PyMC Example Notebooks
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README
function_maximization.ipynb
function_maximization.pdf
function_maximization.py
gibbs_for_uniform_ball.ipynb
negative_binomial_dist.ipynb
negative_binomial_dist.pdf
negative_binomial_dist.py
pymc_and_pandas.ipynb
pymc_and_pandas.pdf
pymc_and_pandas.py
seeds_re_logistic_regression.ipynb
seeds_re_logistic_regression.pdf
seeds_re_logistic_regression.py

README

PyMC by Example
===============

This repository includes example applications of PyMC as ipython
notebooks.

Contents
--------

pymc_and_pandas:

    example of using pandas.Series and pandas.DataFrame as pymc
    Stochastic and Deterministics


negative_binomial_dist:

    an exploration of how pymc parameterizes the negative
    binomial distribution


function_maximization:

    a simple example of using pymc.MAP to optimize a function of
    3 variables.


gibbs_for_uniform_ball:

    a simple example of subclassing pymc.Gibbs and using it to
    sample uniformly from the unit ball in n-dimensions


seeds_re_logistic_regression:

    a random effects logistic regression for seed growth, made
    famous as an example for BUGS