From 6801726303e9affc8880eb25142396e9a4b807af Mon Sep 17 00:00:00 2001
From: Kim Rutherford <kmr44@cam.ac.uk>
Date: Wed, 3 Apr 2013 10:29:26 +1300
Subject: [PATCH] Rename "qualitative" to "quantitative" everywhere

---
 etc/load-all.sh                                        | 2 +-
 lib/PomBase/Import/{Qualitative.pm => Quantitative.pm} | 6 +++---
 script/pombase-import.pl                               | 2 +-
 3 files changed, 5 insertions(+), 5 deletions(-)
 rename lib/PomBase/Import/{Qualitative.pm => Quantitative.pm} (96%)

diff --git a/etc/load-all.sh b/etc/load-all.sh
index b1b67f98..86fb152a 100755
--- a/etc/load-all.sh
+++ b/etc/load-all.sh
@@ -99,7 +99,7 @@ echo load quantitative gene expression data
 for file in /var/pomcur/sources/quantitative_gene_expression/*
 do
   echo loading: $i
-  ./script/pombase-import.pl load-chado.yaml qualitative --organism_taxonid=9606 $HOST $DB $USER $PASSWORD < $file 2>&1 | tee $LOG_DIR/$log_file.qualitative
+  ./script/pombase-import.pl load-chado.yaml quantitative --organism_taxonid=9606 $HOST $DB $USER $PASSWORD < $file 2>&1 | tee $LOG_DIR/$log_file.qualitative
 done
 
 
diff --git a/lib/PomBase/Import/Qualitative.pm b/lib/PomBase/Import/Quantitative.pm
similarity index 96%
rename from lib/PomBase/Import/Qualitative.pm
rename to lib/PomBase/Import/Quantitative.pm
index 4db44aed..9723ed39 100644
--- a/lib/PomBase/Import/Qualitative.pm
+++ b/lib/PomBase/Import/Quantitative.pm
@@ -1,8 +1,8 @@
-package PomBase::Import::Qualitative;
+package PomBase::Import::Quantitative;
 
 =head1 NAME
 
-PomBase::Import::Qualitative - Import qualitative gene expression data
+PomBase::Import::Quantitative - Import quantitative gene expression data
 
 =head1 SYNOPSIS
 
@@ -18,7 +18,7 @@ Please report any bugs or feature requests to C<kmr44@cam.ac.uk>.
 
 You can find documentation for this module with the perldoc command.
 
-    perldoc PomBase::Import::Qualitative
+    perldoc PomBase::Import::Quantitative
 
 =over 4
 
diff --git a/script/pombase-import.pl b/script/pombase-import.pl
index 7bc2b862..9ee4ad8b 100755
--- a/script/pombase-import.pl
+++ b/script/pombase-import.pl
@@ -88,7 +88,7 @@ sub usage
   gaf => 'PomBase::Import::GeneAssociationFile',
   pomcur => 'PomBase::Import::PomCur',
   orthologs => 'PomBase::Import::Orthologs',
-  qualitative => 'PomBase::Import::Qualitative',
+  quantitative => 'PomBase::Import::Quantitative',
 );
 
 my $import_module = $import_modules{$import_type};