micore

Microbiome Covariance Regression (micore) performs covariance regression in a multinomial logistic-normal model to estimate how microbiome co-occurrence networks vary with respect to covariates. This work was developed in the Greenwood Lab at McGill University.

Installation

You can install micore directly from Github:

if (!require(devtools)) {
  install.packages("devtools")
  library(devtools)
}
install_github("kevinmcgregor/micore", dependencies=TRUE, build_vignettes = TRUE)

Vignette

Once you've successfully installed micore, you can access the vignette by running:

vignette("micore-vignette")