Materials for a 1-day workshop on R/qtl and R/qtl2
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ReadMe.md

R/qtl Workshop

This repository contains materials for a one-day workshop on R/qtl and R/qtl2, to be held at the Complex Trait Community meeting in Memphis, TN, on 13 June 2017.

Preparations

Participants will need to bring their own laptop computer. Mac users will need to be running a very recent version of Mac OS X: El Capitan (10.11) or Sierra (10.12). To determine your installed version, click the  in the upper-left and select "About this Mac".

  • Install the latest version of R, 3.4.0

  • Install the latest version of RStudio, 1.0.143

  • Open RStudio and install the latest version of R/qtl and R/qtlcharts by typing, at the command prompt (>),

    install.packages(c("qtl", "qtlcharts"))
    
  • Install R/qtl2 by typing

    install.packages("qtl2", repos="http://rqtl.org/qtl2cran")
    

Schedule

The workshop will take place on Tuesday, 13 June, 9am-3pm, in Room 227 of the FedEx Institute. In the morning, we'll cover R/qtl and the foundations of QTL mapping. In the afternoon, we'll cover R/qtl2.

  • 8:00-9:00 Light breakfast, 2nd floor FedEx Institute
  • 9:00-noon R/qtl (break 10:20 - 10:40)
  • noon-1:00 Light lunch, 2nd floor FedEx Institute
  • 1:00-3:00 R/qtl2 (break 1:50 - 2:10)

Course materials

We'll switch back-and-forth between slides and follow-along software demonstration.


License

To the extent possible under law, Karl Broman has waived all copyright and related or neighboring rights to “R/qtl workshop”. This work is published from the United States.
CC0

Code is licensed under the MIT license. (More information here.)