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Commits on Oct 30, 2013
  1. Merge pull request #4 from keithj/devel

    keithj committed Oct 30, 2013
    Fixed buffer overrun (fencepost error)
  2. Fixed buffer overrun (fencepost error) where vector indices were being

    keithj committed Oct 30, 2013
    pre- rather than post-incremented.
Commits on Jun 24, 2013
  1. Merge pull request #3 from keithj/devel

    keithj committed Jun 24, 2013
    Imported programs from Variation Informatics svn repository
  2. Imported the pairwise_concordance_bed and snp_af_sample_cr_bed

    keithj committed Jun 24, 2013
    programs from the Variation Informatics svn repository.
    
    Some #include fixes for change from gcc 4.3.2 to gcc 4.6.3
Commits on Apr 15, 2013
  1. Punctuation

    keithj committed Apr 15, 2013
Commits on Jan 14, 2013
  1. Merge pull request #2 from iainrb/devel

    keithj committed Jan 14, 2013
    Improvements to Makefile and README.txt
Commits on Jan 11, 2013
  1. Added note on installation

    Iain Bancarz
    Iain Bancarz committed Jan 11, 2013
  2. Corrected install target

    Iain Bancarz
    Iain Bancarz committed Jan 11, 2013
  3. Updated dependency information

    Iain Bancarz
    Iain Bancarz committed Jan 11, 2013
Commits on May 16, 2012
  1. Merge pull request #1 from keithj/devel

    keithj committed May 16, 2012
    Initialize missing allele in constructor, not in open method.
Commits on May 14, 2012
  1. Checked genotypes_atoi again versus original code. I misunderstood

    keithj committed May 14, 2012
    what it was intending. However, I'm not sure that the original
    algorithm is useful since it arbitrarily assigns alleles to the SNP.
    
    Initialize missing allele in constructor, not in open method.
Commits on Mar 6, 2012
  1. Reinstated making static library

    keithj committed Mar 6, 2012
    Removed excessive Makefile variables
Commits on Mar 5, 2012
  1. Ensured cxxtest root is picked up from environment

    keithj committed Mar 5, 2012
    Ensured that the test runner can find the shared library
  2. Added version number

    keithj committed Mar 5, 2012
    Added some Makefile variables
Commits on Mar 2, 2012
  1. Refactored utility functions out of class

    keithj committed Mar 2, 2012
    Refactored Makefile for shared library
    
    Fixed name clash by renaming is_empty to at_eof
  2. General tidying up

    keithj committed Mar 2, 2012
  3. Refactored genotypes_atoi

    keithj committed Mar 2, 2012
    Added is_known method to snp
    
    Tests for copying and writing genotype calls now pass
Commits on Feb 28, 2012
Commits on Feb 27, 2012
Commits on Feb 23, 2012
  1. Added .gitignore

    keithj committed Feb 23, 2012
  2. Documented public methods

    keithj committed Feb 23, 2012
Commits on Feb 22, 2012
  1. Fixed Illuminus URL

    keithj committed Feb 22, 2012
Commits on Feb 21, 2012
  1. Removed redundant code.

    keithj committed Feb 21, 2012
    Fixed indentation and braces.
  2. Removed redundant code

    keithj committed Feb 21, 2012
  3. Removed leading underscores from header ifdefs (these are reserved fo…

    keithj committed Feb 21, 2012
    …r system names)
    
    Reformatted everything with Uncrustify