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Build error should be fixed

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kieranrcampbell committed Feb 6, 2019
1 parent 8502e14 commit 9f8d6b54afb1deb8043d5306470b806c9b96e309
Showing with 38 additions and 2 deletions.
  1. +4 −0 .Rbuildignore
  2. +5 −1 DESCRIPTION
  3. +9 −0 R/clonealign.R
  4. BIN data/df_cnv.rda
  5. +18 −0 man/df_cnv.Rd
  6. +2 −1 vignettes/preparing_copy_number_data.Rmd
@@ -0,0 +1,4 @@
^Meta$
^doc$
^.*\.Rproj$
^\.Rproj\.user$
@@ -23,7 +23,11 @@ Suggests:
testthat,
cowplot,
tidyr,
SingleCellExperiment
SingleCellExperiment,
GenomicRanges,
matrixStats,
org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
biocViews:
Software,
Transcriptomics,
@@ -275,6 +275,15 @@ print.clonealign_fit <- function(x, ...) {
#' data(example_sce)
"example_sce"

#' Example raw copy number data
#'
#' An example data frame with copy number calls by
#' region for three clones (A, B, C)
#'
#' @examples
#' data(df_cnv)
"df_cnv"


#' Example clonealign_fit
#'
BIN +2.18 KB data/df_cnv.rda
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@@ -28,7 +28,8 @@ knitr::opts_chunk$set(
suppressPackageStartupMessages({
library(SummarizedExperiment)
library(tidyverse)
library(dplyr)
library(tidyr)
library(clonealign)
library(TxDb.Hsapiens.UCSC.hg19.knownGene)
library(org.Hs.eg.db)

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