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Add qualitative gene_ex data to load script

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1 parent 6e2a1f8 commit e655685a44d23393ad612d34d5cfef0010dea096 @kimrutherford committed Apr 1, 2013
Showing with 10 additions and 0 deletions.
  1. +10 −0 etc/load-all.sh
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10 etc/load-all.sh
@@ -93,6 +93,16 @@ gzip -d < $CURRENT_GOA_GAF | kgrep '\ttaxon:(4896|284812)\t' | ./script/pombase-
echo annotation count after GAF loading:
evidence_summary
+
+echo load quantitative gene expression data
+
+for file in /var/pomcur/sources/quantitative_gene_expression/*
+do
+ echo loading: $i
+ ./script/pombase-import.pl load-chado.yaml quantitative --organism_taxonid=9606 $HOST $DB $USER $PASSWORD < $file 2>&1 | tee $LOG_DIR/$log_file.quantitative
+done
+
+
echo load Compara orthologs
./script/pombase-import.pl load-chado.yaml orthologs --publication=PMID:19029536 --organism_1_taxonid=4896 --organism_2_taxonid=9606 --swap-direction $HOST $DB $USER $PASSWORD < $SOURCES/pombe-embl/orthologs/compara_orths.tsv 2>&1 | tee $LOG_DIR/$log_file.compara_orths

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