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Commits on Aug 12, 2010
  1. Added number_of_lanes field to sequencing_sample.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1643 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Aug 12, 2010
Commits on Aug 11, 2010
  1. Add read_length and end_type columns to the sequencing_sample table.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1640 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    rn202 committed Aug 11, 2010
Commits on Jul 15, 2010
  1. Delete pipeprocesses that have missing condor_jobs.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1637 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jul 15, 2010
Commits on Jul 8, 2010
  1. Added column_type().

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1635 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jul 8, 2010
Commits on Jul 5, 2010
  1. Try to avoid running pipeline jobs on CamGrid.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1626 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jul 5, 2010
Commits on Jun 30, 2010
  1. Documentation fix.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1620 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 30, 2010
Commits on Jun 29, 2010
  1. Pipeproject.description can now be null.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1619 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 29, 2010
  2. Removed unused columns from cvterm.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1618 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 29, 2010
Commits on Jun 18, 2010
  1. Documentation fix.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1610 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 18, 2010
  2. Renamed variable for consistency.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1609 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 18, 2010
  3. Fix pipeserv.pl to warn about jobs that are missing from Condor.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1608 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 18, 2010
  4. Improved variable name.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1607 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 18, 2010
  5. Documentation fix.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1606 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 18, 2010
  6. Documentation fix.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1605 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 18, 2010
  7. Add username to log file name to prevent permission denied errors.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1604 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 18, 2010
  8. Check return code of move().

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1601 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 18, 2010
  9. The description on a pipeproject is now optional.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1600 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 18, 2010
Commits on Jun 9, 2010
  1. Sort list.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1585 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 9, 2010
  2. Final spreadsheet update.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1584 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 9, 2010
  3. Documentation improvements.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1583 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 9, 2010
Commits on Jun 1, 2010
  1. Improved error message.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1576 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed Jun 1, 2010
Commits on May 27, 2010
  1. Add short sleep after condor_submit failure.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1573 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 27, 2010
  2. Add latest spreadsheet.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1572 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 27, 2010
  3. Handle some special cases when loading.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1571 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 27, 2010
  4. More documentation.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1570 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 27, 2010
  5. Don't die() if close() fails.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1569 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 27, 2010
Commits on May 25, 2010
  1. Add a project for GEO data.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1565 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 25, 2010
  2. Don't drop dates from 2010.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1564 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 25, 2010
  3. Latest spreadsheet.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1563 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 25, 2010
  4. Rename pipeproject.name to identifier.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1562 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 25, 2010
  5. Fix bad variable name.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1561 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 25, 2010
  6. Add a biosample_creator field to biosample.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1560 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 25, 2010
  7. Fixed to use the project name column from the spreadsheet.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1559 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 25, 2010
  8. Minor documenation fix.

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1558 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 25, 2010
  9. New hack for Becky's samples SL38[123].

    git-svn-id: file:///data/subversion/smallrna/pipeline/trunk@1557 721a6f05-5756-4a90-b3fc-8e2b6c5fda0e
    kmr44 committed May 25, 2010