Permalink
Find file
e2df99d Mar 10, 2013
61 lines (41 sloc) 2.2 KB
pdf: phyloqtl.pdf phyloqtl_supp.pdf
all: pdf phyloqtl_combined.pdf phyloqtl_source.tgz
phyloqtl_combined.pdf: phyloqtl.pdf phyloqtl_supp.pdf
combinepdf -f phyloqtl.pdf phyloqtl_supp.pdf phyloqtl_combined.pdf
phyloqtl.dvi: phyloqtl.tex phyloqtl.bib genetics.bst Makefile Figs/fig1.eps Figs/fig2.eps Figs/fig3.eps Figs/fig4.eps Figs/fig6.eps
latex phyloqtl
bibtex phyloqtl
latex phyloqtl
latex phyloqtl
latex phyloqtl
phyloqtl.pdf: phyloqtl.dvi
dvipdf phyloqtl.dvi phyloqtl.pdf
phyloqtl_supp.pdf: phyloqtl_supp.tex genetics.bst Makefile SuppFigs/power_allpart.pdf SuppFigs/supp_tree_fig.pdf
xelatex phyloqtl_supp
xelatex phyloqtl_supp
Figs/fig1.pdf: Figs/fig1.tex Figs/phylotree.pdf
cd Figs; pdflatex fig1.pdf
Figs/fig1.eps: Figs/fig1.pdf
cd Figs; pdftops -eps fig1.pdf
Figs/fig2.eps: R/six_taxa_tree.R
cd R; R CMD BATCH six_taxa_tree.R six_taxa_tree.Rout
Figs/fig4.eps: R/power_summaries.RData R/power_figs.R
cd R; R CMD BATCH power_figs.R power_figs.Rout
Figs/fig6.eps: R/app_results.RData R/app_fig.R
cd R; R CMD BATCH app_fig.R app_fig.Rout
Figs/phylotree.pdf: R/treefig.R
cd R; R CMD BATCH treefig.R treefig.Rout
Figs/fig3.eps: R/compare2naive.R R/forfig3.RData
cd R; R CMD BATCH compare2naive.R compare2naive.Rout
R/forfig3.RData: R/compare2naive_calcroc.R R/nullsims_all.RData R/compare2naive_phyloqtl_rev.RData R/compare2naiveB_ind.RData
cd R; R CMD BATCH compare2naive_calcroc.R compare2naive_calcroc.Rout
SuppFigs/power_allpart.pdf: R/supp_sim_figs.R R/power_summaries_rev.RData
cd R; R CMD BATCH supp_sim_figs.R supp_sim_figs.Rout
SuppFigs/supp_tree_fig.pdf: R/supp_treefig.R
cd R; R CMD BATCH supp_treefig.R supp_treefig.Rout
clean:
\rm -f *.aux *.bbl *.blg *.log *.bak *~ *.Rout */*~ */*.Rout */*.aux */*.log
cleanall:
\rm -f *.aux *.bbl *.blg *.log *.pdf *.bak *~ *.Rout */*~ */*.Rout Figs/*.eps Figs/*.pdf SuppFigs/*.pdf */*.aux */*.log
phyloqtl_source.tgz: phyloqtl.tex phyloqtl_supp.tex genetics.bst phyloqtl.bib Figs/fig1.eps Figs/fig2.eps Figs/fig3.eps Figs/fig4.eps Figs/fig5.eps Figs/fig6.eps Figs/fig1.pdf SuppFigs/supp_tree_fig.pdf SuppFigs/power_allpart.pdf
tar czvf phyloqtl_source.tgz phyloqtl.tex phyloqtl_supp.tex genetics.bst phyloqtl.bib Figs/fig?.eps Figs/fig?.pdf SuppFigs/*.pdf