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Slides for a talk at the Jackson Laboratory on 17 Oct 2018

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Cleaning genotype data for diversity outbred mice

Slides for a talk at the Jackson Laboratory in Bar Harbor, Maine, on 17 Oct 2018. I gave an earlier version of this at the Complex Trait Community meeting in Glasgow in June, 2018.

Rendered slides: https://kbroman.org/Talk_JAX2018 (or as pdf)

Note that the primary data files are not provided, and you won't be able to build the slides without them.

A version of this talk is available as a video on youtube.

Also see the related paper:

Broman KW, Gatti DM, Svenson KL, Sen Ś, Churchill GA (2019) Cleaning genotype data from Diversity Outbred mice. G3 (Bethesda) 9:1571-1579 PubMed pdf supporting info GitHub doi

Broman KW, Gatti DM, Svenson KL, Sen Ś, Churchill GA (2019) Cleaning genotype data from Diversity Outbred mice. G3 (Bethesda) 9:1571-1579 doi:10.1534/g3.119.400165

And here's the related manuscript on the microbiome sample mix-ups and mixtures:

Lobo AK, Traeger LL, Keller MP, Attie AD, Rey FE, Broman KW (2019) Identification of sample mix-ups and mixtures in microbiome data in Diversity Outbred mice. bioRxiv doi:10.1101/529040 pdf GitHub R/mbmixture software doi


To the extent possible under law, Karl Broman has waived all copyright and related or neighboring rights to “Cleaning genotype data for diversity outbred mice”. This work is published from the United States.
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