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High speed p-value computation for regulatory SNP detection using Motif information
Coverage plots from bam files for a given set of coordinates (and MORE).
An R package for statistical quality control of ChIP-exo/nexus data.
Example data for the ChIPexoQual pacakge
Prior-enhanced read mapping for ChIP-seq
Annotation Regression for GWAS
A package with basic utilities for ChIP analysis (both ChIPseq and ChIPexo)
MOdel-based one and two Sample Analysis and Inference for ChIP-Seq
High resolution identification of protein binding sites using PET and SET ChIP-Seq and ChIP-exo data
Matrix Based Analysis for State-space Inference and Clustering.
Power Calculations for ChIP-seq Experiments