Interpretable protein-protein interaction prediction based on sparse gated sequence encoder

This is the pytorch implementation of the InterpretablePIP.

Requirements

• PyTorch
• python3.6
• sklearn
• scipy

Example to run demo.

python example.py

If you find this code useful, please cite us as:

@inproceedings{kishan2020icpr,
  author    = {KC, Kishan and Cui, Feng and Haake, Anne and Li, Rui},
  title     = {Interpretable Structured Learning with Sparse Gated Sequence Encoder for Protein-Protein Interaction Prediction},
  booktitle = {Proceedings of the 25th International Conference on Pattern Recognition, {ICPR}},
  year      = {2020}
}