A Shiny app for visualizing PSI values of alternative spilcing events from VAST-TOOLS
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README.md

psiplotter-app

A Shiny app for visualizing percent spliced-in (PSI) values of alternatively-spliced exons that were computed by VAST-TOOLS.

screenshot

New A v0.3.0 beta version that uses plotly for creating interactive plots is available under the plotly branch or by running:

install.packages(c("devtools", "shiny", "plotly"))
shiny::runGitHub('psiplotter-app', 'kcha', ref = "plotly")

Usage

To run on your local machine, execute the following code in your R console to install the required packages:

install.packages(c("devtools", "shiny"))
devtools::install_github('kcha/psiplot')

Then, to start the application, execute the following command:

shiny::runGitHub('psiplotter-app', 'kcha')

Alternatively, you can try out the app here: http://kcha.shinyapps.io/psiplotter-app

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