Simple port of pylmm: linear mixed models for GWAS
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README.md

R/lmmlite - R port of pylmm

Build Status

Karl Broman (following the code in Nick Furlotte's pylmm)

In order to better understand pylmm, for linear mixed models for genome-wide association studies (GWAS), I wrote an R version of the algorithm.


Vignettes


Installation

You can install R/lmmlite from GitHub.

You first need to install the devtools and RcppEigen packages. (Rcpp will also be installed.)

install.packages(c("devtools", "RcppEigen"))

Then use devtools::install_github() to install R/lmmlite.

library(devtools)
install_github("kbroman/lmmlite")

License

R/lmmlite is released under the GNU Affero GPL.

The code was developed following study of Nick Furlotte's pylmm code.