Collecting msprime Using cached msprime-1.2.0.tar.gz (862 kB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Requirement already satisfied: numpy in /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/lib/python3.11/site-packages (from msprime) (1.26.0) Collecting newick>=1.3.0 (from msprime) Using cached newick-1.9.0-py2.py3-none-any.whl (15 kB) Collecting tskit>=0.4.0 (from msprime) Using cached tskit-0.5.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) Collecting demes>=0.2 (from msprime) Using cached demes-0.2.3-py3-none-any.whl (40 kB) Requirement already satisfied: attrs>=20.3.0 in /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/lib/python3.11/site-packages (from demes>=0.2->msprime) (23.1.0) Collecting ruamel.yaml>=0.15.78 (from demes>=0.2->msprime) Using cached ruamel.yaml-0.18.5-py3-none-any.whl.metadata (23 kB) Requirement already satisfied: jsonschema>=3.0.0 in /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/lib/python3.11/site-packages (from tskit>=0.4.0->msprime) (4.19.2) Collecting svgwrite>=1.1.10 (from tskit>=0.4.0->msprime) Using cached svgwrite-1.4.3-py3-none-any.whl (67 kB) Requirement already satisfied: jsonschema-specifications>=2023.03.6 in /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/lib/python3.11/site-packages (from jsonschema>=3.0.0->tskit>=0.4.0->msprime) (2023.7.1) Requirement already satisfied: referencing>=0.28.4 in /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/lib/python3.11/site-packages (from jsonschema>=3.0.0->tskit>=0.4.0->msprime) (0.30.2) Requirement already satisfied: rpds-py>=0.7.1 in /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/lib/python3.11/site-packages (from jsonschema>=3.0.0->tskit>=0.4.0->msprime) (0.10.6) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml>=0.15.78->demes>=0.2->msprime) Using cached ruamel.yaml.clib-0.2.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (2.2 kB) Using cached tskit-0.5.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.2 MB) Using cached ruamel.yaml-0.18.5-py3-none-any.whl (116 kB) Using cached ruamel.yaml.clib-0.2.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (544 kB) Building wheels for collected packages: msprime Building wheel for msprime (pyproject.toml) ... error error: subprocess-exited-with-error × Building wheel for msprime (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [53 lines of output] :27: UserWarning: Error occured getting GSL path config: [Errno 2] No such file or directory: 'gsl-config' running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/msprime copying msprime/intervals.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/_version.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/species_trees.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/core.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/provenance.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/mutations.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/ancestry.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/likelihood.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/demography.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/pedigrees.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/cli.py -> build/lib.linux-x86_64-cpython-311/msprime copying msprime/__init__.py -> build/lib.linux-x86_64-cpython-311/msprime running egg_info writing msprime.egg-info/PKG-INFO writing dependency_links to msprime.egg-info/dependency_links.txt writing entry points to msprime.egg-info/entry_points.txt writing requirements to msprime.egg-info/requires.txt writing top-level names to msprime.egg-info/top_level.txt ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any reading manifest file 'msprime.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'msprime.egg-info/SOURCES.txt' copying msprime/_msprimemodule.c -> build/lib.linux-x86_64-cpython-311/msprime running build_ext building 'msprime._msprime' extension creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/git-submodules creating build/temp.linux-x86_64-cpython-311/git-submodules/tskit creating build/temp.linux-x86_64-cpython-311/git-submodules/tskit/c creating build/temp.linux-x86_64-cpython-311/git-submodules/tskit/c/subprojects creating build/temp.linux-x86_64-cpython-311/git-submodules/tskit/c/subprojects/kastore creating build/temp.linux-x86_64-cpython-311/git-submodules/tskit/c/tskit creating build/temp.linux-x86_64-cpython-311/lib creating build/temp.linux-x86_64-cpython-311/msprime gcc -pthread -B /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/compiler_compat -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -Ilwt_interface -Ilib -Igit-submodules/tskit/c -Igit-submodules/tskit/c/tskit -Igit-submodules/tskit/c/subprojects/kastore -I/tmp/pip-build-env-6vwkq8u5/overlay/lib/python3.11/site-packages/numpy/core/include -I/home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include/python3.11 -c git-submodules/tskit/c/subprojects/kastore/kastore.c -o build/temp.linux-x86_64-cpython-311/git-submodules/tskit/c/subprojects/kastore/kastore.o -std=c99 gcc -pthread -B /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/compiler_compat -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -Ilwt_interface -Ilib -Igit-submodules/tskit/c -Igit-submodules/tskit/c/tskit -Igit-submodules/tskit/c/subprojects/kastore -I/tmp/pip-build-env-6vwkq8u5/overlay/lib/python3.11/site-packages/numpy/core/include -I/home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include/python3.11 -c git-submodules/tskit/c/tskit/core.c -o build/temp.linux-x86_64-cpython-311/git-submodules/tskit/c/tskit/core.o -std=c99 gcc -pthread -B /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/compiler_compat -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -Ilwt_interface -Ilib -Igit-submodules/tskit/c -Igit-submodules/tskit/c/tskit -Igit-submodules/tskit/c/subprojects/kastore -I/tmp/pip-build-env-6vwkq8u5/overlay/lib/python3.11/site-packages/numpy/core/include -I/home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include/python3.11 -c git-submodules/tskit/c/tskit/tables.c -o build/temp.linux-x86_64-cpython-311/git-submodules/tskit/c/tskit/tables.o -std=c99 gcc -pthread -B /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/compiler_compat -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -Ilwt_interface -Ilib -Igit-submodules/tskit/c -Igit-submodules/tskit/c/tskit -Igit-submodules/tskit/c/subprojects/kastore -I/tmp/pip-build-env-6vwkq8u5/overlay/lib/python3.11/site-packages/numpy/core/include -I/home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include/python3.11 -c git-submodules/tskit/c/tskit/trees.c -o build/temp.linux-x86_64-cpython-311/git-submodules/tskit/c/tskit/trees.o -std=c99 gcc -pthread -B /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/compiler_compat -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -Ilwt_interface -Ilib -Igit-submodules/tskit/c -Igit-submodules/tskit/c/tskit -Igit-submodules/tskit/c/subprojects/kastore -I/tmp/pip-build-env-6vwkq8u5/overlay/lib/python3.11/site-packages/numpy/core/include -I/home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include/python3.11 -c lib/avl.c -o build/temp.linux-x86_64-cpython-311/lib/avl.o -std=c99 gcc -pthread -B /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/compiler_compat -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -O2 -isystem /home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include -fPIC -Ilwt_interface -Ilib -Igit-submodules/tskit/c -Igit-submodules/tskit/c/tskit -Igit-submodules/tskit/c/subprojects/kastore -I/tmp/pip-build-env-6vwkq8u5/overlay/lib/python3.11/site-packages/numpy/core/include -I/home/adminbrice/Softs/miniforge3/envs/acanthophis-demo/include/python3.11 -c lib/fenwick.c -o build/temp.linux-x86_64-cpython-311/lib/fenwick.o -std=c99 lib/fenwick.c:31:10: fatal error: gsl/gsl_math.h: No such file or directory 31 | #include | ^~~~~~~~~~~~~~~~ compilation terminated. error: command '/usr/bin/gcc' failed with exit code 1 [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for msprime Failed to build msprime ERROR: Could not build wheels for msprime, which is required to install pyproject.toml-based projects