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@kiharalab

Kihara Protein Bioinformatics Laboratory

Software developed in the Kihara Lab

Popular repositories

  1. DOVE Public

    A Deep-learning based dOcking decoy eValuation mEthod

    Python 50 12

  2. GNN_DOVE Public

    Code for "Protein Docking Model Evaluation by Graph Neural Networks"

    Python 32 12

  3. Emap2sec Public

    Emap2sec is a computational tool to identify protein secondary structures

    Jupyter Notebook 13 5

  4. Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning

    Jupyter Notebook 12 8

  5. Contact map denoising using GANs

    Python 7 2

Repositories

  • Emap2secPlus Public

    Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning

    Jupyter Notebook 12 GPL-3.0 8 0 0 Updated Sep 23, 2022
  • Emap2sec Public

    Emap2sec is a computational tool to identify protein secondary structures

    Jupyter Notebook 13 GPL-3.0 5 2 1 Updated Sep 23, 2022
  • DAQ Public

    DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps

    C 6 GPL-3.0 1 0 0 Updated Sep 16, 2022
  • Python 1 GPL-3.0 1 0 0 Updated Sep 12, 2022
  • Jupyter Notebook 2 0 0 0 Updated Sep 4, 2022
  • Attention_AD Public

    Attention LSTM code for "Activation of gene expression by nucleosome detergents"

    Python 1 0 0 0 Updated Aug 23, 2022
  • DOVE Public

    A Deep-learning based dOcking decoy eValuation mEthod

    Python 50 GPL-3.0 12 0 0 Updated Aug 23, 2022
  • Python 3 GPL-3.0 0 0 0 Updated Aug 23, 2022
  • GNN_DOVE Public

    Code for "Protein Docking Model Evaluation by Graph Neural Networks"

    Python 32 GPL-3.0 12 0 0 Updated Aug 23, 2022
  • ColabFoldDAQ Public

    Making Protein folding accessible to all!

    Jupyter Notebook 0 MIT 242 0 0 Updated Aug 12, 2022

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