Treatment of the X chromosome in mapping multiple quantitative trait loci

Repository with the source, simulations, and analyses for

Tran Q, Broman KW (2021) Treatment of the X chromosome in mapping multiple quantitative trait loci. G3 (Bethesda) 11:jkab005

• Makefile - GNU Make file for compiling the paper
• qtlX.tex - the LaTeX source for the manuscript
• qtlX.bib - BibTeX file with bibliography records
• genetics.bst - BibTeX style file for Genetics
• R/ - code to create the figures
• Figs/ - the figures, as eps files
• BCNullSims/ - null simulations for a backcross, to get the penalties used in the simulations of power
• Simulations/ - simulations to assess power
• AppNullSims/ - null simulations for the B6×BTBR eQTL application
• Application/ - analyses for the B6×BTBR eQTL application