R/qtl2: QTL mapping with high-dimensional data and multiple-parent populations

This repository contains the source for the manuscript

Broman KW, Gatti DM, Simecek P, Furlotte NA, Prins P, Sen Ś, Yandell BS, Churchill GA (2019) R/qtl2: software for mapping quantitative trait loci with high-dimensional data and multi-parent populations. Genetics 211:495-502

R/qtl2 is a re-implementation of the QTL mapping software R/qtl.

• rqtl2_paper.tex - primary LaTeX source
• rqtl2_paper.bib - BibTeX references
• R/fig1.R - code to create Figure 1
• R/fig2.R - code to create Figure 2
• cfGatti2014/ - comparison to results using genotypes probabilities used in from Gatti et al (2014)
• GnanResults - Data and analysis files for Gnan et al. (2014) Genetics 198:1751-1758 doi:10.1534/genetics.114.170746

Current PDF of the paper at https://www.biostat.wisc.edu/~kbroman/publications/rqtl2_paper.pdf

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License

This manuscript is licensed under CC BY.