReflat(tokens,ignore){var shift=void 0===this.shift?0:1;if(!(tokens.length<10+shift)){for(var feature={name:tokens[0+shift],id:tokens[1+shift],chr:tokens[2+shift],strand:tokens[3+shift],start:parseInt(tokens[4+shift]),end:parseInt(tokens[5+shift]),cdStart:parseInt(tokens[6+shift]),cdEnd:parseInt(tokens[7+shift])},exonCount=parseInt(tokens[8+shift]),exonStarts=tokens[9+shift].split(","),exonEnds=tokens[10+shift].split(","),exons=[],i=0;i<exonCount;i++)exons.push({start:parseInt(exonStarts[i]),end:parseInt(exonEnds[i])});return feature.exons=exons,feature.popupData=function(){return[{name:"Name",value:feature.name}]},feature}}function decodePeak(tokens,ignore){var tokenCount,chr,start,end,strand,name,score,qValue,signal,pValue;return tokenCount=tokens.length,tokenCount<9?null:(chr=tokens[0],start=parseInt(tokens[1]),end=parseInt(tokens[2]),name=tokens[3],score=parseFloat(tokens[4]),strand=tokens[5].trim(),signal=parseFloat(tokens[6]),pValue=parseFloat(tokens[7]),qValue=parseFloat(tokens[8]),0===score&&(score=signal),{chr:chr,start:start,end:end,name:name,score:score,strand:strand,signal:signal,pValue:pValue,qValue:qValue})}function decodeBedGraph(tokens,ignore){var chr,start,end,value;return tokens.length<3?null:(chr=tokens[0],start=parseInt(tokens[1]),end=parseInt(tokens[2]),value=parseFloat(tokens[3]),{chr:chr,start:start,end:end,value:value})}function decodeWig(tokens,wig){var ss,ee,value;return"fixedStep"===wig.format?(ss=wig.index*wig.step+wig.start,ee=ss+wig.span,value=parseFloat(tokens[0]),++wig.index,isNaN(value)?null:{chr:wig.chrom,start:ss,end:ee,value:value}):"variableStep"===wig.format?tokens.length<2?null:(ss=parseInt(tokens[0],10),ee=ss+wig.span,value=parseFloat(tokens[1]),isNaN(value)?null:{chr:wig.chrom,start:ss,end:ee,value:value}):decodeBedGraph(tokens)}function decodeAneu(tokens,ignore){var chr,start,end,feature;return tokens.length<4?null:(chr=tokens[1],start=parseInt(tokens[2]),end=tokens.length>3?parseInt(tokens[3]):start+1,feature={chr:chr,start:start,end:end},tokens.length>4&&(feature.score=parseFloat(tokens[4]),feature.value=feature.score),feature.popupData=function(){return[{name:"Name",value:feature.name}]},feature)}function decodeFusionJuncSpan(tokens,ignore){var chr=tokens[0],fusion_name=tokens[1],junction_left=parseInt(tokens[2]),junction_right=parseInt(tokens[3]),num_junction_reads=parseInt(tokens[4]),num_spanning_frags=parseInt(tokens[5]),spanning_frag_coords_text=tokens[6],feature={chr:chr,name:fusion_name,junction_left:junction_left,junction_right:junction_right,num_junction_reads:num_junction_reads,num_spanning_frags:num_spanning_frags,spanning_frag_coords:[],start:-1,end:-1},min_coord=junction_left,max_coord=junction_right;if(num_spanning_frags>0)for(var coord_pairs=spanning_frag_coords_text.split(","),i=0;i<coord_pairs.length;i++){var split_coords=coord_pairs[i].split("-"),span_left=split_coords[0],span_right=split_coords[1];span_left<min_coord&&(min_coord=span_left),span_right>max_coord&&(max_coord=span_right),feature.spanning_frag_coords.push({left:span_left,right:span_right})}return feature.start=min_coord,feature.end=max_coord,feature.popupData=function(){return[{name:"Name",value:feature.name}]},feature}function decodeGtexGWAS(tokens,ignore){var tokenCount,chr,start,end,pValue;return tokenCount=tokens.length,tokenCount<8?null:(chr=tokens[0],start=parseInt(tokens[1])-1,end=parseInt(tokens[3].split(":")[1]),pValue=parseFloat(tokens[5]),{chr:chr,start:start,end:end,pvalue:pValue})}function decodeGFF(tokens,ignore){var tokenCount,chr,start,end,strand,type,score,phase,attributeString,id,parent,color,name,i,format=this.format;if(tokenCount=tokens.length,tokenCount<9)return null;chr=tokens[0],type=tokens[2],start=parseInt(tokens[3])-1,end=parseInt(tokens[4]),score="."===tokens[5]?0:parseFloat(tokens[5]),strand=tokens[6],phase="."===tokens[7]?0:parseInt(tokens[7]),attributeString=tokens[8];var delim="gff3"===format?"=":/\s+/,attributes={};if(attributeString.split(";").forEach(function(kv){var key,value,t=kv.trim().split(delim,2);2==t.length&&(key=t[0].trim(),value=t[1].trim(),value.startsWith('"')&&value.endsWith('"')&&(value=value.substr(1,value.length-2)),"ID"===t[0]?id=t[1]:"Parent"===t[0]?parent=t[1]:"color"===t[0].toLowerCase()?color=igv.Color.createColorString(t[1]):"transcript_id"===t[0]&&(id=t[1]),attributes[key]=value)}),this.nameField)name=attributes[this.nameField];else for(i=0;i<gffNameFields.length;i++)if(attributes.hasOwnProperty(gffNameFields[i])){this.nameField=gffNameFields[i],name=attributes[this.nameField];break}return{id:id,parent:parent,name:name,type:type,chr:chr,start:start,end:end,score:score,strand:strand,color:color,attributeString:attributeString,popupData:function(){var key,value,kvs=this.attributeString.split(";"),pd=[];return kvs.forEach(function(kv){var t=kv.trim().split(delim,2);2===t.length&&void 0!==t[1]&&(key=t[0].trim(),value=t[1].trim(),value.startsWith('"')&&value.endsWith('"')&&(value=value.substr(1,value.length-2)),pd.push({name:key,value:value}))}),pd}}}function decodeCustom(tokens,ignore){var feature,chr,start,end,format=this.format,coords=format.coords||0;return tokens.length<3?null:(chr=tokens[format.chr],start=parseInt(tokens[format.start])-coords,end=void 0!==format.end?parseInt(tokens[format.end]):start+1,feature={chr:chr,start:start,end:end},format.fields&&format.fields.forEach(function(field,index){index!=format.chr&&index!=format.start&&index!=format.end&&(feature[field]=tokens[index])}),feature)}function getDataWrapper(data){return"string"==typeof data||data instanceof String?new StringDataWrapper(data):new ByteArrayDataWrapper(data)}var maxFeatureCount=Number.MAX_VALUE,gffNameFields=["Name","gene_name","gene","gene_id","alias","locus"];igv.FeatureParser=function(format,decode,config){var customFormat;switch(void 0!==format&&(this.format=format.toLowerCase()),this.nameField=config?config.nameField:void 0,this.skipRows=0,decode&&(this.decode=decode),this.format){case"narrowpeak":case"broadpeak":case"peaks":this.decode=decodePeak,this.delimiter=/\s+/;break;case"bedgraph":this.decode=decodeBedGraph,this.delimiter=/\s+/;break;case"wig":this.decode=decodeWig,this.delimiter=/\s+/;break;case"gff3":case"gff":case"gtf":this.decode=decodeGFF,this.delimiter="\t";break;case"aneu":this.decode=decodeAneu,this.delimiter="\t";break;case"fusionjuncspan":this.decode=decodeFusionJuncSpan,this.delimiter=/\s+/;break;case"gtexgwas":this.skipRows=1,this.decode=decodeGtexGWAS,this.delimiter="\t";break;case"refflat":this.decode=decodeReflat,this.delimiter=/\s+/;break;case"genepred":this.decode=decodeGenePred,this.delimiter=/\s+/;break;case"genepredext":this.decode=decodeGenePredExt,this.delimiter=/\s+/;break;case"refgene":this.decode=decodeGenePredExt,this.delimiter=/\s+/,this.shift=1;break;case"bed":this.decode=decodeBed,this.delimiter=config.delimiter||/\s+/;default:customFormat=igv.getFormat(format),void 0!==customFormat?(this.decode=decodeCustom,this.format=customFormat,this.delimiter=customFormat.delimiter||"\t"):(this.decode=decodeBed,this.delimiter=/\s+/)}},igv.FeatureParser.prototype.parseHeader=function(data){var line,header,dataWrapper;for(dataWrapper=getDataWrapper(data);(line=dataWrapper.nextLine())&&(line.startsWith("track")||line.startsWith("#")||line.startsWith("browser"));)line.startsWith("track")?header=parseTrackLine(line):line.startsWith("##gff-version 3")&&(this.format="gff3",header||(header={}),header.format="gff3");return header},igv.FeatureParser.prototype.parseFeatures=function(data){if(!data)return null;var dataWrapper,wig,feature,tokens,line,i,j,allFeatures=[],cnt=0,decode=this.decode,format=this.format,delimiter=this.delimiter||"\t";for(dataWrapper=getDataWrapper(data),i=0;line=dataWrapper.nextLine();)i<this.skipRows||line.startsWith("track")||line.startsWith("#")||line.startsWith("browser")||("wig"===format&&line.startsWith("fixedStep")?wig=parseFixedStep(line):"wig"===format&&line.startsWith("variableStep")?wig=parseVariableStep(line):(tokens=line.split(delimiter),tokens.length<1||(feature=decode.call(this,tokens,wig),feature&&(allFeatures.length<maxFeatureCount?allFeatures.push(feature):(j=Math.floor(Math.random()*cnt),j<maxFeatureCount&&(allFeatures[j]=feature)),cnt++),i++)));return allFeatures};var StringDataWrapper=function(string){this.data=string,this.ptr=0};StringDataWrapper.prototype.nextLine=function(){var start=this.ptr,idx=this.data.indexOf("\n",start);return this.ptr=idx+1,idx<0||idx===start?void 0:this.data.substring(start,idx)};var ByteArrayDataWrapper=function(array){this.data=array,this.length=this.data.length,this.ptr=0};return ByteArrayDataWrapper.prototype.nextLine=function(){var c,result;if(result="",!(this.ptr>=this.length)){for(var i=this.ptr;i<this.length;i++)if(c=String.fromCharCode(this.data[i]),"\r"!==c){if("\n"===c)break;result+=c}return this.ptr=i+1,result}},igv}(igv||{}),igv=function(igv){function addFeaturesToDB(featureList){featureList.forEach(function(feature){feature.name&&(igv.browser.featureDB[feature.name.toUpperCase()]=feature)})}function packFeatures(features,maxRows){function pack(featureList,maxRows){var rows=[];featureList.sort(function(a,b){return a.start-b.start}),rows.push(-1e3),featureList.forEach(function(feature){var r,len=Math.min(rows.length,maxRows),start=feature.start;for(r=0;r<len;r++)if(start>=rows[r])return feature.row=r,void(rows[r]=feature.end);feature.row=r,rows[r]=feature.end})}if(null!=features&&0!==features.length){var chrFeatureMap={},chrs=[];features.forEach(function(feature){var chr=feature.chr,flist=chrFeatureMap[chr];flist||(flist=[],chrFeatureMap[chr]=flist,chrs.push(chr)),flist.push(feature)}),chrs.forEach(function(chr){pack(chrFeatureMap[chr],maxRows)})}}function getWGFeatures(features){var wgFeatures,wgChromosomeNames,genome;return genome=igv.browser.genome,wgChromosomeNames=new Set(genome.wgChromosomeNames),wgFeatures=[],features.forEach(function(f){var wg,queryChr;queryChr=genome.getChromosomeName(f.chr),wgChromosomeNames.has(queryChr)&&(wg=Object.assign({},f),wg.start=igv.browser.genome.getGenomeCoordinate(f.chr,f.start),wg.end=igv.browser.genome.getGenomeCoordinate(f.chr,f.end),wgFeatures.push(wg))}),wgFeatures}return igv.FeatureSource=function(config){this.config=config||{},this.sourceType=void 0===config.sourceType?"file":config.sourceType,"ga4gh"===config.sourceType?this.reader=new igv.Ga4ghVariantReader(config):"immvar"===config.sourceType?this.reader=new igv.ImmVarReader(config):"eqtl"===config.type?"gtex-ws"===config.sourceType?this.reader=new igv.GtexReader(config):this.reader=new igv.GtexFileReader(config):"bigquery"===config.sourceType?this.reader=new igv.BigQueryFeatureReader(config):"ucscservice"===config.sourceType?this.reader=new igv.UCSCServiceReader(config.source):"custom"===config.sourceType||void 0!==config.source?this.reader=new igv.CustomServiceReader(config.source):this.reader=new igv.FeatureFileReader(config),this.visibilityWindow=config.visibilityWindow},igv.FeatureSource.prototype.getFileHeader=function(){var self=this,maxRows=this.config.maxRows||500;return self.header?Promise.resolve(self.header):"function"==typeof self.reader.readHeader?self.reader.readHeader().then(function(header){if(header){self.header=header;var features=header.features;features&&("gtf"!==self.config.format&&"gff3"!==self.config.format&&"gff"!==self.config.format||(features=new igv.GFFHelper(self.config.format).combineFeatures(features)),packFeatures(features,maxRows),self.featureCache=new igv.FeatureCache(features),self.config.searchable&&addFeaturesToDB(features))}return header&&header.format&&(self.config.format=header.format),header}):(self.header={},Promise.resolve(self.header))},igv.FeatureSource.prototype.getFeatures=function(chr,bpStart,bpEnd,bpPerPixel){var genomicInterval,featureCache,maxRows,str,self=this;if(genomicInterval=new igv.GenomicInterval(chr,bpStart,bpEnd),featureCache=self.featureCache,maxRows=self.config.maxRows||500,str=chr.toLowerCase(),"all"===str)return self.reader.supportsWholeGenome?featureCache&&void 0===featureCache.range?Promise.resolve(getWGFeatures(featureCache.allFeatures())):self.reader.readFeatures(chr).then(function(featureList){return featureList&&"function"==typeof featureList.forEach&&("gtf"!==self.config.format&&"gff3"!==self.config.format&&"gff"!==self.config.format||(featureList=new igv.GFFHelper(self.config.format).combineFeatures(featureList)),self.featureCache=new igv.FeatureCache(featureList),packFeatures(featureList,maxRows)),getWGFeatures(self.featureCache.allFeatures())}):Promise.resolve(null);if(featureCache&&(void 0===featureCache.range||featureCache.range.containsRange(genomicInterval)))return Promise.resolve(self.featureCache.queryFeatures(chr,bpStart,bpEnd));if("file"===self.sourceType&&(void 0===self.visibilityWindow||self.visibilityWindow<=0)){genomicInterval.start=0;var chromosome=igv.browser?igv.browser.genome.getChromosome(chr):void 0;genomicInterval.end=void 0===chromosome?Number.MAX_VALUE:chromosome.bpLength}return self.reader.readFeatures(chr,genomicInterval.start,genomicInterval.end).then(function(featureList){if(featureList&&"function"==typeof featureList.forEach){var isQueryable=self.reader.indexed||"file"!==self.config.sourceType;return"gtf"!==self.config.format&&"gff3"!==self.config.format&&"gff"!==self.config.format||(featureList=new igv.GFFHelper(self.config.format).combineFeatures(featureList)),self.featureCache=isQueryable?new igv.FeatureCache(featureList,genomicInterval):new igv.FeatureCache(featureList),packFeatures(featureList,maxRows),self.config.searchable&&addFeaturesToDB(featureList),self.featureCache.queryFeatures(chr,bpStart,bpEnd)}return null})},igv}(igv||{}),igv=function(igv){function extractPopupData(feature){var data=[];for(var property in feature)feature.hasOwnProperty(property)&&"chr"!==property&&"start"!==property&&"end"!==property&&"row"!==property&&igv.isStringOrNumber(feature[property])&&data.push({name:property,value:feature[property]});return data}function calculateFeatureCoordinates(feature,bpStart,xScale){var px=Math.round((feature.start-bpStart)/xScale),px1=Math.round((feature.end-bpStart)/xScale),pw=px1-px;return pw<3&&(pw=3,px-=1),{px:px,px1:px1,pw:pw}}function renderFeature(feature,bpStart,xScale,pixelHeight,ctx,options){var x,e,exonCount,cy,direction,exon,ePx,ePx1,ePxU,ePw,py2,h2,py,windowX,windowX1,coord=calculateFeatureCoordinates(feature,bpStart,xScale),h=this.featureHeight,step=this.arrowSpacing,color=this.color;if(this.config.colorBy){var colorByValue=feature[this.config.colorBy.field];colorByValue&&(color=this.config.colorBy.pallete[colorByValue])}else feature.color&&(color=feature.color);if(ctx.fillStyle=color,ctx.strokeStyle=color,"SQUISHED"===this.displayMode&&void 0!==feature.row?(h=this.featureHeight/2,py=this.expandedCallHeight*feature.row+2):py="EXPANDED"===this.displayMode&&void 0!==feature.row?this.squishedCallHeight*feature.row+5:5,cy=py+h/2,h2=h/2,py2=cy-h2/2,exonCount=feature.exons?feature.exons.length:0,0===exonCount)ctx.fillRect(coord.px,py,coord.pw,h);else{for(igv.graphics.strokeLine(ctx,coord.px+1,cy,coord.px1-1,cy),direction="+"===feature.strand?1:-1,x=coord.px+step/2;x<coord.px1;x+=step)igv.graphics.strokeLine(ctx,x-2*direction,cy-2,x,cy),igv.graphics.strokeLine(ctx,x-2*direction,cy+2,x,cy);for(e=0;e<exonCount;e++)if(exon=feature.exons[e],ePx=Math.round((exon.start-bpStart)/xScale),ePx1=Math.round((exon.end-bpStart)/xScale),ePw=Math.max(1,ePx1-ePx),exon.utr)ctx.fillRect(ePx,py2,ePw,h2);else if(exon.cdStart&&(ePxU=Math.round((exon.cdStart-bpStart)/xScale),ctx.fillRect(ePx,py2,ePxU-ePx,h2),ePw-=ePxU-ePx,ePx=ePxU),exon.cdEnd&&(ePxU=Math.round((exon.cdEnd-bpStart)/xScale),ctx.fillRect(ePxU,py2,ePx1-ePxU,h2),ePw-=ePx1-ePxU,ePx1=ePxU),ctx.fillRect(ePx,py,ePw,h),ePw>step+5){for(ctx.fillStyle="white",ctx.strokeStyle="white",x=ePx+step/2;x<ePx1;x+=step)igv.graphics.strokeLine(ctx,x-2*direction,cy-2,x,cy),igv.graphics.strokeLine(ctx,x-2*direction,cy+2,x,cy);ctx.fillStyle=color,ctx.strokeStyle=color}}windowX=Math.round(options.viewportContainerX),windowX1=windowX+options.viewportContainerWidth/(options.genomicState.locusCount||1),renderFeatureLabels.call(this,ctx,feature,coord.px,coord.px1,py,windowX,windowX1,options.genomicState,options)}function renderFeatureLabels(ctx,feature,featureX,featureX1,featureY,windowX,windowX1,genomicState,options){var geneColor,geneFontStyle,transform,boxX,boxX1,labelX,labelY,textFitsInBox,selectedFeatureName=igv.FeatureTrack.selectedGene?igv.FeatureTrack.selectedGene.toUpperCase():void 0;featureX1<windowX||featureX>windowX1?(boxX=featureX,boxX1=featureX1):(boxX=Math.max(featureX,windowX),boxX1=Math.min(featureX1,windowX1)),genomicState.selection&&"genes"===this.config.type&&void 0!==feature.name&&(geneColor=genomicState.selection.colorForGene(feature.name)),textFitsInBox=boxX1-boxX>ctx.measureText(feature.name).width,(void 0!==feature.name&&feature.name.toUpperCase()===selectedFeatureName||(textFitsInBox||geneColor)&&"SQUISHED"!==this.displayMode&&void 0!==feature.name)&&(geneFontStyle={font:"10px PT Sans",textAlign:"center",fillStyle:geneColor||feature.color||this.color,strokeStyle:geneColor||feature.color||this.color},"COLLAPSED"===this.displayMode&&"SLANT"===this.labelDisplayMode&&(transform={rotate:{angle:45}},delete geneFontStyle.textAlign),labelX=boxX+(boxX1-boxX)/2,labelY=getFeatureLabelY(featureY,transform),options.labelTransform?(ctx.save(),options.labelTransform(ctx,labelX),igv.graphics.fillText(ctx,feature.name,labelX,labelY,geneFontStyle,void 0),ctx.restore()):igv.graphics.fillText(ctx,feature.name,labelX,labelY,geneFontStyle,transform))}function getFeatureLabelY(featureY,transform){return transform?featureY+20:featureY+25}function monitorTrackDrag(track){var onDragEnd=function(){track.trackView&&track.trackView.tile&&"SQUISHED"!==track.displayMode&&track.trackView.update()},unSubscribe=function(removedTrack){igv.browser.un&&track===removedTrack&&(igv.browser.un("trackdrag",onDragEnd),igv.browser.un("trackremoved",unSubscribe))};igv.browser.on&&(igv.browser.on("trackdragend",onDragEnd),igv.browser.on("trackremoved",unSubscribe))}function renderVariant(variant,bpStart,xScale,pixelHeight,ctx){var style,coord=calculateFeatureCoordinates(variant,bpStart,xScale),py=20,h=10;switch(variant.genotype){case"HOMVAR":style=this.homvarColor;break;case"HETVAR":style=this.hetvarColor;break;default:style=this.color}ctx.fillStyle=style,ctx.fillRect(coord.px,py,coord.pw,h)}function renderFusionJuncSpan(feature,bpStart,xScale,pixelHeight,ctx){var py=(calculateFeatureCoordinates(feature,bpStart,xScale),5),rowHeight="EXPANDED"===this.displayMode?this.squishedCallHeight:this.expandedCallHeight;"SQUISHED"===this.displayMode&&void 0!=feature.row?py=rowHeight*feature.row:"EXPANDED"===this.displayMode&&void 0!=feature.row&&(py=rowHeight*feature.row);var cy=py+.5*rowHeight,top_y=cy-.5*rowHeight,bottom_y=cy+.5*rowHeight,junction_left_px=Math.round((feature.junction_left-bpStart)/xScale),junction_right_px=Math.round((feature.junction_right-bpStart)/xScale);ctx.beginPath(),
+ctx.moveTo(junction_left_px,cy),ctx.bezierCurveTo(junction_left_px,top_y,junction_right_px,top_y,junction_right_px,cy),ctx.lineWidth=1+Math.log(feature.num_junction_reads)/Math.log(2),ctx.strokeStyle="blue",ctx.stroke();for(var spanning_coords=feature.spanning_frag_coords,i=0;i<spanning_coords.length;i++){var spanning_info=spanning_coords[i],span_left_px=Math.round((spanning_info.left-bpStart)/xScale),span_right_px=Math.round((spanning_info.right-bpStart)/xScale);ctx.beginPath(),ctx.moveTo(span_left_px,cy),ctx.bezierCurveTo(span_left_px,bottom_y,span_right_px,bottom_y,span_right_px,cy),ctx.lineWidth=1,ctx.strokeStyle="purple",ctx.stroke()}}function renderSnp(snp,bpStart,xScale,pixelHeight,ctx){function colorByFunc(theFunc){var priorities,funcArray=theFunc.split(","),codingNonSynonSet=new Set(["nonsense","missense","stop-loss","frameshift","cds-indel"]),codingSynonSet=new Set(["coding-synon"]),spliceSiteSet=new Set(["splice-3","splice-5"]),untranslatedSet=new Set(["untranslated-5","untranslated-3"]);return priorities=funcArray.map(function(func){return codingNonSynonSet.has(func)||spliceSiteSet.has(func)?colorArrLength-1:codingSynonSet.has(func)?colorArrLength-2:untranslatedSet.has(func)?colorArrLength-3:0}),priorities.reduce(function(a,b){return Math.max(a,b)})}function colorByClass(cls){return"deletion"===cls?colorArrLength-1:"mnp"===cls?colorArrLength-2:"microsatellite"===cls||"named"===cls?colorArrLength-3:0}var colorPriority,coord=calculateFeatureCoordinates(snp,bpStart,xScale),py=20,h=10,colorArrLength=this.snpColors.length;switch(this.colorBy){case"function":colorPriority=colorByFunc(snp.func);break;case"class":colorPriority=colorByClass(snp.class)}ctx.fillStyle=this.snpColors[colorPriority],ctx.fillRect(coord.px,py,coord.pw,h)}return igv.FeatureTrack=function(config){void 0===config.height&&(config.height=50),void 0===config.maxRows&&(config.maxRows=500),igv.configTrack(this,config),this.displayMode=config.displayMode||"COLLAPSED",this.labelDisplayMode=config.labelDisplayMode,this.variantHeight=config.variantHeight||this.height,this.squishedCallHeight=config.squishedCallHeight||30,this.expandedCallHeight=config.expandedCallHeight||15,this.featureHeight=config.featureHeight||14,this.maxRows=config.maxRows,config.url&&(igv.filenameOrURLHasSuffix(config.url,".bigbed")||igv.filenameOrURLHasSuffix(config.url,".bb")||igv.filenameOrURLHasSuffix(config.url,".bigwig")||igv.filenameOrURLHasSuffix(config.url,".bw"))?this.featureSource=new igv.BWSource(config):this.featureSource=new igv.FeatureSource(config),config.render?this.render=config.render:"variant"===config.type?(this.render=renderVariant,this.homvarColor="rgb(17,248,254)",this.hetvarColor="rgb(34,12,253)"):"FusionJuncSpan"===config.type?(this.render=renderFusionJuncSpan,this.height=config.height||50,this.autoHeight=!1):"snp"===config.type?(this.render=renderSnp,this.snpColors=["rgb(0,0,0)","rgb(0,0,255)","rgb(0,255,0)","rgb(255,0,0)"],this.colorBy="function"):(this.render=renderFeature,this.arrowSpacing=30,monitorTrackDrag(this))},igv.FeatureTrack.prototype.getFileHeader=function(){var self=this;return"function"==typeof self.featureSource.getFileHeader?self.featureSource.getFileHeader().then(function(header){return header&&(header.name&&!self.config.name&&(self.name=header.name),header.color&&!self.config.color&&(self.color="rgb("+header.color+")")),header}):null},igv.FeatureTrack.prototype.getFeatures=function(chr,bpStart,bpEnd,bpPerPixel){return this.featureSource.getFeatures(chr,bpStart,bpEnd,bpPerPixel)},igv.FeatureTrack.prototype.computePixelHeight=function(features){var height;if("COLLAPSED"===this.displayMode)return this.variantHeight;var maxRow=0;return features&&"function"==typeof features.forEach&&features.forEach(function(feature){feature.row&&feature.row>maxRow&&(maxRow=feature.row)}),height=Math.max(this.variantHeight,(maxRow+1)*("SQUISHED"===this.displayMode?this.squishedCallHeight:this.expandedCallHeight))},igv.FeatureTrack.prototype.draw=function(options){var selectedFeatureName,selectedFeature,c,track=this,featureList=options.features,ctx=options.context,bpPerPixel=options.bpPerPixel,bpStart=options.bpStart,pixelWidth=options.pixelWidth,pixelHeight=options.pixelHeight,bpEnd=bpStart+pixelWidth*bpPerPixel+1;if(igv.graphics.fillRect(ctx,0,0,pixelWidth,pixelHeight,{fillStyle:"rgb(255, 255, 255)"}),featureList){selectedFeatureName=igv.FeatureTrack.selectedGene?igv.FeatureTrack.selectedGene.toUpperCase():void 0;for(var gene,i=0,len=featureList.length;i<len;i++)if(gene=featureList[i],!(gene.end<bpStart)){if(gene.start>bpEnd)break;!selectedFeature&&selectedFeatureName&&selectedFeatureName===gene.name.toUpperCase()?selectedFeature=gene:track.render.call(this,gene,bpStart,bpPerPixel,pixelHeight,ctx,options)}selectedFeature&&(c=selectedFeature.color,selectedFeature.color="rgb(255,0,0)",track.render.call(this,selectedFeature,bpStart,bpPerPixel,pixelHeight,ctx,options),selectedFeature.color=c)}else console.log("No feature list")},igv.FeatureTrack.prototype.popupDataWithConfiguration=function(config){return this.popupData(config.genomicLocation,config.x,config.y,config.viewport.genomicState.referenceFrame)},igv.FeatureTrack.prototype.popupData=function(genomicLocation,xOffset,yOffset,referenceFrame){if(this.featureSource.featureCache){var tolerance,featureList,row,popupData,ss,ee;if(tolerance=2*referenceFrame.bpPerPixel,ss=genomicLocation-tolerance,ee=genomicLocation+tolerance,featureList=this.featureSource.featureCache.queryFeatures(referenceFrame.chrName,ss,ee),"COLLAPSED"!==this.displayMode&&(row="SQUISHED"===this.displayMode?Math.floor((yOffset-2)/this.expandedCallHeight):Math.floor((yOffset-5)/this.squishedCallHeight)),featureList&&featureList.length>0)return popupData=[],featureList.forEach(function(feature){var featureData;feature.end>=ss&&feature.start<=ee&&(void 0!==row&&void 0!==feature.row&&row!==feature.row||(featureData=feature.popupData?feature.popupData(genomicLocation):extractPopupData(feature),featureData&&(popupData.length>0&&popupData.push("<HR>"),Array.prototype.push.apply(popupData,featureData))))}),popupData}return null},igv.FeatureTrack.prototype.menuItemList=function(popover){function markupStringified(displayMode,index,selfDisplayMode){var lut,chosen;return lut={COLLAPSED:"Collapse",SQUISHED:"Squish",EXPANDED:"Expand"},chosen=0===index?'<div class="igv-track-menu-border-top">':"<div>",displayMode===selfDisplayMode?chosen+'<i class="fa fa-check fa-check-shim"></i>'+lut[displayMode]+"</div>":chosen+'<i class="fa fa-check fa-check-shim fa-check-hidden"></i>'+lut[displayMode]+"</div>"}function colorSchemeMarkup(colorScheme,index,selfColorScheme){var chosen=0===index?'<div class="igv-track-menu-border-top">':"<div>";return colorScheme===selfColorScheme?chosen+'<i class="fa fa-check fa-check-shim"></i>Color by '+colorScheme+"</div>":chosen+'<i class="fa fa-check fa-check-shim fa-check-hidden"></i>Color by '+colorScheme+"</div>"}var mapped,self=this,menuItems=[];if(this.render===renderSnp){var colorByItems=["function","class"].map(function(colorScheme,index){return{object:$(colorSchemeMarkup(colorScheme,index,self.colorBy)),click:function(){popover.hide(),self.colorBy=colorScheme,self.trackView.update()}}});menuItems=menuItems.concat(colorByItems)}return mapped=["COLLAPSED","SQUISHED","EXPANDED"].map(function(displayMode,index){return{object:$(markupStringified(displayMode,index,self.displayMode)),click:function(){popover.hide(),self.displayMode=displayMode,self.trackView.update()}}}),menuItems=menuItems.concat(mapped)},igv.FeatureTrack.prototype.popupMenuItemList=function(config){function setColorBy(value){self.colorBy=value,self.trackView.update(),config.popover.hide()}if(this.render===renderSnp){var menuItems=[],self=this;return menuItems.push({name:"Color by function",click:function(){setColorBy("function")}}),menuItems.push({name:"Color by class",click:function(){setColorBy("class")}}),menuItems}},igv.FeatureTrack.prototype.description=function(){var desc;return renderSnp===this.render?(desc="<html>"+this.name+"<hr>",desc+="<em>Color By Function:</em><br>",desc+='<span style="color:red">Red</span>: Coding-Non-Synonymous, Splice Site<br>',desc+='<span style="color:green">Green</span>: Coding-Synonymous<br>',desc+='<span style="color:blue">Blue</span>: Untranslated<br>',desc+='<span style="color:black">Black</span>: Intron, Locus, Unknown<br><br>',desc+="<em>Color By Class:</em><br>",desc+='<span style="color:red">Red</span>: Deletion<br>',desc+='<span style="color:green">Green</span>: MNP<br>',desc+='<span style="color:blue">Blue</span>: Microsatellite, Named<br>',desc+='<span style="color:black">Black</span>: Indel, Insertion, SNP',desc+="</html>"):this.name},igv.FeatureTrack.prototype.popupMenuItemList=function(config){function setColorBy(value){self.colorBy=value,self.trackView.update(),config.popover.hide()}if(this.render===renderSnp){var menuItems=[],self=this;return menuItems.push({name:"Color by function",click:function(){setColorBy("function")}}),menuItems.push({name:"Color by class",click:function(){setColorBy("class")}}),menuItems}},igv}(igv||{}),igv=function(igv){return igv.FeatureUtils={packFeatures:function(features,maxRows,sorted){var start,end;if(features){if(maxRows=maxRows||1e4,sorted||features.sort(function(a,b){return a.start-b.start}),0===features.length)return[];var nextStart,row,index,bucket,feature,bucketStart,bucketList=[],allocatedCount=0,lastAllocatedCount=0,gap=2,packedRows=[];for(start=features[0].start,end=features[features.length-1].start,bucketStart=Math.max(start,features[0].start),nextStart=bucketStart,features.forEach(function(alignment){var buckListIndex=Math.max(0,alignment.start-bucketStart);void 0===bucketList[buckListIndex]&&(bucketList[buckListIndex]=[]),bucketList[buckListIndex].push(alignment)}),row=0;allocatedCount<features.length&&packedRows.length<maxRows;){for(;nextStart<=end;){for(bucket=void 0;!bucket&&nextStart<=end;)index=nextStart-bucketStart,void 0===bucketList[index]?++nextStart:bucket=bucketList[index];if(!bucket)break;feature=bucket.pop(),0===bucket.length&&(bucketList[index]=void 0),feature.row=row,nextStart=feature.end+gap,++allocatedCount}if(row++,nextStart=bucketStart,allocatedCount===lastAllocatedCount)break;lastAllocatedCount=allocatedCount}}}},igv}(igv||{}),igv=function(igv){function setTypes(){transcriptTypes=new Set,cdsTypes=new Set,utrTypes=new Set,exonTypes=new Set,["transcript","primary_transcript","processed_transcript","mRNA","mrna"].forEach(function(m){transcriptTypes.add(m)}),["CDS","cds","start_codon","stop_codon"].forEach(function(m){cdsTypes.add(m)}),["5UTR","3UTR","UTR","five_prime_UTR","three_prime_UTR","3'-UTR","5'-UTR"].forEach(function(m){utrTypes.add(m)}),["exon","coding-exon"].forEach(function(m){exonTypes.add(m)})}function combineFeaturesGTF(features){var transcripts={},combinedFeatures=[];return features.forEach(function(f){var transcriptId,gffTranscript;transcriptTypes.has(f.type)&&(transcriptId=f.id,transcriptId?(gffTranscript=new GFFTranscript(f),transcripts[transcriptId]=gffTranscript,combinedFeatures.push(gffTranscript)):combinedFeatures.push(f))}),features.forEach(function(f){var id,transcript;exonTypes.has(f.type)&&(id=f.id,id&&(transcript=transcripts[id],void 0===transcript&&(transcript=new GFFTranscript(f),transcripts[id]=transcript,combinedFeatures.push(transcript)),transcript.addExon(f)))}),features.forEach(function(f){var id,transcript;(cdsTypes.has(f.type)||utrTypes.has(f.type))&&(id=f.id,id&&(transcript=transcripts[id],void 0===transcript&&(transcript=new GFFTranscript(f),transcripts[id]=transcript,combinedFeatures.push(transcript)),utrTypes.has(f.type)?transcript.addUTR(f):transcript.addCDS(f)))}),combinedFeatures.forEach(function(f){f instanceof GFFTranscript&&f.finish()}),combinedFeatures.sort(function(a,b){return a.start-b.start}),combinedFeatures}function combineFeaturesGFF(features){function getParents(f){return f.parent&&""!==f.parent.trim()?f.parent.trim().split(","):null}var parents,transcripts={},combinedFeatures=[];return features.forEach(function(f){var transcriptId,gffTranscript;transcriptTypes.has(f.type)&&(transcriptId=f.id,transcriptId?(gffTranscript=new GFFTranscript(f),transcripts[transcriptId]=gffTranscript,combinedFeatures.push(gffTranscript)):combinedFeatures.push(f))}),features.forEach(function(f){var transcript;exonTypes.has(f.type)&&(parents=getParents(f),parents?parents.forEach(function(id){transcript=transcripts[id],void 0===transcript&&(transcript=new GFFTranscript(f),transcripts[id]=transcript,combinedFeatures.push(transcript)),transcript.addExon(f)}):combinedFeatures.push(f))}),features.forEach(function(f){var transcript;(cdsTypes.has(f.type)||utrTypes.has(f.type))&&(parents=getParents(f),parents?parents.forEach(function(id){transcript=transcripts[id],void 0===transcript&&(transcript=new GFFTranscript(f),transcripts[id]=transcript,combinedFeatures.push(transcript)),utrTypes.has(f.type)?transcript.addUTR(f):transcript.addCDS(f)}):combinedFeatures.push(f))}),combinedFeatures.forEach(function(f){f instanceof GFFTranscript&&f.finish()}),combinedFeatures.sort(function(a,b){return a.start-b.start}),combinedFeatures}var transcriptTypes,cdsTypes,utrTypes,exonTypes;return igv.GFFHelper=function(format){this.format=format},igv.GFFHelper.prototype.combineFeatures=function(features){return void 0===transcriptTypes&&setTypes(),"gff3"===this.format?combineFeaturesGFF.call(this,features):combineFeaturesGTF.call(this,features)},GFFTranscript=function(feature){Object.assign(this,feature),this.exons=[],this.attributeString=feature.attributeString},GFFTranscript.prototype.addExon=function(feature){this.exons.push({start:feature.start,end:feature.end}),this.start=Math.min(this.start,feature.start),this.end=Math.max(this.end,feature.end)},GFFTranscript.prototype.addCDS=function(cds){var i,exon,exons=this.exons;for(i=0;i<exons.length;i++)if(exons[i].start<=cds.start&&exons[i].end>=cds.end){exon=exons[i];break}exon?(exon.cdStart=exon.cdStart?Math.min(cds.start,exon.cdStart):cds.start,exon.cdEnd=exon.cdEnd?Math.max(cds.end,exon.cdEnd):cds.end):exons.push({start:cds.start,end:cds.end,cdStart:cds.start,cdEnd:cds.end}),this.start=Math.min(this.start,cds.start),this.end=Math.max(this.end,cds.end),this.cdStart=this.cdStart?Math.min(cds.start,this.cdStart):cds.start,this.cdEnd=this.cdEnd?Math.max(cds.end,this.cdEnd):cds.end},GFFTranscript.prototype.addUTR=function(utr){var i,exon,exons=this.exons;for(i=0;i<exons.length;i++)if(exons[i].start<=utr.start&&exons[i].end>=utr.end){exon=exons[i];break}exon?utr.start===exon.start&&utr.end===exon.end&&(exon.utr=!0):exons.push({start:utr.start,end:utr.end,utr:!0}),this.start=Math.min(this.start,utr.start),this.end=Math.max(this.end,utr.end)},GFFTranscript.prototype.finish=function(){var cdStart=this.cdStart,cdEnd=this.cdEnd;this.exons.sort(function(a,b){return a.start-b.start}),cdStart&&this.exons.forEach(function(exon){(exon.end<cdStart||exon.start>cdEnd)&&(exon.utr=!0)})},igv}(igv||{}),igv=function(igv){function autoscale(chr,featureArrays){var min=0,max=-Number.MAX_VALUE;return featureArrays.forEach(function(features){features.forEach(function(f){Number.isNaN(f.value)||(min=Math.min(min,f.value),max=Math.max(max,f.value))})}),{min:min,max:max}}return igv.MergedTrack=function(config){var self=this;return config.tracks?(void 0===config.height&&(config.height=50),igv.configTrack(this,config),this.tracks=[],void config.tracks.forEach(function(tconf){tconf.type||igv.inferTrackTypes(tconf);var t=igv.createTrack(tconf);t?(t.autoscale=!1,self.tracks.push(t)):console.log("Could not create track "+tconf)})):void console.log("Error: not tracks defined for merged track. "+config)},igv.MergedTrack.prototype.getFeatures=function(chr,bpStart,bpEnd,bpPerPixel){var promises=this.tracks.map(function(t){return t.getFeatures(chr,bpStart,bpEnd,bpPerPixel)});return Promise.all(promises)},igv.MergedTrack.prototype.draw=function(options){var i,len,mergedFeatures,trackOptions,dataRange;for(mergedFeatures=options.features,dataRange=autoscale(options.genomicState.chromosome.name,mergedFeatures),i=0,len=this.tracks.length;i<len;i++)trackOptions=Object.assign({},options),trackOptions.features=mergedFeatures[i],this.tracks[i].dataRange=dataRange,this.tracks[i].draw(trackOptions)},igv}(igv||{}),igv=function(igv){var sampleColumn=(Number.MAX_VALUE,0),chrColumn=1,startColumn=2,endColumn=3;return igv.SegParser=function(){},igv.SegParser.prototype.parseHeader=function(data){var line,i,tokens,lines=data.splitLines(),len=lines.length;for(i=0;i<len;i++)if(line=lines[i],!line.startsWith("#"))return tokens=line.split("\t"),this.header={headings:tokens,lineCount:i+1},this.header;return this.header},igv.SegParser.prototype.parseFeatures=function(data){var tokens,line,i,dataColumn,lines=data?data.splitLines():[],len=lines.length,allFeatures=[];for(this.header||(this.header=this.parseHeader(data)),dataColumn=this.header.headings.length-1,i=this.header.lineCount;i<len;i++)line=lines[i],tokens=lines[i].split("\t"),tokens.length>dataColumn&&allFeatures.push({sample:tokens[sampleColumn],chr:tokens[chrColumn],start:parseInt(tokens[startColumn]),end:parseInt(tokens[endColumn]),value:parseFloat(tokens[dataColumn])});return allFeatures},igv}(igv||{}),igv=function(igv){var sortDirection="DESC";return igv.SegTrack=function(config){igv.configTrack(this,config),this.isLog=void 0!==config.isLog&&config.isLog,this.displayMode=config.displayMode||"SQUISHED",this.maxHeight=config.maxHeight||500,this.sampleSquishHeight=config.sampleSquishHeight||2,this.sampleExpandHeight=config.sampleExpandHeight||12,this.posColorScale=config.posColorScale||new igv.GradientColorScale({low:.1,lowR:255,lowG:255,lowB:255,high:1.5,highR:255,highG:0,highB:0}),this.negColorScale=config.negColorScale||new igv.GradientColorScale({low:-1.5,lowR:0,lowG:0,lowB:255,high:-.1,highR:255,highG:255,highB:255}),this.sampleCount=0,this.samples={},this.sampleNames=[],this.featureSource=new igv.FeatureSource(this.config),this.supportsWholeGenome=!0},igv.SegTrack.prototype.menuItemList=function(popover){var self=this;return[{name:"SQUISHED"===this.displayMode?"Expand sample hgt":"Squish sample hgt",click:function(){popover.hide(),self.toggleSampleHeight()}}]},igv.SegTrack.prototype.toggleSampleHeight=function(){this.displayMode="SQUISHED"===this.displayMode?"EXPANDED":"SQUISHED",this.trackView.update()},igv.SegTrack.prototype.getFeatures=function(chr,bpStart,bpEnd){var self=this;return 0===self.sampleCount&&"function"==typeof self.featureSource.reader.allSamples?self.featureSource.reader.allSamples().then(function(samples){return samples.forEach(function(sample){self.samples[sample]=self.sampleCount,self.sampleNames.push(sample),self.sampleCount++}),self.featureSource.getFeatures(chr,bpStart,bpEnd)}):self.featureSource.getFeatures(chr,bpStart,bpEnd)},igv.SegTrack.prototype.draw=function(options){var featureList,ctx,bpPerPixel,bpStart,pixelWidth,pixelHeight,bpEnd,segment,len,sample,i,y,color,value,px,px1,pw,xScale,sampleHeight,border,myself=this;if(sampleHeight="SQUISHED"===this.displayMode?this.sampleSquishHeight:this.sampleExpandHeight,border="SQUISHED"===this.displayMode?0:1,ctx=options.context,pixelWidth=options.pixelWidth,pixelHeight=options.pixelHeight,igv.graphics.fillRect(ctx,0,0,pixelWidth,pixelHeight,{fillStyle:"rgb(255, 255, 255)"}),featureList=options.features){for(bpPerPixel=options.bpPerPixel,bpStart=options.bpStart,bpEnd=bpStart+pixelWidth*bpPerPixel+1,xScale=bpPerPixel,i=0,len=featureList.length;i<len;i++)sample=featureList[i].sample,this.samples.hasOwnProperty(sample)||(this.samples[sample]=myself.sampleCount,this.sampleNames.push(sample),this.sampleCount++);for(i=0,len=featureList.length;i<len;i++)if(segment=featureList[i],!(segment.end<bpStart)){if(segment.start>bpEnd)break;y=myself.samples[segment.sample]*sampleHeight+border,value=segment.value,myself.isLog||(value=Math.log2(value/2)),color=value<-.1?myself.negColorScale.getColor(value):value>.1?myself.posColorScale.getColor(value):"white",px=Math.round((segment.start-bpStart)/xScale),px1=Math.round((segment.end-bpStart)/xScale),pw=Math.max(1,px1-px),igv.graphics.fillRect(ctx,px,y,pw,sampleHeight-2*border,{fillStyle:color})}}else console.log("No feature list")},igv.SegTrack.prototype.computePixelHeight=function(features){var i,len,sample,sampleHeight="SQUISHED"===this.displayMode?this.sampleSquishHeight:this.sampleExpandHeight;for(i=0,len=features.length;i<len;i++)sample=features[i].sample,this.samples.hasOwnProperty(sample)||(this.samples[sample]=this.sampleCount,this.sampleNames.push(sample),this.sampleCount++);return this.sampleCount*sampleHeight},igv.SegTrack.prototype.sortSamples=function(chr,bpStart,bpEnd,direction){var self=this,d2="ASC"===direction?1:-1;this.featureSource.getFeatures(chr,bpStart,bpEnd).then(function(featureList){var segment,min,max,f,i,s,sampleNames,scores={},bpLength=bpEnd-bpStart+1;for(i=0;i<featureList.length;i++)if(segment=featureList[i],!(segment.end<bpStart)){if(segment.start>bpEnd)break;min=Math.max(bpStart,segment.start),max=Math.min(bpEnd,segment.end),f=(max-min)/bpLength,s=scores[segment.sample],s||(s=0),scores[segment.sample]=s+f*segment.value}for(sampleNames=Object.keys(self.samples),sampleNames.sort(function(a,b){var s1=scores[a],s2=scores[b];return s1||(s1=Number.MAX_VALUE),s2||(s2=Number.MAX_VALUE),s1==s2?0:s1>s2?d2:d2*-1}),i=0;i<sampleNames.length;i++)self.samples[sampleNames[i]]=i;self.sampleNames=sampleNames,self.trackView.update()})},igv.SegTrack.prototype.altClick=function(genomicLocation,referenceFrame,event){var bpWidth=referenceFrame.toBP(2.5);this.sortSamples(referenceFrame.chrName,genomicLocation-bpWidth,genomicLocation+bpWidth,sortDirection),sortDirection="ASC"===sortDirection?"DESC":"ASC"},igv.SegTrack.prototype.popupDataWithConfiguration=function(config){return this.popupData(config.genomicLocation,config.x,config.y,config.viewport.genomicState.referenceFrame)},igv.SegTrack.prototype.popupData=function(genomicLocation,xOffset,yOffset,referenceFrame){var sampleName,row,items,sampleHeight="SQUISHED"===this.displayMode?this.sampleSquishHeight:this.sampleExpandHeight;if(row=Math.floor(yOffset/sampleHeight),row<this.sampleNames.length){if(sampleName=this.sampleNames[row],items=[{name:"Sample",value:sampleName}],this.featureSource.featureCache){var chr=referenceFrame.chrName,featureList=this.featureSource.featureCache.queryFeatures(chr,genomicLocation,genomicLocation);featureList.forEach(function(f){f.sample===sampleName&&items.push({name:"Value",value:f.value})})}return items}return null},igv.SegTrack.prototype.popupMenuItemList=function(config){var $e,clickHandler,self=this;return $e=$("<div>"),$e.text("Sort by value"),clickHandler=function(){self.altClick(config.genomicLocation,config.viewport.genomicState.referenceFrame),config.popover.hide()},[{name:void 0,object:$e,click:clickHandler,init:void 0}]},igv}(igv||{}),igv=function(igv){return igv.loadTribbleIndex=function(indexFile,config){var genome=igv.browser?igv.browser.genome:null;return new Promise(function(fullfill){function readHeader(parser){var version=(parser.getInt(),parser.getInt(),parser.getInt()),flags=(parser.getString(),parser.getLong(),parser.getLong(),parser.getString(),parser.getInt());if(version<3&&(flags&SEQUENCE_DICTIONARY_FLAG)==SEQUENCE_DICTIONARY_FLAG,version>=3)for(var nProperties=parser.getInt();nProperties-- >0;){parser.getString(),parser.getString()}}function readLinear(parser){var chr=parser.getString(),blockMax=0;genome&&(chr=genome.getChromosomeName(chr));for(var nBins=(parser.getInt(),parser.getInt()),blocks=(parser.getInt(),parser.getInt()>0,parser.getInt(),new Array),pos=parser.getLong(),blocks=new Array,binNumber=0;binNumber<nBins;binNumber++){var nextPos=parser.getLong();blocks.push({min:pos,max:nextPos}),pos=nextPos,nextPos>blockMax&&(blockMax=nextPos)}return{chr:chr,blocks:blocks}}igv.xhr.loadArrayBuffer(indexFile,igv.buildOptions(config)).then(function(arrayBuffer){if(arrayBuffer){var index={},parser=new igv.BinaryParser(new DataView(arrayBuffer));readHeader(parser);for(var nChrs=parser.getInt();nChrs-- >0;){var chrIdx=readLinear(parser);index[chrIdx.chr]=chrIdx}fullfill(new igv.TribbleIndex(index))}else fullfill(null)}).catch(function(error){console.log(error),fullfill(null)})})},igv.TribbleIndex=function(chrIndexTable){this.chrIndex=chrIndexTable},igv.TribbleIndex.prototype.blocksForRange=function(queryChr,min,max){var chrIdx=this.chrIndex[queryChr];if(chrIdx){var blocks=chrIdx.blocks,lastBlock=blocks[blocks.length-1],mergedBlock={minv:{block:blocks[0].min,offset:0},maxv:{block:lastBlock.max,offset:0}};return[mergedBlock]}return null},igv}(igv||{}),igv=function(igv){function addExons(sample){var exonCount,exonStarts,exonEnds,exons,eStart,eEnd;exonCount=sample.exonCount,exonStarts=sample.exonStarts.split(","),exonEnds=sample.exonEnds.split(","),exons=[];for(var i=0;i<exonCount;i++){eStart=parseInt(exonStarts[i]),eEnd=parseInt(exonEnds[i]);var exon={start:eStart,end:eEnd};(sample.cdsStart>eEnd||sample.cdsEnd<sample.cdsStart)&&(exon.utr=!0),sample.cdsStart>=eStart&&sample.cdsStart<=eEnd&&(exon.cdStart=sample.cdsStart),sample.cdsEnd>=eStart&&sample.cdsEnd<=eEnd&&(exon.cdEnd=sample.cdsEnd),exons.push(exon)}sample.exons=exons}return igv.UCSCServiceReader=function(config){this.config=config},igv.UCSCServiceReader.prototype.readFeatures=function(chr,start,end){var self=this,url=this.config.url+"&table="+this.config.tableName+"&chr="+chr+"&start="+start+"&end="+end;return igv.xhr.loadJson(url,self.config).then(function(data){return data?(data.forEach(function(sample){sample.hasOwnProperty("exonStarts")&&sample.hasOwnProperty("exonEnds")&&sample.hasOwnProperty("exonCount")&&sample.hasOwnProperty("cdsStart")&&sample.hasOwnProperty("cdsEnd")&&addExons(sample)}),data):null})},igv}(igv||{}),igv=function(igv){function autoscale(features){var min=0,max=-Number.MAX_VALUE;return features.forEach(function(f){Number.isNaN(f.value)||(min=Math.min(min,f.value),max=Math.max(max,f.value))}),{min:min,max:max}}function signsDiffer(a,b){return a>0&&b<0||a<0&&b>0}return igv.WIGTrack=function(config){this.config=config,this.url=config.url,void 0===config.color&&(config.color="rgb(150,150,150)"),void 0===config.height&&(config.height=50),igv.configTrack(this,config),"bigwig"===config.format?this.featureSource=new igv.BWSource(config):"tdf"===config.format?this.featureSource=new igv.TDFSource(config):this.featureSource=new igv.FeatureSource(config),void 0!==config.max?this.dataRange={min:config.min||0,max:config.max}:this.autoscale=!0,this.windowFunction=config.windowFunction||"mean",this.paintAxis=igv.paintAxis},igv.WIGTrack.prototype.getFeatures=function(chr,bpStart,bpEnd,bpPerPixel){return this.featureSource.getFeatures(chr,bpStart,bpEnd,bpPerPixel,this.windowFunction)},igv.WIGTrack.prototype.menuItemList=function(popover){function htmlStringified(autoscale){var html=[];return html.push("<div>"),html.push(!0===autoscale?'<i class="fa fa-check">':'<i class="fa fa-check fa-check-hidden">'),html.push("</i>"),html.push("Autoscale"),html.push("</div>"),html.join("")}var self=this,menuItems=[];return menuItems.push(igv.dataRangeMenuItem(popover,this.trackView)),menuItems.push({object:$(htmlStringified(self.autoscale)),click:function(){var $fa=$(this).find("i");popover.hide(),self.autoscale=!self.autoscale,!0===self.autoscale?$fa.removeClass("fa-check-hidden"):$fa.addClass("fa-check-hidden"),self.trackView.update()}}),menuItems},igv.WIGTrack.prototype.getFileHeader=function(){var self=this;return"function"==typeof self.featureSource.getFileHeader?self.featureSource.getFileHeader().then(function(header){return header&&(header.name&&!self.config.name&&(self.name=header.name),header.color&&!self.config.color&&(self.color="rgb("+header.color+")")),header}):Promise.resolve(null)},igv.WIGTrack.prototype.draw=function(options){function renderFeature(feature,index,featureList){var yUnitless,heightUnitLess,x,width,rectEnd;feature.end<bpStart||feature.start>bpEnd||(x=Math.floor((feature.start-bpStart)/bpPerPixel),rectEnd=Math.ceil((feature.end-bpStart)/bpPerPixel),width=Math.max(1,rectEnd-x),signsDiffer(featureValueMinimum,featureValueMaximum)?feature.value<0?(yUnitless=featureValueMaximum/featureValueRange,heightUnitLess=-feature.value/featureValueRange):(yUnitless=(featureValueMaximum-feature.value)/featureValueRange,heightUnitLess=feature.value/featureValueRange):featureValueMinimum<0?(yUnitless=0,heightUnitLess=-feature.value/featureValueRange):(yUnitless=1-feature.value/featureValueRange,heightUnitLess=feature.value/featureValueRange),igv.graphics.fillRect(ctx,x,yUnitless*pixelHeight,width,heightUnitLess*pixelHeight,{fillStyle:self.color}))}var featureValueMinimum,featureValueMaximum,featureValueRange,baselineColor,self=this,features=options.features,ctx=options.context,bpPerPixel=options.bpPerPixel,bpStart=options.bpStart,pixelWidth=options.pixelWidth,pixelHeight=options.pixelHeight,bpEnd=bpStart+pixelWidth*bpPerPixel+1;if(self.color&&self.color.startsWith("rgb(")&&(baselineColor=igv.Color.addAlpha(self.color,.1)),features&&features.length>0){if(self.autoscale||void 0===self.dataRange){var s=autoscale(features);featureValueMinimum=self.config.min||s.min,featureValueMaximum=s.max}else featureValueMinimum=void 0===self.dataRange.min?0:self.dataRange.min,featureValueMaximum=self.dataRange.max;if(void 0===self.dataRange&&(self.dataRange={}),self.dataRange.min=featureValueMinimum,self.dataRange.max=featureValueMaximum,featureValueMaximum>featureValueMinimum){if(featureValueRange=featureValueMaximum-featureValueMinimum,features.forEach(renderFeature),featureValueMinimum<0){var alpha=ctx.lineWidth;ctx.lineWidth=5;var basepx=featureValueMaximum/(featureValueMaximum-featureValueMinimum)*options.pixelHeight;ctx.lineWidth=alpha}igv.graphics.strokeLine(ctx,0,basepx,options.pixelWidth,basepx,{strokeStyle:baselineColor})}}},igv}(igv||{}),igv=function(igv){function translateCigar(cigar){var cigarUnit,opLen,opLtr,i,lengthOnRef=0,cigarArray=[];for(i=0;i<cigar.length;i++)cigarUnit=cigar[i],opLtr=CigarOperationTable[cigarUnit.operation],opLen=parseInt(cigarUnit.operationLength),"M"!=opLtr&&"EQ"!=opLtr&&"X"!=opLtr&&"D"!=opLtr&&"N"!=opLtr&&"="!=opLtr||(lengthOnRef+=opLen),cigarArray.push({len:opLen,ltr:opLtr});return{lengthOnRef:lengthOnRef,array:cigarArray}}function translateCigar(cigar){var cigarUnit,opLen,opLtr,lengthOnRef=0,cigarArray=[];for(i=0;i<cigar.length;i++)cigarUnit=cigar[i],opLtr=CigarOperationTable[cigarUnit.operation],opLen=parseInt(cigarUnit.operationLength),"M"!=opLtr&&"EQ"!=opLtr&&"X"!=opLtr&&"D"!=opLtr&&"N"!=opLtr&&"="!=opLtr||(lengthOnRef+=opLen),cigarArray.push({len:opLen,ltr:opLtr});return{lengthOnRef:lengthOnRef,array:cigarArray}}function makeBlocks(record,cigarArray){for(var blockSeq,blockQuals,gapType,blocks=[],seqOffset=0,pos=record.start,len=cigarArray.length,i=0;i<len;i++){var c=cigarArray[i];switch(c.ltr){case"H":break;case"P":break;case"S":seqOffset+=c.len,gapType="S";break;case"N":pos+=c.len,gapType="N";break;case"D":pos+=c.len,gapType="D";break;case"I":seqOffset+=c.len;break;case"M":case"EQ":case"=":case"X":blockSeq="*"===record.seq?"*":record.seq.substr(seqOffset,c.len),blockQuals="*"===record.qual?"*":record.qual.slice(seqOffset,c.len),blocks.push({start:pos,len:c.len,seq:blockSeq,qual:blockQuals,gapType:gapType}),seqOffset+=c.len,pos+=c.len;break;default:console.log("Error processing cigar element: "+c.len+c.ltr)}}return blocks}var CigarOperationTable={ALIGNMENT_MATCH:"M",INSERT:"I",DELETE:"D",SKIP:"N",CLIP_SOFT:"S",CLIP_HARD:"H",PAD:"P",SEQUENCE_MATCH:"=",SEQUENCE_MISMATCH:"X"};return igv.Ga4ghAlignment=function(json,genome){var alignment,cigarDecoded;this.readName=json.fragmentName,this.properPlacement=json.properPlacement,this.duplicateFragment=json.duplicateFragment,this.numberReads=json.numberReads,this.fragmentLength=json.fragmentLength,this.readNumber=json.readNumber,this.failedVendorQualityChecks=json.failedVendorQualityChecks,this.secondaryAlignment=json.secondaryAlignment,
+this.supplementaryAlignment=json.supplementaryAlignment,this.seq=json.alignedSequence,this.qual=json.alignedQuality,this.tagDict=json.info,alignment=json.alignment,alignment?(this.mapped=!0,this.chr=json.alignment.position.referenceName,genome&&(this.chr=genome.getChromosomeName(this.chr)),this.start=parseInt(json.alignment.position.position),this.strand=!json.alignment.position.reverseStrand,this.mq=json.alignment.mappingQuality,cigarDecoded=translateCigar(json.alignment.cigar),this.lengthOnRef=cigarDecoded.lengthOnRef,this.blocks=makeBlocks(this,cigarDecoded.array)):this.mapped=!1,json.nextMatePosition&&(this.mate={chr:json.nextMatePosition.referenceFrame,position:parseInt(json.nextMatePosition.position),strand:!json.nextMatePosition.reverseStrand},this.info=json.info)},igv.Ga4ghAlignment.prototype.isMapped=function(){return this.mapped},igv.Ga4ghAlignment.prototype.isPaired=function(){return this.numberReads&&this.numberReads>1},igv.Ga4ghAlignment.prototype.isProperPair=function(){return void 0===this.properPlacement||this.properPlacement},igv.Ga4ghAlignment.prototype.isFirstOfPair=function(){return this.readNumber&&0===this.readNumber},igv.Ga4ghAlignment.prototype.isSecondOfPair=function(){return this.readNumber&&1===this.readNumber},igv.Ga4ghAlignment.prototype.isSecondary=function(){return this.secondaryAlignment},igv.Ga4ghAlignment.prototype.isSupplementary=function(){return this.supplementaryAlignment},igv.Ga4ghAlignment.prototype.isFailsVendorQualityCheck=function(){return this.failedVendorQualityChecks},igv.Ga4ghAlignment.prototype.isDuplicate=function(){return this.duplicateFragment},igv.Ga4ghAlignment.prototype.isMateMapped=function(){return this.mate},igv.Ga4ghAlignment.prototype.mateStrand=function(){return this.mate&&this.mate.strand},igv.Ga4ghAlignment.prototype.tags=function(){return this.info},igv.Ga4ghAlignment.prototype.popupData=function(genomicLocation){function yesNo(bool){return bool?"Yes":"No"}var isFirst,nameValues;nameValues=[],nameValues.push({name:"Read Name",value:this.readName}),nameValues.push("<hr>"),nameValues.push({name:"Alignment Start",value:igv.numberFormatter(1+this.start),borderTop:!0}),nameValues.push({name:"Read Strand",value:!0===this.strand?"(+)":"(-)",borderTop:!0}),nameValues.push({name:"Cigar",value:this.cigar}),nameValues.push({name:"Mapped",value:yesNo(this.isMapped())}),nameValues.push({name:"Mapping Quality",value:this.mq}),nameValues.push({name:"Secondary",value:yesNo(this.isSecondary())}),nameValues.push({name:"Supplementary",value:yesNo(this.isSupplementary())}),nameValues.push({name:"Duplicate",value:yesNo(this.isDuplicate())}),nameValues.push({name:"Failed QC",value:yesNo(this.isFailsVendorQualityCheck())}),this.isPaired()&&(nameValues.push("<hr>"),nameValues.push({name:"First in Pair",value:!this.isSecondOfPair(),borderTop:!0}),nameValues.push({name:"Mate is Mapped",value:yesNo(this.isMateMapped())}),this.isMapped()&&(nameValues.push({name:"Mate Start",value:this.matePos}),nameValues.push({name:"Mate Strand",value:this.mateStrand()?"(-)":"(+)"}),nameValues.push({name:"Insert Size",value:this.fragmentLength}))),nameValues.push("<hr>"),this.tags(),isFirst=!0;for(var key in this.tagDict)this.tagDict.hasOwnProperty(key)&&(isFirst?(nameValues.push({name:key,value:this.tagDict[key],borderTop:!0}),isFirst=!1):nameValues.push({name:key,value:this.tagDict[key]}));return nameValues},igv}(igv||{}),igv=function(igv){function populateChrAliasTable(chrAliasTable,datasetId){var i;if("461916304629"===datasetId||"337315832689"===datasetId){for(i=1;i<23;i++)chrAliasTable["chr"+i]=i;chrAliasTable.chrX="X",chrAliasTable.chrY="Y",chrAliasTable.chrM="MT"}}var CigarOperationTable={ALIGNMENT_MATCH:"M",INSERT:"I",DELETE:"D",SKIP:"N",CLIP_SOFT:"S",CLIP_HARD:"H",PAD:"P",SEQUENCE_MATCH:"=",SEQUENCE_MISMATCH:"X"};return igv.Ga4ghAlignmentReader=function(config){this.config=config,this.url=config.url,this.filter=config.filter||new igv.BamFilter,this.readGroupSetIds=config.readGroupSetIds,this.authKey=config.authKey,this.samplingWindowSize=void 0===config.samplingWindowSize?100:config.samplingWindowSize,this.samplingDepth=void 0===config.samplingDepth?100:config.samplingDepth,config.viewAsPairs?this.pairsSupported=!0:this.pairsSupported=void 0===config.pairsSupported||config.pairsSupported},igv.Ga4ghAlignmentReader.prototype.readAlignments=function(chr,bpStart,bpEnd){var self=this;return new Promise(function(fulfill,reject){function getChrAliasTable(){return self.chrAliasTable?Promise.resolve(self.chrAliasTable):new Promise(function(fulfill,reject){self.readMetadata().then(function(json){if(self.chrAliasTable={},igv.browser&&json.readGroups&&json.readGroups.length>0){var referenceSetId=json.readGroups[0].referenceSetId;if(console.log("No reference set specified"),referenceSetId){var readURL=self.url+"/references/search";igv.ga4ghSearch({url:readURL,body:{referenceSetId:referenceSetId},decode:function(j){return j.references}}).then(function(references){references.forEach(function(ref){var refName=ref.name,alias=igv.browser.genome.getChromosomeName(refName);self.chrAliasTable[alias]=refName}),fulfill(self.chrAliasTable)}).catch(reject)}else populateChrAliasTable(self.chrAliasTable,self.config.datasetId),fulfill(self.chrAliasTable)}else fulfill(self.chrAliasTable)}).catch(reject)})}function decodeGa4ghReads(json){function encodeCigar(cigarArray){var cigarString="";return cigarArray.forEach(function(cigarUnit){var op=CigarOperationTable[cigarUnit.operation],len=cigarUnit.operationLength;cigarString+=len+op}),cigarString}function encodeFlags(json){return 0}function translateCigar(cigar){var cigarUnit,opLen,opLtr,i,lengthOnRef=0,cigarArray=[];for(i=0;i<cigar.length;i++)cigarUnit=cigar[i],opLtr=CigarOperationTable[cigarUnit.operation],opLen=parseInt(cigarUnit.operationLength),"M"!==opLtr&&"EQ"!==opLtr&&"X"!==opLtr&&"D"!==opLtr&&"N"!==opLtr&&"="!==opLtr||(lengthOnRef+=opLen),cigarArray.push({len:opLen,ltr:opLtr});return{lengthOnRef:lengthOnRef,array:cigarArray}}function makeBlocks(record,cigarArray){for(var insertions,blockSeq,gapType,blockQuals,blocks=[],seqOffset=0,pos=record.start,len=cigarArray.length,i=0;i<len;i++){var c=cigarArray[i];switch(c.ltr){case"H":break;case"P":break;case"S":seqOffset+=c.len,gapType="S";break;case"N":pos+=c.len,gapType="N";break;case"D":pos+=c.len,gapType="D";break;case"I":blockSeq="*"===record.seq?"*":record.seq.substr(seqOffset,c.len),blockQuals=record.qual?record.qual.slice(seqOffset,c.len):void 0,void 0===insertions&&(insertions=[]),insertions.push({start:pos,len:c.len,seq:blockSeq,qual:blockQuals}),seqOffset+=c.len;break;case"M":case"EQ":case"=":case"X":blockSeq="*"===record.seq?"*":record.seq.substr(seqOffset,c.len),blockQuals=record.qual?record.qual.slice(seqOffset,c.len):void 0,blocks.push({start:pos,len:c.len,seq:blockSeq,qual:blockQuals,gapType:gapType}),seqOffset+=c.len,pos+=c.len;break;default:console.log("Error processing cigar element: "+c.len+c.ltr)}}return{blocks:blocks,insertions:insertions}}var i,json,alignment,jsonAlignment,cigarDecoded,mate,jsonRecords=json.alignments,len=jsonRecords.length,alignments=[],genome=igv.browser.genome;for(i=0;i<len;i++)json=jsonRecords[i],alignment=new igv.BamAlignment,alignment.readName=json.fragmentName,alignment.properPlacement=json.properPlacement,alignment.duplicateFragment=json.duplicateFragment,alignment.numberReads=json.numberReads,alignment.fragmentLength=json.fragmentLength,alignment.readNumber=json.readNumber,alignment.failedVendorQualityChecks=json.failedVendorQualityChecks,alignment.secondaryAlignment=json.secondaryAlignment,alignment.supplementaryAlignment=json.supplementaryAlignment,alignment.seq=json.alignedSequence,alignment.qual=json.alignedQuality,alignment.matePos=json.nextMatePosition,alignment.tagDict=json.info,alignment.flags=encodeFlags(json),jsonAlignment=json.alignment,jsonAlignment?(alignment.mapped=!0,alignment.chr=json.alignment.position.referenceName,genome&&(alignment.chr=genome.getChromosomeName(alignment.chr)),alignment.start=parseInt(json.alignment.position.position),alignment.strand=!json.alignment.position.reverseStrand,alignment.mq=json.alignment.mappingQuality,alignment.cigar=encodeCigar(json.alignment.cigar),cigarDecoded=translateCigar(json.alignment.cigar),alignment.lengthOnRef=cigarDecoded.lengthOnRef,blocks=makeBlocks(alignment,cigarDecoded.array),alignment.blocks=blocks.blocks,alignment.insertions=blocks.insertions):alignment.mapped=!1,mate=json.nextMatePosition,mate&&(alignment.mate={chr:mate.referenceFrame,position:parseInt(mate.position),strand:!mate.reverseStrand}),self.filter.pass(alignment)&&alignments.push(alignment);return alignments}getChrAliasTable().then(function(chrAliasTable){var queryChr=chrAliasTable.hasOwnProperty(chr)?chrAliasTable[chr]:chr,readURL=self.url+"/reads/search";igv.ga4ghSearch({url:readURL,body:{readGroupSetIds:[self.readGroupSetIds],referenceName:queryChr,start:bpStart,end:bpEnd,pageSize:"10000"},decode:decodeGa4ghReads,results:new igv.AlignmentContainer(chr,bpStart,bpEnd,self.samplingWindowSize,self.samplingDepth,self.pairsSupported)}).then(fulfill).catch(reject)}).catch(reject)})},igv.Ga4ghAlignmentReader.prototype.readMetadata=function(){return igv.ga4ghGet({url:this.url,entity:"readgroupsets",entityId:this.readGroupSetIds})},igv.decodeGa4ghReadset=function(json){var sequenceNames=[],fileData=json.fileData;return fileData.forEach(function(fileObject){var refSequences=fileObject.refSequences;refSequences.forEach(function(refSequence){sequenceNames.push(refSequence.name)})}),sequenceNames},igv}(igv||{}),igv=function(igv){function ga4ghHeaders(){var headers={},acToken=oauth.google.access_token;return headers["Cache-Control"]="no-cache",acToken&&(headers.Authorization="Bearer "+acToken),headers}return igv.ga4ghGet=function(options){var url=options.url+"/"+options.entity+"/"+options.entityId;return igv.xhr.loadJson(url,options)},igv.ga4ghSearch=function(options){return new Promise(function(fulfill,reject){function loadChunk(pageToken){pageToken?body.pageToken=pageToken:void 0!=body.pageToken&&delete body.pageToken;var sendData=JSON.stringify(body);igv.xhr.loadJson(url,{sendData:sendData,contentType:"application/json",headers:ga4ghHeaders()}).then(function(json){var nextPageToken,tmp;json?(tmp=decode?decode(json):json,tmp&&tmp.forEach(function(a){var keep=!0;keep&&results.push(a)}),nextPageToken=json.nextPageToken,nextPageToken?loadChunk(nextPageToken):fulfill(results)):fulfill(results)}).catch(function(error){reject(error)})}var results=options.results?options.results:[],url=options.url,body=options.body,decode=options.decode,apiKey=oauth.google.apiKey,paramSeparator="?",fields=options.fields;apiKey&&(url=url+paramSeparator+"key="+apiKey,paramSeparator="&"),fields&&(url=url+paramSeparator+"fields="+fields),loadChunk()})},igv.ga4ghSearchReadGroupSets=function(options){igv.ga4ghSearch({url:options.url+"/readgroupsets/search",body:{datasetIds:[options.datasetId],pageSize:"10000"},decode:function(json){return json.readGroupSets}}).then(function(results){options.success(results)}).catch(function(error){console.log(error)})},igv.ga4ghSearchVariantSets=function(options){igv.ga4ghSearch({url:options.url+"/variantsets/search",body:{datasetIds:[options.datasetId],pageSize:"10000"},decode:function(json){return json.variantSets}}).then(function(results){options.success(results)}).catch(function(error){console.log(error)})},igv.ga4ghSearchCallSets=function(options){options.datasetId?igv.ga4ghSearchVariantSets({url:options.url,datasetId:options.datasetId,success:function(results){var variantSetIds=[];results.forEach(function(vs){variantSetIds.push(vs.id)}),options.datasetId=void 0,options.variantSetIds=variantSetIds,igv.ga4ghSearchCallSets(options)}}):igv.ga4ghSearch({url:options.url+"/callsets/search",body:{variantSetIds:options.variantSetIds,pageSize:"10000"},decode:function(json){return json.callSets&&json.callSets.forEach(function(cs){cs.variantSetIds=options.variantSetIds}),json.callSets}}).then(function(results){options.success(results)}).catch(function(error){console.log(error)})},igv.ga4ghSearchReadAndCallSets=function(options){igv.ga4ghSearchReadGroupSets({url:options.url,datasetId:options.datasetId,success:function(readGroupSets){igv.ga4ghSearchCallSets({url:options.url,datasetId:options.datasetId,success:function(callSets){var csHash={};callSets.forEach(function(cs){csHash[cs.name]=cs});var mergedResults=[];readGroupSets.forEach(function(rg){var m={readGroupSetId:rg.id,name:rg.name,datasetId:options.datasetId},cs=csHash[rg.name];cs&&(m.callSetId=cs.id,m.variantSetIds=cs.variantSetIds),mergedResults.push(m)}),options.success(mergedResults)}})}})},igv}(igv||{}),igv=function(igv){return igv.Ga4ghVariantReader=function(config){this.config=config,this.url=config.url,this.variantSetId=config.variantSetId,this.callSetIds=config.callSetIds,this.includeCalls=void 0===config.includeCalls||config.includeCalls},igv.Ga4ghVariantReader.prototype.readHeader=function(){var self=this;return new Promise(function(fulfill,reject){if(self.header)fulfill(self.header);else if(self.header={},self.includeCalls===!1)fulfill(self.header);else{var readURL=self.url+"/callsets/search";igv.ga4ghSearch({url:readURL,fields:"nextPageToken,callSets(id,name)",body:{variantSetIds:Array.isArray(self.variantSetId)?self.variantSetId:[self.variantSetId],pageSize:"10000"},decode:function(json){if(self.callSetIds){var filteredCallSets=[],csIdSet=new Set;return self.callSetIds.forEach(function(csid){csIdSet.add(csid)}),json.callSets.forEach(function(cs){csIdSet.has(cs.id)&&filteredCallSets.push(cs)}),filteredCallSets}return json.callSets}}).then(function(callSets){self.header.callSets=callSets,fulfill(self.header)}).catch(reject)}})},igv.Ga4ghVariantReader.prototype.readFeatures=function(chr,bpStart,bpEnd){function getChrAliasTable(){return new Promise(function(fulfill,reject){self.chrAliasTable?fulfill(self.chrAliasTable):self.readMetadata().then(function(json){self.metadata=json.metadata,self.chrAliasTable={},json.referenceBounds&&igv.browser&&json.referenceBounds.forEach(function(rb){var refName=rb.referenceName,alias=igv.browser.genome.getChromosomeName(refName);self.chrAliasTable[alias]=refName}),fulfill(self.chrAliasTable)})})}var self=this;return new Promise(function(fulfill,reject){self.readHeader().then(function(header){getChrAliasTable().then(function(chrAliasTable){var queryChr=chrAliasTable.hasOwnProperty(chr)?chrAliasTable[chr]:chr,readURL=self.url+"/variants/search";igv.ga4ghSearch({url:readURL,fields:self.includeCalls?void 0:"nextPageToken,variants(id,variantSetId,names,referenceName,start,end,referenceBases,alternateBases,quality, filter, info)",body:{variantSetIds:Array.isArray(self.variantSetId)?self.variantSetId:[self.variantSetId],callSetIds:self.callSetIds?self.callSetIds:void 0,referenceName:queryChr,start:bpStart.toString(),end:bpEnd.toString(),pageSize:"10000"},decode:function(json){var variants=[];return json.variants.forEach(function(json){variants.push(igv.createGAVariant(json))}),variants}}).then(fulfill).catch(reject)}).catch(reject)}).catch(reject)})},igv.Ga4ghVariantReader.prototype.readMetadata=function(){return igv.ga4ghGet({url:this.url,entity:"variantsets",entityId:this.variantSetId})},igv}(igv||{}),igv=function(igv){return igv.Google={isGoogleURL:function(url){return url.includes("googleapis")},translateGoogleCloudURL:function(gsUrl){var i,bucket,object,qIdx,objectString,paramString;return i=gsUrl.indexOf("/",5),qIdx=gsUrl.indexOf("?"),i<0?(console.log("Invalid gs url: "+gsUrl),gsUrl):(bucket=gsUrl.substring(5,i),objectString=qIdx<0?gsUrl.substring(i+1):gsUrl.substring(i+1,qIdx),object=encodeURIComponent(objectString),qIdx>0&&(paramString=gsUrl.substring(qIdx)),"https://www.googleapis.com/storage/v1/b/"+bucket+"/o/"+object+(paramString?paramString+"&alt=media":"?alt=media"))},addGoogleHeaders:function(headers){headers["Cache-Control"]="no-cache";var acToken=oauth.google.access_token;return acToken&&!headers.hasOwnProperty("Authorization")&&(headers.Authorization="Bearer "+acToken),headers},addApiKey:function(url){var apiKey=oauth.google.apiKey,paramSeparator=url.includes("?")?"&":"?";return void 0===apiKey||url.includes("key=")||apiKey&&(url=url+paramSeparator+"key="+apiKey),url},driveDownloadURL:function(link){var i1,i2,id;return link.includes("/open?id=")?(i1=link.indexOf("/open?id=")+9,i2=link.indexOf("&"),i1>0&&i2>i1?id=link.substring(i1,i2):i1>0&&(id=link.substring(i1))):link.includes("/file/d/")&&(i1=link.indexOf("/file/d/")+8,i2=link.lastIndexOf("/"),id=link.substring(i1,i2)),id?"https://www.googleapis.com/drive/v3/files/"+id+"?alt=media":link}},igv}(igv||{}),igv=function(igv){function loadCytobands(cytobandUrl,config){return igv.xhr.loadString(cytobandUrl,igv.buildOptions(config)).then(function(data){for(var lastChr,bands=[],n=0,c=1,lines=data.splitLines(),len=lines.length,cytobands={},i=0;i<len;i++){var tokens=lines[i].split("\t"),chr=tokens[0];if(lastChr||(lastChr=chr),chr!=lastChr&&(cytobands[lastChr]=bands,bands=[],lastChr=chr,n=0,c++),5==tokens.length){var chr=tokens[0],start=parseInt(tokens[1]),end=parseInt(tokens[2]),name=tokens[3],stain=tokens[4];bands[n++]=new igv.Cytoband(start,end,name,stain)}}return cytobands})}function loadAliases(aliasURL,config){igv.xhr.loadString(aliasURL,igv.buildOptions(config)).then(function(data){var lines=data.splitLines(),aliases=[];return lines.forEach(function(line){!line.startsWith("#")&line.length>0&&aliases.push(line.split("\t"))}),aliases})}function constructWG(genome){var l,lengths,mean,threshold;genome.wgChromosomeNames=[],genome.ideograms?genome.chromosomeNames.forEach(function(chrName){var ideo=genome.ideograms[chrName];ideo&&ideo.length>0&&genome.wgChromosomeNames.push(chrName)}):(lengths=Object.keys(genome.chromosomes).map(function(key){return genome.chromosomes[key].bpLength}),mean=igv.Math.mean(lengths),threshold=mean/50,genome.wgChromosomeNames=genome.chromosomeNames.filter(function(key){return genome.chromosomes[key].bpLength>threshold})),l=0,genome.wgChromosomeNames.forEach(function(key){l+=genome.chromosomes[key].bpLength}),genome.chromosomes.all={name:"all",bpLength:l}}return igv.loadGenome=function(reference){var cytobands,chrNames,sequence,cytobandUrl=reference.cytobandURL,aliasURL=reference.aliasURL,chromosomes={};return sequence=new igv.FastaSequence(reference),sequence.init().then(function(){chrNames=sequence.chromosomeNames,chromosomes=sequence.chromosomes}).then(function(ignore){return cytobandUrl?loadCytobands(cytobandUrl,sequence.config):void 0}).then(function(c){return cytobands=c,aliasURL?loadAliases(aliasURL,sequence.config):void 0}).then(function(aliases){return new igv.Genome(reference.id,sequence,cytobands,aliases)})},igv.Genome=function(id,sequence,ideograms,aliases){this.id=id,this.sequence=sequence,this.chromosomeNames=sequence.chromosomeNames,this.chromosomes=sequence.chromosomes,this.ideograms=ideograms,constructWG(this);var chrAliasTable={},self=this;this.chromosomeNames.forEach(function(name){var alias=name.startsWith("chr")?name.substring(3):"chr"+name;chrAliasTable[alias]=name,"chrM"===name&&(chrAliasTable.MT="chrM"),"MT"===name&&(chrAliasTable.chrM="MT")}),aliases&&aliases.forEach(function(array){var defName,i;for(i=0;i<array.length;i++)if(self.chromosomes[array[i]]){defName=array[i];break}defName&&array.forEach(function(alias){alias!==defName&&(chrAliasTable[alias]=defName)})}),this.chrAliasTable=chrAliasTable},igv.Genome.prototype.getChromosomeName=function(str){var chr=this.chrAliasTable[str];return chr?chr:str},igv.Genome.prototype.getChromosome=function(chr){return chr=this.getChromosomeName(chr),this.chromosomes[chr]},igv.Genome.prototype.getCytobands=function(chr){return this.ideograms?this.ideograms[chr]:null},igv.Genome.prototype.getLongestChromosome=function(){var longestChr,key,chromosomes=this.chromosomes;for(key in chromosomes){if(chromosomes.hasOwnProperty(key)){var chr=chromosomes[key];(void 0===longestChr||chr.bpLength>longestChr.bpLength)&&(longestChr=chr)}return longestChr}},igv.Genome.prototype.getChromosomes=function(){return this.chromosomes},igv.Genome.prototype.getGenomeCoordinate=function(chr,bp){var offset=this.getCumulativeOffset(chr);if(void 0!==offset)return offset+bp},igv.Genome.prototype.getChromosomeCoordinate=function(genomeCoordinate){var lastChr,lastCoord,i,name,cumulativeOffset,self=this;for(void 0===this.cumulativeOffsets&&computeCumulativeOffsets.call(this),i=0;i<this.wgChromosomeNames.length;i++){if(name=this.wgChromosomeNames[i],cumulativeOffset=self.cumulativeOffsets[name],cumulativeOffset>genomeCoordinate){var position=genomeCoordinate-lastCoord;return{chr:lastChr,position:position}}lastChr=name,lastCoord=cumulativeOffset}return{chr:_.last(this.chromosomeNames),position:0}},igv.Genome.prototype.getCumulativeOffset=function(chr){function computeCumulativeOffsets(){var cumulativeOffsets={},offset=0;self.wgChromosomeNames.forEach(function(name){cumulativeOffsets[name]=Math.floor(offset);var chromosome=self.getChromosome(name);offset+=chromosome.bpLength}),self.cumulativeOffsets=cumulativeOffsets}var self=this,queryChr=this.getChromosomeName(chr);return void 0===this.cumulativeOffsets&&computeCumulativeOffsets.call(this),this.cumulativeOffsets[queryChr]},igv.Genome.prototype.getGenomeLength=function(){var lastChr;return lastChr=_.last(this.wgChromosomeNames),this.getCumulativeOffset(lastChr)+this.getChromosome(lastChr).bpLength},igv.Chromosome=function(name,order,bpLength){this.name=name,this.order=order,this.bpLength=bpLength},igv.Cytoband=function(start,end,name,typestain){this.start=start,this.end=end,this.name=name,this.stain=0,"acen"==typestain?this.type="c":(this.type=typestain.charAt(1),"p"==this.type&&(this.stain=parseInt(typestain.substring(4))))},igv.GenomicInterval=function(chr,start,end,features){this.chr=chr,this.start=start,this.end=end,this.features=features},igv.GenomicInterval.prototype.contains=function(chr,start,end){return this.chr==chr&&this.start<=start&&this.end>=end},igv.GenomicInterval.prototype.containsRange=function(range){return this.chr===range.chr&&this.start<=range.start&&this.end>=range.end},igv.Genome.KnownGenomes={hg18:{fastaURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg18/hg18.fasta",cytobandURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg18/cytoBand.txt.gz"},GRCh38:{fastaURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg38/hg38.fa",cytobandURL:"https://s3.amazonaws.com/igv.broadinstitute.org/annotations/hg38/cytoBandIdeo.txt"},hg38:{fastaURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg38/hg38.fa",cytobandURL:"https://s3.amazonaws.com/igv.broadinstitute.org/annotations/hg38/cytoBandIdeo.txt"},hg19:{fastaURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg19/hg19.fasta",cytobandURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg19/cytoBand.txt"},GRCh37:{fastaURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg19/hg19.fasta",cytobandURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg19/cytoBand.txt"},mm10:{fastaURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/mm10/mm10.fa",indexURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/mm10/mm10.fa.fai",cytobandURL:"https://s3.amazonaws.com/igv.broadinstitute.org/annotations/mm10/cytoBandIdeo.txt.gz"},GRCm38:{fastaURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/mm10/mm10.fa",indexURL:"https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/mm10/mm10.fa.fai",cytobandURL:"https://s3.amazonaws.com/igv.broadinstitute.org/annotations/mm10/cytoBandIdeo.txt.gz"}},igv}(igv||{}),igv=function(igv){function selectedFeature(feature,source){console.log(feature+" "+source);var type="gtex"===source?"snp":"gene";this.selection=new GtexSelection("gene"==type?{gene:feature}:{snp:feature}),igv.browser.update()}igv.EqtlTrack=function(config){var url=config.url,label=config.name;this.config=config,this.url=url,this.name=label,this.pValueField=config.pValueField||"pValue",this.geneField=config.geneField||"geneName",this.minLogP=config.minLogP||3.5,this.maxLogP=config.maxLogP||25,this.background=config.background,this.divider=config.divider||"rgb(225,225,225)",this.dotSize=config.dotSize||2,this.height=config.height||100,this.autoHeight=!1,this.disableButtons=config.disableButtons,this.visibilityWindow=config.visibilityWindow,this.featureSource=new igv.FeatureSource(config),this.onsearch=function(feature,source){selectedFeature.call(this,feature,source)}},igv.EqtlTrack.prototype.paintAxis=function(ctx,pixelWidth,pixelHeight){var track=this,yScale=(track.maxLogP-track.minLogP)/pixelHeight,font={font:"normal 10px Arial",textAlign:"right",strokeStyle:"black"};igv.graphics.fillRect(ctx,0,0,pixelWidth,pixelHeight,{fillStyle:"rgb(255, 255, 255)"});for(var p=4;p<=track.maxLogP;p+=2){var x1,x2,y1,y2,ref;ref=.85*pixelWidth,x1=ref-5,x2=ref,y1=y2=pixelHeight-Math.round((p-track.minLogP)/yScale),igv.graphics.strokeLine(ctx,x1,y1,x2,y2,font),igv.graphics.fillText(ctx,p,x1-1,y1+2,font)}font.textAlign="center",igv.graphics.fillText(ctx,"-log10(pvalue)",pixelWidth/4,pixelHeight/2,font,{rotate:{angle:-90}})},igv.EqtlTrack.prototype.getFeatures=function(chr,bpStart,bpEnd){return this.featureSource.getFeatures(chr,bpStart,bpEnd)},igv.EqtlTrack.prototype.draw=function(options){function drawEqtls(drawSelected){var eqtl,i,px,py,color,isSelected,snp,geneName,selection,radius=drawSelected?2*track.dotSize:track.dotSize;for(igv.graphics.setProperties(ctx,{fillStyle:"rgb(180, 180, 180)",strokeStyle:"rgb(180, 180, 180)"}),i=0;i<len;i++)if(eqtl=featureList[i],snp=eqtl.snp.toUpperCase(),geneName=eqtl[track.geneField].toUpperCase(),selection=options.genomicState.selection,isSelected=selection&&(selection.snp===snp||selection.gene===geneName),(!drawSelected||isSelected)&&(selection&&selection.snp===snp&&selection.addGene(geneName),drawSelected&&selection&&(color=selection.colorForGene(geneName)),!(drawSelected&&void 0===color||(px=Math.round(eqtl.position-bpStart+.5)/bpPerPixel,px<0)))){if(px>pixelWidth)break;var mLogP=-Math.log(eqtl[track.pValueField])/Math.LN10;mLogP<track.minLogP||(py=Math.max(0+radius,pixelHeight-Math.round((mLogP-track.minLogP)/yScale)),eqtl.px=px,eqtl.py=py,color&&igv.graphics.setProperties(ctx,{fillStyle:color,strokeStyle:"black"}),igv.graphics.fillCircle(ctx,px,py,radius),igv.graphics.strokeCircle(ctx,px,py,radius))}}var track=this,featureList=options.features,ctx=options.context,bpPerPixel=options.bpPerPixel,bpStart=options.bpStart,pixelWidth=options.pixelWidth,pixelHeight=options.pixelHeight,yScale=(track.maxLogP-track.minLogP)/pixelHeight;if(this.background&&igv.graphics.fillRect(ctx,0,0,pixelWidth,pixelHeight,{fillStyle:this.background}),igv.graphics.strokeLine(ctx,0,pixelHeight-1,pixelWidth,pixelHeight-1,{strokeStyle:this.divider}),ctx){var len=featureList.length;ctx.save(),drawEqtls(!1),drawEqtls(!0),ctx.restore()}},igv.EqtlTrack.prototype.popupDataWithConfiguration=function(config){return this.popupData(config.genomicLocation,config.x,config.y,config.viewport.genomicState.referenceFrame)},igv.EqtlTrack.prototype.popupData=function(genomicLocation,xOffset,yOffset,referenceFrame){if(this.featureSource.featureCache){var chr=referenceFrame.chrName,tolerance=2*this.dotSize*referenceFrame.bpPerPixel,featureList=this.featureSource.featureCache.queryFeatures(chr,genomicLocation-tolerance,genomicLocation+tolerance),dotSize=this.dotSize,tissue=this.name;if(featureList&&featureList.length>0){var popupData=[];return featureList.forEach(function(feature){feature.end>=genomicLocation-tolerance&&feature.start<=genomicLocation+tolerance&&feature.py-yOffset<2*dotSize&&(popupData.length>0&&popupData.push("<hr>"),popupData.push({name:"snp id",value:feature.snp},{name:"gene id",value:feature.geneId},{name:"gene name",value:feature.geneName},{name:"p value",value:feature.pValue},{name:"tissue",value:tissue}))}),popupData}}},GtexSelection=function(selection){this.geneColors={},this.gene=null,this.snp=null,this.genesCount=0,selection.gene&&(this.gene=selection.gene.toUpperCase(),this.geneColors[this.gene]=brewer[this.genesCount++]),selection.snp&&(this.snp=selection.snp.toUpperCase())},GtexSelection.prototype.addGene=function(geneName){this.geneColors[geneName.toUpperCase()]||(this.geneColors[geneName.toUpperCase()]=brewer[this.genesCount++])},GtexSelection.prototype.colorForGene=function(geneName){return this.geneColors[geneName.toUpperCase()]};var brewer=new Array;return brewer.push("rgb(228,26,28)"),brewer.push("rgb(55,126,184)"),brewer.push("rgb(77,175,74)"),brewer.push("rgb(166,86,40)"),brewer.push("rgb(152,78,163)"),brewer.push("rgb(255,127,0)"),brewer.push("rgb(247,129,191)"),brewer.push("rgb(153,153,153)"),brewer.push("rgb(255,255,51)"),brewer.push("rgb(102, 194, 165"),brewer.push("rgb(252, 141, 98"),brewer.push("rgb(141, 160, 203"),brewer.push("rgb(231, 138, 195"),brewer.push("rgb(166, 216, 84"),brewer.push("rgb(255, 217, 47"),brewer.push("rgb(229, 196, 148"),brewer.push("rgb(179, 179, 179"),brewer.push("rgb( 141, 211, 199"),brewer.push("rgb(255, 255, 179"),brewer.push("rgb(190, 186, 218"),brewer.push("rgb(251, 128, 114"),brewer.push("rgb(128, 177, 211"),brewer.push("rgb(253, 180, 98"),brewer.push("rgb(179, 222, 105"),brewer.push("rgb(252, 205, 229"),brewer.push("rgb(217, 217, 217"),brewer.push("rgb(188, 128, 189"),brewer.push("rgb(204, 235, 197"),brewer.push("rgb(255, 237, 111"),igv}(igv||{}),igv=function(igv){igv.GtexSelection=function(selection){this.geneColors={},this.gene=null,this.snp=null,this.genesCount=0,selection.gene&&(this.gene=selection.gene.toUpperCase(),this.geneColors[this.gene]=brewer[this.genesCount++]),selection.snp&&(this.snp=selection.snp.toUpperCase())},igv.GtexSelection.prototype.addGene=function(geneName){this.geneColors[geneName.toUpperCase()]||(this.geneColors[geneName.toUpperCase()]=brewer[this.genesCount++])},igv.GtexSelection.prototype.colorForGene=function(geneName){return this.geneColors[geneName.toUpperCase()]};var brewer=new Array;return brewer.push("rgb(228,26,28)"),brewer.push("rgb(55,126,184)"),brewer.push("rgb(77,175,74)"),brewer.push("rgb(166,86,40)"),brewer.push("rgb(152,78,163)"),brewer.push("rgb(255,127,0)"),brewer.push("rgb(247,129,191)"),brewer.push("rgb(153,153,153)"),brewer.push("rgb(255,255,51)"),brewer.push("rgb(102, 194, 165"),brewer.push("rgb(252, 141, 98"),brewer.push("rgb(141, 160, 203"),brewer.push("rgb(231, 138, 195"),brewer.push("rgb(166, 216, 84"),brewer.push("rgb(255, 217, 47"),brewer.push("rgb(229, 196, 148"),brewer.push("rgb(179, 179, 179"),brewer.push("rgb( 141, 211, 199"),brewer.push("rgb(255, 255, 179"),brewer.push("rgb(190, 186, 218"),brewer.push("rgb(251, 128, 114"),brewer.push("rgb(128, 177, 211"),brewer.push("rgb(253, 180, 98"),brewer.push("rgb(179, 222, 105"),brewer.push("rgb(252, 205, 229"),brewer.push("rgb(217, 217, 217"),brewer.push("rgb(188, 128, 189"),brewer.push("rgb(204, 235, 197"),brewer.push("rgb(255, 237, 111"),igv}(igv||{}),igv=function(igv){igv.GtexFileReader=function(config){this.config=config,this.file=config.url,this.codec=this.file.endsWith(".bin")?createEqtlBinary:createEQTL,this.cache={},this.binary=this.file.endsWith(".bin"),this.compressed=this.file.endsWith(".compressed.bin")},igv.GtexFileReader.prototype.readFeatures=function(chr,bpStart,bpEnd){var self=this;return new Promise(function(fulfill,reject){function loadWithIndex(index,chr,fulfill){var chrIdx=index[chr];if(chrIdx){var blocks=chrIdx.blocks,lastBlock=blocks[blocks.length-1],endPos=lastBlock.startPos+lastBlock.size,len=endPos-blocks[0].startPos,range={start:blocks[0].startPos,size:len};igv.xhr.loadArrayBuffer(file,{range:range,withCredentials:self.config.withCredentials}).then(function(arrayBuffer){if(arrayBuffer){var data=new DataView(arrayBuffer),parser=new igv.BinaryParser(data),featureList=[];for(parser.offset;parser.hasNext();){var feature=createEqtlBinary(parser);featureList.push(feature)}fulfill(featureList)}else fulfill(null);
+}).catch(reject)}else fulfill([]);var createEqtlBinary=function(parser){var snp=parser.getString(),chr=parser.getString(),position=parser.getInt(),geneId=parser.getString(),geneName=parser.getString(),pValue=parser.getFloat();return new Eqtl(snp,chr,position,geneId,geneName,pValue)}}function loadIndex(url,fulfill){var genome=igv.browser?igv.browser.genome:null;igv.xhr.loadArrayBuffer(url,{range:{start:0,size:200},withCredentials:self.config.withCredentials}).then(function(arrayBuffer){var data=new DataView(arrayBuffer),parser=new igv.BinaryParser(data),indexPosition=(parser.getInt(),parser.getInt(),parser.getLong()),indexSize=parser.getInt();igv.xhr.loadArrayBuffer(url,{range:{start:indexPosition,size:indexSize},withCredentials:self.config.withCredentials}).then(function(arrayBuffer2){for(var data2=new DataView(arrayBuffer2),index=null,parser=new igv.BinaryParser(data2),index={},nChrs=parser.getInt();nChrs-- >0;){var chr=parser.getString();genome&&(chr=genome.getChromosomeName(chr));var position=parser.getLong(),size=parser.getInt(),blocks=new Array;blocks.push(new Block(position,size)),index[chr]=new ChrIdx(chr,blocks)}fulfill(index)})})}function Eqtl(snp,chr,position,geneId,geneName,pValue){this.snp=snp,this.chr=chr,this.position=position,this.start=position,this.end=position+1,this.geneId=geneId,this.geneName=geneName,this.pValue=pValue}var file=self.file,index=self.index;index?loadWithIndex(index,chr,fulfill):loadIndex(self.file,function(index){self.index=index,loadWithIndex(index,chr,fulfill)}),Eqtl.prototype.description=function(){return"<b>snp</b>:&nbsp"+this.snp+"<br/><b>location</b>:&nbsp"+this.chr+":"+formatNumber(this.position+1)+"<br/><b>gene</b>:&nbsp"+this.geneName+"<br/><b>pValue</b>:&nbsp"+this.pValue+"<br/><b>mLogP</b>:&nbsp"+this.mLogP},Block=function(startPos,size){this.startPos=startPos,this.size=size},ChrIdx=function(chr,blocks){this.chr=chr,this.blocks=blocks}})};var createEQTL=function(tokens){var snp=tokens[0],chr=tokens[1],position=parseInt(tokens[2])-1,geneId=tokens[3],geneName=tokens[4],genePosition=tokens[5],fStat=parseFloat(tokens[6]),pValue=parseFloat(tokens[7]);return new Eqtl(snp,chr,position,geneId,geneName,genePosition,fStat,pValue)},createEqtlBinary=function(parser){var snp=parser.getString(),chr=parser.getString(),position=parser.getInt(),geneId=parser.getString(),geneName=parser.getString(),pValue=parser.getFloat();return new Eqtl(snp,chr,position,geneId,geneName,pValue)};return igv}(igv||{}),igv=function(igv){return igv.GtexReader=function(config){this.config=config,this.url=config.url,this.tissueName=config.tissueName,this.indexed=!0},igv.GtexReader.prototype.readFeatures=function(chr,bpStart,bpEnd){var self=this,queryChr=chr.startsWith("chr")?chr.substr(3):chr,queryStart=Math.floor(bpStart),queryEnd=Math.ceil(bpEnd),queryURL=this.url+"?chromosome="+queryChr+"&start="+queryStart+"&end="+queryEnd+"&tissueName="+this.tissueName;return new Promise(function(fulfill,reject){igv.xhr.loadJson(queryURL,{withCredentials:self.config.withCredentials}).then(function(json){json&&json.singleTissueEqtl?(json.singleTissueEqtl.forEach(function(eqtl){eqtl.chr="chr"+eqtl.chromosome,eqtl.position=eqtl.start,eqtl.start=eqtl.start-1,eqtl.snp=eqtl.snpId,eqtl.geneName=eqtl.geneSymbol,eqtl.geneId=eqtl.gencodeId,eqtl.end=eqtl.start}),fulfill(json.singleTissueEqtl)):fulfill(null)}).catch(reject)})},igv}(igv||{}),igv=function(igv){return igv.ImmVarReader=function(config){this.config=config,this.url=config.url,this.cellConditionId=config.cellConditionId,this.valueThreshold=config.valueThreshold?config.valueThreshold:.05},igv.ImmVarReader.prototype.readFeatures=function(queryChr,queryStart,queryEnd){var self=this,queryURL=this.url+"?chromosome="+queryChr+"&start="+queryStart+"&end="+queryEnd+"&cell_condition_id="+this.cellConditionId;return new Promise(function(fulfill,reject){igv.xhr.loadJson(queryURL,{withCredentials:self.config.withCredentials}).then(function(json){json?(json.eqtls.forEach(function(eqtl){eqtl.chr=eqtl.chromosome,eqtl.start=eqtl.position,eqtl.end=eqtl.position+1}),fulfill(json.eqtls)):fulfill(null)}).catch(function(error){reject(error)})})},igv}(igv||{}),igv=function(igv){const DEFAULT_POPOVER_WINDOW=1e8;return igv.GWASTrack=function(config){this.config=config,this.url=config.url,this.name=config.name,this.trait=config.trait,this.height=config.height||100,this.minLogP=config.minLogP||0,this.maxLogP=config.maxLogP||15,this.background=config.background,this.divider=config.divider||"rgb(225,225,225)",this.dotSize=config.dotSize||4,this.popoverWindow=void 0===config.popoverWindow?DEFAULT_POPOVER_WINDOW:config.popoverWindow,this.description=config.description,this.proxy=config.proxy,this.portalURL=config.portalURL?config.portalURL:window.location.origin,this.variantURL=config.variantURL||"http://www.type2diabetesgenetics.org/variant/variantInfo/",this.traitURL=config.traitURL||"http://www.type2diabetesgenetics.org/trait/traitInfo/";var cs=config.colorScale||{thresholds:[5e-8,5e-4,.5],colors:["rgb(255,50,50)","rgb(251,100,100)","rgb(251,170,170)","rgb(227,238,249)"]};this.pvalue=config.pvalue?config.pvalue:"PVALUE",this.colorScale=new igv.BinnedColorScale(cs),config.format&&"gtexGWAS"===config.format?this.featureSource=new igv.FeatureSource(config):this.featureSource=new igv.T2DVariantSource(config)},igv.GWASTrack.prototype.getFeatures=function(chr,bpStart,bpEnd){return this.featureSource.getFeatures(chr,bpStart,bpEnd)},igv.GWASTrack.prototype.draw=function(options){var track=this,featureList=options.features,ctx=options.context,bpPerPixel=options.bpPerPixel,bpStart=options.bpStart,pixelWidth=options.pixelWidth,pixelHeight=options.pixelHeight,bpEnd=bpStart+pixelWidth*bpPerPixel+1,yScale=(track.maxLogP-track.minLogP)/pixelHeight,enablePopover=bpEnd-bpStart<DEFAULT_POPOVER_WINDOW;enablePopover?this.po=[]:this.po=void 0,this.background&&igv.graphics.fillRect(ctx,0,0,pixelWidth,pixelHeight,{fillStyle:this.background}),igv.graphics.strokeLine(ctx,0,pixelHeight-1,pixelWidth,pixelHeight-1,{strokeStyle:this.divider});var variant,pos,len,xScale,px,py,color,pvalue,val;if(featureList){len=featureList.length;for(var i=0;i<len;i++)if(variant=featureList[i],pos=variant.start,!(pos<bpStart)){if(pos>bpEnd)break;pvalue=variant.pvalue||variant[track.pvalue],pvalue&&(color=track.colorScale.getColor(pvalue),val=-Math.log(pvalue)/2.302585092994046,xScale=bpPerPixel,px=Math.round((pos-bpStart)/xScale),py=Math.max(track.dotSize,pixelHeight-Math.round((val-track.minLogP)/yScale)),color&&igv.graphics.setProperties(ctx,{fillStyle:color,strokeStyle:"black"}),igv.graphics.fillCircle(ctx,px,py,track.dotSize),enablePopover&&track.po.push({x:px,y:py,feature:variant}))}}},igv.GWASTrack.prototype.paintAxis=function(ctx,pixelWidth,pixelHeight){var track=this,yScale=(track.maxLogP-track.minLogP)/pixelHeight,font={font:"normal 10px Arial",textAlign:"right",strokeStyle:"black"};igv.graphics.fillRect(ctx,0,0,pixelWidth,pixelHeight,{fillStyle:"rgb(255, 255, 255)"});for(var p=2;p<track.maxLogP;p+=2){var yp=pixelHeight-Math.round((p-track.minLogP)/yScale);igv.graphics.strokeLine(ctx,45,yp-2,50,yp-2,font),igv.graphics.fillText(ctx,p,44,yp+2,font)}font.textAlign="center",igv.graphics.fillText(ctx,"-log10(pvalue)",pixelWidth/2,pixelHeight/2,font,{rotate:{angle:-90}})},igv.GWASTrack.prototype.popupDataWithConfiguration=function(config){return this.popupData(config.genomicLocation,config.x,config.y,config.viewport.genomicState.referenceFrame)},igv.GWASTrack.prototype.popupData=function(genomicLocation,xOffset,yOffset,referenceFrame){var i,len,p,dbSnp,url,chr,pos,pvalue,data=[];if(this.po)for(i=0,len=this.po.length;i<len;i++)p=this.po[i],Math.abs(xOffset-p.x)<this.dotSize&&Math.abs(yOffset-p.y)<=this.dotSize&&(chr=p.feature.CHROM||p.feature.chr,pos=p.feature.POS||p.feature.start,pvalue=p.feature[this.pvalue]||p.feature.pvalue,dbSnp=p.feature.DBSNP_ID,dbSnp&&(url=this.variantURL.startsWith("http")?this.variantURL:this.portalURL+"/"+this.variantURL,data.push("<a target='_blank' href='"+url+(url.endsWith("/")?"":"/")+dbSnp+"' >"+dbSnp+"</a>")),data.push(chr+":"+pos.toString()),data.push({name:"p-value",value:pvalue}),p.feature.ZSCORE&&data.push({name:"z-score",value:p.feature.ZSCORE}),dbSnp&&(url=this.traitURL.startsWith("http")?this.traitURL:this.portalURL+"/"+this.traitURL,data.push("<a target='_blank' href='"+url+(url.endsWith("/")?"":"/")+dbSnp+"'>see all available statistics for this variant</a>")),i<len-1&&data.push("<p/>"));else data.push("Popover not available at this resolution.");return data},igv.GWASTrack.prototype.popupDataWithConfiguration=function(config){return this.popupData(config.genomicLocation,config.x,config.y,config.viewport.genomicState.referenceFrame)},igv}(igv||{}),igv=function(igv){function jsonToVariantsV2(json,config){var variants=[];return json.variants.forEach(function(record){var variant={};record.forEach(function(object){for(var property in object)object.hasOwnProperty(property)&&("POS"===property&&(variant.start=object[property]-1),variant[property]=object[property])}),variant.pvalue=variant[config.pvalue][config.dataset][config.trait],variant[config.pvalue]=void 0,variants.push(variant)}),variants}function queryJsonV2(queryChr,queryStart,queryEnd,config){var phenotype=config.trait,pvalue=config.pvalue,dataset=config.dataset,properties={cproperty:["VAR_ID","DBSNP_ID","CHROM","POS"],orderBy:["CHROM"],dproperty:{},pproperty:JSON.parse('{"'+pvalue+'": {"'+dataset+'": ["'+phenotype+'"]}}')},filters=[{dataset_id:"x",phenotype:"x",operand:"CHROM",operator:"EQ",value:queryChr,operand_type:"STRING"},{dataset_id:"x",phenotype:"x",operand:"POS",operator:"GTE",value:queryStart,operand_type:"INTEGER"},{dataset_id:"x",phenotype:"x",operand:"POS",operator:"LTE",value:queryEnd,operand_type:"INTEGER"},{dataset_id:dataset,phenotype:phenotype,operand:pvalue,operator:"LT",value:config.valueThreshold,operand_type:"FLOAT"}],data={passback:"x",entity:"variant",properties:properties,filters:filters};return JSON.stringify(data)}function queryJsonV1(queryChr,queryStart,queryEnd,config){var type=config.url.includes("variant")?VARIANT:TRAIT,pvalue=config.pvalue?config.pvalue:"PVALUE",filters=[{operand:"CHROM",operator:"EQ",value:queryChr,filter_type:"STRING"},{operand:"POS",operator:"GT",value:queryStart,filter_type:"FLOAT"},{operand:"POS",operator:"LT",value:queryEnd,filter_type:"FLOAT"},{operand:pvalue,operator:"LTE",value:config.valueThreshold,filter_type:"FLOAT"}],columns=type===TRAIT?["CHROM","POS","DBSNP_ID","PVALUE","ZSCORE"]:["CHROM","POS",pvalue,"DBSNP_ID"],data={user_group:"ui",filters:filters,columns:columns};return type===TRAIT&&(data.trait=config.trait),config.proxy?"url="+config.url+"&data="+JSON.stringify(data):JSON.stringify(data)}function jsonToVariantsV1(json,config){return json.variants.forEach(function(variant){variant.chr=variant.CHROM,variant.start=variant.POS-1}),json.variants}const VARIANT="VARIANT",TRAIT="TRAIT";igv.T2DVariantSource=function(config){this.config=config,this.url=config.url,this.trait=config.trait,this.dataset=config.dataset,this.pvalue=config.pvalue,void 0===config.valueThreshold&&(config.valueThreshold=.05),void 0===config.dataset?(this.queryJson=config.queryJson||queryJsonV1,this.jsonToVariants=config.jsonToVariants||jsonToVariantsV1):(this.queryJson=config.queryJson||queryJsonV2,this.jsonToVariants=config.jsonToVariants||jsonToVariantsV2)},igv.T2DVariantSource.prototype.getFeatures=function(chr,bpStart,bpEnd){var self=this;return new Promise(function(fulfill,reject){if(self.cache&&self.cache.chr===chr&&self.cache.end>bpEnd&&self.cache.start<bpStart)fulfill(self.cache.featuresBetween(bpStart,bpEnd));else{var window=Math.max(bpEnd-bpStart,1e7)/2,center=(bpEnd+bpStart)/2,queryChr=chr.startsWith("chr")?chr.substring(3):chr,queryStart=Math.max(0,center-window),queryEnd=center+window,queryURL=self.config.proxy?self.config.proxy:self.url,body=self.queryJson(queryChr,queryStart,queryEnd,self.config);igv.xhr.loadJson(queryURL,{sendData:body,withCredentials:self.config.withCredentials}).then(function(json){var variants;json?json.error_code?(igv.presentAlert("Error querying trait "+self.trait+"  (error_code="+json.error_code+")"),fulfill(null)):(variants=self.jsonToVariants(json,self.config),variants.sort(function(a,b){return a.POS-b.POS}),self.cache=new FeatureCache(chr,queryStart,queryEnd,variants),fulfill(variants)):fulfill(null)}).catch(reject)}})};var FeatureCache=function(chr,start,end,features){var i,bin,lastBin;for(this.chr=chr,this.start=start,this.end=end,this.binSize=(end-start)/100,this.binIndeces=[0],this.features=features,lastBin=0,i=0;i<features.length;i++)bin=Math.max(0,Math.floor((features[i].POS-this.start)/this.binSize)),bin>lastBin&&(this.binIndeces.push(i),lastBin=bin)};return FeatureCache.prototype.featuresBetween=function(start,end){var startBin=Math.max(0,Math.min(Math.floor((start-this.start)/this.binSize)-1,this.binIndeces.length-1)),endBin=Math.max(0,Math.min(Math.floor((end-this.start)/this.binSize),this.binIndeces.length-1));this.binIndeces[startBin],this.binIndeces[endBin];return this.features},igv}(igv||{}),igv=function(igv){function getSites(chrName){var self=this;return new Promise(function(fulfill,reject){var sites=self.fragmentSitesCache[chrName];if(sites)fulfill(sites);else if(self.fragmentSitesIndex){var entry=self.fragmentSitesIndex[chrName];void 0!==entry&&entry.nSites>0&&readSites(entry.position,entry.nSites).then(function(sites){self.fragmentSitesCache[chrName]=sites,fulfill(sites)}).catch(reject)}else fulfill(void 0)})}function parseMatixZoomData(chr1,chr2,chr1Sites,chr2Sites,dis){var unit=dis.getString();dis.getInt();for(var sumCounts=dis.getFloat(),binSize=(dis.getFloat(),dis.getFloat(),dis.getFloat(),dis.getInt()),zoom={unit:unit,binSize:binSize},blockBinCount=dis.getInt(),blockColumnCount=dis.getInt(),zd=new MatrixZoomData(chr1,chr2,zoom,blockBinCount,blockColumnCount,chr1Sites,chr2Sites),nBlocks=dis.getInt(),blockIndex={};nBlocks-- >0;){var blockNumber=dis.getInt(),filePosition=dis.getLong(),blockSizeInBytes=dis.getInt();blockIndex[blockNumber]={filePosition:filePosition,size:blockSizeInBytes}}zd.blockIndexMap=blockIndex;var nBins1=chr1.size/binSize,nBins2=chr2.size/binSize,avgCount=sumCounts/nBins1/nBins2;return zd.averageCount=avgCount,zd}function ExpectedValueFunction(normType,unit,binSize,values,normFactors){this.normType=normType,this.unit=unit,this.binSize=binSize,this.values=values,this.normFactors=normFactors}function NormalizationVector(type,chrIdx,unit,binSize,data){this.type=type,this.chrIdx=chrIdx,this.unit=unit,this.binSize=binSize,this.data=data}function MatrixZoomData(chr1,chr2,zoom,blockBinCount,blockColumnCount,chr1Sites,chr2Sites){this.chr1=chr1,this.chr2=chr2,this.zoom=zoom,this.blockBinCount=blockBinCount,this.blockColumnCount=blockColumnCount,this.chr1Sites=chr1Sites,this.chr2Sites=chr2Sites}function Matrix(chr1,chr2,zoomDataList){var self=this;this.chr1=chr1,this.chr2=chr2,this.bpZoomData=[],this.fragZoomData=[],_.each(zoomDataList,function(zd){"BP"===zd.zoom.unit?self.bpZoomData.push(zd):self.fragZoomData.push(zd)})}var Short_MIN_VALUE=-32768;return igv.HiCReader=function(config){this.path=config.url,this.headPath=config.headURL||this.path,this.config=config,this.fragmentSitesCache={}},igv.HiCReader.prototype.readHeader=function(){var self=this;return new Promise(function(fulfill,reject){igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:0,size:64e3}})).then(function(data){if(!data)return void fulfill(null);var binaryParser=new igv.BinaryParser(new DataView(data));self.magic=binaryParser.getString(),self.version=binaryParser.getInt(),self.masterIndexPos=binaryParser.getLong(),self.genomeId=binaryParser.getString(),self.attributes={};for(var nAttributes=binaryParser.getInt();nAttributes-- >0;)self.attributes[binaryParser.getString()]=binaryParser.getString();self.chromosomes=[];for(var nChrs=binaryParser.getInt();nChrs-- >0;)self.chromosomes.push({name:binaryParser.getString(),size:binaryParser.getInt()});self.bpResolutions=[];for(var nBpResolutions=binaryParser.getInt();nBpResolutions-- >0;)self.bpResolutions.push(binaryParser.getInt());self.fragResolutions=[];for(var nFragResolutions=binaryParser.getInt();nFragResolutions-- >0;)self.fragResolutions.push(binaryParser.getInt());if(nFragResolutions>0){self.sites=[];for(var nSites=binaryParser.getInt();nSites-- >0;)self.sites.push(binaryParser.getInt())}fulfill(self)}).catch(function(error){reject(error)})})},igv.HiCReader.prototype.readFooter=function(key){var self=this,range={start:this.masterIndexPos,size:1e8};return new Promise(function(fulfill,reject){igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:range})).then(function(data){var key,pos,size;if(!data)return void fulfill(null);var binaryParser=new igv.BinaryParser(new DataView(data));binaryParser.getInt();self.masterIndex={};for(var nEntries=binaryParser.getInt();nEntries-- >0;)key=binaryParser.getString(),pos=binaryParser.getLong(),size=binaryParser.getInt(),self.masterIndex[key]={start:pos,size:size};for(self.expectedValueVectors={},nEntries=binaryParser.getInt();nEntries-- >0;){for(var type="NONE",unit=binaryParser.getString(),binSize=binaryParser.getInt(),nValues=binaryParser.getInt(),values=[];nValues-- >0;)values.push(binaryParser.getDouble());for(var nChrScaleFactors=binaryParser.getInt(),normFactors={};nChrScaleFactors-- >0;)normFactors[binaryParser.getInt()]=binaryParser.getDouble();var key=unit+"_"+binSize+"_"+type;self.expectedValueVectors[key]=new ExpectedValueFunction(type,unit,binSize,values,normFactors)}if(self.version>=6){for(self.normalizedExpectedValueVectors={},nEntries=binaryParser.getInt();nEntries-- >0;){for(var type=binaryParser.getString(),unit=binaryParser.getString(),binSize=binaryParser.getInt(),nValues=binaryParser.getInt(),values=[];nValues-- >0;)values.push(binaryParser.getDouble());for(var nChrScaleFactors=binaryParser.getInt(),normFactors={};nChrScaleFactors-- >0;)normFactors[binaryParser.getInt()]=binaryParser.getDouble();var key=unit+"_"+binSize+"_"+type;self.normalizedExpectedValueVectors[key]=new ExpectedValueFunction(type,unit,binSize,values,normFactors)}for(self.normVectorIndex={},self.normalizationTypes=[],nEntries=binaryParser.getInt();nEntries-- >0;){type=binaryParser.getString();var chrIdx=binaryParser.getInt();unit=binaryParser.getString(),binSize=binaryParser.getInt();var filePosition=binaryParser.getLong(),sizeInBytes=binaryParser.getInt();key=NormalizationVector.getKey(type,chrIdx,unit.binSize),_.contains(self.normalizationTypes,type)===!1&&self.normalizationTypes.push(type),self.normVectorIndex[key]={filePosition:filePosition,sizeInByes:sizeInBytes}}}fulfill(self)}).catch(function(error){reject(error)})})},igv.HiCReader.prototype.readMatrix=function(key){var self=this,idx=self.masterIndex[key];return null==idx&&fulfill(void 0),new Promise(function(fulfill,reject){igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:idx.start,size:idx.size}})).then(function(data){if(!data)return void fulfill(null);var dis=new igv.BinaryParser(new DataView(data)),c1=dis.getInt(),c2=dis.getInt(),chr1=self.chromosomes[c1],chr2=self.chromosomes[c2],nResolutions=dis.getInt(),zdList=[],p1=getSites.call(self,chr1.name),p2=getSites.call(self,chr2.name);Promise.all([p1,p2]).then(function(results){for(var sites1=results[0],sites2=results[1];nResolutions-- >0;){var zd=parseMatixZoomData(chr1,chr2,sites1,sites2,dis);zdList.push(zd)}fulfill(new Matrix(c1,c2,zdList))}).catch(function(err){reject(err)})}).catch(reject)})},igv.HiCReader.prototype.readBlock=function(blockNumber,zd){var i,j,self=this,idx=null,blockIndex=zd.blockIndexMap;if(null!=blockIndex)var idx=blockIndex[blockNumber];return null==idx?Promise.resolve(new Block):new Promise(function(fulfill,reject){igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:idx.filePosition,size:idx.size}})).then(function(data){if(!data)return void fulfill(null);var inflate=new Zlib.Inflate(new Uint8Array(data)),plain=inflate.decompress();data=plain.buffer;var parser=new igv.BinaryParser(new DataView(data)),nRecords=parser.getInt(),records=[];if(self.version<7)for(i=0;i<nRecords;i++){var binX=parser.getInt(),binY=parser.getInt(),counts=parser.getFloat();records.add(new ContactRecord(binX,binY,counts))}else{var binXOffset=parser.getInt(),binYOffset=parser.getInt(),useShort=0==parser.getByte(),type=parser.getByte();if(1===type){var rowCount=parser.getShort();for(i=0;i<rowCount;i++){binY=binYOffset+parser.getShort();var colCount=parser.getShort();for(j=0;j<colCount;j++)binX=binXOffset+parser.getShort(),counts=useShort?parser.getShort():parser.getFloat(),records.push(new ContactRecord(binX,binY,counts))}}else if(2==type){var nPts=parser.getInt(),w=parser.getShort();for(i=0;i<nPts;i++){var row=i/w,col=i-row*w,bin1=binXOffset+col,bin2=binYOffset+row;useShort?(counts=parser.getShort(),counts!=Short_MIN_VALUE&&records.push(new ContactRecord(bin1,bin2,counts))):(counts=parser.getFloat(),isNaN(counts)||records.push(new ContactRecord(bin1,bin2,counts)))}}else reject("Unknown block type: "+type)}fulfill(new Block(blockNumber,records))}).catch(reject)})},NormalizationVector.getKey=function(type,chrIdx,unit,binSize){return type+"_"+chrIdx+"_"+unit+"_"+binSize},MatrixZoomData.prototype.getKey=function(){return this.chr1.name+"_"+this.chr2.name+"_"+this.zoom.unit+"_"+this.zoom.binSize},Matrix.prototype.getZoomData=function(zoom){var i,zdArray="BP"===zoom.unit?this.bpZoomData:this.fragZoomData;for(i=0;i<zdArray.length;i++){var zd=zdArray[i];if(zoom.binSize===zd.zoom.binSize)return zd}},ContactRecord=function(bin1,bin2,counts){this.bin1=bin1,this.bin2=bin2,this.counts=counts},Block=function(blockNumber,records){this.blockNumber=blockNumber,this.records=records},igv}(igv||{}),igv=function(igv){return igv.IdeoPanel=function($content_header){$content_header.append($('<div class="igv-ideogram-left-shim"></div>')),this.buildPanels($content_header)},igv.IdeoPanel.setWidth=function($ideogram,width){var percentage;$ideogram.width(width),percentage=$ideogram.width()/$ideogram.outerWidth(),$ideogram.width(Math.floor(percentage*width))},igv.IdeoPanel.prototype.buildPanels=function($content_header){this.panels=_.map(igv.browser.genomicStateList,function(genomicState){function addBorders($ideogram,locusIndex,lociCount){1!==lociCount&&locusIndex!==lociCount-1&&$ideogram.addClass("igv-ideogram-content-div-border-right")}var viewportContainerWidth=igv.browser.viewportContainerWidth(),panel={};return panel.genomicState=genomicState,panel.$ideogram=$('<div class="igv-ideogram-content-div"></div>'),addBorders(panel.$ideogram,genomicState.locusIndex,genomicState.locusCount),igv.IdeoPanel.setWidth(panel.$ideogram,viewportContainerWidth/genomicState.locusCount),$content_header.append(panel.$ideogram),panel.$canvas=$("<canvas>"),panel.$ideogram.append(panel.$canvas),panel.$canvas.attr("width",panel.$ideogram.width()),panel.$canvas.attr("height",panel.$ideogram.height()),panel.ctx=panel.$canvas.get(0).getContext("2d"),panel.ideograms={},panel.$ideogram.on("click",function(e){igv.IdeoPanel.clickHandler(panel,e)}),panel})},igv.IdeoPanel.$empty=function($content_header){var $a=$content_header.find(".igv-ideogram-content-div");$a.remove()},igv.IdeoPanel.prototype.panelWithLocusIndex=function(locusIndex){var panels=_.filter(this.panels,function(panel){return locusIndex===panel.genomicState.locusIndex});return _.first(panels)},igv.IdeoPanel.prototype.resize=function(){var viewportContainerWidth=igv.browser.syntheticViewportContainerWidth();_.each(this.panels,function(panel,index){var genomicState=igv.browser.genomicStateList[index];panel.$ideogram.width(Math.floor(viewportContainerWidth/genomicState.locusCount)),panel.$canvas.attr("width",panel.$ideogram.width()),panel.ideograms={}}),this.repaint()},igv.IdeoPanel.prototype.repaint=function(){_.each(this.panels,function(panel){igv.IdeoPanel.repaintPanel(panel)})},igv.IdeoPanel.repaintPanel=function(panel){function drawIdeogram(bufferCtx,ideogramWidth,ideogramHeight){var shim=1,ideogramTop=0;if(igv.browser.genome){var cytobands=igv.browser.genome.getCytobands(referenceFrame.chrName);if(cytobands){var center=ideogramTop+ideogramHeight/2,xC=[],yC=[],len=cytobands.length;if(0==len)return;for(var chrLength=cytobands[len-1].end,scale=ideogramWidth/chrLength,lastPX=-1,i=0;i<cytobands.length;i++){var cytoband=cytobands[i],start=scale*cytoband.start,end=scale*cytoband.end;end>lastPX&&("c"==cytoband.type?("p"==cytoband.name.charAt(0)?(xC[0]=start,yC[0]=ideogramHeight+ideogramTop,xC[1]=start,yC[1]=ideogramTop,xC[2]=end,yC[2]=center):(xC[0]=end,yC[0]=ideogramHeight+ideogramTop,xC[1]=end,yC[1]=ideogramTop,xC[2]=start,yC[2]=center),bufferCtx.fillStyle="rgb(150, 0, 0)",bufferCtx.strokeStyle="rgb(150, 0, 0)",bufferCtx.polygon(xC,yC,1,0)):(bufferCtx.fillStyle=getCytobandColor(stainColors,cytoband),bufferCtx.fillRect(start,shim+ideogramTop,end-start,ideogramHeight-2*shim)))}}bufferCtx.strokeStyle="black",bufferCtx.roundRect(shim,shim+ideogramTop,ideogramWidth-2*shim,ideogramHeight-2*shim,(ideogramHeight-2*shim)/2,0,1),lastPX=end}}function getCytobandColor(colors,data){if("c"==data.type)return"rgb(150, 10, 10)";var stain=data.stain,shade=230;"p"==data.type&&(shade=Math.floor(230-stain/100*230));var c=colors[shade];return null==c&&(c="rgb("+shade+","+shade+","+shade+")",colors[shade]=c),c}try{var y,image,chromosome,widthPercentage,xPercentage,canvasWidth,canvasHeight,width,widthBP,x,xBP,referenceFrame,stainColors,xx,yy,ww,hh;if(referenceFrame=panel.genomicState.referenceFrame,!(igv.browser.genome&&referenceFrame&&igv.browser.genome.getChromosome(referenceFrame.chrName)))return;if(stainColors=[],canvasWidth=panel.$canvas.width(),canvasHeight=panel.$canvas.height(),panel.ctx.clearRect(0,0,canvasWidth,canvasHeight),"all"===referenceFrame.chrName.toLowerCase())return;image=panel.ideograms[referenceFrame.chrName],void 0===image&&(image=document.createElement("canvas"),image.width=canvasWidth,image.height=canvasHeight,drawIdeogram(image.getContext("2d"),image.width,image.height),panel.ideograms[referenceFrame.chrName]=image),y=0,panel.ctx.drawImage(image,0,0),chromosome=igv.browser.genome.getChromosome(referenceFrame.chrName),widthBP=Math.round(referenceFrame.bpPerPixel*panel.$ideogram.width()),xBP=referenceFrame.start,widthBP<chromosome.bpLength&&(widthPercentage=widthBP/chromosome.bpLength,xPercentage=xBP/chromosome.bpLength,x=Math.floor(xPercentage*panel.$canvas.width()),width=Math.floor(widthPercentage*panel.$canvas.width()),x=Math.max(0,x),x=Math.min(canvasWidth-width,x),panel.ctx.save(),panel.ctx.strokeStyle="red",panel.ctx.lineWidth=width<2?1:2,xx=x+panel.ctx.lineWidth/2,ww=width<2?1:width-panel.ctx.lineWidth,yy=y+panel.ctx.lineWidth/2,hh=image.height-panel.ctx.lineWidth,panel.ctx.strokeRect(xx,yy,ww,hh),panel.ctx.restore())}catch(e){console.log("Error painting ideogram: "+e.message)}},igv.IdeoPanel.clickHandler=function(panel,e){var xy,xPercentage,chr,locusLength,chrCoveragePercentage,ss,ee,genomicState=panel.genomicState,referenceFrame=genomicState.referenceFrame;xy=igv.translateMouseCoordinates(e,panel.$ideogram.get(0)),xPercentage=xy.x/panel.$ideogram.width(),locusLength=referenceFrame.bpPerPixel*panel.$ideogram.width(),chr=igv.browser.genome.getChromosome(referenceFrame.chrName),chrCoveragePercentage=locusLength/chr.bpLength,xPercentage-chrCoveragePercentage/2<0&&(xPercentage=chrCoveragePercentage/2),xPercentage+chrCoveragePercentage/2>1&&(xPercentage=1-chrCoveragePercentage/2),ss=Math.round((xPercentage-chrCoveragePercentage/2)*chr.bpLength),ee=Math.round((xPercentage+chrCoveragePercentage/2)*chr.bpLength),referenceFrame.start=Math.round((xPercentage-chrCoveragePercentage/2)*chr.bpLength),referenceFrame.bpPerPixel=(ee-ss)/panel.$ideogram.width(),igv.browser.updateLocusSearchWithGenomicState(genomicState),igv.browser.repaintWithLocusIndex(panel.genomicState.locusIndex)},igv}(igv||{}),igv=function(igv){function doPath(ctx,x,y){var i,len=x.length;for(i=0;i<len;i++)x[i]=Math.round(x[i]),y[i]=Math.round(y[i]);for(ctx.beginPath(),ctx.moveTo(x[0],y[0]),i=1;i<len;i++)ctx.lineTo(x[i],y[i]);ctx.closePath()}var debug=!1,log=function(msg){if(debug){var d=new Date,time=d.getHours()+":"+d.getMinutes()+":"+d.getSeconds();"undefined"!=typeof copy&&copy(msg),"undefined"!=typeof console&&console.log("igv-canvas: "+time+" "+msg)}};return igv.graphics={setProperties:function(ctx,properties){for(var key in properties)if(properties.hasOwnProperty(key)){var value=properties[key];ctx[key]=value}},strokeLine:function(ctx,x1,y1,x2,y2,properties){x1=Math.floor(x1)+.5,y1=Math.floor(y1)+.5,x2=Math.floor(x2)+.5,y2=Math.floor(y2)+.5,log("stroke line, prop: "+properties),ctx.save(),properties&&igv.graphics.setProperties(ctx,properties),ctx.beginPath(),ctx.moveTo(x1,y1),ctx.lineTo(x2,y2),ctx.stroke(),ctx.restore()},fillRect:function(ctx,x,y,w,h,properties){x=Math.round(x),y=Math.round(y),properties&&(ctx.save(),igv.graphics.setProperties(ctx,properties)),ctx.fillRect(x,y,w,h),properties&&ctx.restore()},fillPolygon:function(ctx,x,y,properties){ctx.save(),properties&&igv.graphics.setProperties(ctx,properties),doPath(ctx,x,y),ctx.fill(),ctx.restore()},strokePolygon:function(ctx,x,y,properties){ctx.save(),properties&&igv.graphics.setProperties(ctx,properties),doPath(ctx,x,y),ctx.stroke(),ctx.restore()},fillText:function(ctx,text,x,y,properties,transforms){if(properties&&(ctx.save(),igv.graphics.setProperties(ctx,properties)),ctx.save(),ctx.translate(x,y),transforms)for(var transform in transforms){var value=transforms[transform];"translate"==transform&&ctx.translate(value.x,value.y),"rotate"==transform&&ctx.rotate(value.angle*Math.PI/180)}ctx.fillText(text,0,0),ctx.restore(),properties&&ctx.restore()},strokeText:function(ctx,text,x,y,properties,transforms){if(ctx.save(),properties&&igv.graphics.setProperties(ctx,properties),ctx.translate(x,y),transforms)for(var transform in transforms){var value=transforms[transform];"translate"==transform&&ctx.translate(value.x,value.y),"rotate"==transform&&ctx.rotate(value.angle*Math.PI/180)}ctx.strokeText(text,0,0),ctx.restore()},strokeCircle:function(ctx,x,y,radius){ctx.beginPath(),ctx.arc(x,y,radius,0,2*Math.PI),ctx.stroke()},fillCircle:function(ctx,x,y,radius){ctx.beginPath(),ctx.arc(x,y,radius,0,2*Math.PI),ctx.fill()},drawArrowhead:function(ctx,x,y,size,lineWidth){ctx.save(),size||(size=5),lineWidth&&(ctx.lineWidth=lineWidth),ctx.beginPath(),ctx.moveTo(x,y-size/2),ctx.lineTo(x,y+size/2),ctx.lineTo(x+size,y),ctx.lineTo(x,y-size/2),ctx.closePath(),ctx.fill(),ctx.restore()},dashedLine:function(ctx,x1,y1,x2,y2,dashLen,properties){ctx.save(),x1=Math.round(x1),y1=Math.round(y1),x2=Math.round(x2),y2=Math.round(y2),dashLen=Math.round(dashLen),log("dashedLine"),properties&&igv.graphics.setProperties(ctx,properties),void 0==dashLen&&(dashLen=2),ctx.moveTo(x1,y1);for(var dX=x2-x1,dY=y2-y1,dashes=Math.floor(Math.sqrt(dX*dX+dY*dY)/dashLen),dashX=dX/dashes,dashY=dY/dashes,q=0;q++<dashes;)x1+=dashX,y1+=dashY,ctx[q%2==0?"moveTo":"lineTo"](x1,y1);ctx[q%2==0?"moveTo":"lineTo"](x2,y2),ctx.restore()}},igv}(igv||{}),igv=function(igv){igv.createColorSwatchSelector=function($genericContainer,colorHandler){var rgbs,s;s=1,rgbs=[];for(var v=1;v>=.5;v-=.1)for(var r,h=0;h<1;h+=1/28)r="rgb("+igv.Color.hsvToRgb(h,s,v).join(",")+")",rgbs.push(r);rgbs.forEach(function(rgb){var $swatch;$swatch=igv.colorSwatch(rgb),$genericContainer.append($swatch),$swatch.click(function(){colorHandler(rgb)})})},igv.colorSwatch=function(rgbString){var $swatch,$fa;return $swatch=$("<div>",{class:"igv-color-swatch"}),$fa=$("<i>",{class:"fa fa-square fa-lg","aria-hidden":"true"}),$swatch.append($fa),$fa.css({color:rgbString}),$swatch},igv.Color={rgbToHex:function(rgb){return rgb=rgb.match(/^rgba?[\s+]?\([\s+]?(\d+)[\s+]?,[\s+]?(\d+)[\s+]?,[\s+]?(\d+)[\s+]?/i),rgb&&4===rgb.length?"#"+("0"+parseInt(rgb[1],10).toString(16)).slice(-2)+("0"+parseInt(rgb[2],10).toString(16)).slice(-2)+("0"+parseInt(rgb[3],10).toString(16)).slice(-2):"";
+},hexToRgb:function(hex){var cooked=/^#?([a-f\d]{2})([a-f\d]{2})([a-f\d]{2})$/i.exec(hex);if(null!==cooked)return"rgb("+parseInt(cooked[1],16)+","+parseInt(cooked[2],16)+","+parseInt(cooked[3],16)+")"},hsvToRgb:function(h,s,v){var r,g,b,i=Math.floor(6*h),f=6*h-i,p=v*(1-s),q=v*(1-f*s),t=v*(1-(1-f)*s);switch(i%6){case 0:r=v,g=t,b=p;break;case 1:r=q,g=v,b=p;break;case 2:r=p,g=v,b=t;break;case 3:r=p,g=q,b=v;break;case 4:r=t,g=p,b=v;break;case 5:r=v,g=p,b=q}return[Math.floor(255*r),Math.floor(255*g),Math.floor(255*b)]},hslToRgb:function(h,s,l){function hue2rgb(p,q,t){return t<0&&(t+=1),t>1&&(t-=1),t<1/6?p+6*(q-p)*t:t<.5?q:t<2/3?p+(q-p)*(2/3-t)*6:p}var r,g,b;if(0===s)r=g=b=l;else{var q=l<.5?l*(1+s):l+s-l*s,p=2*l-q;r=hue2rgb(p,q,h+1/3),g=hue2rgb(p,q,h),b=hue2rgb(p,q,h-1/3)}return[255*r,255*g,255*b]},rgbaColor:function(r,g,b,a){return r=igv.Math.clamp(r,0,255),g=igv.Math.clamp(g,0,255),b=igv.Math.clamp(b,0,255),a=igv.Math.clamp(a,0,1),"rgba("+r+","+g+","+b+","+a+")"},rgbColor:function(r,g,b){return r=igv.Math.clamp(r,0,255),g=igv.Math.clamp(g,0,255),b=igv.Math.clamp(b,0,255),"rgb("+r+","+g+","+b+")"},greyScale:function(value){var grey=igv.Math.clamp(value,0,255);return"rgb("+grey+","+grey+","+grey+")"},randomGrey:function(min,max){min=igv.Math.clamp(min,0,255),max=igv.Math.clamp(max,0,255);var g=Math.round(igv.random(min,max)).toString(10);return"rgb("+g+","+g+","+g+")"},randomRGB:function(min,max){min=igv.Math.clamp(min,0,255),max=igv.Math.clamp(max,0,255);var r=Math.round(igv.random(min,max)).toString(10),g=Math.round(igv.random(min,max)).toString(10),b=Math.round(igv.random(min,max)).toString(10);return"rgb("+r+","+g+","+b+")"},randomRGBConstantAlpha:function(min,max,alpha){min=igv.Math.clamp(min,0,255),max=igv.Math.clamp(max,0,255);var r=Math.round(igv.random(min,max)).toString(10),g=Math.round(igv.random(min,max)).toString(10),b=Math.round(igv.random(min,max)).toString(10);return"rgba("+r+","+g+","+b+","+alpha+")"},addAlpha:function(color,alpha){var isHex=/(^#[0-9A-F]{6}$)|(^#[0-9A-F]{3}$)/i.test(color);return color.startsWith("rgba")?color:(isHex&&(color=igv.Color.hexToRgb(color)),color.startsWith("rgb")?color.replace("rgb","rgba").replace(")",", "+alpha+")"):(console.log(color+" is not an rgb style string"),color))},getCompositeColor:function(dest,src,alpha){var r=Math.floor(alpha*src[0]+(1-alpha)*dest[0]),g=Math.floor(alpha*src[1]+(1-alpha)*dest[1]),b=Math.floor(alpha*src[2]+(1-alpha)*dest[2]);return"rgb("+r+","+g+","+b+")"},createColorString:function(token){return token.includes(",")?token.startsWith("rgb")?token:"rgb("+token+")":void 0}},igv.nucleotideColorComponents={A:[0,200,0],C:[0,0,200],T:[255,0,0],G:[209,113,5],a:[0,200,0],c:[0,0,200],t:[255,0,0],g:[209,113,5]},igv.nucleotideColors={A:"rgb(  0, 200,   0)",C:"rgb(  0,   0, 200)",T:"rgb(255,   0,   0)",G:"rgb(209, 113,   5)",a:"rgb(  0, 200,   0)",c:"rgb(  0,   0, 200)",t:"rgb(255,   0,   0)",g:"rgb(209, 113,   5)"},igv.BinnedColorScale=function(cs){this.thresholds=cs.thresholds,this.colors=cs.colors},igv.BinnedColorScale.prototype.getColor=function(value){var i,len=this.thresholds.length;for(i=0;i<len;i++)if(value<this.thresholds[i])return this.colors[i];return this.colors[this.colors.length-1]},igv.GradientColorScale=function(scale){this.scale=scale,this.lowColor="rgb("+scale.lowR+","+scale.lowG+","+scale.lowB+")",this.highColor="rgb("+scale.highR+","+scale.highG+","+scale.highB+")",this.diff=scale.high-scale.low},igv.GradientColorScale.prototype.getColor=function(value){var r,g,b,frac,scale=this.scale;return value<=scale.low?this.lowColor:value>=scale.high?this.highColor:(frac=(value-scale.low)/this.diff,r=Math.floor(scale.lowR+frac*(scale.highR-scale.lowR)),g=Math.floor(scale.lowG+frac*(scale.highG-scale.lowG)),b=Math.floor(scale.lowB+frac*(scale.highB-scale.lowB)),"rgb("+r+","+g+","+b+")")};var colorPalettes={Set1:["rgb(228,26,28)","rgb(55,126,184)","rgb(77,175,74)","rgb(166,86,40)","rgb(152,78,163)","rgb(255,127,0)","rgb(247,129,191)","rgb(153,153,153)","rgb(255,255,51)"],Dark2:["rgb(27,158,119)","rgb(217,95,2)","rgb(117,112,179)","rgb(231,41,138)","rgb(102,166,30)","rgb(230,171,2)","rgb(166,118,29)","rgb(102,102,102)"],Set2:["rgb(102, 194,165)","rgb(252,141,98)","rgb(141,160,203)","rgb(231,138,195)","rgb(166,216,84)","rgb(255,217,47)","rgb(229,196,148)","rgb(179,179,179)"],Set3:["rgb(141,211,199)","rgb(255,255,179)","rgb(190,186,218)","rgb(251,128,114)","rgb(128,177,211)","rgb(253,180,98)","rgb(179,222,105)","rgb(252,205,229)","rgb(217,217,217)","rgb(188,128,189)","rgb(204,235,197)","rgb(255,237,111)"],Pastel1:["rgb(251,180,174)","rgb(179,205,227)","rgb(204,235,197)","rgb(222,203,228)","rgb(254,217,166)","rgb(255,255,204)","rgb(229,216,189)","rgb(253,218,236)"],Pastel2:["rgb(173,226,207)","rgb(253,205,172)","rgb(203,213,232)","rgb(244,202,228)","rgb(230,245,201)","rgb(255,242,174)","rgb(243,225,206)"],Accent:["rgb(127,201,127)","rgb(190,174,212)","rgb(253,192,134)","rgb(255,255,153)","rgb(56,108,176)","rgb(240,2,127)","rgb(191,91,23)"]};return igv.PaletteColorTable=function(palette){this.colors=colorPalettes[palette],Array.isArray(this.colors)||(this.colors=[]),this.colorTable={},this.nextIdx=0,this.colorGenerator=new RColor},igv.PaletteColorTable.prototype.getColor=function(key){return this.colorTable.hasOwnProperty(key)||(this.nextIdx<this.colors.length?this.colorTable[key]=this.colors[this.nextIdx]:this.colorTable[key]=this.colorGenerator.get(),this.nextIdx++),this.colorTable[key]},RColor=function(){this.hue=Math.random(),this.goldenRatio=.618033988749895,this.hexwidth=2},RColor.prototype.hsvToRgb=function(h,s,v){var h_i=Math.floor(6*h),f=6*h-h_i,p=v*(1-s),q=v*(1-f*s),t=v*(1-(1-f)*s),r=255,g=255,b=255;switch(h_i){case 0:r=v,g=t,b=p;break;case 1:r=q,g=v,b=p;break;case 2:r=p,g=v,b=t;break;case 3:r=p,g=q,b=v;break;case 4:r=t,g=p,b=v;break;case 5:r=v,g=p,b=q}return[Math.floor(256*r),Math.floor(256*g),Math.floor(256*b)]},RColor.prototype.padHex=function(str){return str.length>this.hexwidth?str:new Array(this.hexwidth-str.length+1).join("0")+str},RColor.prototype.get=function(saturation,value){this.hue+=this.goldenRatio,this.hue%=1,"number"!=typeof saturation&&(saturation=.5),"number"!=typeof value&&(value=.95);var rgb=this.hsvToRgb(this.hue,saturation,value);return"#"+this.padHex(rgb[0].toString(16))+this.padHex(rgb[1].toString(16))+this.padHex(rgb[2].toString(16))},igv}(igv||{}),igv=function(igv){function setTrackOrder(conf){var trackOrder=1;conf.tracks&&conf.tracks.forEach(function(track){void 0===track.order&&(track.order=trackOrder++)})}function setReferenceConfiguration(conf){function expandGenome(genomeId){var reference=igv.Genome.KnownGenomes[genomeId];return reference||igv.presentAlert("Uknown genome id: "+genomeId),reference}if(conf.genome?conf.reference=expandGenome(conf.genome):conf.fastaURL?conf.reference={fastaURL:conf.fastaURL,cytobandURL:conf.cytobandURL}:conf.reference&&void 0!==conf.reference.id&&void 0===conf.reference.fastaURL&&(conf.reference=expandGenome(conf.reference.id)),!conf.reference||!conf.reference.fastaURL)throw igv.presentAlert("Fatal error:  reference must be defined"),new Error("Fatal error:  reference must be defined")}function setControls(browser,conf){var controlDiv;conf.showCommandBar!==!1&&conf.showControls!==!1&&(controlDiv=conf.createControls?conf.createControls(browser,conf):createStandardControls(browser,conf),browser.$root.append($(controlDiv)))}function createStandardControls(browser,config){var $igvLogo,$controls,$karyo,$navigation,$searchContainer,$faSearch;return $controls=$('<div id="igvControlDiv">'),config.showNavigation&&($navigation=$('<div class="igv-navbar">'),$controls.append($navigation),$igvLogo=$('<div class="igv-logo">'),$navigation.append($igvLogo),$navigation.append(browser.trackFileLoad.$presentationButton),!0===config.showLoadFileWidget?browser.trackFileLoad.$presentationButton.show():browser.trackFileLoad.$presentationButton.hide(),browser.chromosomeSelectWidget=new igv.ChromosomeSelectWidget(browser,$navigation),!0===config.showChromosomeWidget?browser.chromosomeSelectWidget.$container.show():browser.chromosomeSelectWidget.$container.hide(),$searchContainer=$('<div class="igv-search-container">'),$navigation.append($searchContainer),browser.$searchInput=$('<input type="text" placeholder="Locus Search">'),$searchContainer.append(browser.$searchInput),browser.$searchInput.change(function(e){browser.parseSearchInput($(this).val())}),$faSearch=$('<i class="fa fa-search">'),$searchContainer.append($faSearch),$faSearch.click(function(){browser.parseSearchInput(browser.$searchInput.val())}),browser.$searchResults=$('<div class="igv-search-results">'),$searchContainer.append(browser.$searchResults.get(0)),browser.$searchResultsTable=$("<table>"),browser.$searchResults.append(browser.$searchResultsTable.get(0)),browser.$searchResults.hide(),browser.windowSizePanel=new igv.WindowSizePanel($navigation),zoomWidget(browser,$navigation),browser.$cursorTrackingGuide=$('<div class="igv-cursor-tracking-guide">'),$(browser.trackContainerDiv).append(browser.$cursorTrackingGuide),!0===config.showCursorTrackingGuide?browser.$cursorTrackingGuide.show():browser.$cursorTrackingGuide.hide(),browser.$cursorTrackingGuideToggle=igv.makeToggleButton("cursor guide","cursor guide","showCursorTrackingGuide",function(){return browser.$cursorTrackingGuide},void 0),$navigation.append(browser.$cursorTrackingGuideToggle),browser.centerGuide=new igv.CenterGuide($(browser.trackContainerDiv),config),$navigation.append(browser.centerGuide.$centerGuideToggle),browser.$trackLabelToggle=igv.makeToggleButton("track labels","track labels","trackLabelsVisible",function(){return $(browser.trackContainerDiv).find(".igv-track-label")},void 0),$navigation.append(browser.$trackLabelToggle)),$karyo=$("#igvKaryoDiv"),void 0===$karyo.get(0)&&($karyo=$('<div id="igvKaryoDiv" class="igv-karyo-div">'),$controls.append($karyo)),browser.karyoPanel=new igv.KaryoPanel($karyo,config),$navigation.append(browser.karyoPanel.$karyoPanelToggle),!1===config.showKaryo&&(browser.karyoPanel.$karyoPanelToggle.hide(),$karyo.hide()),$controls.get(0)}function zoomWidget(browser,$parent){var $fa;browser.$zoomContainer=$('<div class="igv-zoom-widget">'),$parent.append(browser.$zoomContainer),$fa=$('<i class="fa fa-minus-circle">'),browser.$zoomContainer.append($fa),$fa.on("click",function(){browser.zoomOut()}),$fa=$('<i class="fa fa-plus-circle">'),browser.$zoomContainer.append($fa),$fa.on("click",function(){browser.zoomIn()})}function setDefaults(config){void 0===config.encodeEnabled&&(config.encodeEnabled=!1),void 0===config.showLoadFileWidget&&(config.showLoadFileWidget=!1),void 0===config.minimumBases&&(config.minimumBases=40),void 0===config.showIdeogram&&(config.showIdeogram=!0),void 0===config.showCursorTrackingGuide&&(config.showCursorTrackingGuide=!1),void 0===config.showCenterGuide&&(config.showCenterGuide=!1),void 0===config.showKaryo&&(config.showKaryo=!1),void 0===config.trackLabelsVisible&&(config.trackLabelsVisible=!0),void 0===config.showControls&&(config.showControls=!0),void 0===config.showNavigation&&(config.showNavigation=!0),void 0===config.showRuler&&(config.showRuler=!0),void 0===config.showSequence&&(config.showSequence=!0),void 0===config.flanking&&(config.flanking=1e3),void 0===config.pairsSupported&&(config.pairsSupported=!0),void 0===config.type&&(config.type="IGV"),config.tracks||(config.tracks=[]),config.showSequence&&config.tracks.push({type:"sequence",order:-Number.MAX_VALUE})}function getInitialLocus(config){var loci=[];return config.locus?Array.isArray(config.locus)?loci=config.locus:loci.push(config.locus):igv.browser.genome.hasOwnProperty("all")?loci.push("all"):loci.push(igv.browser.genome.chromosomeNames[0]),loci}function extractQuery(uri){var i1,i2,i,j,s,query,tokens;if(query={},i1=uri.indexOf("?"),i2=uri.lastIndexOf("#"),i1>=0)for(i2<0&&(i2=uri.length),i=i1+1;i<i2;)j=uri.indexOf("&",i),j<0&&(j=i2),s=uri.substring(i,j),tokens=s.split("=",2),2===tokens.length&&(query[tokens[0]]=tokens[1]),i=j+1;return query}function loadSessionFile(){var query=extractQuery(window.location.href);if(query.hasOwnProperty("igvSessionXML")){var igvSession=decodeURIComponent(query.igvSessionXML);return igv.xhr.loadString(igvSession).then(function(string){return new igv.XMLSession(string)})}return Promise.resolve(void 0)}function extractLocus(){var query=extractQuery(window.location.href),loc=query.locus;return loc?decodeURIComponent(loc):void 0}var igvjs_version="beta";return igv.version=igvjs_version,igv.createBrowser=function(parentDiv,config){var $content,$header,browser;igv.browser&&igv.removeBrowser(),void 0===config&&(config={}),setDefaults(config),setTrackOrder(config),browser=new igv.Browser(config,$('<div class="igv-track-container-div">')[0]),$(parentDiv).append(browser.$root),browser.trackFileLoad=new igv.TrackFileLoad,browser.$root.append(browser.trackFileLoad.$container),browser.trackFileLoad.$container.hide(),setControls(browser,config),$content=$('<div class="igv-content-div">'),browser.$root.append($content),$header=$('<div id="igv-content-header">'),$content.append($header),$content.append(browser.trackContainerDiv),browser.userFeedback=new igv.UserFeedback($content),browser.userFeedback.hide(),igv.popover=new igv.Popover($content),igv.alert=new igv.AlertDialog(browser.$root,"igv-alert"),igv.alert.hide(),igv.dialog=new igv.Dialog(browser.$root,igv.Dialog.dialogConstructor),igv.dialog.hide(),igv.dataRangeDialog=new igv.DataRangeDialog(browser.$root),igv.dataRangeDialog.hide(),config.showNavigation||$header.append($('<div class="igv-logo-nonav">')),config.apiKey&&igv.setApiKey(config.apiKey),config.oauthToken&&igv.setOauthToken(config.oauthToken);var width;return loadSessionFile().then(function(session){session&&(config=Object.assign(config,session)),setReferenceConfiguration(config);var initialLocus=extractLocus();return initialLocus&&(config.locus=initialLocus),config}).then(function(config){return igv.loadGenome(config.reference)}).then(function(genome){return igv.browser.genome=genome,igv.browser.genome.id=config.reference.id,!0===config.encodeEnabled&&igv.browser.encodeTable.loadData(),igv.browser.chromosomeSelectWidget.update(igv.browser.genome),width=igv.browser.viewportContainerWidth(),igv.browser.getGenomicStateList(getInitialLocus(config),width)}).then(function(genomicStateList){var errorString;genomicStateList.length>0?(igv.browser.genomicStateList=genomicStateList.map(function(genomicState,index){return genomicState.locusIndex=index,genomicState.locusCount=genomicStateList.length,genomicState.referenceFrame=new igv.ReferenceFrame(genomicState.chromosome.name,genomicState.start,(genomicState.end-genomicState.start)/(width/genomicState.locusCount)),genomicState.initialReferenceFrame=new igv.ReferenceFrame(genomicState.chromosome.name,genomicState.start,(genomicState.end-genomicState.start)/(width/genomicState.locusCount)),genomicState}),igv.browser.updateLocusSearchWithGenomicState(_.first(igv.browser.genomicStateList)),igv.browser.zoomWidgetLayout(),igv.browser.toggleCenterGuide(igv.browser.genomicStateList),igv.browser.karyoPanel&&igv.browser.karyoPanel.resize(),!0===config.showIdeogram&&(igv.browser.ideoPanel=new igv.IdeoPanel($header),igv.browser.ideoPanel.repaint()),config.showRuler&&(igv.browser.rulerTrack=new igv.RulerTrack,igv.browser.addTrack(igv.browser.rulerTrack)),config.roi&&(igv.browser.roi=[],config.roi.forEach(function(r){igv.browser.roi.push(new igv.ROI(r))})),config.tracks&&igv.browser.loadTracksWithConfigList(config.tracks),igv.browser.windowSizePanel.updateWithGenomicState(_.first(igv.browser.genomicStateList))):(errorString="Unrecognized locus "+config.locus,igv.presentAlert(errorString))}).catch(function(error){igv.presentAlert(error),console.log(error)}),browser},igv.setApiKey=function(key){oauth.google.apiKey=key},igv.setOauthToken=function(token){oauth.google.access_token=token},igv.removeBrowser=function(){igv.browser.$root.remove(),$(".igv-grid-container-dialog").remove()},igv}(igv||{});CanvasRenderingContext2D.prototype.strokeLine=function(x1,y1,x2,y2,lineWidth){this.save(),this.beginPath(),lineWidth&&(this.lineWidth=lineWidth),this.moveTo(x1,y1),this.lineTo(x2,y2),this.stroke(),this.restore()},CanvasRenderingContext2D.prototype.drawArrowhead=function(x,y,size,lineWidth){this.save(),size||(size=5),lineWidth&&(this.lineWidth=lineWidth),this.beginPath(),this.moveTo(x,y-size/2),this.lineTo(x,y+size/2),this.lineTo(x+size,y),this.lineTo(x,y-size/2),this.closePath(),this.fill(),this.restore()},CanvasRenderingContext2D.prototype.roundRect=function(x,y,width,height,radius,fill,stroke){this.save(),"undefined"==typeof stroke&&(stroke=!0),"undefined"==typeof radius&&(radius=5),this.beginPath(),this.moveTo(x+radius,y),this.lineTo(x+width-radius,y),this.quadraticCurveTo(x+width,y,x+width,y+radius),this.lineTo(x+width,y+height-radius),this.quadraticCurveTo(x+width,y+height,x+width-radius,y+height),this.lineTo(x+radius,y+height),this.quadraticCurveTo(x,y+height,x,y+height-radius),this.lineTo(x,y+radius),this.quadraticCurveTo(x,y,x+radius,y),this.closePath(),stroke&&this.stroke(),fill&&this.fill(),this.restore()},CanvasRenderingContext2D.prototype.polygon=function(x,y,fill,stroke){this.save(),"undefined"==typeof stroke&&(stroke=!0),this.beginPath();var len=x.length;this.moveTo(x[0],y[0]);for(var i=1;i<len;i++)this.lineTo(x[i],y[i]);this.closePath(),stroke&&this.stroke(),fill&&this.fill(),this.restore()},CanvasRenderingContext2D.prototype.eqTriangle=function(side,cx,cy){this.save();var h=side*(Math.sqrt(3)/2);this.beginPath(),this.moveTo(cx,cy-h/2),this.lineTo(cx-side/2,cy+h/2),this.lineTo(cx+side/2,cy+h/2),this.lineTo(cx,cy-h/2),this.closePath(),this.stroke(),this.fill(),this.restore()},"undefined"==typeof String.prototype.startsWith&&(String.prototype.startsWith=function(aString){return!(this.length<aString.length)&&this.substr(0,aString.length)==aString}),"undefined"==typeof String.prototype.endsWith&&(String.prototype.endsWith=function(aString){return!(this.length<aString.length)&&this.substr(this.length-aString.length,aString.length)==aString}),"undefined"==typeof String.prototype.includes&&(String.prototype.includes=function(it){return this.indexOf(it)!=-1}),"undefined"==typeof String.prototype.splitLines&&Object.defineProperty(String.prototype,"splitLines",{value:function(){return this.split(/\r\n|\n|\r/gm)},enumerable:!1,configurable:!1}),"undefined"==typeof Uint8Array.prototype.toText&&(Uint8Array.prototype.toText=function(){var i,len,str;for(str="",i=0,len=this.byteLength;i<len;i++)str+=String.fromCharCode(this[i]);return str});var log2=Math.log(2);"undefined"==typeof Math.log2&&(Math.log2=function(x){return Math.log(x)/log2}),"undefined"==typeof Function.prototype.bind&&(Function.prototype.bind=function(){var fn=this,args=Array.prototype.slice.call(arguments),object=args.shift();return function(){return fn.apply(object,args.concat(Array.prototype.slice.call(arguments)))}}),Date.now||(Date.now=function(){return(new Date).getTime()}),Object.keys||(Object.keys=function(){"use strict";var hasOwnProperty=Object.prototype.hasOwnProperty,hasDontEnumBug=!{toString:null}.propertyIsEnumerable("toString"),dontEnums=["toString","toLocaleString","valueOf","hasOwnProperty","isPrototypeOf","propertyIsEnumerable","constructor"],dontEnumsLength=dontEnums.length;return function(obj){if("object"!=typeof obj&&("function"!=typeof obj||null===obj))throw new TypeError("Object.keys called on non-object");var prop,i,result=[];for(prop in obj)hasOwnProperty.call(obj,prop)&&result.push(prop);if(hasDontEnumBug)for(i=0;i<dontEnumsLength;i++)hasOwnProperty.call(obj,dontEnums[i])&&result.push(dontEnums[i]);return result}}()),Array.isArray||(Array.isArray=function(arg){return"[object Array]"===Object.prototype.toString.call(arg)});var igv=function(igv){function selectElement(array,k){var i,heap=new BinaryHeap;for(i=0;i<array.length;i++){var item=array[i];if(heap.content.length<k||item>heap.content[0]){if(heap.content.length===k){heap.pop()}heap.push(item)}}return heap.content[0]}function BinaryHeap(){this.content=[]}return igv.Math={mean:function(array){var i,t=0,n=0;for(i=0;i<array.length;i++)isNaN(array[i])||(t+=array[i],n++);return n>0?t/n:0},meanAndStdev:function(array){var v,i,t=0,t2=0,n=0;for(i=0;i<array.length;i++)v=array[i],isNaN(v)||(t+=v,t2+=v*v,n++);return n>0?{mean:t/n,stdev:Math.sqrt(t2-t*t/n)}:{mean:0,stdev:0}},percentile:function(array,p){if(0!==array.length){var k=Math.floor(array.length*((100-p)/100));return 0===k?(array.sort(function(a,b){return b-a}),array[k]):selectElement(array,k)}},clamp:function(value,min,max){return Math.min(Math.max(value,min),max)}},BinaryHeap.prototype={push:function(element){this.content.push(element),this.bubbleUp(this.content.length-1)},pop:function(){var result=this.content[0],end=this.content.pop();return this.content.length>0&&(this.content[0]=end,this.sinkDown(0)),result},remove:function(node){for(var length=this.content.length,i=0;i<length;i++)if(this.content[i]==node){var end=this.content.pop();if(i==length-1)break;this.content[i]=end,this.bubbleUp(i),this.sinkDown(i);break}},size:function(){return this.content.length},bubbleUp:function(n){for(var element=this.content[n],score=element;n>0;){var parentN=Math.floor((n+1)/2)-1,parent=this.content[parentN];if(score>=parent)break;this.content[parentN]=element,this.content[n]=parent,n=parentN}},sinkDown:function(n){for(var length=this.content.length,element=this.content[n],elemScore=element;;){var child2N=2*(n+1),child1N=child2N-1,swap=null;if(child1N<length){var child1=this.content[child1N],child1Score=child1;child1Score<elemScore&&(swap=child1N)}if(child2N<length){var child2=this.content[child2N],child2Score=child2;child2Score<(null==swap?elemScore:child1Score)&&(swap=child2N)}if(null==swap)break;this.content[n]=this.content[swap],this.content[swap]=element,n=swap}}},igv}(igv||{}),igv=function(igv){var self=this;return igv.genericContainer=function($parent,config,closeHandler){var $generic_container,$header,$fa;return $generic_container=$("<div>",{class:"igv-generic-container"}),$parent.append($generic_container),config&&config.width&&$generic_container.width(config.width),config&&config.height&&$generic_container.height(config.height),config&&config.classes&&$generic_container.addClass(config.classes.join(" ")),$header=$("<div>"),$generic_container.append($header),$fa=$("<i>",{class:"fa fa-times"}),$header.append($fa),$fa.on("click",function(e){closeHandler()}),$generic_container},igv.makeDraggable=function($target,$handle){$handle.on("mousedown",function(event){function move(e){e.preventDefault(),e.stopPropagation(),$target.css({left:self.initX+e.clientX-self.mousePressX,top:self.initY+e.clientY-self.mousePressY})}event.preventDefault(),event.stopPropagation(),self.initX=$target.position().left,self.initY=$target.position().top,self.mousePressX=event.clientX,self.mousePressY=event.clientY,$handle.on("mousemove",move),window.addEventListener("mouseup",function(){$handle.off("mousemove")},!1)})},igv.getExtension=function(config){var path,filename,index;if(void 0!==config.url)return path=igv.isFilePath(config.url)?config.url.name:config.url,filename=path.toLowerCase(),index=filename.indexOf("?"),index>0&&(filename=filename.substr(0,index)),filename.endsWith(".gz")?filename=filename.substr(0,filename.length-3):(filename.endsWith(".txt")||filename.endsWith(".tab"))&&(filename=filename.substr(0,filename.length-4)),index=filename.lastIndexOf("."),index<0?filename:filename.substr(1+index)},igv.filenameOrURLHasSuffix=function(fileOrURL,suffix){var str=fileOrURL instanceof File?fileOrURL.name:fileOrURL;return str.toLowerCase().endsWith(suffix)},igv.isFilePath=function(path){return path instanceof File},igv.makeToggleButton=function(buttonOnLabel,buttonOffLabel,configurationKey,get$Target,continuation){function skin$ButtonWithTruthFunction($b,truth,onLabel,offLabel){$b.removeClass("igv-nav-bar-toggle-button-on"),$b.removeClass("igv-nav-bar-toggle-button-off"),!0===truth?($b.addClass("igv-nav-bar-toggle-button-off"),$b.text(offLabel),continuation&&continuation()):($b.addClass("igv-nav-bar-toggle-button-on"),$b.text(onLabel))}var $button=$('<div class="igv-nav-bar-toggle-button">');return skin$ButtonWithTruthFunction($button,!0===igv.browser.config[configurationKey],buttonOnLabel,buttonOffLabel),$button.click(function(){var $target=get$Target();igv.browser.config[configurationKey]=!igv.browser.config[configurationKey],$target.toggle(),skin$ButtonWithTruthFunction($(this),$target.is(":visible"),buttonOnLabel,buttonOffLabel)}),$button},igv.presentAlert=function(string){console.trace(),igv.alert.$dialogLabel.text(string),igv.alert.show(void 0),igv.popover.hide()},igv.attachDialogCloseHandlerWithParent=function($parent,closeHandler){var $container=$("<div>"),$fa=$('<i class="fa fa-times">');$container.append($fa),$parent.append($container),$fa.hover(function(){$fa.removeClass("fa-times"),$fa.addClass("fa-times-circle"),$fa.css({color:"#222"})},function(){$fa.removeClass("fa-times-circle"),$fa.addClass("fa-times"),$fa.css({color:"#444"})}),$fa.click(closeHandler)},igv.spinner=function(size){var $container,$spinner;return $spinner=$('<i class="fa fa-spinner fa-spin">'),size&&$spinner.css("font-size",size),$container=$('<div class="igv-spinner-container">'),$container.append($spinner[0]),$container[0]},igv.getSpinnerObjectWithParentElement=function(parentElement){return $(parentElement).find("div.igv-spinner-container")},igv.startSpinnerAtParentElement=function(parentElement){var spinnerObject=igv.getSpinnerObjectWithParentElement(parentElement);spinnerObject&&spinnerObject.show()},igv.stopSpinnerAtParentElement=function(parentElement){var spinnerObject=igv.getSpinnerObjectWithParentElement(parentElement);spinnerObject&&spinnerObject.hide()},igv.parseUri=function(str){for(var o=igv.parseUri.options,m=o.parser[o.strictMode?"strict":"loose"].exec(str),uri={},i=14;i--;)uri[o.key[i]]=m[i]||"";return uri[o.q.name]={},uri[o.key[12]].replace(o.q.parser,function($0,$1,$2){$1&&(uri[o.q.name][$1]=$2)}),uri},igv.parseUri.options={strictMode:!1,key:["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"],q:{name:"queryKey",parser:/(?:^|&)([^&=]*)=?([^&]*)/g},parser:{strict:/^(?:([^:\/?#]+):)?(?:\/\/((?:(([^:@]*)(?::([^:@]*))?)?@)?([^:\/?#]*)(?::(\d*))?))?((((?:[^?#\/]*\/)*)([^?#]*))(?:\?([^#]*))?(?:#(.*))?)/,loose:/^(?:(?![^:@]+:[^:@\/]*@)([^:\/?#.]+):)?(?:\/\/)?((?:(([^:@]*)(?::([^:@]*))?)?@)?([^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/}},igv.domElementRectAsString=function(element){return" 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+compression===NONE?(options.mimeType="text/plain; charset=x-user-defined",igv.xhr.load(url,options)):(options.responseType="arraybuffer",igv.xhr.load(url,options).then(function(data){return arrayBufferToString(data,compression)}))}function isCrossDomain(url){var origin=window.location.origin;return!url.startsWith(origin)}function addOauthHeaders(headers){headers["Cache-Control"]="no-cache";var acToken=oauth.google.access_token;return acToken&&!headers.hasOwnProperty("Authorization")&&(headers.Authorization="Bearer "+acToken),headers}function mapUrl(url){return url.includes("//www.dropbox.com")?url.replace("//www.dropbox.com","//dl.dropboxusercontent.com"):url.includes("//drive.google.com")?igv.Google.driveDownloadURL(url):url}function arrayBufferToString(arraybuffer,compression){var plain,inflate;compression===GZIP?(inflate=new Zlib.Gunzip(new Uint8Array(arraybuffer)),plain=inflate.decompress()):plain=compression===BGZF?new Uint8Array(igv.unbgzf(arraybuffer)):new Uint8Array(arraybuffer);for(var result="",i=0,len=plain.length;i<len;i++)result+=String.fromCharCode(plain[i]);return result}function isGoogleURL(url){return url.includes("googleapis")}var NONE=0,GZIP=1,BGZF=2;igv.xhr={},igv.xhr.load=function(url,options){function applyOauthToken(token){return token&&(options.token=token),getLoadPromise(url,options)}function getLoadPromise(url,options){return new Promise(function(fullfill,reject){function handleError(message){if(!reject)throw new Error(message);reject(new Error(message))}var header_keys,key,value,i,xhr=new XMLHttpRequest,sendData=options.sendData||options.body,method=options.method||(sendData?"POST":"GET"),range=options.range,responseType=options.responseType,contentType=options.contentType,mimeType=options.mimeType,headers=options.headers||{},withCredentials=(0==navigator.vendor.indexOf("Apple")&&/\sSafari\//.test(navigator.userAgent),options.withCredentials);if(url=url.startsWith("gs://")?igv.Google.translateGoogleCloudURL(url):url,options.token&&(headers.Authorization="Bearer "+options.token),isGoogleURL(url)?(url=igv.Google.addApiKey(url),headers=headers||{},igv.Google.addGoogleHeaders(headers)):options.oauth&&addOauthHeaders(headers),range&&(url+=url.includes("?")?"&":"?",url+="someRandomSeed="+Math.random().toString(36)),xhr.open(method,url),range){var rangeEnd=range.size?range.start+range.size-1:"";xhr.setRequestHeader("Range","bytes="+range.start+"-"+rangeEnd)}if(contentType&&xhr.setRequestHeader("Content-Type",contentType),mimeType&&xhr.overrideMimeType(mimeType),responseType&&(xhr.responseType=responseType),headers)for(header_keys=Object.keys(headers),i=0;i<header_keys.length;i++)key=header_keys[i],value=headers[key],xhr.setRequestHeader(key,value);withCredentials===!0&&(xhr.withCredentials=!0),xhr.onload=function(event){0==xhr.status||xhr.status>=200&&xhr.status<=300?range&&206!=xhr.status?handleError("ERROR: range-byte header was ignored for url: "+url):fullfill(xhr.response):handleError(416===xhr.status?"Unsatisfiable range":xhr.status)},xhr.onerror=function(event){isCrossDomain(url)&&!options.crossDomainRetried&&igv.browser&&igv.browser.crossDomainProxy&&url!=igv.browser.crossDomainProxy?(options.sendData="url="+url,options.crossDomainRetried=!0,igv.xhr.load(igv.browser.crossDomainProxy,options).then(fullfill)):handleError("Error accessing resource: "+url+" Status: "+xhr.status)},xhr.ontimeout=function(event){handleError("Timed out")},xhr.onabort=function(event){console.log("Aborted"),reject(new igv.AbortLoad)};try{xhr.send(sendData)}catch(e){reject(e)}})}if(url=mapUrl(url),options||(options={}),options.oauthToken){var token=_.isFunction(options.oauthToken)?options.oauthToken():options.oauthToken;return token.then&&_.isFunction(token.then)?token.then(applyOauthToken):applyOauthToken(token)}return getLoadPromise(url,options)},igv.xhr.loadArrayBuffer=function(url,options){return url instanceof File?loadFileSlice(url,options):(void 0===options&&(options={}),options.responseType="arraybuffer",igv.xhr.load(url,options))},igv.xhr.loadJson=function(url,options){var method=options.method||(options.sendData?"POST":"GET");return"POST"==method&&(options.contentType="application/json"),new Promise(function(fullfill,reject){igv.xhr.load(url,options).then(function(result){fullfill(result?JSON.parse(result):result)}).catch(reject)})},igv.xhr.loadString=function(path,options){return path instanceof File?loadStringFromFile(path,options):loadStringFromUrl(path,options)},igv.AbortLoad=function(){};const href=window.document.location.href;if(!href.includes("localhost")&&!href.includes("127.0.0.1")){var url="https://data.broadinstitute.org/igv/projects/current/counter_igvjs.php?version=0";igv.xhr.load(url).then(function(ignore){console.log(ignore)}).catch(function(error){console.log(error)})}return igv}(igv||{}),igv=function(igv){function searchAll(interval,node,results){return node.interval.overlaps(interval)&&results.push(node.interval),node.left!=NIL&&node.left.max>=interval.low&&searchAll.call(this,interval,node.left,results),node.right!=NIL&&node.right.min<=interval.high&&searchAll.call(this,interval,node.right,results),results}function leftRotate(x){var y=x.right;x.right=y.left,y.left!=NIL&&(y.left.parent=x),y.parent=x.parent,x.parent==NIL?this.root=y:x.parent.left==x?x.parent.left=y:x.parent.right=y,y.left=x,x.parent=y,applyUpdate.call(this,x)}function rightRotate(x){var y=x.left;x.left=y.right,y.right!=NIL&&(y.right.parent=x),y.parent=x.parent,x.parent==NIL?this.root=y:x.parent.right==x?x.parent.right=y:x.parent.left=y,y.right=x,x.parent=y,applyUpdate.call(this,x)}function applyUpdate(node){for(;node!=NIL;){var nodeMax=node.left.max>node.right.max?node.left.max:node.right.max,intervalHigh=node.interval.high;node.max=nodeMax>intervalHigh?nodeMax:intervalHigh;var nodeMin=node.left.min<node.right.min?node.left.min:node.right.min,intervalLow=node.interval.low;node.min=nodeMin<intervalLow?nodeMin:intervalLow,node=node.parent}}function Interval(low,high,value){this.low=low,this.high=high,this.value=value}function Node(interval){this.parent=NIL,this.left=NIL,this.right=NIL,this.interval=interval,this.color=RED}var BLACK=1,RED=2,NIL={};return NIL.color=BLACK,NIL.parent=NIL,NIL.left=NIL,NIL.right=NIL,igv.IntervalTree=function(){this.root=NIL},igv.IntervalTree.prototype.insert=function(start,end,value){var interval=new Interval(start,end,value),x=new Node(interval);for(this.treeInsert(x),x.color=RED;x!=this.root&&x.parent.color==RED;)if(x.parent==x.parent.parent.left){var y=x.parent.parent.right;y.color==RED?(x.parent.color=BLACK,y.color=BLACK,x.parent.parent.color=RED,x=x.parent.parent):(x==x.parent.right&&(x=x.parent,leftRotate.call(this,x)),x.parent.color=BLACK,x.parent.parent.color=RED,rightRotate.call(this,x.parent.parent))}else{var y=x.parent.parent.left;y.color==RED?(x.parent.color=BLACK,y.color=BLACK,x.parent.parent.color=RED,x=x.parent.parent):(x==x.parent.left&&(x=x.parent,rightRotate.call(this,x)),x.parent.color=BLACK,x.parent.parent.color=RED,leftRotate.call(this,x.parent.parent))}this.root.color=BLACK},igv.IntervalTree.prototype.findOverlapping=function(start,end){var searchInterval=new Interval(start,end,0);if(this.root===NIL)return[];var intervals=searchAll.call(this,searchInterval,this.root,[]);return intervals.length>1&&intervals.sort(function(i1,i2){return i1.low-i2.low}),intervals},igv.IntervalTree.prototype.logIntervals=function(){function logNode(node,indent){for(var space="",i=0;i<indent;i++)space+=" ";console.log(space+node.interval.low+" "+node.interval.high),indent+=5,node.left!=NIL&&logNode(node.left,indent),node.right!=NIL&&logNode(node.right,indent)}logNode(this.root,0)},igv.IntervalTree.prototype.mapIntervals=function(func){function applyInterval(node){func(node.interval),node.left!=NIL&&applyInterval(node.left),node.right!=NIL&&applyInterval(node.right)}applyInterval(this.root)},igv.IntervalTree.prototype.treeInsert=function(x){for(var node=this.root,y=NIL;node!=NIL;)y=node,node=x.interval.low<=node.interval.low?node.left:node.right;x.parent=y,y==NIL?(this.root=x,x.left=x.right=NIL):x.interval.low<=y.interval.low?y.left=x:y.right=x,applyUpdate.call(this,x)},Interval.prototype.equals=function(other){return!!other&&(this==other||this.low==otherInterval.low&&this.high==otherInterval.high)},Interval.prototype.compareTo=function(other){return this.low<other.low?-1:this.low>other.low?1:this.high<other.high?-1:this.high>other.high?1:0},Interval.prototype.overlaps=function(other){try{return this.low<=other.high&&other.low<=this.high}catch(e){igv.presentAlert(e)}},igv}(igv||{}),igv=function(igv){var log=function(txt){};return igv.KaryoPanel=function($parent,config){var contentDiv,canvas,tipCtx,tipCanvas,self=this;this.$container=$('<div class="igv-karyo-div">'),$parent.append(this.$container),!0===config.showKaryo?this.$container.show():this.$container.hide(),this.$karyoPanelToggle=igv.makeToggleButton("Karyotype Panel","Karyotype Panel","showKaryo",function(){return self.$container},void 0),this.ideograms=null,igv.guichromosomes=[],contentDiv=$('<div class="igv-karyo-content-div"></div>')[0],this.$container.append(contentDiv),canvas=$('<canvas class="igv-karyo-canvas"></canvas>')[0],$(contentDiv).append(canvas),canvas.setAttribute("width",contentDiv.offsetWidth),canvas.setAttribute("height",contentDiv.offsetHeight),this.canvas=canvas,this.ctx=canvas.getContext("2d"),tipCanvas=document.createElement("canvas"),tipCanvas.style.position="absolute",tipCanvas.style.width="100px",tipCanvas.style.height="20px",tipCanvas.style.left="-2000px",tipCanvas.setAttribute("width","100px"),tipCanvas.setAttribute("height","20px"),tipCtx=tipCanvas.getContext("2d"),contentDiv.appendChild(tipCanvas),this.canvas.onmousemove=function(e){for(var mouseCoords=igv.translateMouseCoordinates(e,canvas),mouseX=mouseCoords.x,mouseY=mouseCoords.y,hit=!1,i=0;i<igv.guichromosomes.length;i++){var g=igv.guichromosomes[i];if(g.x<mouseX&&g.right>mouseX&&g.y<mouseY&&g.bottom>mouseY){var dy=mouseY-g.y,bp=Math.round(g.size*dy/g.h);tipCanvas.style.left=Math.round(mouseX+20)+"px",tipCanvas.style.top=Math.round(mouseY-5)+"px",tipCtx.clearRect(0,0,tipCanvas.width,tipCanvas.height),tipCtx.fillStyle="rgb(255,255,220)",tipCtx.fillRect(0,0,tipCanvas.width,tipCanvas.height),tipCtx.fillStyle="rgb(0,0,0)";var mb=Math.round(bp/1e6);tipCtx.fillText(g.name+" @ "+mb+" MB",3,12),hit=!0;break}}hit||(tipCanvas.style.left="-2000px")},this.canvas.onclick=function(e){var mouseCoords=igv.translateMouseCoordinates(e,canvas),mouseX=mouseCoords.x,mouseY=mouseCoords.y;igv.navigateKaryo(mouseX,mouseY)}},igv.navigateKaryo=function(mouseX,mouseY){for(var i=0;i<igv.guichromosomes.length;i++){var g=igv.guichromosomes[i];if(g.x<mouseX&&g.right>mouseX&&g.y<mouseY&&g.bottom>mouseY){var dy=mouseY-g.y,center=Math.round(g.size*dy/g.h);log("Going to position "+center),igv.browser.goto(g.name,center,void 0);break}}igv.browser.update()},igv.KaryoPanel.prototype.resize=function(){var canvas;void 0!==igv.browser.genomicStateList&&(canvas=this.canvas,canvas.setAttribute("width",canvas.clientWidth),canvas.setAttribute("height",canvas.clientHeight),log("Resize called: width="+canvas.clientWidth+"/"+canvas.clientHeight),this.ideograms=void 0,this.repaint())},igv.KaryoPanel.prototype.repaint=function(){function drawImage(){image=document.createElement("canvas"),image.width=w,image.height=h;var bufferCtx=image.getContext("2d"),nr=0,col=0,row=1,y=top;igv.guichromosomes=[];for(chr in chromosomes){if(nr>nrchr)break;1==row&&2==nrrows&&nr+1>nrchr/2&&(row=2,col=0,y=y+chrheight+top),nr++,col++;var chromosome=genome.getChromosome(chr);"chrM"!=chr||chromosome.bpLength||(chromosome.bpLength=16e3),chromosome.x=col*totalchrwidth,chromosome.y=y;var guichrom=new Object;guichrom.name=chr,igv.guichromosomes.push(guichrom),drawIdeogram(guichrom,chromosome.x,chromosome.y,chromosome,bufferCtx,chrwidth,chrheight,maxLen)}this.ideograms=image,log("============= PROCESSING "+igv.browser.trackViews.length+" TRACKS");for(var tracknr=0,i=0;i<igv.browser.trackViews.length;i++){var trackPanel=igv.browser.trackViews[i],track=trackPanel.track;if(track.getSummary&&track.loadSummary){log("Found track with summary: "+track.name);var source=track;window.source=track,source.loadSummary("chr1",0,1e6,function(featureList){if(featureList){nr=0;for(chr in chromosomes){var guichrom=igv.guichromosomes[nr];nr++,guichrom&&guichrom.size&&loadfeatures(source,chr,0,guichrom.size,guichrom,bufferCtx,tracknr)}}}),tracknr++}}}function drawFeatures(source,featurelist,guichrom,ideogramLeft,top,bufferCtx,ideogramWidth,ideogramHeight,longestChr,tracknr){if(genome&&guichrom&&featurelist){var len=featurelist.length;if(0!=len)for(var scale=ideogramHeight/longestChr,dx=1,i=0;i<featurelist.length;i++){var feature=featurelist[i],color="rgb(0,0,150)",value=feature.score;source.getColor&&(color=source.getColor(value));var starty=scale*feature.start+top,endy=scale*feature.end+top,dy=Math.max(.01,endy-starty);bufferCtx.fillStyle=color,bufferCtx.fillRect(ideogramLeft+ideogramWidth+2*tracknr+1,starty,dx,dy)}}}function drawIdeogram(guichrom,ideogramLeft,top,chromosome,bufferCtx,ideogramWidth,ideogramHeight,longestChr){if(genome&&chromosome){var cytobands=genome.getCytobands(chromosome.name);if(cytobands){var centerx=ideogramLeft+ideogramWidth/2,xC=[],yC=[],len=cytobands.length,scale=ideogramHeight/longestChr;guichrom.x=ideogramLeft,guichrom.y=top,guichrom.w=ideogramWidth,guichrom.right=ideogramLeft+ideogramWidth;var last=0,lastPY=-1;if(len>0)last=cytobands[len-1].end,guichrom.h=scale*last,guichrom.size=last;else{var MINH=5;lastPY=top+MINH,guichrom.h=MINH,guichrom.size=MINH/scale}if(guichrom.longest=longestChr,guichrom.bottom=top+guichrom.h,len>0)for(var i=0;i<cytobands.length;i++){var cytoband=cytobands[i],starty=scale*cytoband.start+top,endy=scale*cytoband.end+top;if(endy>lastPY)if("c"==cytoband.type)"p"==cytoband.name.charAt(0)?(yC[0]=starty,xC[0]=ideogramWidth+ideogramLeft,yC[1]=starty,xC[1]=ideogramLeft,yC[2]=endy,xC[2]=centerx):(yC[0]=endy,xC[0]=ideogramWidth+ideogramLeft,yC[1]=endy,xC[1]=ideogramLeft,yC[2]=starty,xC[2]=centerx),bufferCtx.fillStyle="rgb(220, 150, 100)",bufferCtx.strokeStyle="rgb(150, 0, 0)",bufferCtx.polygon(xC,yC,1,0);else{var dy=endy-starty;bufferCtx.fillStyle=getCytobandColor(cytoband),bufferCtx.fillRect(ideogramLeft,starty,ideogramWidth,dy)}lastPY=endy}}bufferCtx.fillStyle=null,bufferCtx.lineWidth=1,bufferCtx.strokeStyle="darkgray";var r=ideogramWidth/2;bufferCtx.roundRect(ideogramLeft,top-r/2,ideogramWidth,lastPY-top+r,ideogramWidth/2,0,1),bufferCtx.font="bold 10px Arial",bufferCtx.fillStyle="rgb(0, 0, 0)";var name=chromosome.name;name.length>3&&(name=name.substring(3)),bufferCtx.fillText(name,ideogramLeft+ideogramWidth/2-3*name.length,top-10)}}function getCytobandColor(data){if("c"==data.type)return"rgb(150, 10, 10)";var stain=data.stain,shade=230;"p"==data.type&&(shade=Math.floor(230-stain/100*230));var c=stainColors[shade];return null==c&&(c="rgb("+shade+","+shade+","+shade+")",stainColors[shade]=c),c}function loadfeatures(source,chr,start,end,guichrom,bufferCtx,tracknr){source.getSummary(chr,start,end,function(featureList){featureList&&(len=featureList.length,drawFeatures(source,featureList,guichrom,guichrom.x,guichrom.y,bufferCtx,chrwidth,chrheight,maxLen,tracknr),me.repaint())})}if(void 0!==this.canvasWidth&&void 0!==this.canvasHeight){var genome,genomicState,referenceFrame,stainColors,w,h;if(void 0!==igv.browser.genomicStateList&&(genome=igv.browser.genome,genome.ideograms&&(genomicState=_.first(igv.browser.genomicStateList),referenceFrame=genomicState.referenceFrame,stainColors=[],w=this.canvas.width,h=this.canvas.height,this.ctx.clearRect(0,0,w,h),genome&&referenceFrame&&genome.chromosomes&&referenceFrame.chrName))){var chromosomes=genome.chromosomes,image=this.ideograms;if(chromosomes.length<1)return void log("No chromosomes yet, returning");var nrchr=24,nrrows=1;w<300&&(nrrows=2);var totalchrwidth=Math.min(50,(w-20)/(nrchr+2)*nrrows),chrwidth=Math.min(20,totalchrwidth/2),top=25,chrheight=(h-25)/nrrows-top,longestChr=genome.getLongestChromosome(),cytobands=genome.getCytobands(longestChr.name);if(cytobands){var me=this,maxLen=cytobands[cytobands.length-1].end;image&&null!=image||drawImage.call(this),this.ctx.drawImage(image,0,0),this.ctx.save();var chr=referenceFrame.chrName;this.genome&&(chr=this.genome.getChromosomeName(chr));var chromosome=igv.browser.genome.getChromosome(chr);if(chromosome){var ideoScale=longestChr.bpLength/chrheight,boxPY1=chromosome.y-3+Math.round(referenceFrame.start/ideoScale),boxHeight=Math.max(3,igv.browser.viewportContainerWidth()/genomicState.locusCount*referenceFrame.bpPerPixel/ideoScale);this.ctx.strokeStyle="rgb(150, 0, 0)",this.ctx.lineWidth=2,this.ctx.strokeRect(chromosome.x-3,boxPY1,chrwidth+6,boxHeight+6),this.ctx.restore()}else log("Could not find chromosome "+chr)}}}},igv}(igv||{}),oauth=function(oauth){if(!oauth.google){var tokenType,expiresIn,user,OAUTHURL="https://accounts.google.com/o/oauth2/auth?",VALIDURL="https://www.googleapis.com/oauth2/v1/tokeninfo?access_token=",REDIRECT="http://snorlax.ucsd.edu:8659/static/emptyPage.html",_url=OAUTHURL+"scope=https://www.googleapis.com/auth/cloud-platform https://www.googleapis.com/auth/genomics https://www.googleapis.com/auth/devstorage.read_only https://www.googleapis.com/auth/userinfo.profile https://www.googleapis.com/auth/userinfo.email&state=%2Fprofile&redirect_uri=http%3A%2F%2Fsnorlax.ucsd.edu%3A8659%2Fstatic%2FemptyPage.html&response_type=token&client_id=661332306814-8nt29308rppg325bkq372vli8nm3na14.apps.googleusercontent.com",loggedIn=!1;oauth.google={login:function(callback){var win=window.open(_url,"windowname1","width=800, height=600"),pollTimer=window.setInterval(function(){try{if(console.log(win.document.URL),win.document.URL.indexOf(REDIRECT)!=-1){window.clearInterval(pollTimer);var url=win.document.URL;oauth.google.access_token=oauth.google.gup(url,"access_token"),tokenType=oauth.google.gup(url,"token_type"),expiresIn=oauth.google.gup(url,"expires_in"),win.close(),oauth.google.validateToken(oauth.google.access_token),callback&&callback()}}catch(e){}},500)},validateToken:function(token){$.ajax({url:VALIDURL+token,data:null,success:function(responseText){oauth.google.getUserInfo(),loggedIn=!0},dataType:"jsonp"})},getUserInfo:function(){$.ajax({url:"https://www.googleapis.com/oauth2/v1/userinfo?access_token="+oauth.google.access_token,data:null,success:function(resp){user=resp,console.log(user)},dataType:"jsonp"})},gup:function(url,name){name=name.replace(/[\[]/,"\\[").replace(/[\]]/,"\\]");var regexS="[\\#&]"+name+"=([^&#]*)",regex=new RegExp(regexS),results=regex.exec(url);return null==results?"":results[1]}}}return oauth}(oauth||{}),igv=function(igv){return igv.oauth=oauth,igv}(igv||{}),igv=function(igv){return igv.isBlank=function(line){var meh=line.match(/\S+/g);return!meh},igv.isComment=function(line){var index=line.indexOf("#");return 0==index},igv.getQueryValue=function(name){name=name.replace(/[\[]/,"\\[").replace(/[\]]/,"\\]");var regexS="[\\?&]"+name+"=([^&#]*)",regex=new RegExp(regexS),results=regex.exec(window.location.href);return null==results?void 0:results[1]},igv}(igv||{}),igv=function(igv){return igv.ReferenceFrame=function(chrName,start,bpPerPixel){this.chrName=chrName,this.start=start,this.bpPerPixel=bpPerPixel},igv.ReferenceFrame.prototype.toPixels=function(bp){return bp/this.bpPerPixel},igv.ReferenceFrame.prototype.toBP=function(pixels){return this.bpPerPixel*pixels},igv.ReferenceFrame.prototype.shiftPixels=function(pixels){this.start+=pixels*this.bpPerPixel},igv.ReferenceFrame.prototype.description=function(){return"ReferenceFrame "+this.chrName+" "+igv.numberFormatter(Math.floor(this.start))+" bpp "+this.bpPerPixel},igv}(igv||{}),igv=function(igv){function coordinates(region,startBP,bpp){var ss,ee,width;return ss=Math.round((region.start-startBP)/bpp),ee=Math.round((region.end-startBP)/bpp),width=ee-ss,width<3&&(width=3,ss-=1),{x:ss,width:width}}var defaultHighlightColor="rgba(68, 134, 247, 0.25)";return igv.ROI=function(config){this.config=config,this.name=config.name,this.roiSource=new igv.FeatureSource(config),this.color=config.color||defaultHighlightColor},igv.ROI.prototype.getFeatures=function(chr,start,end){return this.roiSource.getFeatures(chr,start,end)},igv.ROI.prototype.draw=function(drawConfiguration){var endBP,region,coord,regions,len;if(regions=drawConfiguration.features){endBP=drawConfiguration.bpStart+(drawConfiguration.pixelWidth*drawConfiguration.bpPerPixel+1);for(var i=0,len=regions.length;i<len;i++)if(region=regions[i],!(region.end<drawConfiguration.bpStart)){if(region.start>endBP)break;coord=coordinates(region,drawConfiguration.bpStart,drawConfiguration.bpPerPixel),igv.graphics.fillRect(drawConfiguration.context,coord.x,0,coord.width,drawConfiguration.pixelHeight,{fillStyle:this.color})}}},igv}(igv||{}),igv=function(igv){return igv.ROISource=function(config){this.config=config||{},this.sourceType=void 0===config.sourceType?"file":config.sourceType,this.reader=new igv.FeatureFileReader(config),this.visibilityWindow=config.visibilityWindow},igv.ROISource.prototype.getRegions=function(chr,bpStart,bpEnd){var self=this;return new Promise(function(fulfill,reject){var genomicInterval;genomicInterval=new igv.GenomicInterval(chr,bpStart,bpEnd),self.reader.readFeatures(chr,genomicInterval.start,genomicInterval.end).then(function(features){fulfill(features)}).catch(reject)})},igv}(igv||{}),igv=function(igv){return igv.RulerSweeper=function(viewport,$viewport,$viewportContent,genomicState){this.viewport=viewport,this.$viewport=$viewport,this.$viewportContent=$viewportContent,this.genomicState=genomicState,this.$rulerSweeper=$('<div class="igv-ruler-sweeper-div">'),this.$viewportContent.append(this.$rulerSweeper),this.wholeGenomeLayout(this.$viewportContent.find(".igv-whole-genome-container")),this.addMouseHandlers()},igv.RulerSweeper.prototype.wholeGenomeLayout=function($container){var viewportWidth,extent,nameLast,chrLast,scraps,$div,$e,self=this;nameLast=_.last(igv.browser.genome.wgChromosomeNames),chrLast=igv.browser.genome.getChromosome(nameLast),extent=Math.floor(chrLast.bpLength/1e3)+igv.browser.genome.getCumulativeOffset(nameLast),viewportWidth=this.$viewport.width(),scraps=0,_.each(igv.browser.genome.wgChromosomeNames,function(name){var w,percentage;percentage=igv.browser.genome.getChromosome(name).bpLength/extent,percentage*viewportWidth<1?scraps+=percentage:($div=$("<div>"),$container.append($div),w=Math.floor(percentage*viewportWidth),$div.width(w),$e=$("<span>"),$div.append($e),$e.text(name),$div.on("click",function(e){var locusString,loci;self.$viewportContent.find(".igv-whole-genome-container").hide(),self.$viewportContent.find("canvas").show(),1===self.genomicState.locusCount?locusString=name:(loci=_.map(igv.browser.genomicStateList,function(g){return g.locusSearchString}),loci[self.genomicState.locusIndex]=name,locusString=loci.join(" ")),igv.browser.parseSearchInput(locusString)}))}),scraps*=viewportWidth,scraps=Math.floor(scraps),scraps>=1&&($div=$("<div>"),$container.append($div),$div.width(scraps),$e=$("<span>"),$div.append($e),$e.text("-"))},igv.RulerSweeper.prototype.disableMouseHandlers=function(){this.$viewport.off()},igv.RulerSweeper.prototype.addMouseHandlers=function(){var left,rulerSweepWidth,dx,self=this,isMouseDown=void 0,isMouseIn=void 0,mouseDownXY=void 0,mouseMoveXY=void 0,rulerSweepThreshold=1;this.disableMouseHandlers(),this.$viewport.on({mousedown:function(e){e.preventDefault(),e.stopPropagation(),isMouseDown=!0,mouseDownXY={x:e.offsetX,y:e.offsetY},left=mouseDownXY.x,rulerSweepWidth=0,self.$rulerSweeper.css({display:"inline",left:left+"px",width:rulerSweepWidth+"px"}),isMouseIn=!0},mousemove:igv.throttle(function(e){e.preventDefault(),e.stopPropagation(),isMouseDown&&isMouseIn&&(mouseMoveXY={x:e.offsetX,y:e.offsetY},dx=mouseMoveXY.x-mouseDownXY.x,rulerSweepWidth=Math.abs(dx),rulerSweepWidth>rulerSweepThreshold&&(self.$rulerSweeper.css({width:rulerSweepWidth+"px"}),dx<0&&(mouseDownXY.x+dx<0?(isMouseIn=!1,left=0):left=mouseDownXY.x+dx,self.$rulerSweeper.css({left:left+"px"}))))},10),mouseup:function(e){var extent,referenceFrame;e.preventDefault(),e.stopPropagation(),isMouseDown&&(isMouseDown=!1,isMouseIn=!1,self.$rulerSweeper.css({display:"none",left:"0px",width:"0px"}),referenceFrame=self.genomicState.referenceFrame,extent={},extent.start=referenceFrame.start+left*referenceFrame.bpPerPixel,extent.end=extent.start+rulerSweepWidth*referenceFrame.bpPerPixel,rulerSweepWidth>rulerSweepThreshold&&(igv.Browser.validateLocusExtent(igv.browser.genome.getChromosome(referenceFrame.chrName),extent),self.viewport.goto(referenceFrame.chrName,extent.start,extent.end)))}})},igv}(igv||{}),igv=function(igv){function tickLabelString(tickLabelNumber,index){var tickUnit,tickDivisor,string,number;return tickUnit=tickUnits[tickKeys[index]],tickDivisor=tickDivisors[tickKeys[index]],number=Math.round(tickLabelNumber/tickDivisor),string=igv.numberFormatter(number)+tickUnit}function createTickDivisiors(){var tickDivisiors={};return tickDivisiors[1e8.toString()]=1e6,tickDivisiors[5e7.toString()]=1e6,tickDivisiors[1e7.toString()]=1e6,tickDivisiors[5e6.toString()]=1e6,tickDivisiors[1e6.toString()]=1e6,tickDivisiors[5e5.toString()]=1e3,tickDivisiors[1e5.toString()]=1e3,tickDivisiors[5e4.toString()]=1e3,tickDivisiors[1e4.toString()]=1e3,tickDivisiors[5e3.toString()]=1e3,tickDivisiors[1e3.toString()]=1e3,tickDivisiors[500..toString()]=1,tickDivisiors[100..toString()]=1,tickDivisiors[50..toString()]=1,tickDivisiors[10..toString()]=1,tickDivisiors}function createTickValues(){var tickValues={};return _.each(tickNumbers,function(number){tickValues[number.toString()]=number}),tickValues}function createTickUnits(){var tickUnits={};return tickUnits[1e8.toString()]="mb",tickUnits[5e7.toString()]="mb",tickUnits[1e7.toString()]="mb",tickUnits[5e6.toString()]="mb",tickUnits[1e6.toString()]="mb",tickUnits[5e5.toString()]="kb",tickUnits[1e5.toString()]="kb",tickUnits[5e4.toString()]="kb",tickUnits[1e4.toString()]="kb",tickUnits[5e3.toString()]="kb",tickUnits[1e3.toString()]="kb",tickUnits[500..toString()]="b",tickUnits[100..toString()]="b",tickUnits[50..toString()]="b",tickUnits[10..toString()]="b",tickUnits}function updateLocusLabelWithGenomicState($label,state){$label.text(state.locusSearchString)}function rectWithCenterAndSize(center,size){var halfSize=sizeMake(size.width/2,size.height/2);return rectMake(center.x-halfSize.width,center.y-halfSize.height,size.width,size.height)}function rectMake(x,y,width,height){var rect={origin:{},size:{}};return rect.origin.x=x,rect.origin.y=y,rect.size.width=width,rect.size.height=height,rect}function sizeMake(width,height){return{width:width,height:height}}var TickSeparationThreshold,tickNumbers,tickKeys,tickDivisors,tickUnits,tickValues;return TickSeparationThreshold=50,tickNumbers=[1e8,5e7,1e7,5e6,1e6,5e5,1e5,5e4,1e4,5e3,1e3,500,100,50,10].reverse(),tickKeys=_.map(tickNumbers,function(number){return number.toString()}),tickDivisors=createTickDivisiors(),tickUnits=createTickUnits(),tickValues=createTickValues(),igv.RulerTrack=function(){this.height=40,this.name="",this.id="ruler",this.disableButtons=!0,this.ignoreTrackMenu=!0,this.order=-Number.MAX_VALUE,this.supportsWholeGenome=!0},igv.RulerTrack.prototype.createRulerSweeper=function(viewport,$viewport,$viewportContent,genomicState){void 0===this.rulerSweepers&&(this.rulerSweepers={}),this.rulerSweepers[genomicState.locusIndex.toString()]=new igv.RulerSweeper(viewport,$viewport,$viewportContent,genomicState)},igv.RulerTrack.prototype.locusLabelWithViewport=function(viewport){var locusLabel=$('<div class = "igv-viewport-content-ruler-div">');return locusLabel.text(viewport.genomicState.locusSearchString),locusLabel.click(function(e){var genomicState=viewport.genomicState,initialReferenceFrame=genomicState.initialReferenceFrame;genomicState.referenceFrame=new igv.ReferenceFrame(initialReferenceFrame.chrName,initialReferenceFrame.start,initialReferenceFrame.bpPerPixel),igv.browser.selectMultiLocusPanelWithGenomicState(genomicState)}),locusLabel},igv.RulerTrack.prototype.getFeatures=function(chr,bpStart,bpEnd){return new Promise(function(fulfill,reject){fulfill([])})},igv.RulerTrack.prototype.draw=function(options){var pixel,shim,tickHeight,rulerSweeper,index,tickSeparationPixel,tickLabelNumber,tickLabelText,toggle,rect,center,size,maximumLabelWidthPixel,bp,self=this;if(rulerSweeper=this.rulerSweepers[options.genomicState.locusIndex.toString()],"all"===options.referenceFrame.chrName.toLowerCase())rulerSweeper.$viewportContent.find("canvas").hide(),rulerSweeper.$viewportContent.find(".igv-whole-genome-container").show(),rulerSweeper.disableMouseHandlers();else{rulerSweeper.$viewportContent.find(".igv-whole-genome-container").hide(),rulerSweeper.$viewportContent.find("canvas").show(),rulerSweeper.addMouseHandlers(),updateLocusLabelWithGenomicState(options.viewport.$viewport.find(".igv-viewport-content-ruler-div"),options.genomicState),index=0;for(var i=0;i<_.size(tickKeys);i++)if(tickSeparationPixel=options.referenceFrame.toPixels(tickValues[tickKeys[i]]),tickSeparationPixel>TickSeparationThreshold){index=i;break}for(shim=2,tickHeight=6,bp=options.bpStart+options.referenceFrame.toBP(options.pixelWidth),bp=Math.min(options.genomicState.chromosome.bpLength,bp),maximumLabelWidthPixel=options.context.measureText(tickLabelString(bp,index)).width,pixel=0,toggle=0,tickLabelNumber=options.bpStart;pixel<options.pixelWidth;pixel+=tickSeparationPixel,toggle++,tickLabelNumber+=tickValues[tickKeys[index]])(0===toggle%2||maximumLabelWidthPixel<tickSeparationPixel)&&(tickLabelText=tickLabelString(tickLabelNumber,index),center={x:Math.round(pixel),y:self.height-tickHeight/.75},size={width:options.context.measureText(tickLabelText).width,height:2},rect=rectWithCenterAndSize(center,size),igv.graphics.fillText(options.context,tickLabelText,Math.round(pixel-rect.size.width/2),self.height-tickHeight/.75)),igv.graphics.strokeLine(options.context,Math.round(pixel),this.height-tickHeight,Math.round(pixel),this.height-shim);igv.graphics.strokeLine(options.context,0,this.height-shim,options.pixelWidth,this.height-shim)}},igv}(igv||{}),igv=function(igv){var SampleInformation=function(){this.attributes={},this.plinkLoaded=!1};return SampleInformation.prototype.loadPlinkFile=function(url,config){var self=this;return config||(config={}),new Promise(function(fulfill,reject){var options=igv.buildOptions(config);igv.xhr.loadString(url,options).then(function(data){var lines=data.splitLines();lines.forEach(function(line){var line_arr=line.split(" ");self.attributes[line_arr[1]]={familyId:line_arr[0],fatherId:line_arr[2],motherId:line_arr[3],sex:line_arr[4],phenotype:line_arr[5]}}),self.plinkLoaded=!0,fulfill(self.attributes)}).catch(reject)})},SampleInformation.prototype.getAttributes=function(sample){return this.attributes[sample]},SampleInformation.prototype.getAttributeNames=function(){return this.hasAttributes()?Object.keys(this.attributes[Object.keys(this.attributes)[0]]):[]},SampleInformation.prototype.hasAttributes=function(){return Object.keys(this.attributes).length>0},igv.sampleInformation=new SampleInformation,igv}(igv||{}),igv=function(igv){return igv.SequenceTrack=function(config){this.config=config,this.name="",this.id="sequence",this.sequenceType=config.sequenceType||"dna",this.height=25,this.disableButtons=!1,this.order=config.order||-Number.MAX_VALUE,this.ignoreTrackMenu=!1,this.supportsWholeGenome=!1,this.removable=!1,this.reversed=!1,this.frameTranslate=!1,this.complement={A:"T",C:"G",G:"C",T:"A"},this.translationDict={TTT:"F",TTC:"F",TTA:"L",TTG:"L",CTT:"L",CTC:"L",CTA:"L",CTG:"L",ATT:"I",ATC:"I",ATA:"I",ATG:"M",GTT:"V",GTC:"V",GTA:"V",GTG:"V",TCT:"S",TCC:"S",TCA:"S",TCG:"S",CCT:"P",CCC:"P",CCA:"P",CCG:"P",ACT:"T",ACC:"T",ACA:"T",ACG:"T",GCT:"A",GCC:"A",GCA:"A",GCG:"A",TAT:"Y",TAC:"Y",TAA:"STOP",TAG:"STOP",CAT:"H",CAC:"H",CAA:"Q",CAG:"Q",AAT:"N",AAC:"N",AAA:"K",AAG:"K",GAT:"D",GAC:"D",GAA:"E",
+GAG:"E",TGT:"C",TGC:"C",TGA:"STOP",TGG:"W",CGT:"R",CGC:"R",CGA:"R",CGG:"R",AGT:"S",AGC:"S",AGA:"R",AGG:"R",GGT:"G",GGC:"G",GGA:"G",GGG:"G"}},igv.SequenceTrack.prototype.menuItemList=function(popover){var self=this;return[{name:self.reversed?"Forward":"Reverse",click:function(){self.reversed=!self.reversed,popover.hide(),igv.browser.update()}},{name:self.frameTranslate?"Close Translation":"Three-frame Translate",click:function(){self.frameTranslate=!self.frameTranslate,popover.hide(),self.frameTranslate?(self.trackView.viewports[0].canvas.height=115,self.trackView.setTrackHeight(115)):(self.trackView.viewports[0].canvas.height=25,self.trackView.setTrackHeight(25))}}]},igv.SequenceTrack.prototype.translateSequence=function(seq){var threeFrame=[[],[],[]],self=this;return[0,1,2].forEach(function(fNum){for(var obj,st,idx=fNum;seq.length-idx>=3;)obj={},st=seq.slice(idx,idx+3),self.reversed&&(st=st.split("").reverse().join("")),obj.codons=st,obj.aminoA=self.translationDict[st],threeFrame[fNum].push(obj),obj=null,idx+=3}),threeFrame},igv.SequenceTrack.prototype.getFeatures=function(chr,bpStart,bpEnd,bpPerPixel){return new Promise(function(fulfill,reject){bpPerPixel&&bpPerPixel>1?fulfill(null):igv.browser.genome.sequence.getSequence(chr,bpStart,bpEnd).then(fulfill).catch(reject)})},igv.SequenceTrack.prototype.draw=function(options){var len,w,y,pos,offset,b,p0,p1,pc,c,h,transSeq,aaS,self=this,sequence=options.features,ctx=options.context,bpPerPixel=options.bpPerPixel,bpStart=options.bpStart,pixelWidth=options.pixelWidth,bpEnd=bpStart+pixelWidth*bpPerPixel+1;if(sequence){for(len=sequence.length,w=1/bpPerPixel,h=15,pos=bpStart;pos<=bpEnd;pos++)offset=pos-bpStart,offset<len&&(b=sequence[offset],this.reversed&&(b=this.complement[b.toUpperCase()]),p0=Math.floor(offset*w),p1=Math.floor((offset+1)*w),pc=Math.round((p0+p1)/2),c=this.color?this.color:"dna"===this.sequenceType?igv.nucleotideColors[b]:"rgb(0, 0, 150)",c||(c="gray"),bpPerPixel>.1?igv.graphics.fillRect(ctx,p0,5,p1-p0,h-5,{fillStyle:c}):igv.graphics.strokeText(ctx,b,pc-ctx.measureText(b).width/2,h,{strokeStyle:c}));this.frameTranslate&&(this.reversed?(transSeq=sequence.split("").map(function(cv){return self.complement[cv]}),transSeq=transSeq.join("")):transSeq=sequence,y=h,this.translateSequence(transSeq).forEach(function(arr,i){var fNum=i,h=25;y=0===i?y+10:y+30,arr.forEach(function(cv,idx){var xSeed=idx+fNum+2*idx;c=idx%2===0?"rgb(160,160,160)":"rgb(224,224,224)",p0=Math.floor(xSeed*w),p1=Math.floor((xSeed+3)*w),pc=Math.round((p0+p1)/2),cv.aminoA.indexOf("STOP")>-1?(c="rgb(255, 0, 0)",aaS="STOP"):aaS=cv.aminoA,"M"===cv.aminoA&&(c="rgb(0, 153, 0)",aaS="START"),igv.graphics.fillRect(ctx,p0,y,p1-p0,h,{fillStyle:c}),bpPerPixel<=.1&&igv.graphics.strokeText(ctx,aaS,pc-ctx.measureText(aaS).width/2,y+15)})}))}},igv}(igv||{}),igv=function(igv){return igv.XMLSession=function(xmlString){function extractTrackAttributes(track,config){var color,height,autoScale,altColor,dataRange,dataRangeCltn,windowFunction,visWindow,indexed;config.name=track.getAttribute("name"),color=track.getAttribute("color"),color&&(config.color="rgb("+color+")"),altColor=track.getAttribute("altColor"),color&&(config.altColor="rgb("+altColor+")"),height=track.getAttribute("height"),height&&(config.height=parseInt(height)),autoScale=track.getAttribute("autoScale"),autoScale&&(config.autoScale="true"===autoScale),windowFunction=track.getAttribute("windowFunction"),windowFunction&&(config.windowFunction=windowFunction),visWindow=track.getAttribute("visibilityWindow")||track.getAttribute("featureVisibilityWindow"),visWindow&&(config.visibilityWindow=visWindow),indexed=track.getAttribute("indexed"),indexed&&(config.indexed="true"===indexed),dataRangeCltn=track.getElementsByTagName("DataRange"),dataRangeCltn.length>0&&(dataRange=dataRangeCltn.item(0),autoScale||(config.min=parseInt(dataRange.getAttribute("minimum")),config.max=parseInt(dataRange.getAttribute("maximum"))),config.logScale="LOG"===dataRange.getAttribute("type"))}function processRootNode(){var elements,session,genome,locus,ucscID;elements=xmlDoc.getElementsByTagName("Session"),!elements||0===elements.length,session=elements.item(0),genome=session.getAttribute("genome"),locus=session.getAttribute("locus"),ucscID=session.getAttribute("ucscID"),igv.Genome.KnownGenomes.hasOwnProperty(genome)?self.reference={id:genome}:self.reference={fastaURL:genome},locus&&(self.locus=locus),ucscID&&(self.reference.id=ucscID)}var parser,xmlDoc,elements,self=this;parser=new DOMParser,xmlDoc=parser.parseFromString(xmlString,"text/xml"),processRootNode(),elements=xmlDoc.getElementsByTagName("Resource"),self.tracks=[];var resourceMap={};Array.from(elements).forEach(function(res,idx){var res={url:res.getAttribute("path"),order:idx};self.tracks.push(res),resourceMap[res.url]=res}),elements=xmlDoc.getElementsByTagName("Track"),elements&&elements.length>0&&(self.tracks=[],Array.from(elements).forEach(function(track){var id,res,subtracks,mergedTrack;subtracks=track.getElementsByTagName("Track"),subtracks&&subtracks.length>0?(mergedTrack={type:"merged",tracks:[]},extractTrackAttributes(track,mergedTrack),self.tracks.push(mergedTrack),Array.from(subtracks).forEach(function(t){t.processed=!0;var id,res;id=t.getAttribute("id"),res=resourceMap[id],res&&(mergedTrack.tracks.push(res),extractTrackAttributes(t,res),res.autoscale=!1,mergedTrack.height=res.height)})):track.processed||(id=track.getAttribute("id"),res=resourceMap[id],res&&(self.tracks.push(res),extractTrackAttributes(track,res)))}))},igv}(igv||{});Array.isArray||(Array.isArray=function(vArg){return"[object Array]"===Object.prototype.toString.call(vArg)}),"undefined"==typeof Set&&(Set=function(){this.data={},this.add.apply(this,arguments)},Set.prototype={add:function(){for(var key,i=0;i<arguments.length;i++)if(key=arguments[i],Array.isArray(key)||this._isPseudoArray(key))for(var j=0;j<key.length;j++)this._add(key[j]);else if(key instanceof Set){var self=this;key.each(function(val,key){self._add(key,val)})}else this._add(key);return this},addAll:function(arrayOrSet){if(Array.isArray(arrayOrSet)||this._isPseudoArray(arrayOrSet))for(var j=0;j<arrayOrSet.length;j++)this._add(arrayOrSet[j]);else if(arrayOrSet instanceof Set){var self=this;arrayOrSet.each(function(val,key){self._add(key,val)})}return this},_add:function(key,val){return"undefined"==typeof val&&(val=key),this.data[this._makeKey(key)]=val,this},_getKey:function(arg){return arg},_makeKey:function(arg){return arg},_removeItem:function(key){delete this.data[this._getKey(key)]},_isPseudoArray:function(item){return!1},delete:function(key){for(var item,j=0;j<arguments.length;j++)if(item=arguments[j],Array.isArray(item)||this._isPseudoArray(item))for(var i=0;i<item.length;i++)this._removeItem(item[i]);else this._removeItem(item);return this},has:function(key){return key=this._makeKey(key),Object.prototype.hasOwnProperty.call(this.data,key)},hasAll:function(args){var testSet=this.makeNew.apply(this,arguments),self=this;return testSet.every(function(data,key){return self.has(key)})},makeSet:function(args){return args instanceof Set?args:this.makeNew.apply(this,arguments)},equals:function(otherSet){return otherSet=this.makeSet(otherSet),this.isSubset(otherSet)&&this.isSuperset(otherSet)},isEmpty:function(){for(var key in this.data)if(this.has(key))return!1;return!0},size:function(){var size=0;for(var key in this.data)this.has(key)&&size++;return size},keys:function(){var results=[];return this.each(function(data){results.push(data)}),results},clear:function(){return this.data={},this},makeNew:function(){var newSet=new this.constructor;return arguments.length&&newSet.add.apply(newSet,arguments),newSet},union:function(otherSet){otherSet=this.makeSet(otherSet);var newSet=this.makeNew(this);return newSet.add(otherSet),newSet},intersection:function(otherSet){otherSet=this.makeSet(otherSet);var newSet=this.makeNew();return this.each(function(data,key){otherSet.has(key)&&newSet._add(key,data)}),newSet},difference:function(otherSet){otherSet=this.makeSet(otherSet);var newSet=this.makeNew();return this.each(function(data,key){otherSet.has(key)||newSet._add(key,data)}),newSet},notInBoth:function(otherSet){otherSet=this.makeSet(otherSet);var newSet=this.difference(otherSet);return newSet.add(otherSet.difference(this))},isSubset:function(otherSet){return otherSet=this.makeSet(otherSet),this.eachReturn(function(data,key){if(!otherSet.has(key))return!1})},isSuperset:function(otherSet){otherSet=this.makeSet(otherSet);var self=this;return otherSet.eachReturn(function(data,key){if(!self.has(key))return!1})},each:function(fn){return this.eachReturn(fn),this},eachReturn:function(fn){for(var key in this.data)if(this.has(key)&&fn.call(this,this.data[key],key)===!1)return!1;return!0},filter:function(fn){var newSet=this.makeNew();return this.each(function(data,key){fn.call(this,key)===!0&&newSet._add(key,data)}),newSet},map:function(fn){var newSet=this.makeNew();return this.each(function(data,key){var ret=fn.call(this,key);"undefined"!=typeof ret&&newSet._add(key,data)}),newSet},some:function(fn){var found=!1;return this.eachReturn(function(key){if(fn.call(this,key)===!0)return found=!0,!1}),found},every:function(fn){return this.eachReturn(fn)}},Set.prototype.constructor=Set);var igv=function(igv){var transformations;return igv.SVG=function(){this.svg="",this.contents=[],transformations=[]},igv.SVG.prototype.setProperties=function(properties){var str="";for(var key in properties)if(properties.hasOwnProperty(key)){var value=properties[key];"font-family"===key?str+="font-family:"+value+";":"font-size"===key?str+="font-size:"+value+";":"fillStyle"==key?str+="fill:"+value+";":"fill"===key?str+="fill:"+value+";":"strokeStyle"==key?str+="stroke:"+value+";":"stroke"===key?str+="stroke:"+value+";":"stroke-width"===key?str+="stroke-width:"+value+";":console.log("Unknown property: "+key)}return str},igv.SVG.prototype.setTransforms=function(transforms,x,y){var str="";for(var key in transforms){if(transforms.hasOwnProperty(key)){var value=transforms[key];"rotate"===key?(str+="rotate("+value.angle,str+=","+x,str+=","+y,str+=")"):"translate"===key?(str+="translate("+value[x],"y"in value&&(str+=","+value.y),str+=")"):console.log("Unknown transform: "+key)}str+=" "}return str},igv.SVG.prototype.clearRect=function(x,y,w,h){},igv.SVG.prototype.strokeLine=function(x1,y1,x2,y2,properties,transforms){var str="";str+='<line x1="'+x1+'" y1="'+y1+'" x2="'+x2+'" y2="'+y2+'"',properties&&(str+=' style="'+this.setProperties(properties)+'"'),transforms&&(str+=' transform="'+this.setTransforms(transforms,x1,y1)+'"'),str+="/>",this.contents.push(str)},igv.SVG.prototype.fillRect=function(x,y,w,h,properties,transforms){var str="";str+='<rect x="'+x+'" y="'+y,str+='" width="'+w+'" height="'+h+'"',properties&&(str+=' style="'+this.setProperties(properties)+'"'),transforms&&(str+=' transform="'+this.setTransforms(transforms,x,y)+'"'),str+="/>",this.contents.push(str)},igv.SVG.prototype.fillRectWithCenter=function(centerX,centerY,width,height,properties,transforms){var str="";str+='<rect x="'+(centerX-width/2)+'" y="'+(centerY-height/2),str+='" width="'+width+'" height="'+height+'"',properties&&(str+=' style="'+this.setProperties(properties)+'"'),transforms&&(str+=' transform="'+this.setTransforms(transforms,centerX,centerY)+'"'),str+="/>",this.contents.push(str)},igv.SVG.prototype.fillPolygon=function(x,y,properties,transforms){var str="";str+='<polygon points="';for(var index=0;index<x.length;index++)str+=" "+x[index]+","+y[index];str+='"',properties&&(str+=' style="'+this.setProperties(properties)+'"'),transforms&&(str+=' transform="'+this.setTransforms(transforms,x,y)+'"'),str+="/>",this.contents.push(str)},igv.SVG.prototype.fillText=function(text,x,y,properties,transforms){var str="";str+='<text x="'+x+'" y="'+y+'"',properties&&(str+=' style="'+this.setProperties(properties)+'"'),transforms&&(str+=' transform="'+this.setTransforms(transforms,x,y)+'"'),str+=">",str+=text,str+="</text>",this.contents.push(str)},igv.SVG.prototype.strokeText=function(text,x,y,properties,transforms){var str="";str+='<text x="'+x+'" y="'+y+'"',properties&&(str+=' style="'+this.setProperties(properties)+'"'),transforms&&(str+=' transform="'+this.setTransforms(transforms,x,y)+'"'),str+=">",str+=text,str+="</text>",this.contents.push(str)},igv.SVG.prototype.strokeCircle=function(x,y,radius,properties,transforms){var str="";str+='<circle cx="'+x+'" cy="'+y+'" r="'+radius+'" stroke="black" fill-opacity="0.0"/>',this.contents.push(str)},igv.SVG.prototype.string=function(){var string="";string+='<svg width="100%" height="100%" version="1.1" xmlns="http://www.w3.org/2000/svg">';for(var index=0;index<this.contents.length;index++)string+="\n"+this.contents[index];return string+="</svg>"},igv.SVG.prototype.innerString=function(){for(var string="",index=0;index<this.contents.length;index++)string+="\n"+this.contents[index];return string},igv}(igv||{}),igv=function(igv){function createFixedStep(binaryParser,nTracks){var data,dtrack,nPositions=binaryParser.getInt(),start=binaryParser.getInt(),span=binaryParser.getFloat(),np=nPositions,nt=nTracks;for(data=[];nt-- >0;){for(np=nPositions,dtrack=[];np-- >0;)dtrack.push(binaryParser.getFloat());data.push(dtrack)}return{type:"fixedStep",start:start,span:span,data:data,nTracks:nTracks,nPositions:nPositions}}function createVariableStep(binaryParser,nTracks){for(var data,dtrack,tileStart=binaryParser.getInt(),span=binaryParser.getFloat(),nPositions=binaryParser.getInt(),np=nPositions,nt=nTracks,start=[];np-- >0;)start.push(binaryParser.getInt());binaryParser.getInt();for(data=[];nt-- >0;){for(np=nPositions,dtrack=[];np-- >0;)dtrack.push(binaryParser.getFloat());data.push(dtrack)}return{type:"variableStep",tileStart:tileStart,span:span,start:start,data:data,nTracks:nTracks,nPositions:nPositions}}function createBed(binaryParser,nTracks,type){var nPositions,start,end,data,name,n,nt;for(nPositions=binaryParser.getInt(),n=nPositions,start=[];n-- >0;)start.push(binaryParser.getInt());for(n=nPositions,end=[];n-- >0;)end.push(binaryParser.getInt());binaryParser.getInt();for(data=[],nt=nTracks;nt-- >0;){for(np=nPositions,dtrack=[];np-- >0;)dtrack.push(binaryParser.getFloat());data.push(dtrack)}if("bedWithName"===type)for(n=nPositions,name=[];n-- >0;)name.push(binaryParser.getString());return{type:type,start:start,end:end,data:data,name:name,nTracks:nTracks,nPositions:nPositions}}var GZIP_FLAG=1;return igv.TDFReader=function(config){this.config=config,this.path=config.url,this.groupCache={}},igv.TDFReader.prototype.readHeader=function(){var self=this;return void 0!==this.magic?Promise.resolve(this):igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:0,size:64e3}})).then(function(data){var binaryParser=new igv.BinaryParser(new DataView(data));self.magic=binaryParser.getInt(),self.version=binaryParser.getInt(),self.indexPos=binaryParser.getLong(),self.indexSize=binaryParser.getInt();binaryParser.getInt();if(self.version>=2){var nWindowFunctions=binaryParser.getInt();for(self.windowFunctions=[];nWindowFunctions-- >0;)self.windowFunctions.push(binaryParser.getString())}self.trackType=binaryParser.getString(),self.trackLine=binaryParser.getString();var nTracks=binaryParser.getInt();for(self.trackNames=[];nTracks-- >0;)self.trackNames.push(binaryParser.getString());return self.genomeID=binaryParser.getString(),self.flags=binaryParser.getInt(),self.compressed=0!=(self.flags&GZIP_FLAG),igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:self.indexPos,size:self.indexSize}}))}).then(function(data){binaryParser=new igv.BinaryParser(new DataView(data)),self.datasetIndex={};for(var nEntries=binaryParser.getInt();nEntries-- >0;){var name=binaryParser.getString(),pos=binaryParser.getLong(),size=binaryParser.getInt();self.datasetIndex[name]={position:pos,size:size}}for(self.groupIndex={},nEntries=binaryParser.getInt();nEntries-- >0;)name=binaryParser.getString(),pos=binaryParser.getLong(),size=binaryParser.getInt(),self.groupIndex[name]={position:pos,size:size};return self})},igv.TDFReader.prototype.readDataset=function(chr,windowFunction,zoom){var dsName,self=this;return self.readHeader().then(function(ignore){var indexEntry,wf=self.version<2?"":"/"+windowFunction,zoomString="all"===chr.toLowerCase()||void 0===zoom?"0":zoom.toString();return dsName="raw"===windowFunction?"/"+chr+"/raw":"/"+chr+"/z"+zoomString+wf,indexEntry=self.datasetIndex[dsName],void 0===indexEntry?void 0:igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:indexEntry.position,size:indexEntry.size}}))}).then(function(data){if(data){for(var binaryParser=new igv.BinaryParser(new DataView(data)),nAttributes=binaryParser.getInt(),attributes={};nAttributes-- >0;)attributes[binaryParser.getString()]=binaryParser.getString();for(var dataType=binaryParser.getString(),tileWidth=binaryParser.getFloat(),nTiles=binaryParser.getInt(),tiles=[];nTiles-- >0;)tiles.push({position:binaryParser.getLong(),size:binaryParser.getInt()});var dataset={name:dsName,attributes:attributes,dataType:dataType,tileWidth:tileWidth,tiles:tiles};return dataset}})},igv.TDFReader.prototype.readRootGroup=function(){var self=this,rootGroup=this.groupCache["/"];return rootGroup?Promise.resolve(rootGroup):self.readGroup("/").then(function(group){var genome=igv.browser.genome,names=group.chromosomes,maxZoomString=group.maxZoom;return maxZoomString&&(self.maxZoom=Number(maxZoomString)),self.chrAliasTable={},names&&names.split(",").forEach(function(chr){var canonicalName=genome.getChromosomeName(chr);self.chrAliasTable[canonicalName]=chr}),group})},igv.TDFReader.prototype.readGroup=function(name){var group,self=this,group=self.groupCache[name];return group?Promise.resolve(group):self.readHeader().then(function(reader){var indexEntry=self.groupIndex[name];return void 0===indexEntry?void 0:igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:indexEntry.position,size:indexEntry.size}}))}).then(function(data){if(data){for(var binaryParser=new igv.BinaryParser(new DataView(data)),nAttributes=binaryParser.getInt(),group={name:name};nAttributes-- >0;)group[binaryParser.getString()]=binaryParser.getString();return self.groupCache[name]=group,group}})},igv.TDFReader.prototype.readTile=function(indexEntry,nTracks){var self=this;return igv.xhr.loadArrayBuffer(self.path,igv.buildOptions(self.config,{range:{start:indexEntry.position,size:indexEntry.size}})).then(function(data){if(self.compressed){var inflate=new Zlib.Inflate(new Uint8Array(data)),plain=inflate.decompress();data=plain.buffer}var binaryParser=new igv.BinaryParser(new DataView(data)),type=binaryParser.getString();switch(type){case"fixedStep":return createFixedStep(binaryParser,nTracks);case"variableStep":return createVariableStep(binaryParser,nTracks);case"bed":case"bedWithName":return createBed(binaryParser,nTracks,type);default:throw"Unknown tile type: "+type}})},igv}(igv||{}),igv=function(igv){function decodeBedTile(tile,chr,bpStart,bpEnd,bpPerPixel,features){var i,nPositions=tile.nPositions,starts=tile.start,ends=tile.end,data=tile.data[0];for(i=0;i<nPositions;i++){var s=starts[i],e=ends[i];if(!(e<bpStart)){if(s>bpEnd)break;features.push({chr:chr,start:s,end:e,value:data[i]})}}}function decodeVaryTile(tile,chr,bpStart,bpEnd,bpPerPixel,features){var i,nPositions=tile.nPositions,starts=tile.start,span=tile.span,data=tile.data[0];for(i=0;i<nPositions;i++){var s=starts[i],e=s+span;if(!(e<bpStart)){if(s>bpEnd)break;features.push({chr:chr,start:s,end:e,value:data[i]})}}}function decodeFixedTile(tile,chr,bpStart,bpEnd,bpPerPixel,features){var i,nPositions=tile.nPositions,s=tile.start,span=tile.span,data=tile.data[0];for(i=0;i<nPositions;i++){var e=s+span;if(!(e<bpStart)){if(s>bpEnd)break;Number.isNaN(data[i])||features.push({chr:chr,start:s,end:e,value:data[i]}),s=e}}}function zoomLevelForScale(chr,bpPerPixel){var chrSize=igv.browser.genome.getChromosome(chr).bpLength;return Math.ceil(Math.log(Math.max(0,chrSize/(700*bpPerPixel)))/log2)}igv.TDFSource=function(config){this.windowFunction=config.windowFunction||"mean",this.reader=new igv.TDFReader(config)},igv.TDFSource.prototype.getFeatures=function(chr,bpStart,bpEnd,bpPerPixel){var self=this,featureCache=self.featureCache,genomicInterval=new igv.GenomicInterval(chr,bpStart,bpEnd);return genomicInterval.bpPerPixel=bpPerPixel,featureCache&&featureCache.range.bpPerPixel===bpPerPixel&&featureCache.range.containsRange(genomicInterval)?Promise.resolve(self.featureCache.queryFeatures(chr,bpStart,bpEnd)):self.reader.readRootGroup().then(function(group){var wf,zoom=zoomLevelForScale(chr,bpPerPixel),queryChr=self.reader.chrAliasTable[chr],maxZoom=self.reader.maxZoom;return void 0===queryChr&&(queryChr=chr),void 0===maxZoom&&(maxZoom=-1),wf=zoom>maxZoom?"raw":self.windowFunction,self.reader.readDataset(queryChr,wf,zoom)}).then(function(dataset){if(null==dataset)return[];var i,tileWidth=dataset.tileWidth,startTile=Math.floor(bpStart/tileWidth),endTile=Math.floor(bpEnd/tileWidth),p=[],NTRACKS=1;for(i=startTile;i<=endTile;i++)void 0!==dataset.tiles[i]&&p.push(self.reader.readTile(dataset.tiles[i],NTRACKS));return Promise.all(p)}).then(function(tiles){var features=[];return tiles.forEach(function(tile){switch(tile.type){case"bed":decodeBedTile(tile,chr,bpStart,bpEnd,bpPerPixel,features);break;case"variableStep":decodeVaryTile(tile,chr,bpStart,bpEnd,bpPerPixel,features);break;case"fixedStep":decodeFixedTile(tile,chr,bpStart,bpEnd,bpPerPixel,features);break;default:return void reject("Unknown tile type: "+tile.type)}}),self.featureCache=new igv.FeatureCache(features,genomicInterval),features})};var log2=Math.log(2);return igv}(igv||{}),igv=function(igv){var knownFileExtensions=new Set(["narrowpeak","broadpeak","peaks","bedgraph","wig","gff3","gff","gtf","aneu","fusionjuncspan","refflat","seg","bed","vcf","bb","bigbed","bw","bigwig","bam","tdf","refgene","genepred","genepredext"]);return igv.getFormat=function(name){return void 0===igv.browser||void 0===igv.browser.formats?void 0:igv.browser.formats[name]},igv.createTrack=function(conf){var type=void 0===conf.type?"unknown_type":conf.type.toLowerCase();switch(type){case"gwas":return new igv.GWASTrack(conf);case"annotation":case"genes":case"fusionjuncspan":case"snp":return new igv.FeatureTrack(conf);case"variant":return new igv.VariantTrack(conf);case"alignment":return new igv.BAMTrack(conf);case"data":case"wig":return new igv.WIGTrack(conf);case"sequence":return new igv.SequenceTrack(conf);case"eqtl":return new igv.EqtlTrack(conf);case"seg":return new igv.SegTrack(conf);case"aneu":return new igv.AneuTrack(conf);case"merged":return new igv.MergedTrack(conf);default:return}},igv.inferTrackTypes=function(config){function translateDeprecatedTypes(config){config.featureType&&(config.type=config.type||config.featureType,config.featureType=void 0),"bed"===config.type?(config.type="annotation",config.format=config.format||"bed"):"bam"===config.type?(config.type="alignment",config.format="bam"):"vcf"===config.type?(config.type="variant",config.format="vcf"):"t2d"===config.type?config.type="gwas":"FusionJuncSpan"===config.type&&(config.format="fusionjuncspan")}function inferFileFormat(config){var path,fn,idx,ext;if(config.format)return void(config.format=config.format.toLowerCase());switch(path=igv.isFilePath(config.url)?config.url.name:config.url,fn=path.toLowerCase(),idx=fn.indexOf("?"),idx>0&&(fn=fn.substr(0,idx)),fn.endsWith(".gz")?fn=fn.substr(0,fn.length-3):(fn.endsWith(".txt")||fn.endsWith(".tab"))&&(fn=fn.substr(0,fn.length-4)),idx=fn.lastIndexOf("."),ext=idx<0?fn:fn.substr(idx+1),ext.toLowerCase()){case"bw":config.format="bigwig";break;case"bb":config.format="bigbed";default:knownFileExtensions.has(ext)&&(config.format=ext)}}function inferTrackType(config){if(!config.type&&void 0!==config.format)switch(config.format.toLowerCase()){case"bw":case"bigwig":case"wig":case"bedgraph":case"tdf":config.type="wig";break;case"vcf":config.type="variant";break;case"seg":config.type="seg";break;case"bam":config.type="alignment";break;default:config.type="annotation"}}translateDeprecatedTypes(config),void 0===config.sourceType&&config.url&&(config.sourceType="file"),"file"===config.sourceType&&void 0===config.format&&inferFileFormat(config),void 0===config.type&&inferTrackType(config)},igv.configTrack=function(track,config){track.config=config,track.url=config.url,config.name=config.name||config.label,config.name?track.name=config.name:igv.isFilePath(config.url)?track.name=config.url.name:track.name=config.url,track.id=config.id||track.name,track.order=config.order,track.color=config.color||igv.browser.constants.defaultColor||"rgb(0,0,150)",track.removable=void 0===config.removable||config.removable,track.height=config.height||100,void 0===config.autoHeight&&(config.autoHeight=config.autoheight),track.autoHeight=void 0===config.autoHeight?void 0===config.height:config.autoHeight,track.minHeight=config.minHeight||Math.min(50,track.height),track.maxHeight=config.maxHeight||Math.max(500,track.height),config.visibilityWindow&&(track.visibilityWindow=config.visibilityWindow),void 0===track.type&&(track.type=config.type)},igv.setTrackLabel=function(track,label){var vp=_.first(track.trackView.viewports);track.name=label,vp.$viewport.find(".igv-track-label").html(track.name),track.trackView&&track.trackView.repaint()},igv.inferIndexPath=function(url,extension){var idx;if(url instanceof File)throw new Error("Cannot infer an index path for a local File.  Please select explicitly");return url.includes("?")?(idx=url.indexOf("?"),url.substring(0,idx)+"."+extension+url.substring(idx)):url+"."+extension},igv.paintAxis=function(ctx,pixelWidth,pixelHeight){function prettyPrint(number){return 0===number?"0":Math.abs(number)>=10?number.toFixed():Math.abs(number)>=1?number.toFixed(1):number.toFixed(2)}var x1,x2,y1,y2,a,b,reference,shim,font={font:"normal 10px Arial",textAlign:"right",strokeStyle:"black"};void 0!==this.dataRange&&void 0!==this.dataRange.max&&void 0!==this.dataRange.min&&(igv.graphics.fillRect(ctx,0,0,pixelWidth,pixelHeight,{fillStyle:"rgb(255, 255, 255)"}),reference=.95*pixelWidth,x1=reference-8,x2=reference,shim=.01,y1=y2=shim*pixelHeight,a={x:x2,y:y1},igv.graphics.strokeLine(ctx,x1,y1,x2,y2,font),igv.graphics.fillText(ctx,prettyPrint(this.dataRange.max),x1+4,y1+12,font),y1=y2=(1-shim)*pixelHeight,b={x:x2,y:y1},igv.graphics.strokeLine(ctx,x1,y1,x2,y2,font),igv.graphics.fillText(ctx,prettyPrint(this.dataRange.min),x1+4,y1-4,font),igv.graphics.strokeLine(ctx,a.x,a.y,b.x,b.y,font))},igv.trackPopupMenuItemList=function(popover,viewport,genomicLocation,xOffset,yOffset){var config,menuItems;return config={popover:popover,viewport:viewport,genomicLocation:genomicLocation,x:xOffset,y:yOffset},menuItems=[],viewport.trackView.track.popupMenuItemList&&(menuItems=igv.trackMenuItemListHelper(viewport.trackView.track.popupMenuItemList(config))),menuItems},igv.trackMenuItemList=function(popover,trackView){var all,menuItems=[];return"sequence"!=trackView.track.config.type&&(menuItems.push(igv.trackMenuItem(popover,trackView,"Set track name",function(){return"Track Name"},trackView.track.name,function(){function parseAlphanumeric(value){var alphanumeric_re=/(?=.*[a-zA-Z].*)([a-zA-Z0-9 ]+)/,alphanumeric=alphanumeric_re.exec(value);return null!==alphanumeric?alphanumeric[0]:"untitled"}var alphanumeric=parseAlphanumeric(igv.dialog.$dialogInput.val());void 0!==alphanumeric&&(igv.setTrackLabel(trackView.track,alphanumeric),trackView.update())},void 0)),menuItems.push(igv.trackMenuItem(popover,trackView,"Set track height",function(){return"Track Height"},trackView.trackDiv.clientHeight,function(){var number=parseFloat(igv.dialog.$dialogInput.val(),10);void 0!==number&&(void 0!==trackView.track.minHeight&&trackView.track.minHeight>number&&(trackView.track.minHeight=number),void 0!==trackView.track.maxHeight&&trackView.track.maxHeight<number&&(trackView.track.minHeight=number),trackView.setTrackHeight(number),trackView.track.autoHeight=!1)},void 0))),igv.doProvideColoSwatchWidget(trackView.track)&&menuItems.push(igv.colorPickerMenuItem(popover,trackView)),all=[],trackView.track.menuItemList&&(all=menuItems.concat(igv.trackMenuItemListHelper(trackView.track.menuItemList(popover)))),trackView.track.removable!==!1&&all.push(igv.trackMenuItem(popover,trackView,"Remove track",function(){var label="Remove "+trackView.track.name;return'<div class="igv-dialog-label-centered">'+label+"</div>"},void 0,function(){popover.hide(),trackView.browser.removeTrack(trackView.track)},!0)),all},igv.doProvideColoSwatchWidget=function(track){return track instanceof igv.BAMTrack||track instanceof igv.FeatureTrack||track instanceof igv.VariantTrack||track instanceof igv.WIGTrack},igv.trackMenuItemListHelper=function(itemList){var list=[];return _.size(itemList)>0&&(list=_.map(itemList,function(item,i){var $e;return item.name?($e=$("<div>"),$e.text(item.name)):$e=item.object,0===i&&$e.addClass("igv-track-menu-border-top"),item.click&&$e.click(item.click),{object:$e,init:item.init||void 0}})),list},igv.trackMenuItem=function(popover,trackView,menuItemLabel,dialogLabelHandler,dialogInputValue,dialogClickHandler,doAddTopBorder){var $e,clickHandler;return $e=$("<div>"),!0===doAddTopBorder&&$e.addClass("igv-track-menu-border-top"),$e.text(menuItemLabel),clickHandler=function(){var $element=$(trackView.trackDiv);igv.dialog.configure(dialogLabelHandler,dialogInputValue,dialogClickHandler,void 0,void 0),igv.dialog.show($element),popover.hide()},$e.click(clickHandler),{object:$e,init:void 0}},igv.dataRangeMenuItem=function(popover,trackView){var $e,clickHandler;return $e=$("<div>"),$e.text("Set data range"),clickHandler=function(){igv.dataRangeDialog.configureWithTrackView(trackView),igv.dataRangeDialog.show(),popover.hide()},$e.click(clickHandler),{object:$e,init:void 0}},igv.colorPickerMenuItem=function(popover,trackView){var $e;return $e=$("<div>"),$e.text("Set track color"),$e.click(function(){trackView.$colorpicker_container.toggle(),popover.hide()}),{object:$e}},igv}(igv||{}),igv=function(igv){function indexFilesMissingAssociatedDataFilesAndWarningBlurb(dataFiles,indexFiles){var keysMissing,filenames,blurb;return keysMissing=[],_.each(indexFiles,function(indexFile,key){void 0===dataFiles[key]&&keysMissing.push(key)}),blurb="",_.size(keysMissing)>0?(filenames=_.map(keysMissing,function(key){return indexFiles[key].name}),blurb=filenames.join(" and "),blurb+=" require an associated data file.",{missing:keysMissing,blurb:blurb}):void 0}function dataFilesMissingAssociatedIndexFilesAndWarningBlurb(dataFiles,indexFiles){var keysMissing,filenames,blurb;return keysMissing=[],_.each(dataFiles,function(dataFile,key){var indexFileIsPresent=void 0!==indexFiles;!1===igv.TrackFileLoad.keyToIndexExtension[dataFile.indexExtensionLookup].optional&&indexFileIsPresent&&void 0===indexFiles[key]&&keysMissing.push(key)}),blurb="",_.size(keysMissing)>0?(filenames=_.map(keysMissing,function(key){return dataFiles[key].file.name}),blurb=filenames.join(" and "),blurb+=" require an associated index file.",{missing:keysMissing,blurb:blurb}):void 0}function extractIndexFiles(files){var result,indexFiles;return result=_.filter(files,function(f){return igv.TrackFileLoad.isIndexFile(f)}),_.size(result)>0?(indexFiles={},_.each(result,function(f){var parts,key;parts=f.name.slice(0,-4).split("."),_.size(parts)>1?(parts.pop(),key=parts.join(".")):key=parts,indexFiles[key]=f}),indexFiles):void 0}function extractDataFiles(files){var result,dataFiles;return result=_.filter(files,function(f){return!igv.TrackFileLoad.isIndexFile(f)}),_.size(result)>0?(dataFiles={},_.each(result,function(f){var parts,key,extension,lookupKey;parts=f.name.split("."),"gz"===_.last(parts)&&parts.pop(),parts.pop(),key=parts.join("."),extension=igv.getExtension({url:f}),lookupKey=_.contains(_.keys(igv.TrackFileLoad.keyToIndexExtension),extension)?extension:"any",dataFiles[key]={file:f,extension:extension,
+indexExtensionLookup:lookupKey}}),dataFiles):void 0}function drag_drop_surface(trackFileLoader,$parent){function blurb($parent,phrase,input_id,label_id){var $label,$choose_file;$label=$("<label>"),$parent.append($label),$label.attr("for",input_id),$label.attr("id",label_id),$choose_file=$("<strong>"),$choose_file.text(phrase),$label.append($choose_file),$e=$('<span class="igv-drag-drop-surface-blurb">'),$e.text(" or drop file(s) here"),$label.append($e)}var $e,$ok,$cancel;trackFileLoader.$drag_drop_surface=$('<div class="igv-drag-drop-surface">'),$parent.append(trackFileLoader.$drag_drop_surface),trackFileLoader.$drag_drop_surface.on("drag dragstart dragend dragover dragenter dragleave drop",function(e){e.preventDefault(),e.stopPropagation()}).on("dragover dragenter",function(){$(".igv-drag-drop-container").addClass("is-dragover")}).on("dragleave dragend drop",function(){$(".igv-drag-drop-container").removeClass("is-dragover")}).on("drop",function(e){trackFileLoader.loadLocalFiles(e.originalEvent.dataTransfer.files)}),trackFileLoader.$file_input_container=$('<div class="igv-drag-drop-file-input">'),trackFileLoader.$drag_drop_surface.append(trackFileLoader.$file_input_container),trackFileLoader.$file_input=$('<input id="igv-track-file-input" class="igv-track-file-input-css" type="file" name="files[]" data-multiple-caption="{count} files selected" multiple="">'),trackFileLoader.$file_input_container.append(trackFileLoader.$file_input),trackFileLoader.$file_input.on("change",function(e){trackFileLoader.loadLocalFiles(e.target.files)}),blurb(trackFileLoader.$file_input_container,"Choose file(s)","igv-track-file-input","load-file-blurb"),trackFileLoader.$file_input_blurb=trackFileLoader.$file_input_container.find("#load-file-blurb"),$ok=$('<div id="file_input_ok" class="igv-drag-drop-ok">'),trackFileLoader.$drag_drop_surface.append($ok),$ok.text("ok"),$ok.hide(),$ok.on("click",function(e){var extension;extension=igv.getExtension({url:trackFileLoader.file}),void 0===trackFileLoader.indexFile&&!1===igv.TrackFileLoad.keyToIndexExtension[extension].optional?trackFileLoader.warnWithMessage("ERROR. "+extension+" files require an index file."):void 0===trackFileLoader.indexFile&&!0===igv.TrackFileLoad.keyToIndexExtension[extension].optional?(igv.browser.loadTrack({url:trackFileLoader.file,indexURL:void 0,indexed:!1}),doDismiss(trackFileLoader)):(igv.browser.loadTrack({url:trackFileLoader.file,indexURL:trackFileLoader.indexFile}),doDismiss(trackFileLoader))}),$cancel=$('<div id="file_input_cancel" class="igv-drag-drop-cancel">'),trackFileLoader.$drag_drop_surface.append($cancel),$cancel.text("cancel"),$cancel.hide(),$cancel.on("click",function(e){doDismiss(trackFileLoader)}),url_input_container(trackFileLoader,trackFileLoader.$drag_drop_surface)}function createWarning(){var $warning,$e,$fa;return $warning=$('<div class="igv-drag-drop-warning">'),$e=$('<div id="warning-message">'),$warning.append($e),$e=$('<div id="warning-dismiss">'),$warning.append($e),$fa=$('<i class="fa fa-times-circle">'),$e.append($fa),$fa.on("click",function(){$warning.hide()}),$warning.hide(),$warning}function url_input_container(trackFileLoader,$parent){var $ok,$cancel;trackFileLoader.$url_input_container=$('<div class="igv-drag-and-drop-url-input-container">'),$parent.append(trackFileLoader.$url_input_container),trackFileLoader.$or=$("<div>"),trackFileLoader.$url_input_container.append(trackFileLoader.$or),trackFileLoader.$or.text("or"),trackFileLoader.$url_input=$('<input class="igv-drag-and-drop-url-input" placeholder="enter data file URL">'),trackFileLoader.$url_input_container.append(trackFileLoader.$url_input),trackFileLoader.$url_input.on("change",function(e){var _url;_url=$(this).val(),igv.TrackFileLoad.isIndexFile(_url)?(trackFileLoader.warnWithMessage("Error. Must enter data URL."),$(this).val(void 0)):!1===igv.TrackFileLoad.isIndexable(_url)?(igv.browser.loadTrack({url:_url,indexed:!1}),$(this).val(void 0),doDismiss(trackFileLoader)):(trackFileLoader.$file_input_container.hide(),trackFileLoader.$or.hide(),trackFileLoader.$url_input_feedback.text(_url.split("/").pop()),trackFileLoader.$url_input_feedback.show(),$(this).hide(),$ok.show(),$cancel.show())}),trackFileLoader.$url_input_feedback=$('<div class="igv-drag-and-drop-url-input-feedback" >'),trackFileLoader.$url_input_container.append(trackFileLoader.$url_input_feedback),trackFileLoader.$url_input_feedback.hide(),trackFileLoader.$index_url_input=$('<input class="igv-drag-and-drop-url-input" placeholder="enter associated index file URL">'),trackFileLoader.$url_input_container.append(trackFileLoader.$index_url_input),trackFileLoader.$index_url_input.on("change",function(e){var _url;_url=$(this).val(),!1===igv.TrackFileLoad.isIndexFile(_url)?(trackFileLoader.warnWithMessage("ERROR. Must enter index URL."),$(this).val(void 0)):(trackFileLoader.$index_url_input_feedback.text(_url.split("/").pop()),trackFileLoader.$index_url_input_feedback.show(),$(this).hide())}),trackFileLoader.$index_url_input_feedback=$('<div class="igv-drag-and-drop-url-input-feedback" >'),trackFileLoader.$url_input_container.append(trackFileLoader.$index_url_input_feedback),trackFileLoader.$index_url_input_feedback.hide(),$ok=$('<div  id="url_input_ok" class="igv-drag-drop-ok">'),trackFileLoader.$url_input_container.append($ok),$ok.text("ok"),$ok.hide(),$ok.on("click",function(e){var _url,_indexURL,extension,key;_url=""===trackFileLoader.$url_input.val()?void 0:trackFileLoader.$url_input.val(),_indexURL=""===trackFileLoader.$index_url_input.val()?void 0:trackFileLoader.$index_url_input.val(),extension=igv.getExtension({url:_url}),key=igv.TrackFileLoad.keyToIndexExtension[extension]?extension:"any",void 0===_indexURL&&!1===igv.TrackFileLoad.keyToIndexExtension[key].optional?trackFileLoader.warnWithMessage("ERROR. A "+extension+" data URL requires an associated index URL."):void 0===_url?trackFileLoader.warnWithMessage("ERROR. A data URL must be entered."):void 0===_indexURL&&!0===igv.TrackFileLoad.keyToIndexExtension[key].optional?(igv.browser.loadTrack({url:_url,indexURL:void 0,indexed:!1}),doDismiss(trackFileLoader)):(igv.browser.loadTrack({url:_url,indexURL:_indexURL}),doDismiss(trackFileLoader))}),$cancel=$('<div  id="url_input_cancel" class="igv-drag-drop-cancel">'),trackFileLoader.$url_input_container.append($cancel),$cancel.text("cancel"),$cancel.hide(),$cancel.on("click",function(e){doDismiss(trackFileLoader)})}function doDismiss(trackFileLoader){$("#file_input_ok").hide(),$("#file_input_cancel").hide(),trackFileLoader.$file_input.show(),trackFileLoader.$file_input_blurb.show(),trackFileLoader.$file_input_container.show(),trackFileLoader.file=void 0,trackFileLoader.indexFile=void 0,trackFileLoader.$or.show(),trackFileLoader.$url_input_container.show(),$("#url_input_ok").hide(),$("#url_input_cancel").hide(),trackFileLoader.$url_input.show(),trackFileLoader.$url_input.val(void 0),trackFileLoader.$url_input_feedback.hide(),trackFileLoader.$index_url_input.show(),trackFileLoader.$index_url_input.val(void 0),trackFileLoader.$index_url_input_feedback.hide(),trackFileLoader.$warning.hide(),trackFileLoader.$container.hide()}function doPresent(trackFileLoader){trackFileLoader.$container.show()}return igv.TrackFileLoad=function(){function dismissButton(){function fa_mousein(){$fa.removeClass("fa-times"),$fa.addClass("fa-times-circle")}function fa_mouseout(){$fa.removeClass("fa-times-circle"),$fa.addClass("fa-times")}var $container,$fa;return $fa=$('<i class="fa">'),$fa.hover(fa_mousein,fa_mouseout),$fa.on("click",function(){fa_mouseout(),doDismiss(self)}),$container=$('<div class="igv-drag-and-drop-close-container">'),$container.append($fa),fa_mouseout(),$container}var self=this;this.$container=$('<div class="igv-drag-drop-container">'),drag_drop_surface(this,this.$container),this.$warning=createWarning(),this.$container.append(this.$warning),this.$container.append($('<div class="igv-drag-drop-shim">')),this.$container.append(dismissButton()),this.$presentationButton=$('<div class="igv-drag-and-drop-presentation-button">'),this.$presentationButton.text("Load Track"),this.$presentationButton.on("click",function(){self.$container.is(":visible")?doDismiss(self):doPresent(self)})},igv.TrackFileLoad.prototype.warnWithMessage=function(message){this.$warning.find("#warning-message").text(message),this.$warning.show()},igv.TrackFileLoad.keyToIndexExtension={bam:{extension:"bai",optional:!1},any:{extension:"idx",optional:!0},gz:{extension:"tbi",optional:!0}},igv.TrackFileLoad.indexExtensionToKey=_.invert(_.mapObject(igv.TrackFileLoad.keyToIndexExtension,function(val){return val.extension})),igv.TrackFileLoad.isIndexFile=function(fileOrURL){var extension;return extension=igv.getExtension({url:fileOrURL}),_.contains(_.keys(igv.TrackFileLoad.indexExtensionToKey),extension)},igv.TrackFileLoad.isIndexable=function(fileOrURL){var extension;return!igv.TrackFileLoad.isIndexFile(fileOrURL)&&(extension=igv.getExtension({url:fileOrURL}),"wig"!==extension&&"seg"!==extension)},igv.TrackFileLoad.prototype.loadLocalFiles=function(files){var dataFiles,indexFiles,configurations,ifMissingDf,dfMissingIf,dataF,indexF,keysMissing,keysPresent,filenames,str,blurb_0,blurb_1;dataFiles=extractDataFiles(files),indexFiles=extractIndexFiles(files),void 0===dataFiles&&void 0===indexFiles?this.warnWithMessage("ERROR: No data or index file(s) provided."):void 0===indexFiles?(keysMissing=[],_.each(dataFiles,function(dataFile,key){!1===igv.TrackFileLoad.keyToIndexExtension[dataFile.indexExtensionLookup].optional&&keysMissing.push(key)}),keysPresent=_.difference(_.keys(dataFiles),keysMissing),dataF=_.size(keysPresent)>0?_.pick(dataFiles,keysPresent):void 0,dataF&&(configurations=_.map(_.pluck(dataF,"file"),function(f){return{url:f,indexed:!1}}),igv.browser.loadTracksWithConfigList(configurations)),_.size(keysMissing)>0?(filenames=_.map(keysMissing,function(key){return dataFiles[key].file.name}),str=filenames.join(" and "),this.warnWithMessage("ERROR: "+str+" require an associated index file.")):doDismiss(this)):void 0===dataFiles?(blurb_0=_.map(indexFiles,function(m){return m.name}).join(" and "),blurb_0+=" require an associated data file.",this.warnWithMessage("ERROR: "+blurb_0)):(dfMissingIf=dataFilesMissingAssociatedIndexFilesAndWarningBlurb(dataFiles,indexFiles),ifMissingDf=indexFilesMissingAssociatedDataFilesAndWarningBlurb(dataFiles,indexFiles),str=void 0,blurb_0=dfMissingIf?dfMissingIf.blurb:void 0,blurb_1=ifMissingDf?ifMissingDf.blurb:void 0,blurb_0&&blurb_1?str=blurb_0+" "+blurb_1:blurb_0?str=blurb_0:blurb_1&&(str=blurb_1),keysPresent=dfMissingIf?_.difference(_.keys(dataFiles),dfMissingIf.missing):_.keys(dataFiles),dataF=_.size(keysPresent)>0?_.pick(dataFiles,keysPresent):void 0,keysPresent=ifMissingDf?_.difference(_.keys(indexFiles),ifMissingDf.missing):_.keys(indexFiles),indexF=_.size(keysPresent)>0?_.pick(indexFiles,keysPresent):void 0,dataF&&(configurations=_.map(_.keys(dataF),function(key){return indexF&&indexF[key]?{url:dataF[key].file,indexURL:indexF[key]}:{url:dataF[key].file,indexed:!1}}),igv.browser.loadTracksWithConfigList(configurations)),str?this.warnWithMessage("ERROR: "+str):doDismiss(this))},igv}(igv||{}),igv=function(igv){function maxContentHeightWithViewports(viewports){var height=0;return _.each(viewports,function(viewport){var hgt=$(viewport.contentDiv).height();height=Math.max(hgt,height)}),height}function setTrackHeight_(newHeight,update){var trackHeightStr;this.track.minHeight&&(newHeight=Math.max(this.track.minHeight,newHeight)),this.track.maxHeight&&(newHeight=Math.min(this.track.maxHeight,newHeight)),trackHeightStr=newHeight+"px",this.track.height=newHeight,$(this.trackDiv).height(newHeight),this.track.paintAxis&&(this.controlCanvas.style.height=trackHeightStr,this.controlCanvas.setAttribute("height",$(this.trackDiv).height())),void 0!==update&&update!==!0||this.update()}return igv.TrackView=function(browser,$container,track){var element,$track,config,self=this;this.browser=browser,$track=$('<div class="igv-track-div">'),this.trackDiv=$track.get(0),$container.append($track),this.track=track,track.trackView=this,this.track instanceof igv.RulerTrack&&(this.trackDiv.dataset.rulerTrack="rulerTrack"),track.height&&(this.trackDiv.style.height=track.height+"px"),this.appendLeftHandGutterDivToTrackDiv($(this.trackDiv)),this.$viewportContainer=$('<div class="igv-viewport-container igv-viewport-container-shim">'),$(this.trackDiv).append(this.$viewportContainer),this.viewports=[],_.each(browser.genomicStateList,function(genomicState,i){self.viewports.push(new igv.Viewport(self,self.$viewportContainer,i)),self.track instanceof igv.RulerTrack&&self.track.createRulerSweeper(self.viewports[i],self.viewports[i].$viewport,$(self.viewports[i].contentDiv),genomicState)}),this.configureViewportContainer(this.$viewportContainer,this.viewports),element=this.createRightHandGutter(),element&&$(this.trackDiv).append(element),this.attachDragWidget(),igv.doProvideColoSwatchWidget(this.track)&&(config={width:698,classes:["igv-position-absolute"]},this.$colorpicker_container=igv.genericContainer($track,config,function(){self.$colorpicker_container.toggle()}),igv.createColorSwatchSelector(this.$colorpicker_container,function(rgb){self.setColor(rgb)}),this.$colorpicker_container.draggable({handle:this.$colorpicker_container.find("div:first-child").get(0)}),this.$colorpicker_container.hide())},igv.TrackView.prototype.configureViewportContainer=function($viewportContainer,viewports){return"hidden"===$viewportContainer.css("overflow-y")&&(this.scrollbar=new igv.TrackScrollbar($viewportContainer,viewports),$viewportContainer.append(this.scrollbar.$outerScroll)),$viewportContainer},igv.TrackScrollbar=function($viewportContainer,viewports){function mouseMove(event){event.preventDefault(),moveScrollerTo(event.pageY-offY),event.stopPropagation()}function mouseUp(event){$(window).off("mousemove .igv",null,mouseMove),$(window).off("mouseup .igv",null,mouseUp)}function moveScrollerTo(y){var newTop,contentTop,contentDivHeight,outerScrollHeight,innerScrollHeight;outerScrollHeight=self.$outerScroll.height(),innerScrollHeight=self.$innerScroll.height(),newTop=Math.min(Math.max(0,y),outerScrollHeight-innerScrollHeight),contentDivHeight=maxContentHeightWithViewports(viewports),contentTop=-Math.round(newTop*(contentDivHeight/self.$viewportContainer.height())),self.$innerScroll.css("top",newTop+"px"),_.each(viewports,function(viewport){$(viewport.contentDiv).css("top",contentTop+"px")})}var offY,self=this;contentDivHeight=maxContentHeightWithViewports(viewports),this.$outerScroll=$('<div class="igv-scrollbar-outer-div">'),this.$innerScroll=$("<div>"),this.$outerScroll.append(this.$innerScroll),this.$viewportContainer=$viewportContainer,this.viewports=viewports,this.$innerScroll.mousedown(function(event){event.preventDefault(),offY=event.pageY-$(this).position().top,$(window).on("mousemove .igv",null,null,mouseMove),$(window).on("mouseup .igv",null,null,mouseUp),event.stopPropagation()}),this.$innerScroll.click(function(event){event.stopPropagation()}),this.$outerScroll.click(function(event){moveScrollerTo(event.offsetY-self.$innerScroll.height()/2),event.stopPropagation()})},igv.TrackScrollbar.prototype.update=function(){var viewportContainerHeight,contentHeight,newInnerHeight;viewportContainerHeight=this.$viewportContainer.height(),contentHeight=maxContentHeightWithViewports(this.viewports),newInnerHeight=Math.round(viewportContainerHeight/contentHeight*viewportContainerHeight),contentHeight>viewportContainerHeight?(this.$outerScroll.show(),this.$innerScroll.height(newInnerHeight)):this.$outerScroll.hide()},igv.TrackView.prototype.attachDragWidget=function(){var self=this;self.$trackDragScrim=$('<div class="igv-track-drag-scrim">'),self.$viewportContainer.append(self.$trackDragScrim),self.$trackDragScrim.hide(),self.$trackManipulationHandle=$('<div class="igv-track-manipulation-handle">'),$(self.trackDiv).append(self.$trackManipulationHandle),self.$trackManipulationHandle.mousedown(function(e){e.preventDefault(),self.isMouseDown=!0,igv.browser.dragTrackView=self}),self.$trackManipulationHandle.mouseup(function(e){self.isMouseDown=void 0}),self.$trackManipulationHandle.mouseenter(function(e){self.isMouseIn=!0,igv.browser.dragTargetTrackView=self,void 0===igv.browser.dragTrackView?self.$trackDragScrim.show():self===igv.browser.dragTrackView&&self.$trackDragScrim.show(),igv.browser.dragTargetTrackView&&igv.browser.dragTrackView&&igv.browser.dragTargetTrackView!==igv.browser.dragTrackView&&(igv.browser.dragTargetTrackView.track.order<igv.browser.dragTrackView.track.order?(igv.browser.dragTrackView.track.order=igv.browser.dragTargetTrackView.track.order,igv.browser.dragTargetTrackView.track.order=1+igv.browser.dragTrackView.track.order):(igv.browser.dragTrackView.track.order=igv.browser.dragTargetTrackView.track.order,igv.browser.dragTargetTrackView.track.order=igv.browser.dragTrackView.track.order-1),igv.browser.reorderTracks())}),self.$trackManipulationHandle.mouseleave(function(e){self.isMouseIn=void 0,igv.browser.dragTargetTrackView=void 0,self!==igv.browser.dragTrackView&&self.$trackDragScrim.hide()})},igv.TrackView.prototype.appendLeftHandGutterDivToTrackDiv=function($track){var $leftHandGutter,$canvas,w,h,self=this;this.track.paintAxis&&($leftHandGutter=$('<div class="igv-left-hand-gutter">'),$track.append($leftHandGutter[0]),$canvas=$('<canvas class ="igv-track-control-canvas">'),w=$leftHandGutter.outerWidth(),h=$leftHandGutter.outerHeight(),$canvas.attr("width",w),$canvas.attr("height",h),$leftHandGutter.append($canvas[0]),this.controlCanvas=$canvas[0],this.controlCtx=this.controlCanvas.getContext("2d"),this.track.dataRange&&($leftHandGutter.click(function(e){igv.dataRangeDialog.configureWithTrackView(self),igv.dataRangeDialog.show()}),$leftHandGutter.addClass("igv-clickable")),this.leftHandGutter=$leftHandGutter[0])},igv.TrackView.prototype.createRightHandGutter=function(){var $gearButton,self=this;if(!this.track.ignoreTrackMenu)return $gearButton=$('<i class="fa fa-gear">'),$gearButton.click(function(e){igv.popover.presentTrackGearMenu(e.pageX,e.pageY,self)}),this.rightHandGutter=$('<div class="igv-right-hand-gutter">')[0],$(this.rightHandGutter).append($gearButton),this.rightHandGutter},igv.TrackView.prototype.setContentHeightForViewport=function(viewport,height){viewport.setContentHeight(height),this.scrollbar&&this.scrollbar.update()},igv.TrackView.prototype.dataRange=function(){return this.track.dataRange?this.track.dataRange:void 0},igv.TrackView.prototype.setDataRange=function(min,max,autoscale){this.track.dataRange.min=min,this.track.dataRange.max=max,this.track.autoscale=autoscale,this.update()},igv.TrackView.prototype.setColor=function(color){this.track.color=color,this.update()},igv.TrackView.prototype.setTrackHeight=function(newHeight,update){setTrackHeight_.call(this,newHeight,update||!0)},igv.TrackView.prototype.isLoading=function(){var anyViewportIsLoading;return anyViewportIsLoading=!1,_.each(this.viewports,function(v){!1===anyViewportIsLoading&&(anyViewportIsLoading=v.isLoading())}),anyViewportIsLoading},igv.TrackView.prototype.resize=function(){_.each(this.viewports,function(viewport){viewport.resize()}),this.scrollbar&&this.scrollbar.update()},igv.TrackView.prototype.update=function(){_.each(this.viewports,function(viewport){viewport.update()}),this.scrollbar&&this.scrollbar.update()},igv.TrackView.prototype.repaint=function(){_.each(this.viewports,function(viewport){viewport.repaint()})},igv}(igv||{}),igv=function(igv){return igv.AlertDialog=function($parent,id){var $header,$headerBlurb,self=this;this.$container=$("<div>",{id:id,class:"igv-grid-container-alert-dialog"}),$parent.append(this.$container),$header=$('<div class="igv-grid-header">'),$headerBlurb=$('<div class="igv-grid-header-blurb">'),$header.append($headerBlurb),igv.attachDialogCloseHandlerWithParent($header,function(){self.hide()}),this.$container.append($header),this.$container.append(this.alertTextContainer()),this.$container.append(this.rowOfOk())},igv.AlertDialog.prototype.alertTextContainer=function(){var $rowContainer;return $rowContainer=$('<div class="igv-grid-rect">'),this.$dialogLabel=$("<div>",{class:"igv-col igv-col-4-4 igv-alert-dialog-text"}),$rowContainer.append(this.$dialogLabel),$rowContainer},igv.AlertDialog.prototype.rowOfOk=function(){var $rowContainer,$col,self=this;return $rowContainer=$('<div class="igv-grid-rect">'),$col=$('<div class="igv-col igv-col-1-4">'),$rowContainer.append($col),$col=$('<div class="igv-col igv-col-2-4">'),this.$ok=$('<div class="igv-col-filler-ok-button">'),this.$ok.text("OK"),this.$ok.unbind(),this.$ok.click(function(){self.hide()}),$col.append(this.$ok),$rowContainer.append($col),$rowContainer},igv.AlertDialog.prototype.hide=function(){this.$container.hasClass("igv-grid-container-dialog")&&this.$container.offset({left:0,top:0}),this.$container.hide()},igv.AlertDialog.prototype.show=function($host){var body_scrolltop,offset,_top,_left;body_scrolltop=$("body").scrollTop(),this.$container.hasClass("igv-grid-container-dialog")&&(offset=$host.offset(),_top=offset.top+body_scrolltop,_left=$host.outerWidth()-300,this.$container.offset({left:_left,top:_top})),this.$container.show()},igv}(igv||{}),igv=function(igv){return igv.CenterGuide=function($parent,config){var self=this;this.$container=$('<div class="igv-center-guide igv-center-guide-thin">'),$parent.append(this.$container),!0===config.showCenterGuide?this.$container.show():this.$container.hide(),this.$centerGuideToggle=igv.makeToggleButton("center line","center line","showCenterGuide",function(){return self.$container},function(){self.repaint()})},igv.CenterGuide.prototype.repaint=function(){var ppb,trackXY,trackHalfWidth,width,left,ls,ws,center,rect,referenceFrame;void 0!==igv.browser.genomicStateList&&(referenceFrame=igv.browser.genomicStateList[0].referenceFrame,ppb=1/referenceFrame.bpPerPixel,ppb>1?(rect=igv.browser.syntheticViewportContainerBBox(),trackXY=rect.position,trackHalfWidth=.5*rect.width,center=trackXY.left+trackHalfWidth,width=referenceFrame.toPixels(1),left=center-.5*width,ls=Math.round(left).toString()+"px",ws=Math.round(width).toString()+"px",this.$container.css({left:ls,width:ws}),this.$container.removeClass("igv-center-guide-thin"),this.$container.addClass("igv-center-guide-wide")):(this.$container.css({left:"50%",width:"1px"}),this.$container.removeClass("igv-center-guide-wide"),this.$container.addClass("igv-center-guide-thin")))},igv.CenterGuide.prototype.resize=function(){this.repaint()},igv}(igv||{}),igv=function(igv){return igv.ChromosomeSelectWidget=function(browser,$parent){this.$container=$("<div>",{class:"igv-chromosome-select-widget-container"}),$parent.append(this.$container),this.$select=$("<select>",{name:"chromosome-select-widget"}),this.$container.append(this.$select),this.$select.on("change",function(){browser.parseSearchInput($(this).val())})},igv.ChromosomeSelectWidget.prototype.update=function(genome){var list,self=this;this.$select.empty(),list=genome.chromosomeNames.slice(),list.unshift("all"),_.each(list,function(name){var $o;$o=$("<option>",{value:name}),self.$select.append($o),$o.text(name)})},igv}(igv||{}),igv=function(igv){return igv.DataRangeDialog=function($parent){function doOKCancel(){var rowContainer,row,column,columnFiller;return row=$('<div class="igv-grid-dialog">'),column=$('<div class="igv-col igv-col-1-8">'),row.append(column),column=$('<div class="igv-col igv-col-3-8">'),self.ok=$('<div class="igv-col-filler-ok-button">'),self.ok.text("OK"),column.append(self.ok),row.append(column),column=$('<div class="igv-col igv-col-3-8">'),columnFiller=$('<div class="igv-col-filler-cancel-button">'),columnFiller.text("Cancel"),columnFiller.click(function(){self.hide()}),column.append(columnFiller),row.append(column),column=$('<div class="igv-col igv-col-1-8">'),row.append(column),rowContainer=$('<div class="igv-grid-rect">'),rowContainer.append(row),rowContainer}function doLayout(){var row,column,rowContainer=$('<div class="igv-grid-rect">');return row=$('<div class="igv-grid-dialog">'),column=$('<div class="spacer10">'),row.append(column),column=$('<div class="igv-col igv-col-3-8">'),self.minLabel=$('<div class="igv-data-range-input-label">'),self.minLabel.text("Minimum"),column.append(self.minLabel),row.append(column),column=$('<div class="igv-col igv-col-3-8">'),self.minInput=$('<input class="igv-data-range-input" type="text" value="125">'),column.append(self.minInput),row.append(column),rowContainer.append(row),row=$('<div class="igv-grid-dialog">'),column=$('<div class="igv-col igv-col-3-8">'),self.maxLabel=$('<div class="igv-data-range-input-label">'),self.maxLabel.text("Maximum"),column.append(self.maxLabel),row.append(column),column=$('<div class="igv-col igv-col-3-8">'),self.maxInput=$('<input class="igv-data-range-input" type="text" value="250">'),column.append(self.maxInput),row.append(column),rowContainer.append(row),rowContainer}var self=this;this.container=$('<div class="igv-grid-container-dialog">'),$parent.append(this.container),this.header=$('<div class="igv-grid-header">'),this.container.append(this.header),this.headerBlurb=$('<div class="igv-grid-header-blurb">'),this.header.append(this.headerBlurb),igv.attachDialogCloseHandlerWithParent(this.header,function(){self.hide()}),self.container.append(doLayout()),self.container.append(doOKCancel()),this.container.draggable({handle:this.header.get(0)})},igv.DataRangeDialog.prototype.configureWithTrackView=function(trackView){var dataRange,min,max,self=this;this.trackView=trackView,dataRange=this.trackView.dataRange(),dataRange?(min=dataRange.min,max=dataRange.max):(min=0,max=100),this.minInput.val(min),this.maxInput.val(max),this.ok.unbind(),this.ok.click(function(){min=parseFloat(self.minInput.val()),max=parseFloat(self.maxInput.val()),isNaN(min)||isNaN(max)?igv.presentAlert("Must input numeric values"):trackView.setDataRange(min,max,!1),self.hide()})},igv.DataRangeDialog.prototype.hide=function(){this.container.offset({left:0,top:0}),this.container.hide()},igv.DataRangeDialog.prototype.show=function(){var body_scrolltop=$("body").scrollTop(),track_origin=$(this.trackView.trackDiv).offset(),track_size={width:$(this.trackView.trackDiv).outerWidth(),height:$(this.trackView.trackDiv).outerHeight()};this.container.show(),this.container.offset({left:track_size.width-300,top:track_origin.top+body_scrolltop}),this.container.offset(igv.constrainBBox(this.container,$(igv.browser.trackContainerDiv)))},igv}(igv||{}),igv=function(igv){return igv.Dialog=function($parent,constructorHelper){var $header,$headerBlurb,self=this;this.$container=$('<div class="igv-grid-container-dialog">'),$parent.append(this.$container[0]),$header=$('<div class="igv-grid-header">'),$headerBlurb=$('<div class="igv-grid-header-blurb">'),$header.append($headerBlurb[0]),this.$container.append($header[0]),constructorHelper(this),this.$container.draggable({handle:$header.get(0)}),igv.attachDialogCloseHandlerWithParent($header,function(){self.hide()})},igv.Dialog.dialogConstructor=function(dialog){dialog.$container.append(dialog.rowOfLabel()[0]),dialog.$container.append(dialog.rowOfInput()[0]),dialog.$container.append(dialog.rowOfOkCancel()[0])},igv.Dialog.prototype.rowOfOk=function(){var $rowContainer,$row,$column,$columnFiller;return $row=$('<div class="igv-grid-dialog">'),$column=$('<div class="igv-col igv-col-1-4">'),$row.append($column[0]),$column=$('<div class="igv-col igv-col-2-4">'),$columnFiller=$('<div class="igv-col-filler-ok-button">'),$columnFiller.text("OK"),this.$ok=$columnFiller,$column.append($columnFiller[0]),$row.append($column[0]),$rowContainer=$('<div class="igv-grid-rect">'),$rowContainer.append($row[0]),$rowContainer},igv.Dialog.prototype.rowOfOkCancel=function(){var $rowContainer,$row,$column,$columnFiller,self=this;return $row=$('<div class="igv-grid-dialog">'),$column=$('<div class="igv-col igv-col-1-8">'),$row.append($column[0]),$column=$('<div class="igv-col igv-col-3-8">'),$columnFiller=$('<div class="igv-col-filler-ok-button">'),$columnFiller.text("OK"),this.$ok=$columnFiller,$column.append($columnFiller[0]),$row.append($column[0]),$column=$('<div class="igv-col igv-col-3-8">'),$columnFiller=$('<div class="igv-col-filler-cancel-button">'),$columnFiller.text("Cancel"),$columnFiller.click(function(){self.$dialogInput.val(void 0),self.hide()}),$column.append($columnFiller[0]),$row.append($column[0]),$column=$('<div class="igv-col igv-col-1-8">'),$row.append($column[0]),$rowContainer=$('<div class="igv-grid-rect">'),$rowContainer.append($row[0]),$rowContainer},igv.Dialog.prototype.rowOfLabel=function(){var rowContainer,row,column;return row=$('<div class="igv-grid-dialog">'),column=$('<div class="igv-col igv-col-4-4">'),this.$dialogLabel=$('<div class="igv-user-input-label">'),column.append(this.$dialogLabel[0]),row.append(column[0]),rowContainer=$('<div class="igv-grid-rect">'),rowContainer.append(row[0]),rowContainer},igv.Dialog.prototype.rowOfInput=function(){var rowContainer,row,column;return row=$('<div class="igv-grid-dialog">'),column=$('<div class="igv-col igv-col-4-4">'),this.$dialogInput=$('<input class="igv-user-input-dialog" type="text" value="#000000">'),column.append(this.$dialogInput[0]),row.append(column[0]),rowContainer=$('<div class="igv-grid-rect">'),rowContainer.append(row[0]),rowContainer},igv.Dialog.prototype.configure=function(labelHTMLFunction,inputValue,clickFunction){var self=this;labelHTMLFunction?(self.$dialogLabel.html(labelHTMLFunction()),self.$dialogLabel.show()):self.$dialogLabel.hide(),void 0!==inputValue?(self.$dialogInput.val(inputValue),self.$dialogInput.unbind(),self.$dialogInput.change(function(){clickFunction&&clickFunction(),self.hide()}),self.$dialogInput.show()):self.$dialogInput.hide(),self.$ok.unbind(),self.$ok.click(function(){clickFunction&&clickFunction(),self.hide()})},igv.Dialog.prototype.hide=function(){this.$container.hasClass("igv-grid-container-dialog")&&this.$container.offset({left:0,top:0}),this.$container.hide()},igv.Dialog.prototype.show=function($host){var body_scrolltop,offset,_top,_left;body_scrolltop=$("body").scrollTop(),this.$container.hasClass("igv-grid-container-dialog")&&(offset=$host.offset(),_top=offset.top+body_scrolltop,_left=$host.outerWidth()-300,this.$container.offset({left:_left,top:_top})),this.$container.show()},igv}(igv||{}),igv=function(igv){function createTrackLocationState(e,viewport){var genomicLocation,canvasCoords,xOrigin,referenceFrame=viewport.genomicState.referenceFrame;if(canvasCoords=igv.translateMouseCoordinates(e,viewport.canvas),genomicLocation=Math.floor(referenceFrame.start+referenceFrame.toBP(canvasCoords.x)),void 0!==genomicLocation&&null!==viewport.tile)return xOrigin=Math.round(referenceFrame.toPixels(viewport.tile.startBP-referenceFrame.start)),{genomicLocation:genomicLocation,x:canvasCoords.x-xOrigin,y:canvasCoords.y}}function clampPopoverLocation(pageX,pageY,popover){var left,popupRect,containerCoordinates={x:pageX,y:pageY},containerRect={x:0,y:0,width:$(window).width(),height:$(window).height()},popupX=pageX,popupY=pageY;return popupX-=popover.$parent.offset().left,popupY-=popover.$parent.offset().top,popupRect={x:popupX,y:popupY,width:popover.$popover.outerWidth(),height:popover.$popover.outerHeight()},left=popupX,containerCoordinates.x+popupRect.width>containerRect.width&&(left=popupX-popupRect.width),{left:left+"px",top:popupY+"px"}}return igv.Popover=function($parent){this.$parent=this.initializationHelper($parent)},igv.Popover.prototype.initializationHelper=function($parent){var $popoverHeader,self=this;return this.$popover=$('<div class="igv-popover">'),$parent.append(this.$popover),$popoverHeader=$('<div class="igv-popover-header">'),this.$popover.append($popoverHeader),igv.attachDialogCloseHandlerWithParent($popoverHeader,function(){self.hide()}),this.$popoverContent=$("<div>"),this.$popover.append(this.$popoverContent),this.$popover.draggable({handle:$popoverHeader.get(0)
+}),$parent},igv.Popover.prototype.hide=function(){this.$popover.hide()},igv.Popover.prototype.presentTrackGearMenu=function(pageX,pageY,trackView){var $container,items;items=igv.trackMenuItemList(this,trackView),_.size(items)>0&&(this.$popoverContent.empty(),this.$popoverContent.removeClass("igv-popover-track-popup-content"),$container=$('<div class="igv-track-menu-container">'),this.$popoverContent.append($container),_.each(items,function(item){item.init&&item.init(),$container.append(item.object)}),this.$popover.css(clampPopoverLocation(pageX,pageY,this)),this.$popover.show(),this.$popover.offset(igv.constrainBBox(this.$popover,$(igv.browser.trackContainerDiv))))},igv.Popover.prototype.presentTrackPopupMenu=function(e,viewport){var trackLocationState,$container,menuItems;viewport.trackView.track;trackLocationState=createTrackLocationState(e,viewport),void 0!==trackLocationState&&(menuItems=igv.trackPopupMenuItemList(this,viewport,trackLocationState.genomicLocation,trackLocationState.x,trackLocationState.y),_.size(menuItems)>0&&(this.$popoverContent.empty(),this.$popoverContent.removeClass("igv-popover-track-popup-content"),$container=$('<div class="igv-track-menu-container">'),this.$popoverContent.append($container),_.each(menuItems,function(item){$container.append(item.object)}),this.$popover.css(clampPopoverLocation(e.pageX,e.pageY,this)),this.$popover.show()))},igv.Popover.prototype.presentTrackPopup=function(e,viewport){var trackLocationState,dataList,popupClickHandlerResult,content,config,track=viewport.trackView.track;viewport.genomicState.referenceFrame;trackLocationState=createTrackLocationState(e,viewport),void 0!==trackLocationState&&(config={popover:this,viewport:viewport,genomicLocation:trackLocationState.genomicLocation,x:trackLocationState.x,y:trackLocationState.y},dataList=track.popupDataWithConfiguration(config),popupClickHandlerResult=igv.browser.fireEvent("trackclick",[track,dataList]),void 0===popupClickHandlerResult?_.size(dataList)>0&&(content=igv.formatPopoverText(dataList)):"string"==typeof popupClickHandlerResult&&(content=popupClickHandlerResult),this.presentContent(e.pageX,e.pageY,content))},igv.Popover.prototype.presentContent=function(pageX,pageY,content){var $container;void 0!==content&&(this.$popoverContent.empty(),this.$popoverContent.addClass("igv-popover-track-popup-content"),$container=$('<div class="igv-track-menu-container">'),this.$popoverContent.append($container),this.$popoverContent.html(content),this.$popover.css(clampPopoverLocation(pageX,pageY,this)),this.$popover.show())},igv}(igv||{}),igv=function(igv){return igv.TrackMenuPopupDialog=function(trackMenu,dialogLabel,inputValue,ok,width,height){var dialogLabelRE,inputValueRE,htmlString,myself=this;htmlString='<div id="dialog-form" title="DIALOG_LABEL"><p class="validateTips"></p><form><fieldset><input type="text" name="name" id="name" value="INPUT_VALUE"></fieldset></form></div>',dialogLabelRE=new RegExp("DIALOG_LABEL","g"),htmlString=htmlString.replace(dialogLabelRE,dialogLabel),inputValueRE=new RegExp("INPUT_VALUE","g"),htmlString=htmlString.replace(inputValueRE,inputValue),$("body").append($.parseHTML(htmlString)),this.dialogForm=$("#dialog-form"),this.form=this.dialogForm.find("form"),this.name=$("#name"),this.tips=$(".validateTips"),this.dialogForm.dialog({autoOpen:!1,width:width||320,height:height||256,modal:!0,buttons:{ok:ok,cancel:function(){myself.dialogForm.dialog("close")}},close:function(){myself.form[0].reset(),myself.dialogForm.remove(),myself.dialogForm=void 0,trackMenu&&trackMenu.hide()}}),this.form.on("submit",function(event){event.preventDefault(),$("#users").find(" tbody").append("<tr><td>"+myself.name.val()+"</td></tr>"),myself.dialogForm.dialog("close")})},igv.TrackMenuPopupDialog.prototype.updateTips=function(t){var myself=this;this.tips.text(t).addClass("ui-state-highlight"),setTimeout(function(){myself.tips.removeClass("ui-state-highlight",1500)},500)},igv}(igv||{}),igv=function(igv){return igv.UserFeedback=function($parent){var myself=this;this.userFeedback=$('<div class="igv-user-feedback">'),$parent.append(this.userFeedback[0]),this.userFeedbackHeader=$("<div>"),this.userFeedback.append(this.userFeedbackHeader[0]),this.userFeedbackAlert=$('<i class="fa fa-exclamation-triangle">'),this.userFeedbackHeader.append(this.userFeedbackAlert[0]),this.userFeedbackDismiss=$('<i class="fa fa-times-circle">'),this.userFeedbackHeader.append(this.userFeedbackDismiss[0]),this.userFeedbackDismiss.click(function(){myself.userFeedbackBodyCopy.html(""),myself.userFeedback.hide()}),this.userFeedbackBodyCopy=$("<div>"),this.userFeedback.append(this.userFeedbackBodyCopy[0])},igv.UserFeedback.prototype.show=function(){this.userFeedback.show()},igv.UserFeedback.prototype.hide=function(){this.userFeedback.hide()},igv.UserFeedback.prototype.bodyCopy=function(htmlString){this.userFeedbackBodyCopy.html(htmlString)},igv}(igv||{}),igv=function(igv){function initAlleles(variant){function calcHeterozygosity(ac,an){var refFrac,sum=0,altFreqs=Array.isArray(ac)?ac:ac.split(","),altCount=0;return an=Array.isArray(an)?parseInt(an[0]):parseInt(an),altFreqs.forEach(function(altFreq){var a=parseInt(altFreq),altFrac=a/an;sum+=altFrac*altFrac,altCount+=a}),refFrac=(an-altCount)/an,sum+=refFrac*refFrac,1-sum}var altTokens=variant.alternateBases.split(","),minAltLength=variant.referenceBases.length,maxAltLength=variant.referenceBases.length;variant.alleles=[],"str"===variant.type&&(variant.start=variant.pos-1,variant.end=variant.start+variant.referenceBases.length),"."===variant.alternateBases?variant.heterozygosity=0:(altTokens.forEach(function(alt){var s,e,diff;variant.alleles.push(alt),"str"!==variant.type&&alt.length>0&&(diff=variant.referenceBases.length-alt.length,diff>0?(s=variant.pos-1+alt.length,e=s+diff):diff<0?(s=variant.pos-1+variant.referenceBases.length,e=s+1):(s=variant.pos-1,e=s+1),variant.start=void 0===variant.start?s:Math.min(variant.start,s),variant.end=void 0===variant.end?e:Math.max(variant.end,e)),minAltLength=Math.min(minAltLength,alt.length),maxAltLength=Math.max(maxAltLength,alt.length)}),variant.info.AC&&variant.info.AN&&(variant.heterozygosity=calcHeterozygosity(variant.info.AC,variant.info.AN).toFixed(3))),variant.minAltLength=minAltLength,variant.maxAltLength=maxAltLength}function arrayToCommaString(value){return Array.isArray(value)?value.join(","):value}return igv.createVCFVariant=function(tokens){function getInfoObject(infoStr){if(infoStr){var info={};return infoStr.split(";").forEach(function(elem){var element=elem.split("=");info[element[0]]=element[1]}),info}}var variant=new igv.Variant;return variant.chr=tokens[0],variant.pos=parseInt(tokens[1]),variant.names=tokens[2],variant.referenceBases=tokens[3],variant.alternateBases=tokens[4],variant.quality=parseInt(tokens[5]),variant.filter=tokens[6],variant.info=getInfoObject(tokens[7]),variant.info.PERIOD&&(variant.type="str"),initAlleles(variant),variant},igv.createGAVariant=function(json){var variant=new igv.Variant;variant.chr=json.referenceName,variant.pos=parseInt(json.start),variant.names=arrayToCommaString(json.names),variant.referenceBases=json.referenceBases+"",variant.alternateBases=json.alternateBases+"",variant.quality=json.quality,variant.filter=arrayToCommaString(json.filter),variant.info=json.info,variant.info.PERIOD&&(variant.type="str"),variant.calls={};var id,order=0;return json.calls&&json.calls.forEach(function(call){id=call.callSetId,variant.calls[id]=call,order++}),initAlleles(variant),variant},igv.Variant=function(){},igv.Variant.prototype.popupData=function(genomicLocation){var fields,gt,self=this;return fields=[{name:"Chr",value:this.chr},{name:"Pos",value:this.pos},{name:"Names",value:this.names?this.names:""},{name:"Ref",value:this.referenceBases},{name:"Alt",value:this.alternateBases},{name:"Qual",value:this.quality},{name:"Filter",value:this.filter}],this.hasOwnProperty("heterozygosity")&&fields.push({name:"Heterozygosity",value:this.heterozygosity}),this.calls&&1===this.calls.length&&(fields.push("<hr>"),gt=this.alleles[this.calls[0].genotype[0]]+this.alleles[this.calls[0].genotype[1]],fields.push({name:"Genotype",value:gt})),this.info&&(fields.push("<hr>"),Object.keys(this.info).forEach(function(key){fields.push({name:key,value:arrayToCommaString(self.info[key])})})),fields},igv}(igv||{}),igv=function(igv){function getCallsetsLength(){var length=0,callSets=this.callSets;return Object.keys(callSets).forEach(function(key){length+=callSets[key].length}),length}function computeVisibilityWindow(){if(this.callSets){var length=getCallsetsLength.call(this);length<10?this.visibilityWindow=DEFAULT_VISIBILITY_WINDOW:this.visibilityWindow=1e3+2500/length*40}else this.visibilityWindow=DEFAULT_VISIBILITY_WINDOW;this.featureSource.visibilityWindow=this.visibilityWindow}function getAlleleString(call,variant,alleleNum){return alleleNum=alleleNum<=0?0:1,call.genotype[alleleNum]>0?variant.alleles[call.genotype[alleleNum]-1]:variant.referenceBases}function sortCallSets(callSets,variant,direction){var d="DESC"===direction?1:-1;Object.keys(callSets).forEach(function(property){callSets[property].sort(function(a,b){var aNan=isNaN(variant.calls[a.id].genotype[0]),bNan=isNaN(variant.calls[b.id].genotype[0]);if(aNan&&bNan)return 0;if(aNan)return 1;if(bNan)return-1;var a0=getAlleleString(variant.calls[a.id],variant,0),a1=getAlleleString(variant.calls[a.id],variant,1),b0=getAlleleString(variant.calls[b.id],variant,0),b1=getAlleleString(variant.calls[b.id],variant,1),result=Math.max(b0.length,b1.length)-Math.max(a0.length,a1.length);return 0===result&&(result=Math.min(b0.length,b1.length)-Math.min(a0.length,a1.length)),d*result})})}function extractPopupData(call,variant){var popupData,i,allele,gt="",numRepeats="",alleleFrac="";if("str"===variant.type){var info=variant.info,alt_ac=info.AC?info.AC.split(","):void 0;if(!isNaN(call.genotype[0]))for(i=0;i<call.genotype.length;i++){allele=getAlleleString(call,variant,i),gt+=allele,numRepeats+=(allele.length/info.PERIOD).toString();var ac=0===call.genotype[i]?info.REFAC:alt_ac[call.genotype[i]-1];alleleFrac+=(parseInt(ac)/parseInt(info.AN)).toFixed(3),i<call.genotype.length-1&&(gt+=" | ",numRepeats+=" | ",alleleFrac+=" | ")}}else call.genotype.forEach(function(i){gt+=0===i?variant.referenceBases:variant.alternateBases[i-1]});popupData=[],void 0!==call.callSetName&&popupData.push({name:"Name",value:call.callSetName}),popupData.push({name:"Genotype",value:gt}),numRepeats&&popupData.push({name:"Repeats",value:numRepeats}),alleleFrac&&popupData.push({name:"Allele Fraction",value:alleleFrac}),void 0!==call.phaseset&&popupData.push({name:"Phase set",value:call.phaseset}),void 0!==call.genotypeLikelihood&&popupData.push({name:"genotypeLikelihood",value:call.genotypeLikelihood.toString()});var attr=igv.sampleInformation.getAttributes(call.callSetName);attr&&Object.keys(attr).forEach(function(attrName){var displayText=attrName.replace(/([A-Z])/g," $1");displayText=displayText.charAt(0).toUpperCase()+displayText.slice(1),popupData.push({name:displayText,value:attr[attrName]})});var infoKeys=Object.keys(call.info);return infoKeys.length&&popupData.push("<hr>"),infoKeys.forEach(function(key){popupData.push({name:key,value:call.info[key]})}),popupData}var DEFAULT_VISIBILITY_WINDOW=1e5,sortDirection="ASC";return igv.VariantTrack=function(config){this.visibilityWindow=void 0===config.visibilityWindow?"compute":config.visibilityWindow,igv.configTrack(this,config),this.displayMode=config.displayMode||"EXPANDED",this.labelDisplayMode=config.labelDisplayMode,this.variantHeight=config.variantHeight||10,this.squishedCallHeight=config.squishedCallHeight||1,this.expandedCallHeight=config.expandedCallHeight||10,this.expandedVGap=void 0!==config.expandedVGap?config.expandedVGap:2,this.squishedVGap=void 0!==config.squishedVGap?config.squishedVGap:1,this.expandedGroupGap=config.expandedGroupGap||10,this.squishedGroupGap=config.squishedGroupGap||5,this.featureHeight=config.featureHeight||14,this.featureSource=new igv.FeatureSource(config),this.homrefColor=config.homrefColor||"rgb(200, 200, 200)",this.homvarColor=config.homvarColor||"rgb(17,248,254)",this.hetvarColor=config.hetvarColor||"rgb(34,12,253)",this.nRows=1,this.groupBy="NONE"},igv.VariantTrack.prototype.getFileHeader=function(){var self=this;return new Promise(function(fulfill,reject){"function"==typeof self.featureSource.getFileHeader?self.featureSource.getFileHeader().then(function(header){header&&(header.name&&!self.config.name&&(self.name=header.name),header.color&&!self.config.color&&(self.color="rgb("+header.color+")"),self.callSets={},self.callSetGroups=["NONE"],self.callSets.NONE=header.callSets,"compute"===self.visibilityWindow&&computeVisibilityWindow.call(self)),fulfill(header)}).catch(reject):fulfill(null)})},igv.VariantTrack.prototype.getFeatures=function(chr,bpStart,bpEnd){var self=this;return new Promise(function(fulfill,reject){self.featureSource.getFeatures(chr,bpStart,bpEnd).then(function(features){fulfill(features)}).catch(reject)})},igv.VariantTrack.prototype.computePixelHeight=function(features){var nRows,h,callSets=this.callSets,nCalls=callSets?getCallsetsLength.call(this):0,callHeight="EXPANDED"===this.displayMode?this.expandedCallHeight:this.squishedCallHeight,vGap="EXPANDED"===this.displayMode?this.expandedVGap:this.squishedVGap,groupGap="EXPANDED"===this.displayMode?this.expandedGroupGap:this.squishedGroupGap,groupSpace=Object.keys(callSets).length*groupGap;if("COLLAPSED"===this.displayMode)return this.nRows=1,10+this.variantHeight;var maxRow=0;return features&&"function"==typeof features.forEach&&features.forEach(function(feature){feature.row&&feature.row>maxRow&&(maxRow=feature.row)}),nRows=maxRow+1,h=10+nRows*(this.variantHeight+vGap),this.nRows=nRows,h+vGap+groupSpace+nCalls*(callHeight+vGap)},igv.VariantTrack.prototype.draw=function(options){function getFillColor(allele){return allele.length<variant.referenceBases.length?lowColorScale.getColor(allele.length):allele.length>variant.referenceBases.length?highColorScale.getColor(allele.length):"rgb(150,150,150)"}var px,px1,pw,py,h,i,variant,call,callSet,j,k,group,allRef,allVar,callSets,nCalls,firstAllele,secondAllele,lowColorScale,highColorScale,period,callsDrawn,self=this,featureList=options.features,ctx=options.context,bpPerPixel=options.bpPerPixel,bpStart=options.bpStart,pixelWidth=options.pixelWidth,pixelHeight=options.pixelHeight,bpEnd=bpStart+pixelWidth*bpPerPixel+1,callHeight="EXPANDED"===this.displayMode?this.expandedCallHeight:this.squishedCallHeight,vGap="EXPANDED"===this.displayMode?this.expandedVGap:this.squishedVGap,groupGap="EXPANDED"===this.displayMode?this.expandedGroupGap:this.squishedGroupGap;if(this.variantBandHeight=10+this.nRows*(this.variantHeight+vGap),callSets=this.callSets,nCalls=getCallsetsLength.call(this),igv.graphics.fillRect(ctx,0,0,pixelWidth,pixelHeight,{fillStyle:"rgb(255, 255, 255)"}),callSets&&nCalls>0&&"COLLAPSED"!==this.displayMode&&igv.graphics.strokeLine(ctx,0,this.variantBandHeight,pixelWidth,this.variantBandHeight,{strokeStyle:"rgb(224,224,224) "}),featureList){for(i=0,len=featureList.length;i<len;i++)if(variant=featureList[i],!(variant.end<bpStart)){if(variant.start>bpEnd)break;if(py=10+("COLLAPSED"===this.displayMode?0:variant.row*(this.variantHeight+vGap)),h=this.variantHeight,px=Math.round((variant.start-bpStart)/bpPerPixel),px1=Math.round((variant.end-bpStart)/bpPerPixel),pw=Math.max(1,px1-px),pw<3?(pw=3,px-=1):pw>5&&(px+=1,pw-=2),"str"===variant.type?(period=parseInt(variant.info.PERIOD),variantColors=["rgb(150,150,150)","rgb(255,0,0)","rgb(255,255,0)","rgb(0,0,255)","rgb(0,255,0)","rgb(128,0,128)"],period<1?period=1:period>6&&(period=6),ctx.fillStyle=variantColors[period-1]):ctx.fillStyle=this.color,ctx.fillRect(px,py,pw,h),callSets&&variant.calls&&"COLLAPSED"!==this.displayMode)for(h=callHeight,"str"===variant.type&&(lowColorScale=new igv.GradientColorScale({low:variant.minAltLength,lowR:135,lowG:206,lowB:250,high:variant.referenceBases.length,highR:150,highG:150,highB:150}),highColorScale=new igv.GradientColorScale({low:variant.referenceBases.length,lowR:150,lowG:150,lowB:150,high:variant.maxAltLength,highR:255,highG:69,highB:0})),callsDrawn=0,j=0;j<this.callSetGroups.length;j++)for(group=callSets[this.callSetGroups[j]],k=0;k<group.length;k++)callSet=group[k],call=variant.calls[callSet.id],call&&(py=self.variantBandHeight+vGap+(callsDrawn+variant.row)*(h+vGap)+j*groupGap,"str"!==variant.type?(allVar=allRef=!0,call.genotype.forEach(function(g){0!=g&&(allRef=!1),0==g&&(allVar=!1)}),allRef?ctx.fillStyle=this.homrefColor:allVar?ctx.fillStyle=this.homvarColor:ctx.fillStyle=this.hetvarColor,ctx.fillRect(px,py,pw,h)):isNaN(call.genotype[0])?(ctx.strokeStyle="#B0B0B0",ctx.strokeRect(px,py,pw,h)):(firstAllele=getAlleleString(call,variant,0),secondAllele=getAlleleString(call,variant,1),ctx.fillStyle=getFillColor(firstAllele),ctx.fillRect(px,py,pw,h/2),ctx.fillStyle=getFillColor(secondAllele),ctx.fillRect(px,py+h/2,pw,h/2),"EXPANDED"===self.displayMode&&(ctx.beginPath(),ctx.moveTo(px,py+h/2),ctx.lineTo(px+pw,py+h/2),ctx.strokeStyle="#000",ctx.stroke()))),callsDrawn++}}else console.log("No feature list")},igv.VariantTrack.prototype.altClick=function(genomicLocation,referenceFrame,event){var chr=referenceFrame.chrName,tolerance=Math.floor(2*referenceFrame.bpPerPixel),featureList=this.featureSource.featureCache.queryFeatures(chr,genomicLocation-tolerance,genomicLocation+tolerance),self=this;this.callSets&&featureList&&featureList.length>0&&featureList.forEach(function(variant){variant.start<=genomicLocation+tolerance&&variant.end>genomicLocation-tolerance&&(sortCallSets(self.callSets,variant,sortDirection),sortDirection="ASC"===sortDirection?"DESC":"ASC",self.trackView.update())})},igv.VariantTrack.prototype.popupDataWithConfiguration=function(config){return this.popupData(config.genomicLocation,config.x,config.y,config.viewport.genomicState.referenceFrame)},igv.VariantTrack.prototype.popupData=function(genomicLocation,xOffset,yOffset,referenceFrame){if(this.featureSource.featureCache){var group,chr=referenceFrame.chrName,tolerance=Math.floor(2*referenceFrame.bpPerPixel),featureList=this.featureSource.featureCache.queryFeatures(chr,genomicLocation-tolerance,genomicLocation+tolerance),vGap="EXPANDED"===this.displayMode?this.expandedVGap:this.squishedVGap,groupGap="EXPANDED"===this.displayMode?this.expandedGroupGap:this.squishedGroupGap,popupData=[],self=this;return featureList&&featureList.length>0&&featureList.forEach(function(variant){var row,callHeight,callSets,cs,call;if(variant.start<=genomicLocation+tolerance&&variant.end>genomicLocation-tolerance)if(popupData.length>0&&popupData.push("<HR>"),"COLLAPSED"==self.displayMode)Array.prototype.push.apply(popupData,variant.popupData(genomicLocation,self.type));else if(yOffset<=self.variantBandHeight)row=Math.floor((yOffset-10)/(self.variantHeight+vGap)),variant.row===row&&Array.prototype.push.apply(popupData,variant.popupData(genomicLocation),self.type);else if(callSets=self.callSets,callSets&&variant.calls){callHeight="SQUISHED"===self.displayMode?self.squishedCallHeight:self.expandedCallHeight;var totalCalls=0;for(group=0;group<self.callSetGroups.length;group++){var groupName=self.callSetGroups[group],groupCalls=callSets[groupName].length;if(yOffset<=self.variantBandHeight+vGap+(totalCalls+groupCalls)*(callHeight+vGap)+group*groupGap){row=Math.floor((yOffset-(self.variantBandHeight+vGap+totalCalls*(callHeight+vGap)+group*groupGap))/(callHeight+vGap));break}totalCalls+=groupCalls}row>=0&&(cs=callSets[groupName][row],call=variant.calls[cs.id],Array.prototype.push.apply(popupData,extractPopupData(call,variant)))}}),popupData}},igv.VariantTrack.prototype.popupMenuItemList=function(config){var menuItems=[],self=this;"NONE"!==this.groupBy&&igv.sampleInformation.hasAttributes()&&menuItems.push({name:"Sort groups",click:function(){try{self.callSetGroups.sort(function(a,b){return a-b})}catch(err){self.callSetGroups.sort()}self.trackView.update(),config.popover.hide()}});var referenceFrame=config.viewport.genomicState.referenceFrame,genomicLocation=config.genomicLocation,chr=referenceFrame.chrName,tolerance=Math.floor(2*referenceFrame.bpPerPixel),featureList=this.featureSource.featureCache.queryFeatures(chr,genomicLocation-tolerance,genomicLocation+tolerance);return this.callSets&&featureList&&featureList.length>0&&featureList.forEach(function(variant){variant.start<=genomicLocation+tolerance&&variant.end>genomicLocation-tolerance&&"str"===variant.type&&menuItems.push({name:"Sort by allele length",click:function(){sortCallSets(self.callSets,variant,sortDirection),sortDirection="ASC"===sortDirection?"DESC":"ASC",self.trackView.update(),config.popover.hide()}})}),menuItems},igv.VariantTrack.prototype.groupCallSets=function(attribute){var group,attr,key,groupedCallSets={},callSetGroups=[],self=this;Object.keys(this.callSets).forEach(function(i){group=self.callSets[i],group.forEach(function(callSet){key="NONE","NONE"!==attribute&&(attr=igv.sampleInformation.getAttributes(callSet.name),attr&&attr[attribute]&&(key=attr[attribute])),groupedCallSets.hasOwnProperty(key)||(groupedCallSets[key]=[],callSetGroups.push(key)),groupedCallSets[key].push(callSet)})}),this.callSets=groupedCallSets,this.callSetGroups=callSetGroups,this.groupBy=attribute,this.trackView.update()},igv.VariantTrack.prototype.menuItemList=function(popover){function groupByMarkup(buttonVal,selfVal,lut){return buttonVal===selfVal?'<div><i class="fa fa-check fa-check-shim"></i>'+lut[buttonVal]+"</div>":'<div><i class="fa fa-check fa-check-shim fa-check-hidden"></i>'+lut[buttonVal]+"</div>"}function displayModeMarkup(index,displayMode,selfDisplayMode){var lut,chosen;return lut={COLLAPSED:"Collapse",SQUISHED:"Squish",EXPANDED:"Expand"},chosen=0===index?'<div class="igv-track-menu-border-top">':"<div>",displayMode===selfDisplayMode?chosen+'<i class="fa fa-check fa-check-shim"></i>'+lut[displayMode]+"</div>":chosen+'<i class="fa fa-check fa-check-shim fa-check-hidden"></i>'+lut[displayMode]+"</div>"}var mapped,self=this,menuItems=[];if(mapped=_.map(["COLLAPSED","SQUISHED","EXPANDED"],function(displayMode,index){return{object:$(displayModeMarkup(index,displayMode,self.displayMode)),click:function(){popover.hide(),self.displayMode=displayMode,self.trackView.update()}}}),menuItems=menuItems.concat(mapped),igv.sampleInformation.hasAttributes()){var $groupBy={object:$('<div class="igv-track-menu-border-top">Group By:</div>')};menuItems.push($groupBy);var attrs={},attributes=igv.sampleInformation.getAttributeNames();attributes.forEach(function(attribute){var result=attribute.replace(/([A-Z])/g," $1");result=result.charAt(0).toUpperCase()+result.slice(1),attrs[attribute]=result}),attributes.push("NONE"),attrs.NONE="None";var mappedAttrs=_.map(attributes,function(attr,index){return{object:$(groupByMarkup(attr,self.groupBy,attrs)),click:function(){popover.hide(),self.groupCallSets(attr)}}});menuItems=menuItems.concat(mappedAttrs)}return menuItems},igv}(igv||{}),igv=function(igv){function extractCallFields(tokens){var i,callFields={genotypeIndex:-1,fields:tokens};for(i=0;i<tokens.length;i++)"GT"===tokens[i]&&(callFields.genotypeIndex=i);return callFields}return igv.VcfParser=function(type){this.type=type},igv.VcfParser.prototype.parseHeader=function(data){var line,i,j,tokens,id,values,ltIdx,gtIdx,type,lines=data.splitLines(),len=lines.length,header={};if(!lines[0].startsWith("##fileformat"))throw new Error("Invalid VCF file: missing fileformat line");for(header.version=lines[0].substr(13),i=1;i<len&&(line=lines[i].trim(),line.startsWith("#"));i++)if(id=null,values={},line.startsWith("##")){if(line.startsWith("##INFO")||line.startsWith("##FILTER")||line.startsWith("##FORMAT")){if(ltIdx=line.indexOf("<"),gtIdx=line.lastIndexOf(">"),!(ltIdx>2&&gtIdx>0)){console.log("Malformed VCF header line: "+line);continue}type=line.substring(2,ltIdx-1),header[type]||(header[type]={}),tokens=igv.splitStringRespectingQuotes(line.substring(ltIdx+1,gtIdx-1),","),tokens.forEach(function(token){var kv=token.split("=");kv.length>1&&("ID"===kv[0]?id=kv[1]:values[kv[0]]=kv[1])}),id&&(header[type][id]=values)}}else if(line.startsWith("#CHROM")&&(tokens=line.split("\t"),tokens.length>8))for(header.callSets=[],j=9;j<tokens.length;j++)header.callSets.push({id:j,name:tokens[j]});return this.header=header,header},igv.VcfParser.prototype.parseFeatures=function(data){var lines=data.split("\n"),allFeatures=[],callSets=this.header.callSets;return lines.forEach(function(line){var variant,tokens,callFields,index,token;if(!line.startsWith("#")&&(tokens=line.split("\t"),tokens.length>=8&&(variant=igv.createVCFVariant(tokens),variant.header=this.header,allFeatures.push(variant),tokens.length>9)))for(callFields=extractCallFields(tokens[8].split(":")),variant.calls={},index=9;index<tokens.length;index++){token=tokens[index];var callSet=callSets[index-9],call={callSetName:callSet.name,info:{}};variant.calls[callSet.id]=call,token.split(":").forEach(function(callToken,idx){switch(idx){case callFields.genotypeIndex:call.genotype=[],callToken.split(/[\|\/]/).forEach(function(s){call.genotype.push(parseInt(s))});break;default:call.info[callFields.fields[idx]]=callToken}})}}),allFeatures},igv}(igv||{}),igv=function(igv){return igv.Viewport=function(trackView,$container,locusIndex){this.initializationHelper(trackView,$container,locusIndex)},igv.Viewport.prototype.initializationHelper=function(trackView,$container,locusIndex){function createZoomInNotice(){var $container,$child;return $child=$("<div>"),$child.text("Zoom in to see features"),$container=$('<div class="zoom-in-notice-container">'),$container.append($child),$container.hide(),$container}function addViewportBorders($viewport,locusIndex,lociCount){1!==lociCount&&locusIndex!==lociCount-1&&$viewport.addClass("igv-viewport-div-border-right")}var description,$trackLabel,$spinner,dimen,$div,self=this;this.trackView=trackView,this.id=_.uniqueId("viewport_"),this.genomicState=igv.browser.genomicStateList[locusIndex],this.$viewport=$('<div class="igv-viewport-div">'),$container.append(this.$viewport),this.$viewport.data("viewport",this.id),this.$viewport.data("locusindex",this.genomicState.locusIndex),addViewportBorders(this.$viewport,this.genomicState.locusIndex,_.size(igv.browser.genomicStateList)),this.setWidth(igv.browser.viewportContainerWidth()/this.genomicState.locusCount),this.contentDiv=$('<div class="igv-viewport-content-div">')[0],this.$viewport.append(this.contentDiv),trackView.track instanceof igv.SequenceTrack&&this.$viewport.addClass("igv-viewport-sequence"),trackView.track instanceof igv.RulerTrack&&($div=$("<div>",{class:"igv-whole-genome-container"}),$(this.contentDiv).append($div),$div.hide()),this.genomicState.locusCount>1&&trackView.track instanceof igv.RulerTrack&&(this.$viewport.addClass("igv-viewport-ruler"),this.$close=$('<div class="igv-viewport-fa-close">'),this.$closeButton=$('<i class="fa fa-times-circle">'),this.$close.append(this.$closeButton),this.$close.click(function(e){igv.browser.closeMultiLocusPanelWithGenomicState(self.genomicState)}),this.$viewport.append(this.$close)),this.canvas=$("<canvas>")[0],$(this.contentDiv).append(this.canvas),this.canvas.setAttribute("width",this.contentDiv.clientWidth),this.canvas.setAttribute("height",this.contentDiv.clientHeight),this.ctx=this.canvas.getContext("2d"),this.genomicState.locusCount>1&&trackView.track instanceof igv.RulerTrack&&$(this.contentDiv).append(igv.browser.rulerTrack.locusLabelWithViewport(this)),void 0===trackView.track.visibilityWindow&&trackView.track.supportsWholeGenome||(self.$zoomInNotice=createZoomInNotice(),$(this.contentDiv).append(self.$zoomInNotice)),trackView.track.name&&0===this.genomicState.locusIndex&&(description="function"==typeof trackView.track.description?trackView.track.description():trackView.track.description||trackView.track.name,$trackLabel=$('<div class="igv-track-label">'),$trackLabel.html(trackView.track.name),$trackLabel.click(function(e){igv.popover.presentContent(e.pageX,e.pageY,description)}),this.$viewport.append($trackLabel),igv.browser.$trackLabelToggle.hasClass("igv-nav-bar-toggle-button-on")&&$trackLabel.hide()),trackView.track instanceof igv.RulerTrack||(this.addMouseHandlers(),dimen=this.$viewport.height(),dimen>32&&(dimen=32),$spinner=$('<div class="igv-viewport-spinner">'),$spinner.css({"font-size":dimen+"px"}),$spinner.append($('<i class="fa fa-spinner fa-spin fa-fw">')),this.$viewport.append($spinner),this.stopSpinner())},igv.Viewport.prototype.setWidth=function(width){var percentage;this.$viewport.width(width),percentage=this.$viewport.width()/this.$viewport.outerWidth(),this.$viewport.width(Math.floor(percentage*width))},igv.Viewport.prototype.addMouseHandlers=function(){var popupTimer,doubleClickDelay,self=this,isMouseDown=!1,lastMouseX=void 0,mouseDownX=void 0,lastClickTime=0;doubleClickDelay=igv.browser.constants.doubleClickDelay,$(self.canvas).contextmenu(function(e){e.preventDefault(),e=$.event.fix(e),e.stopPropagation(),igv.popover.presentTrackPopupMenu(e,self)}),$(self.canvas).mousedown(function(e){var canvasCoords;e.preventDefault(),isMouseDown=!0,canvasCoords=igv.translateMouseCoordinates(e,self.canvas),lastMouseX=canvasCoords.x,mouseDownX=lastMouseX}),$(self.canvas).click(function(e){var canvasCoords,referenceFrame,genomicLocation,time,newCenter,locusString,loci,chr;return e.preventDefault(),e=$.event.fix(e),e.stopPropagation(),referenceFrame=self.genomicState.referenceFrame,void 0===referenceFrame?void console.log("undefined === referenceFrame"):(canvasCoords=igv.translateMouseCoordinates(e,self.canvas),genomicLocation=Math.floor(referenceFrame.start+referenceFrame.toBP(canvasCoords.x)),time=Date.now(),time-lastClickTime<doubleClickDelay?(popupTimer&&(window.clearTimeout(popupTimer),popupTimer=void 0),igv.browser.minimumBasesExtent()>Math.floor(self.$viewport.width()*referenceFrame.bpPerPixel/2)||(newCenter=Math.round(referenceFrame.start+canvasCoords.x*referenceFrame.bpPerPixel),"all"===referenceFrame.chrName.toLowerCase()?(chr=igv.browser.genome.getChromosomeCoordinate(newCenter).chr,1===self.genomicState.locusCount?locusString=chr:(loci=_.map(igv.browser.genomicStateList,function(g){return g.locusSearchString}),loci[self.genomicState.locusIndex]=chr,locusString=loci.join(" ")),igv.browser.parseSearchInput(locusString)):(self.genomicState.referenceFrame.bpPerPixel/=2,self.genomicState.referenceFrame.start=Math.round((newCenter+self.genomicState.referenceFrame.start)/2),igv.browser.updateWithLocusIndex(self.genomicState.locusIndex)))):e.shiftKey?self.trackView.track.shiftClick&&self.tile&&self.trackView.track.shiftClick(genomicLocation,e):e.altKey?self.trackView.track.altClick&&self.tile&&self.trackView.track.altClick(genomicLocation,referenceFrame,e):Math.abs(canvasCoords.x-mouseDownX)<=igv.browser.constants.dragThreshold&&self.trackView.track.popupDataWithConfiguration&&(popupTimer=window.setTimeout(function(){igv.popover.presentTrackPopup(e,self),mouseDownX=void 0,popupTimer=void 0},doubleClickDelay)),mouseDownX=void 0,isMouseDown=!1,lastMouseX=void 0,void(lastClickTime=time))})},igv.Viewport.prototype.goto=function(chr,start,end){igv.popover&&igv.popover.hide(),this.genomicState.referenceFrame.bpPerPixel=(Math.round(end)-Math.round(start))/this.$viewport.width(),this.genomicState.referenceFrame.start=Math.round(start),igv.browser.updateWithLocusIndex(this.genomicState.locusIndex)},igv.Viewport.prototype.startSpinner=function(){var $spinner=this.$viewport.find(".fa-spinner");$spinner.addClass("fa-spin"),$spinner.show()},igv.Viewport.prototype.stopSpinner=function(){var $spinner=this.$viewport.find(".fa-spinner");$spinner.hide(),$spinner.removeClass("fa-spin")},igv.Viewport.prototype.resize=function(){var contentWidth=igv.browser.viewportContainerWidth()/this.genomicState.locusCount;contentWidth>0&&(this.setWidth(contentWidth),this.canvas.style.width=this.$viewport.width()+"px",this.canvas.setAttribute("width",this.$viewport.width()),
+this.update())},igv.Viewport.prototype.update=function(){this.tile&&(this.tile.invalidate=!0),this.repaint()},igv.Viewport.prototype.repaint=function(){function renderControlCanvasWithTrackView(trackView){var buffer2;buffer2=document.createElement("canvas"),buffer2.width=trackView.controlCanvas.width,buffer2.height=trackView.controlCanvas.height,trackView.track.paintAxis(buffer2.getContext("2d"),buffer2.width,buffer2.height),trackView.controlCtx.drawImage(buffer2,0,0)}function doRenderControlCanvas(genomicState,trackView){return trackView.track.paintAxis&&trackView.controlCanvas.width>0&&trackView.controlCanvas.height>0}function viewIsReady(){return igv.browser&&igv.browser.genomicStateList&&igv.browser.genomicStateList[self.genomicState.locusIndex].referenceFrame}var pixelWidth,bpWidth,bpStart,bpEnd,chr,refFrameStart,refFrameEnd,drawConfiguration,buffer,self=this,genomicState=self.genomicState,referenceFrame=genomicState.referenceFrame;if(viewIsReady.call(this)){if(this.$zoomInNotice&&void 0!==this.trackView.track.visibilityWindow&&this.trackView.track.visibilityWindow>0){if(referenceFrame.bpPerPixel*this.$viewport.width()>this.trackView.track.visibilityWindow||"all"===referenceFrame.chrName.toLowerCase()&&!this.trackView.track.supportsWholeGenome)return this.tile=null,this.ctx.clearRect(0,0,this.canvas.width,this.canvas.height),self.stopSpinner(),void this.$zoomInNotice.show();this.$zoomInNotice.hide()}if(chr=referenceFrame.chrName,refFrameStart=referenceFrame.start,refFrameEnd=refFrameStart+referenceFrame.toBP(this.canvas.width),this.paintImage(chr,refFrameStart,refFrameEnd,referenceFrame.bpPerPixel),!this.tile||this.tile.invalidate||!this.tile.containsRange(chr,refFrameStart,refFrameEnd,referenceFrame.bpPerPixel)){var chrLength=igv.browser.genome.getChromosome(chr).bpLength;if(pixelWidth=3*this.canvas.width,bpWidth=referenceFrame.toBP(pixelWidth),bpStart=Math.floor(Math.max(0,referenceFrame.start-bpWidth/3)),bpEnd=Math.ceil(Math.min(chrLength,bpStart+bpWidth)),pixelWidth=(bpEnd-bpStart)/referenceFrame.bpPerPixel,self.loading&&self.loading.start===bpStart&&self.loading.end===bpEnd)return;self.loading={start:bpStart,end:bpEnd},self.startSpinner(),this.trackView.track.getFeatures(referenceFrame.chrName,bpStart,bpEnd,referenceFrame.bpPerPixel).then(function(features){var requiredHeight,roiPromises;return self.loading=void 0,self.stopSpinner(),buffer=document.createElement("canvas"),buffer.width=pixelWidth,buffer.height=self.canvas.height,drawConfiguration={features:features,context:buffer.getContext("2d"),pixelWidth:buffer.width,pixelHeight:buffer.height,bpStart:bpStart,bpEnd:bpEnd,bpPerPixel:referenceFrame.bpPerPixel,referenceFrame:referenceFrame,genomicState:genomicState,viewport:self,viewportWidth:self.$viewport.width(),viewportContainerX:genomicState.referenceFrame.toPixels(genomicState.referenceFrame.start-bpStart),viewportContainerWidth:igv.browser.viewportContainerWidth()},self.drawConfiguration=drawConfiguration,features&&("function"==typeof self.trackView.track.computePixelHeight&&(requiredHeight=self.trackView.track.computePixelHeight(features),requiredHeight!=self.contentDiv.clientHeight&&self.trackView.setContentHeightForViewport(self,requiredHeight)),drawConfiguration.features=features,self.trackView.track.draw(drawConfiguration),doRenderControlCanvas(genomicState,self.trackView)&&renderControlCanvasWithTrackView(self.trackView)),igv.browser.roi?(roiPromises=[],igv.browser.roi.forEach(function(r){roiPromises.push(r.getFeatures(referenceFrame.chrName,bpStart,bpEnd))}),Promise.all(roiPromises)):void 0}).then(function(roiArray){if(roiArray){var i,len;for(i=0,len=roiArray.length;i<len;i++)drawConfiguration.features=roiArray[i],igv.browser.roi[i].draw(drawConfiguration)}}).then(function(ignore){self.tile=new Tile(referenceFrame.chrName,bpStart,bpEnd,referenceFrame.bpPerPixel,buffer),self.paintImage(chr,refFrameStart,refFrameEnd,referenceFrame.bpPerPixel)}).catch(function(error){self.stopSpinner(),self.loading=!1,error instanceof igv.AbortLoad?console.log("Aborted ---"):igv.presentAlert(error)})}}},igv.Viewport.prototype.setContentHeight=function(newHeight){newHeight=Math.min(newHeight,32e3),this.trackView.track.minHeight&&(newHeight=Math.max(this.trackView.track.minHeight,newHeight));var contentHeightStr=newHeight+"px";$(this.contentDiv).height(newHeight),this.canvas.style.height=contentHeightStr,this.canvas.setAttribute("height",newHeight)},igv.Viewport.prototype.paintImage=function(chr,start,end,bpPerPixel){var offset,sx,dx,scale,sWidth,dWidth,iHeight,tile=this.tile;if(this.ctx.clearRect(0,0,this.canvas.width,this.canvas.height),tile&&tile.containsRange(chr,start,end,bpPerPixel))this.xOffset=Math.round((tile.startBP-start)/tile.bpPerPixel),this.ctx.drawImage(tile.image,this.xOffset,0),this.ctx.save(),this.ctx.restore();else if(tile&&tile.overlapsRange(chr,start,end)){var offset=Math.round((start-tile.startBP)/tile.bpPerPixel);offset>0?(sx=offset,dx=0):(sx=0,dx=-offset),dWidth=tile.image.width,bpPerPixel===tile.bpPerPixel?sWidth=dWidth:(scale=bpPerPixel/tile.bpPerPixel,sWidth=Math.round(scale*dWidth)),iHeight=tile.image.height,this.ctx.drawImage(tile.image,sx,0,sWidth,iHeight,dx,0,dWidth,iHeight),this.ctx.save(),this.ctx.restore()}},igv.Viewport.prototype.isLoading=function(){return!(void 0===this.loading)},igv.Viewport.viewportWidthAtLocusIndex=function(locusIndex){var viewport=_.first(igv.Viewport.viewportsWithLocusIndex(locusIndex));return viewport.$viewport.width()},igv.Viewport.viewportsWithLocusIndex=function(locusIndex){var list=[];return _.each(igv.browser.trackViews,function(tv){_.each(tv.viewports,function(vp){locusIndex===vp.genomicState.locusIndex&&list.push(vp)})}),list},igv.Viewport.viewportWithID=function(id){var result=void 0;return _.each(igv.browser.trackViews,function(tv){void 0===result&&_.each(tv.viewports,function(vp){id===vp.id&&(result=vp)})}),result},Tile=function(chr,tileStart,tileEnd,bpPerPixel,image){this.chr=chr,this.startBP=tileStart,this.endBP=tileEnd,this.bpPerPixel=bpPerPixel,this.image=image},Tile.prototype.containsRange=function(chr,start,end,bpPerPixel){return this.bpPerPixel===bpPerPixel&&start>=this.startBP&&end<=this.endBP&&chr===this.chr},Tile.prototype.overlapsRange=function(chr,start,end){return this.chr===chr&&end>=this.startBP&&start<=this.endBP},igv.Viewport.prototype.redrawTile=function(features){var buffer;this.tile&&(buffer=document.createElement("canvas"),buffer.width=this.tile.image.width,buffer.height=this.tile.image.height,this.trackView.track.draw({features:features,context:buffer.getContext("2d"),bpStart:this.tile.startBP,bpPerPixel:this.tile.bpPerPixel,pixelWidth:buffer.width,pixelHeight:buffer.height}),this.tile=new Tile(this.tile.chr,this.tile.startBP,this.tile.endBP,this.tile.bpPerPixel,buffer),this.paintImage(this.genomicState.referenceFrame))},igv}(igv||{}),igv=function(igv){return igv.WindowSizePanel=function($parent){this.$content=$('<div class="igv-windowsizepanel-content-div">'),$parent.append(this.$content)},igv.WindowSizePanel.prototype.show=function(){this.$content.show()},igv.WindowSizePanel.prototype.hide=function(){this.$content.hide()},igv.WindowSizePanel.prototype.updateWithGenomicState=function(genomicState){var viewportWidth,referenceFrame,length;1===genomicState.locusCount&&"all"!==genomicState.locusSearchString.toLowerCase()?this.show():this.hide(),viewportWidth=igv.Viewport.viewportWidthAtLocusIndex(genomicState.locusIndex),referenceFrame=genomicState.referenceFrame,length=viewportWidth*referenceFrame.bpPerPixel,this.$content.text(igv.prettyBasePairNumber(Math.round(length)))},igv}(igv||{});return igv});
+//# sourceMappingURL=igv.min.map
\ No newline at end of file
diff --git a/kbase-extension/static/ext_packages/igv/igv.js/img/cursor_logo.png b/kbase-extension/static/ext_packages/igv/igv.js/img/cursor_logo.png
new file mode 100644
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diff --git a/kbase-extension/static/ext_packages/igv/igv.js/img/cursor_logo.svg b/kbase-extension/static/ext_packages/igv/igv.js/img/cursor_logo.svg
new file mode 100644
index 0000000000..4bc36909ea
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/igv.js/img/cursor_logo.svg
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+    <!-- Generator: Sketch 3.1.1 (8761) - http://www.bohemiancoding.com/sketch -->
+    <title>dugla_cursor_logo 2</title>
+    <desc>Created with Sketch.</desc>
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+            <g id="letters" transform="translate(43.000000, 0.000000)" fill="#0374B2" sketch:type="MSShapeGroup">
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+                <path d="M41.9,52.7 C35.1,52.7 29.7,48.1174573 29.7,41.1440228 L29.7,0.2 L36.2,0.2 L36.2,40.9447818 C36.2,44.7303605 38.4,47.0216319 41.9,47.0216319 C45.4,47.0216319 47.7,44.7303605 47.7,40.9447818 L47.7,19.4267552 L54.1,19.4267552 L54.1,41.1440228 C54,48.1174573 48.7,52.7 41.9,52.7 L41.9,52.7 Z" id="Shape"></path>
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+            <rect id="Rectangle-path" stroke="#0374B2" stroke-width="2" fill="#0374B2" sketch:type="MSShapeGroup" x="9" y="16" width="24" height="38"></rect>
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+</svg>
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diff --git a/kbase-extension/static/ext_packages/igv/igv.js/img/igv-logo.svg b/kbase-extension/static/ext_packages/igv/igv.js/img/igv-logo.svg
new file mode 100644
index 0000000000..2c325c3a76
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/igv.js/img/igv-logo.svg
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+<?xml version="1.0" encoding="UTF-8"?>
+<svg width="690px" height="324px" viewBox="0 0 690 324" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
+    <!-- Generator: Sketch 40.3 (33839) - http://www.bohemiancoding.com/sketch -->
+    <title>IGV</title>
+    <desc>Created with Sketch.</desc>
+    <defs></defs>
+    <g id="Page-1" stroke="none" stroke-width="1" fill="none" fill-rule="evenodd">
+        <g id="IGV" fill="#666666">
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diff --git a/kbase-extension/static/ext_packages/igv/igv.js/package.json b/kbase-extension/static/ext_packages/igv/igv.js/package.json
new file mode 100644
index 0000000000..67fcfea9a2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/igv.js/package.json
@@ -0,0 +1,54 @@
+{
+  "_from": "igv.js",
+  "_id": "igv.js@0.1.0",
+  "_inBundle": false,
+  "_integrity": "sha1-tecNMPKHjA2d6eIYhN3xCYJmEv0=",
+  "_location": "/igv.js",
+  "_phantomChildren": {},
+  "_requested": {
+    "type": "tag",
+    "registry": true,
+    "raw": "igv.js",
+    "name": "igv.js",
+    "escapedName": "igv.js",
+    "rawSpec": "",
+    "saveSpec": null,
+    "fetchSpec": "latest"
+  },
+  "_requiredBy": [
+    "#USER",
+    "/"
+  ],
+  "_resolved": "https://registry.npmjs.org/igv.js/-/igv.js-0.1.0.tgz",
+  "_shasum": "b5e70d30f2878c0d9de9e21884ddf109826612fd",
+  "_spec": "igv.js",
+  "_where": "/Users/jim/DMZ/narrative-mar-2018",
+  "author": {
+    "name": "Jim Robinson",
+    "email": "igv-team@broadinstitute.org",
+    "url": "https://igv.org"
+  },
+  "bugs": {
+    "url": "https://github.com/igvteam/igv.js-npm/issues"
+  },
+  "bundleDependencies": false,
+  "deprecated": false,
+  "description": "Genomics visualization package",
+  "homepage": "https://github.com/igvteam/igv.js-npm#readme",
+  "keywords": [
+    "IGV",
+    "genomics",
+    "visualization"
+  ],
+  "license": "MIT",
+  "main": "igv.min.js",
+  "name": "igv.js",
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/igvteam/igv.js-npm.git"
+  },
+  "scripts": {
+    "test": "echo \"Error: no tests defined\" && exit 1"
+  },
+  "version": "0.1.0"
+}
diff --git a/kbase-extension/static/ext_packages/igv/next-tick/.lint b/kbase-extension/static/ext_packages/igv/next-tick/.lint
new file mode 100644
index 0000000000..7f0f7f0c76
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/next-tick/.lint
@@ -0,0 +1,14 @@
+@root
+
+module
+es5
+
+indent 2
+maxlen 100
+tabs
+
+ass
+bitwise
+nomen
+plusplus
+predef+ process, setImmediate, setTimeout, clearTimeout, document, MutationObserver, WebKitMutationObserver
diff --git a/kbase-extension/static/ext_packages/igv/next-tick/.npmignore b/kbase-extension/static/ext_packages/igv/next-tick/.npmignore
new file mode 100644
index 0000000000..155e41f691
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/next-tick/.npmignore
@@ -0,0 +1,4 @@
+.DS_Store
+/node_modules
+/npm-debug.log
+/.lintcache
diff --git a/kbase-extension/static/ext_packages/igv/next-tick/.travis.yml b/kbase-extension/static/ext_packages/igv/next-tick/.travis.yml
new file mode 100644
index 0000000000..d867be5fa2
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/next-tick/.travis.yml
@@ -0,0 +1,16 @@
+sudo: false # http://docs.travis-ci.com/user/workers/container-based-infrastructure/
+language: node_js
+node_js:
+  - 0.12
+  - 4
+  - 5
+  - 6
+
+before_install:
+  - mkdir node_modules; ln -s ../ node_modules/next-tick
+
+notifications:
+  email:
+    - medikoo+next-tick@medikoo.com
+
+script: "npm test && npm run lint"
diff --git a/kbase-extension/static/ext_packages/igv/next-tick/CHANGES b/kbase-extension/static/ext_packages/igv/next-tick/CHANGES
new file mode 100644
index 0000000000..6f59c8872c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/next-tick/CHANGES
@@ -0,0 +1,24 @@
+v1.0.0  --  2016.06.09
+* In case MutationObserver based solution ensure all callbacks are propagated
+  even if any on the way crashes (fixes #3)
+* Support older engines (as IE8) which see typeof setTimeout as 'object'
+* Fix spelling of LICENSE
+* Configure lint scripts
+
+v0.2.2  --  2014.04.18
+- Do not rely on es5-ext's valid-callable. Replace it with simple internal function
+- In MutationObserver fallback rely on text node instead of attribute and assure
+  mutation event is invoked by real change of data
+
+v0.2.1  --  2014.02.24
+- Fix case in import path
+
+v0.2.0  --  2014.02.24
+- Assure microtask resultion if MutationObserver is available (thanks @Raynos) #1
+- Unify validation of callback. TypeError is throw for any non callable input
+- Move main module from `lib` to root directory
+- Improve documentation
+- Remove Makefile (it's environment agnostic pacakge)
+
+v0.1.0  --  2012.08.29
+Initial
diff --git a/kbase-extension/static/ext_packages/igv/next-tick/LICENSE b/kbase-extension/static/ext_packages/igv/next-tick/LICENSE
new file mode 100644
index 0000000000..fa5fffddfd
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/next-tick/LICENSE
@@ -0,0 +1,21 @@
+The MIT License
+
+Copyright (C) 2012-2016 Mariusz Nowak 
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
diff --git a/kbase-extension/static/ext_packages/igv/next-tick/README.md b/kbase-extension/static/ext_packages/igv/next-tick/README.md
new file mode 100644
index 0000000000..5e73a8b78e
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/next-tick/README.md
@@ -0,0 +1,24 @@
+# next-tick
+## Environment agnostic nextTick polyfill
+
+To be used in environment agnostic modules that need nextTick functionality.
+
+- When run in Node.js `process.nextTick` is used
+- In modern browsers microtask resolution is guaranteed by `MutationObserver`
+- In other engines `setImmediate` or `setTimeout(fn, 0)` is used as fallback.
+- If none of the above is supported module resolves to `null`
+
+## Installation
+### NPM
+
+In your project path:
+
+	$ npm install next-tick
+
+#### Browser
+
+You can easily bundle `next-tick` for browser with any CJS bundler, e.g. [modules-webmake](https://github.com/medikoo/modules-webmake)
+
+## Tests [![Build Status](https://api.travis-ci.org/medikoo/next-tick.png?branch=master)](https://travis-ci.org/medikoo/next-tick)
+
+	$ npm test
diff --git a/kbase-extension/static/ext_packages/igv/next-tick/index.js b/kbase-extension/static/ext_packages/igv/next-tick/index.js
new file mode 100644
index 0000000000..ec2138ed7a
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/next-tick/index.js
@@ -0,0 +1,71 @@
+'use strict';
+
+var callable, byObserver;
+
+callable = function (fn) {
+	if (typeof fn !== 'function') throw new TypeError(fn + " is not a function");
+	return fn;
+};
+
+byObserver = function (Observer) {
+	var node = document.createTextNode(''), queue, currentQueue, i = 0;
+	new Observer(function () {
+		var callback;
+		if (!queue) {
+			if (!currentQueue) return;
+			queue = currentQueue;
+		} else if (currentQueue) {
+			queue = currentQueue.concat(queue);
+		}
+		currentQueue = queue;
+		queue = null;
+		if (typeof currentQueue === 'function') {
+			callback = currentQueue;
+			currentQueue = null;
+			callback();
+			return;
+		}
+		node.data = (i = ++i % 2); // Invoke other batch, to handle leftover callbacks in case of crash
+		while (currentQueue) {
+			callback = currentQueue.shift();
+			if (!currentQueue.length) currentQueue = null;
+			callback();
+		}
+	}).observe(node, { characterData: true });
+	return function (fn) {
+		callable(fn);
+		if (queue) {
+			if (typeof queue === 'function') queue = [queue, fn];
+			else queue.push(fn);
+			return;
+		}
+		queue = fn;
+		node.data = (i = ++i % 2);
+	};
+};
+
+module.exports = (function () {
+	// Node.js
+	if ((typeof process === 'object') && process && (typeof process.nextTick === 'function')) {
+		return process.nextTick;
+	}
+
+	// MutationObserver
+	if ((typeof document === 'object') && document) {
+		if (typeof MutationObserver === 'function') return byObserver(MutationObserver);
+		if (typeof WebKitMutationObserver === 'function') return byObserver(WebKitMutationObserver);
+	}
+
+	// W3C Draft
+	// http://dvcs.w3.org/hg/webperf/raw-file/tip/specs/setImmediate/Overview.html
+	if (typeof setImmediate === 'function') {
+		return function (cb) { setImmediate(callable(cb)); };
+	}
+
+	// Wide available standard
+	if ((typeof setTimeout === 'function') || (typeof setTimeout === 'object')) {
+		return function (cb) { setTimeout(callable(cb), 0); };
+	}
+
+	return null;
+}());
diff --git a/kbase-extension/static/ext_packages/igv/next-tick/package.json b/kbase-extension/static/ext_packages/igv/next-tick/package.json
new file mode 100644
index 0000000000..1ec7076cd8
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/next-tick/package.json
@@ -0,0 +1,63 @@
+{
+  "_args": [
+    [
+      "next-tick@1.0.0",
+      "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components"
+    ]
+  ],
+  "_from": "next-tick@1.0.0",
+  "_id": "next-tick@1.0.0",
+  "_inBundle": false,
+  "_integrity": "sha1-yobR/ogoFpsBICCOPchCS524NCw=",
+  "_location": "/next-tick",
+  "_phantomChildren": {},
+  "_requested": {
+    "type": "version",
+    "registry": true,
+    "raw": "next-tick@1.0.0",
+    "name": "next-tick",
+    "escapedName": "next-tick",
+    "rawSpec": "1.0.0",
+    "saveSpec": null,
+    "fetchSpec": "1.0.0"
+  },
+  "_requiredBy": [
+    "/es5-ext"
+  ],
+  "_resolved": "https://registry.npmjs.org/next-tick/-/next-tick-1.0.0.tgz",
+  "_spec": "1.0.0",
+  "_where": "/Users/jim/DMZ/narrative-mar-2018/kbase-extension/static/ext_components",
+  "author": {
+    "name": "Mariusz Nowak",
+    "email": "medyk@medikoo.com",
+    "url": "http://www.medikoo.com/"
+  },
+  "bugs": {
+    "url": "https://github.com/medikoo/next-tick/issues"
+  },
+  "description": "Environment agnostic nextTick polyfill",
+  "devDependencies": {
+    "tad": "^0.2.4",
+    "xlint": "^0.2.2",
+    "xlint-jslint-medikoo": "^0.1.4"
+  },
+  "homepage": "https://github.com/medikoo/next-tick#readme",
+  "keywords": [
+    "nexttick",
+    "setImmediate",
+    "setTimeout",
+    "async"
+  ],
+  "license": "MIT",
+  "name": "next-tick",
+  "repository": {
+    "type": "git",
+    "url": "git://github.com/medikoo/next-tick.git"
+  },
+  "scripts": {
+    "lint": "node node_modules/xlint/bin/xlint --linter=node_modules/xlint-jslint-medikoo/index.js --no-cache --no-stream",
+    "lint-console": "node node_modules/xlint/bin/xlint --linter=node_modules/xlint-jslint-medikoo/index.js --watch",
+    "test": "node node_modules/tad/bin/tad"
+  },
+  "version": "1.0.0"
+}
diff --git a/kbase-extension/static/ext_packages/igv/next-tick/test/index.js b/kbase-extension/static/ext_packages/igv/next-tick/test/index.js
new file mode 100644
index 0000000000..6b22cf484c
--- /dev/null
+++ b/kbase-extension/static/ext_packages/igv/next-tick/test/index.js
@@ -0,0 +1,22 @@
+'use strict';
+
+module.exports = function (t, a, d) {
+	var invoked;
+
+	a(t(function () {
+		a(arguments.length, 0, "Arguments");
+		invoked = true;
+	}), undefined, "Return");
+	a(invoked, undefined, "Is not run immediately");
+	setTimeout(function () {
+		a(invoked, true, "Run in next tick");
+		invoked = [];
+		t(function () { invoked.push(0); });
+		t(function () { invoked.push(1); });
+		t(function () { invoked.push(2); });
+		setTimeout(function () {
+			a.deep(invoked, [0, 1, 2], "Serial");
+			d();
+		}, 10);
+	}, 10);
+};
diff --git a/kbase-extension/static/kbase/js/widgets/function_output/kbaseGenomeAnnotation.js b/kbase-extension/static/kbase/js/widgets/function_output/kbaseGenomeAnnotation.js
index 470585e36b..b77d7ed745 100644
--- a/kbase-extension/static/kbase/js/widgets/function_output/kbaseGenomeAnnotation.js
+++ b/kbase-extension/static/kbase/js/widgets/function_output/kbaseGenomeAnnotation.js
@@ -40,7 +40,7 @@ define (
         'GenomeSearchUtil-client-api',
 
         'igv',
-        'css!ext_components/node_modules/igv.js/igv.css',
+        'css!ext_packages/igv/igv.js/igv.css',
 
   ], function(
     KBWidget,
diff --git a/kbase-extension/static/narrative_paths.js b/kbase-extension/static/narrative_paths.js
index 9f2cbb0954..1dd1e844a5 100644
--- a/kbase-extension/static/narrative_paths.js
+++ b/kbase-extension/static/narrative_paths.js
@@ -35,7 +35,7 @@ require.config({
 
         // not under bower control
         colorbrewer: 'ext_packages/colorbrewer/colorbrewer.min',
-        'igv' : 'ext_components/node_modules/igv.js/igv.min',
+        'igv' : 'ext_packages/igv/igv.js/igv.min',
         // copied from the cdn
         'google-code-prettify': 'ext_packages/google-code-prettify/1.2.0/',
         jqueryCookie: 'ext_packages/jquery-extensions/js/jquery.cookie.min',
diff --git a/package.json b/package.json
index e4f3fe91fc..b895deb58e 100644
--- a/package.json
+++ b/package.json
@@ -37,8 +37,7 @@
   "scripts": {
     "bower": "bower install",
     "test": "grunt test",
-    "build": "grunt build",
-    "preinstall": "npm install --prefix kbase-extension/static/ext_components/ igv.js"
+    "build": "grunt build"
   },
   "dependencies": {
     "karma-es6-shim": "^1.0.0"