Rename "qualitative" to "quantitative" everywhere

kimrutherford · Apr 2, 2013 · 6801726 · 6801726
1 parent 46b4bd1
commit 6801726
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/etc/load-all.sh b/etc/load-all.sh
@@ -99,7 +99,7 @@ echo load quantitative gene expression data
 for file in /var/pomcur/sources/quantitative_gene_expression/*
 do
   echo loading: $i
-  ./script/pombase-import.pl load-chado.yaml qualitative --organism_taxonid=9606 $HOST $DB $USER $PASSWORD < $file 2>&1 | tee $LOG_DIR/$log_file.qualitative
+  ./script/pombase-import.pl load-chado.yaml quantitative --organism_taxonid=9606 $HOST $DB $USER $PASSWORD < $file 2>&1 | tee $LOG_DIR/$log_file.qualitative
 done
 
 

diff --git a/lib/PomBase/Import/Qualitative.pm → lib/PomBase/Import/Quantitative.pm b/lib/PomBase/Import/Qualitative.pm → lib/PomBase/Import/Quantitative.pm
@@ -1,8 +1,8 @@
-package PomBase::Import::Qualitative;
+package PomBase::Import::Quantitative;
 
 =head1 NAME
 
-PomBase::Import::Qualitative - Import qualitative gene expression data
+PomBase::Import::Quantitative - Import quantitative gene expression data
 
 =head1 SYNOPSIS
 
@@ -18,7 +18,7 @@ Please report any bugs or feature requests to C<kmr44@cam.ac.uk>.
 
 You can find documentation for this module with the perldoc command.
 
-    perldoc PomBase::Import::Qualitative
+    perldoc PomBase::Import::Quantitative
 
 =over 4
 

diff --git a/script/pombase-import.pl b/script/pombase-import.pl
@@ -88,7 +88,7 @@ sub usage
   gaf => 'PomBase::Import::GeneAssociationFile',
   pomcur => 'PomBase::Import::PomCur',
   orthologs => 'PomBase::Import::Orthologs',
-  qualitative => 'PomBase::Import::Qualitative',
+  quantitative => 'PomBase::Import::Quantitative',
 );
 
 my $import_module = $import_modules{$import_type};