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mainstuff: js presentation.html Figs/riself.png Figs/geno_pheno.png Figs/perm_hist.png Figs/slod_mlod.png Figs/forwsel1.png Figs/slod_multiqtl.png data
presentation.html: index.html js css/kbroman_talk.css css/kbroman_presentation.css
Perl/create_presentation.pl
data: Data/pheno.json Data/onetime.json Data/onetime_random.json Data/stepwise.json Data/all_lod.json
R/spal.RData: R/prep_rep1_data.R RawData/rep1_rev.csv
cd R;R CMD BATCH prep_rep1_data.R
R/out.RData: R/prep_rep1_data.R RawData/rep1_rev.csv
cd R;R CMD BATCH prep_rep1_data.R
Data/pheno.json: R/spal.RData R/phe2json.R
cd R;R CMD BATCH phe2json.R
Data/onetime.json: R/spal.RData R/out.RData R/grab_lod_one_time.R
cd R;R CMD BATCH grab_lod_one_time.R
Data/onetime_random.json: R/spal.RData R/out.RData R/grab_lod_one_time_random.R
cd R;R CMD BATCH grab_lod_one_time_random.R
Data/all_lod.json: R/spal.RData R/out.RData R/grab_all_lod.R
cd R;R CMD BATCH grab_all_lod.R
Data/stepwise.json: R/spal.RData R/Analysis/outsq.RData R/grab_stepwise.R R/Analysis/outsq2.RData
cd R;R CMD BATCH grab_stepwise.R
js: JS/pheno.js JS/lod_onetime.js JS/lod_onetime_random.js JS/lod_alltimes.js JS/stepwise.js JS/draw_stepwise.js JS/draw_stepwise2.js
JS/pheno.js: Coffee/pheno.coffee
coffee -co JS Coffee/pheno.coffee
JS/lod_onetime.js: Coffee/lod_onetime.coffee Data/onetime.json
coffee -co JS Coffee/lod_onetime.coffee
JS/lod_onetime_random.js: Coffee/lod_onetime_random.coffee Data/onetime_random.json
coffee -co JS Coffee/lod_onetime_random.coffee
JS/lod_alltimes.js: Coffee/lod_alltimes.coffee
coffee -co JS Coffee/lod_alltimes.coffee
JS/stepwise.js: Coffee/stepwise.coffee
coffee -bco JS Coffee/stepwise.coffee
JS/draw_stepwise.js: Coffee/draw_stepwise.coffee
coffee -co JS Coffee/draw_stepwise.coffee
JS/draw_stepwise2.js: Coffee/draw_stepwise2.coffee
coffee -co JS Coffee/draw_stepwise2.coffee
Figs/riself.png: R/riself_fig.R R/meiosis_func.R R/colors.R
cd R;R CMD BATCH --no-save riself_fig.R
Figs/geno_pheno.png: R/geno_pheno_fig.R R/colors.R R/spal.RData R/my_geno_image.R
cd R;R CMD BATCH --no-save geno_pheno_fig.R
Figs/perm_hist.png: R/perm_hist.R R/colors.R R/spal.RData
cd R;R CMD BATCH --no-save perm_hist.R
Figs/slod_mlod.png: R/slod_mlod_fig.R R/colors.R R/my_plot_scanone.R
cd R;R CMD BATCH --no-save slod_mlod_fig.R
Figs/forwsel1.png: R/forwsel.R R/colors.R R/my_plot_scanone.R
cd R;R CMD BATCH --no-save forwsel.R
Figs/slod_multiqtl.png: R/slod_multiqtl.R R/colors.R R/my_plot_scanone.R
cd R;R CMD BATCH --no-save slod_multiqtl.R
webhtml:
scp *.html broman-7:public_html/presentations/FunQTL/
webcss:
scp CSS/*.css broman-7:public_html/presentations/FunQTL/CSS/
webcode:
scp JS/*.js broman-7:public_html/presentations/FunQTL/JS/
scp Coffee/*.coffee broman-7:public_html/presentations/FunQTL/Coffee/
webdata:
scp Data/*.json broman-7:public_html/presentations/FunQTL/Data/
webfig:
scp Figs/*.jpg Figs/*.png broman-7:public_html/presentations/FunQTL/Figs/
web: webhtml webcss webcode webfig webdata
all: js web presentation.html
tar: mainstuff
cd ..;tar czvf FunQTL.tgz FunQTL/*.html FunQTL/Coffee/*.coffee FunQTL/JS/*.js FunQTL/Figs/* FunQTL/Data/*.json FunQTL/CSS/*.css FunQTL/Movie/