diff --git a/CRAN.md b/CRAN.md index 0b85aca8..5e4cbe0a 100644 --- a/CRAN.md +++ b/CRAN.md @@ -31,6 +31,7 @@ git push github v4.6 - perform extra checks: - `make xcheck` - `make ycheck` + - `make rchk` - `make vcheck` and examine `valgrind` output in `pomp-Ex.Rout` for evidence of memory leaks. - `make revdeps` @@ -50,7 +51,7 @@ git push github v4.6 ## Announcement -- Prepare an announcement for the blog: `www/vignettes/_post/` +- Prepare an announcement for the blog: `www/_posts/` - Update manual pages: - `make publish` - Then push changes to `kingaa.github.io` diff --git a/tests/R_v_C.Rout b/tests/R_v_C.Rout index ec1fb7ad..b7f3f7f6 100644 --- a/tests/R_v_C.Rout +++ b/tests/R_v_C.Rout @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. @@ -109,16 +109,16 @@ Type 'q()' to quit R. > ## ----comparison---------------------------------------------------------- > system.time(simulate(gompertz,nsim=10000,format="arrays")) user system elapsed - 6.806 0.114 6.921 + 5.299 0.032 5.331 > system.time(simulate(Gompertz,nsim=10000,format="arrays")) user system elapsed - 0.161 0.001 0.162 + 0.141 0.017 0.159 > system.time(pfilter(gompertz,Np=1000)) user system elapsed - 0.642 0.013 0.655 + 0.541 0.000 0.540 > system.time(pfilter(Gompertz,Np=1000)) user system elapsed - 0.029 0.001 0.029 + 0.028 0.000 0.028 > > dev.off() null device diff --git a/tests/abc.Rout.save b/tests/abc.Rout.save index 2736ddaf..98396f82 100644 --- a/tests/abc.Rout.save +++ b/tests/abc.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/baddm.Rout.save b/tests/baddm.Rout.save index 2f2f554f..e03a5796 100644 --- a/tests/baddm.Rout.save +++ b/tests/baddm.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/bake.Rout.save b/tests/bake.Rout.save index a8171a65..67b7b78f 100644 --- a/tests/bake.Rout.save +++ b/tests/bake.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/basic_probes.Rout.save b/tests/basic_probes.Rout.save index a3459f31..dd03c3d5 100644 --- a/tests/basic_probes.Rout.save +++ b/tests/basic_probes.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/betabinom.Rout.save b/tests/betabinom.Rout.save index 86d5e7e3..ee33d259 100644 --- a/tests/betabinom.Rout.save +++ b/tests/betabinom.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/blowflies.Rout.save b/tests/blowflies.Rout.save index 9d264a4e..59a52598 100644 --- a/tests/blowflies.Rout.save +++ b/tests/blowflies.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/bsmc2-01.png b/tests/bsmc2-01.png index a011ffa6..21b5f44e 100644 Binary files a/tests/bsmc2-01.png and b/tests/bsmc2-01.png differ diff --git a/tests/bsmc2-02.png b/tests/bsmc2-02.png index 2985ed12..d0c4496d 100644 Binary files a/tests/bsmc2-02.png and b/tests/bsmc2-02.png differ diff --git a/tests/bsmc2-03.png b/tests/bsmc2-03.png index d8b012cd..9194afba 100644 Binary files a/tests/bsmc2-03.png and b/tests/bsmc2-03.png differ diff --git a/tests/bsmc2-04.png b/tests/bsmc2-04.png index feac7794..c037bc1a 100644 Binary files a/tests/bsmc2-04.png and b/tests/bsmc2-04.png differ diff --git a/tests/bsmc2.Rout.save b/tests/bsmc2.Rout.save index 8de2ab9d..a1666ed6 100644 --- a/tests/bsmc2.Rout.save +++ b/tests/bsmc2.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/bsplines1.Rout.save b/tests/bsplines1.Rout.save index 05ab6749..05eacf44 100644 --- a/tests/bsplines1.Rout.save +++ b/tests/bsplines1.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/bsplines2.Rout.save b/tests/bsplines2.Rout.save index ddfdc6b9..03f947fb 100644 --- a/tests/bsplines2.Rout.save +++ b/tests/bsplines2.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/concat.Rout.save b/tests/concat.Rout.save index 4a910cc5..853c8aba 100644 --- a/tests/concat.Rout.save +++ b/tests/concat.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/covmat.Rout.save b/tests/covmat.Rout.save index 76c98970..32f6ca58 100644 --- a/tests/covmat.Rout.save +++ b/tests/covmat.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/csnippet.Rout.save b/tests/csnippet.Rout.save index fc8227cd..9893fd68 100644 --- a/tests/csnippet.Rout.save +++ b/tests/csnippet.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/dacca.Rout.save b/tests/dacca.Rout.save index df05eee7..6c2e1760 100644 --- a/tests/dacca.Rout.save +++ b/tests/dacca.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/defunct.Rout.save b/tests/defunct.Rout.save index 8e932e03..850ccaed 100644 --- a/tests/defunct.Rout.save +++ b/tests/defunct.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. @@ -20,91 +20,91 @@ Type 'q()' to quit R. > library(pomp) > > try(as.pomp()) -Error : 'as.pomp' is defunct. +Error in as.pomp() : 'as.pomp' is defunct. Use 'as_pomp' instead. See help("Defunct") > try(bspline.basis()) -Error : 'bspline.basis' is defunct. +Error in bspline.basis() : 'bspline.basis' is defunct. Use 'bspline_basis' instead. See help("Defunct") > try(cond.logLik()) -Error : 'cond.logLik' is defunct. +Error in cond.logLik() : 'cond.logLik' is defunct. Use 'cond_logLik' instead. See help("Defunct") > try(eff.sample.size()) -Error : 'eff.sample.size' is defunct. +Error in eff.sample.size() : 'eff.sample.size' is defunct. Use 'eff_sample_size' instead. See help("Defunct") > try(mvn.diag.rw()) -Error : 'mvn.diag.rw' is defunct. +Error in mvn.diag.rw() : 'mvn.diag.rw' is defunct. Use 'mvn_diag_rw' instead. See help("Defunct") > try(mvn.rw()) -Error : 'mvn.rw' is defunct. +Error in mvn.rw() : 'mvn.rw' is defunct. Use 'mvn_rw' instead. See help("Defunct") > try(mvn.rw.adaptive()) -Error : 'mvn.rw.adaptive' is defunct. +Error in mvn.rw.adaptive() : 'mvn.rw.adaptive' is defunct. Use 'mvn_rw_adaptive' instead. See help("Defunct") > try(periodic.bspline.basis()) -Error : 'periodic.bspline.basis' is defunct. +Error in periodic.bspline.basis() : 'periodic.bspline.basis' is defunct. Use 'periodic_bspline_basis' instead. See help("Defunct") > try(pred.mean()) -Error : 'pred.mean' is defunct. +Error in pred.mean() : 'pred.mean' is defunct. Use 'pred_mean' instead. See help("Defunct") > try(pred.var()) -Error : 'pred.var' is defunct. +Error in pred.var() : 'pred.var' is defunct. Use 'pred_var' instead. See help("Defunct") > try(probe.acf()) -Error : 'probe.acf' is defunct. +Error in probe.acf() : 'probe.acf' is defunct. Use 'probe_acf' instead. See help("Defunct") > try(probe.ccf()) -Error : 'probe.ccf' is defunct. +Error in probe.ccf() : 'probe.ccf' is defunct. Use 'probe_ccf' instead. See help("Defunct") > try(probe.marginal()) -Error : 'probe.marginal' is defunct. +Error in probe.marginal() : 'probe.marginal' is defunct. Use 'probe_marginal' instead. See help("Defunct") > try(probe.mean()) -Error : 'probe.mean' is defunct. +Error in probe.mean() : 'probe.mean' is defunct. Use 'probe_mean' instead. See help("Defunct") > try(probe.median()) -Error : 'probe.median' is defunct. +Error in probe.median() : 'probe.median' is defunct. Use 'probe_median' instead. See help("Defunct") > try(probe.nlar()) -Error : 'probe.nlar' is defunct. +Error in probe.nlar() : 'probe.nlar' is defunct. Use 'probe_nlar' instead. See help("Defunct") > try(probe.period()) -Error : 'probe.period' is defunct. +Error in probe.period() : 'probe.period' is defunct. Use 'probe_period' instead. See help("Defunct") > try(probe.quantile()) -Error : 'probe.quantile' is defunct. +Error in probe.quantile() : 'probe.quantile' is defunct. Use 'probe_quantile' instead. See help("Defunct") > try(probe.sd()) -Error : 'probe.sd' is defunct. +Error in probe.sd() : 'probe.sd' is defunct. Use 'probe_sd' instead. See help("Defunct") > try(probe.var()) -Error : 'probe.var' is defunct. +Error in probe.var() : 'probe.var' is defunct. Use 'probe_var' instead. See help("Defunct") > try(rw.sd()) -Error : 'rw.sd' is defunct. +Error in rw.sd() : 'rw.sd' is defunct. Use 'rw_sd' instead. See help("Defunct") > try(saved.states()) -Error : 'saved.states' is defunct. +Error in saved.states() : 'saved.states' is defunct. Use 'saved_states' instead. See help("Defunct") > diff --git a/tests/dinit.Rout.save b/tests/dinit.Rout.save index c481973d..fa6ff191 100644 --- a/tests/dinit.Rout.save +++ b/tests/dinit.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/dp-01.png b/tests/dp-01.png index 01f6850d..096ea7a4 100644 Binary files a/tests/dp-01.png and b/tests/dp-01.png differ diff --git a/tests/dp-02.png b/tests/dp-02.png index 3bcc30f8..74976565 100644 Binary files a/tests/dp-02.png and b/tests/dp-02.png differ diff --git a/tests/dp-03.png b/tests/dp-03.png index b499ed7c..d19f3b22 100644 Binary files a/tests/dp-03.png and b/tests/dp-03.png differ diff --git a/tests/dp.Rout.save b/tests/dp.Rout.save index 894c440a..bfce5985 100644 --- a/tests/dp.Rout.save +++ b/tests/dp.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/dprocess.Rout.save b/tests/dprocess.Rout.save index ddc90dbc..e6340f2f 100644 --- a/tests/dprocess.Rout.save +++ b/tests/dprocess.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/ebola.Rout.save b/tests/ebola.Rout.save index 363f2ed0..0f0358bb 100644 --- a/tests/ebola.Rout.save +++ b/tests/ebola.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/emeasure.Rout.save b/tests/emeasure.Rout.save index 134fb57e..ba2374fa 100644 --- a/tests/emeasure.Rout.save +++ b/tests/emeasure.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/eulermultinom.Rout.save b/tests/eulermultinom.Rout.save index 431ed8ba..3132c76d 100644 --- a/tests/eulermultinom.Rout.save +++ b/tests/eulermultinom.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/flow.Rout.save b/tests/flow.Rout.save index 65996bd4..6990f25e 100644 --- a/tests/flow.Rout.save +++ b/tests/flow.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/gillespie.Rout.save b/tests/gillespie.Rout.save index d5fbae88..27e9f2b4 100644 --- a/tests/gillespie.Rout.save +++ b/tests/gillespie.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/gompertz.Rout.save b/tests/gompertz.Rout.save index 353d16c4..ee7e1077 100644 --- a/tests/gompertz.Rout.save +++ b/tests/gompertz.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/helpers.Rout.save b/tests/helpers.Rout.save index c8b998e7..3b63ee12 100644 --- a/tests/helpers.Rout.save +++ b/tests/helpers.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/hitch.Rout.save b/tests/hitch.Rout.save index 945c45af..c2f206cc 100644 --- a/tests/hitch.Rout.save +++ b/tests/hitch.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/issue109.Rout.save b/tests/issue109.Rout.save index 4f12c982..c70b9cf5 100644 --- a/tests/issue109.Rout.save +++ b/tests/issue109.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/issue56.Rout.save b/tests/issue56.Rout.save index 3a4adc7f..490b6915 100644 --- a/tests/issue56.Rout.save +++ b/tests/issue56.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/kalman.Rout.save b/tests/kalman.Rout.save index 4235da2d..0cac8e7d 100644 --- a/tests/kalman.Rout.save +++ b/tests/kalman.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/kalman2.Rout.save b/tests/kalman2.Rout.save index eeaf34f6..dc2b5c5c 100644 --- a/tests/kalman2.Rout.save +++ b/tests/kalman2.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/link.Rout.save b/tests/link.Rout.save index 2816b18d..f92d7b21 100644 --- a/tests/link.Rout.save +++ b/tests/link.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/load.Rout.save b/tests/load.Rout.save index 9c0abf67..0b83dac3 100644 --- a/tests/load.Rout.save +++ b/tests/load.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/logmeanexp.Rout.save b/tests/logmeanexp.Rout.save index 5e486ac6..09d5884f 100644 --- a/tests/logmeanexp.Rout.save +++ b/tests/logmeanexp.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/lookup.Rout.save b/tests/lookup.Rout.save index 56807968..eae3fb7e 100644 --- a/tests/lookup.Rout.save +++ b/tests/lookup.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/map.Rout.save b/tests/map.Rout.save index 29ef58c9..09193b1e 100644 --- a/tests/map.Rout.save +++ b/tests/map.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/mcap.Rout.save b/tests/mcap.Rout.save index 42204343..778afc5e 100644 --- a/tests/mcap.Rout.save +++ b/tests/mcap.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/measure.Rout.save b/tests/measure.Rout.save index 403ea4f2..141cae36 100644 --- a/tests/measure.Rout.save +++ b/tests/measure.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/mif2.Rout.save b/tests/mif2.Rout.save index 840cadf9..eb90ef61 100644 --- a/tests/mif2.Rout.save +++ b/tests/mif2.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/mif2_index.Rout.save b/tests/mif2_index.Rout.save index aec7804f..f8c5adf1 100644 --- a/tests/mif2_index.Rout.save +++ b/tests/mif2_index.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/mif2_kf.Rout.save b/tests/mif2_kf.Rout.save index f42311e1..39ffc989 100644 --- a/tests/mif2_kf.Rout.save +++ b/tests/mif2_kf.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/nlf.Rout.save b/tests/nlf.Rout.save index d55e96a5..06a3a07c 100644 --- a/tests/nlf.Rout.save +++ b/tests/nlf.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/nullcases.Rout.save b/tests/nullcases.Rout.save index 93cb2644..dd6c9de5 100644 --- a/tests/nullcases.Rout.save +++ b/tests/nullcases.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/ou2.Rout.save b/tests/ou2.Rout.save index 7ac94802..5f025d6d 100644 --- a/tests/ou2.Rout.save +++ b/tests/ou2.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/parmat.Rout.save b/tests/parmat.Rout.save index 7ea513b3..236bbf82 100644 --- a/tests/parmat.Rout.save +++ b/tests/parmat.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/partrans.Rout.save b/tests/partrans.Rout.save index 4a67e423..0d36c046 100644 --- a/tests/partrans.Rout.save +++ b/tests/partrans.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/pfilter.Rout.save b/tests/pfilter.Rout.save index da2eb8f8..5b544e68 100644 --- a/tests/pfilter.Rout.save +++ b/tests/pfilter.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/pfilter2.Rout.save b/tests/pfilter2.Rout.save index 85ea9812..66796192 100644 --- a/tests/pfilter2.Rout.save +++ b/tests/pfilter2.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/pmcmc-02.png b/tests/pmcmc-02.png index a8b01db0..cc2996fe 100644 Binary files a/tests/pmcmc-02.png and b/tests/pmcmc-02.png differ diff --git a/tests/pmcmc-03.png b/tests/pmcmc-03.png index 20bbf4c7..3e1b526a 100644 Binary files a/tests/pmcmc-03.png and b/tests/pmcmc-03.png differ diff --git a/tests/pmcmc-04.png b/tests/pmcmc-04.png index 5e22e72e..bfee40f8 100644 Binary files a/tests/pmcmc-04.png and b/tests/pmcmc-04.png differ diff --git a/tests/pmcmc.Rout.save b/tests/pmcmc.Rout.save index 946a9693..1a230e07 100644 --- a/tests/pmcmc.Rout.save +++ b/tests/pmcmc.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/pomp.Rout.save b/tests/pomp.Rout.save index 76c2d530..12958d95 100644 --- a/tests/pomp.Rout.save +++ b/tests/pomp.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/pomp_fun.Rout.save b/tests/pomp_fun.Rout.save index 455d3741..8775716a 100644 --- a/tests/pomp_fun.Rout.save +++ b/tests/pomp_fun.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/pomp_methods.Rout.save b/tests/pomp_methods.Rout.save index 7365aec2..c801f97e 100644 --- a/tests/pomp_methods.Rout.save +++ b/tests/pomp_methods.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/prior.Rout.save b/tests/prior.Rout.save index ffb49787..b4188908 100644 --- a/tests/prior.Rout.save +++ b/tests/prior.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/probe.Rout.save b/tests/probe.Rout.save index e9dd1fe3..a3eb92b7 100644 --- a/tests/probe.Rout.save +++ b/tests/probe.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/probe_match.Rout.save b/tests/probe_match.Rout.save index 29cd41fd..8e0a6eb9 100644 --- a/tests/probe_match.Rout.save +++ b/tests/probe_match.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/process.Rout.save b/tests/process.Rout.save index 2ba8f1e9..b6681c76 100644 --- a/tests/process.Rout.save +++ b/tests/process.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/profile_design.Rout.save b/tests/profile_design.Rout.save index 2d7079b6..aab128f5 100644 --- a/tests/profile_design.Rout.save +++ b/tests/profile_design.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/proposals.Rout.save b/tests/proposals.Rout.save index a39e0488..1c54759d 100644 --- a/tests/proposals.Rout.save +++ b/tests/proposals.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/resample.Rout.save b/tests/resample.Rout.save index b7f65de9..aacd1ddb 100644 --- a/tests/resample.Rout.save +++ b/tests/resample.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/rgammawn.Rout.save b/tests/rgammawn.Rout.save index e980d34e..a2922a9b 100644 --- a/tests/rgammawn.Rout.save +++ b/tests/rgammawn.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/ricker.Rout.save b/tests/ricker.Rout.save index 9d695ff7..5211a625 100644 --- a/tests/ricker.Rout.save +++ b/tests/ricker.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/rinit.Rout.save b/tests/rinit.Rout.save index 6989a8ed..64971770 100644 --- a/tests/rinit.Rout.save +++ b/tests/rinit.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/runif_design.Rout.save b/tests/runif_design.Rout.save index e388bb2d..5d9a4c58 100644 --- a/tests/runif_design.Rout.save +++ b/tests/runif_design.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/rw2.Rout.save b/tests/rw2.Rout.save index 4ae264c7..ab9bffd2 100644 --- a/tests/rw2.Rout.save +++ b/tests/rw2.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/sannbox.Rout.save b/tests/sannbox.Rout.save index 5d992a0d..617102f7 100644 --- a/tests/sannbox.Rout.save +++ b/tests/sannbox.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/simulate.Rout.save b/tests/simulate.Rout.save index ea5de728..8a33bb7e 100644 --- a/tests/simulate.Rout.save +++ b/tests/simulate.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/simulate_data_frame.Rout.save b/tests/simulate_data_frame.Rout.save index e90515dd..3dc2d428 100644 --- a/tests/simulate_data_frame.Rout.save +++ b/tests/simulate_data_frame.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/sir.Rout.save b/tests/sir.Rout.save index b9ce97ef..867e1920 100644 --- a/tests/sir.Rout.save +++ b/tests/sir.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/sir2.Rout.save b/tests/sir2.Rout.save index 440a5a8d..3b6b3b2d 100644 --- a/tests/sir2.Rout.save +++ b/tests/sir2.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/skeleton.Rout.save b/tests/skeleton.Rout.save index 65a5799a..49803df8 100644 --- a/tests/skeleton.Rout.save +++ b/tests/skeleton.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/slice_design.Rout.save b/tests/slice_design.Rout.save index 69528c6c..944c93f5 100644 --- a/tests/slice_design.Rout.save +++ b/tests/slice_design.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/sobol.Rout.save b/tests/sobol.Rout.save index 706a1c40..35d92912 100644 --- a/tests/sobol.Rout.save +++ b/tests/sobol.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/spect.Rout.save b/tests/spect.Rout.save index 6946dec1..726efef2 100644 --- a/tests/spect.Rout.save +++ b/tests/spect.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/spect_match.Rout.save b/tests/spect_match.Rout.save index e201bd37..71959a2a 100644 --- a/tests/spect_match.Rout.save +++ b/tests/spect_match.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/spy.Rout b/tests/spy.Rout index 55cef708..330cb77b 100644 --- a/tests/spy.Rout +++ b/tests/spy.Rout @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. @@ -164,8 +164,8 @@ params /* pomp C snippet file: nancy */ -/* Time: 2024-03-27 15:25:54.572 -0400 */ -/* Salt: 6EC6A79964CC1D99B30FDEFF */ +/* Time: 2024-04-30 08:11:15.392 -0400 */ +/* Salt: 9DAA8D5E59418992A0EAF24D */ #include #include @@ -288,8 +288,8 @@ pomp object 'sir': /* pomp C snippet file: sir_source */ -/* Time: 2024-03-27 15:25:55.433 -0400 */ -/* Salt: 676B249309BF98F6D7F6B18E */ +/* Time: 2024-04-30 08:11:15.534 -0400 */ +/* Salt: 1914EAA2FC08263B6B35F012 */ #include #include @@ -938,8 +938,8 @@ x1_0 x2_0 s1 s2 tau /* pomp C snippet file: rw2_source */ -/* Time: 2024-03-27 15:25:58.245 -0400 */ -/* Salt: AB255E291602E8C8EA24A91E */ +/* Time: 2024-04-30 08:11:16.276 -0400 */ +/* Salt: A38A303EEFC617D84B031F01 */ #include #include @@ -1205,8 +1205,8 @@ name birth susc.death infection inf.death recovery recov.death /* pomp C snippet file: sir2_source */ -/* Time: 2024-03-27 15:26:03.723 -0400 */ -/* Salt: CDD83478B2CCADE20765FA73 */ +/* Time: 2024-04-30 08:11:16.942 -0400 */ +/* Salt: A84F6E43E37D60B24FCF12A3 */ #include #include @@ -1855,7 +1855,7 @@ pomp object 'pomp(data = NULL, t0 = 0, times = 1:10, x0 = as.double(1), params = - covariates: - initial state simulator, rinit: native function - name: '__pomp_rinit' - - defined by a C snippet in library 'pomp_1a6745d587f77877a824d926db75a2c0' + - defined by a C snippet in library 'pomp_7593eefc78309496b4fd8edac45a6d5b' - initial state density, dinit: - process-model simulator, rprocess: - process model density, dprocess: @@ -1876,9 +1876,9 @@ x_0 a - C snippet file 1 : -/* pomp C snippet file: pomp_1a6745d587f77877a824d926db75a2c0 */ -/* Time: 2024-03-27 15:26:09.147 -0400 */ -/* Salt: 74B38B5217971F625F762D9C */ +/* pomp C snippet file: pomp_7593eefc78309496b4fd8edac45a6d5b */ +/* Time: 2024-04-30 08:11:17.693 -0400 */ +/* Salt: F4C2DD06FA27C30274EA1C20 */ #include #include @@ -1904,11 +1904,11 @@ void __pomp_load_stack_incr (void) {++__pomp_load_stack;} void __pomp_load_stack_decr (int *val) {*val = --__pomp_load_stack;} -void R_init_pomp_1a6745d587f77877a824d926db75a2c0 (DllInfo *info) { +void R_init_pomp_7593eefc78309496b4fd8edac45a6d5b (DllInfo *info) { __pomp_get_userdata_double = (get_userdata_double_t *) R_GetCCallable("pomp","get_userdata_double"); - R_RegisterCCallable("pomp_1a6745d587f77877a824d926db75a2c0", "__pomp_load_stack_incr", (DL_FUNC) __pomp_load_stack_incr); - R_RegisterCCallable("pomp_1a6745d587f77877a824d926db75a2c0", "__pomp_load_stack_decr", (DL_FUNC) __pomp_load_stack_decr); - R_RegisterCCallable("pomp_1a6745d587f77877a824d926db75a2c0", "__pomp_rinit", (DL_FUNC) __pomp_rinit); + R_RegisterCCallable("pomp_7593eefc78309496b4fd8edac45a6d5b", "__pomp_load_stack_incr", (DL_FUNC) __pomp_load_stack_incr); + R_RegisterCCallable("pomp_7593eefc78309496b4fd8edac45a6d5b", "__pomp_load_stack_decr", (DL_FUNC) __pomp_load_stack_decr); + R_RegisterCCallable("pomp_7593eefc78309496b4fd8edac45a6d5b", "__pomp_rinit", (DL_FUNC) __pomp_rinit); } @@ -1936,13 +1936,13 @@ pomp object 'pomp(data = NULL, t0 = 0, times = 1:10, x0 = as.double(1), params = - covariates: - initial state simulator, rinit: native function - name: '__pomp_rinit' - - defined by a C snippet in library 'pomp_6db3f61926aa56ea5c65c689aca30185' + - defined by a C snippet in library 'pomp_15209364fa46c0260cceddeb3a7b755f' - initial state density, dinit: - process-model simulator, rprocess: Euler-method process-model simulator - timestep = 0.1 - step.fun: native function - name: '__pomp_stepfn' - - defined by a C snippet in library 'pomp_6db3f61926aa56ea5c65c689aca30185' + - defined by a C snippet in library 'pomp_15209364fa46c0260cceddeb3a7b755f' - process model density, dprocess: - measurement model simulator, rmeasure: - measurement model density, dmeasure: @@ -1961,9 +1961,9 @@ x_0 a - C snippet file 1 : -/* pomp C snippet file: pomp_6db3f61926aa56ea5c65c689aca30185 */ -/* Time: 2024-03-27 15:26:10.021 -0400 */ -/* Salt: C0CB33CB121141581BFA68BE */ +/* pomp C snippet file: pomp_15209364fa46c0260cceddeb3a7b755f */ +/* Time: 2024-04-30 08:11:17.757 -0400 */ +/* Salt: 5D262BD7C9FFE34612D44BBD */ #include #include @@ -2001,12 +2001,12 @@ void __pomp_load_stack_incr (void) {++__pomp_load_stack;} void __pomp_load_stack_decr (int *val) {*val = --__pomp_load_stack;} -void R_init_pomp_6db3f61926aa56ea5c65c689aca30185 (DllInfo *info) { +void R_init_pomp_15209364fa46c0260cceddeb3a7b755f (DllInfo *info) { __pomp_get_userdata_double = (get_userdata_double_t *) R_GetCCallable("pomp","get_userdata_double"); - R_RegisterCCallable("pomp_6db3f61926aa56ea5c65c689aca30185", "__pomp_load_stack_incr", (DL_FUNC) __pomp_load_stack_incr); - R_RegisterCCallable("pomp_6db3f61926aa56ea5c65c689aca30185", "__pomp_load_stack_decr", (DL_FUNC) __pomp_load_stack_decr); - R_RegisterCCallable("pomp_6db3f61926aa56ea5c65c689aca30185", "__pomp_rinit", (DL_FUNC) __pomp_rinit); - R_RegisterCCallable("pomp_6db3f61926aa56ea5c65c689aca30185", "__pomp_stepfn", (DL_FUNC) __pomp_stepfn); + R_RegisterCCallable("pomp_15209364fa46c0260cceddeb3a7b755f", "__pomp_load_stack_incr", (DL_FUNC) __pomp_load_stack_incr); + R_RegisterCCallable("pomp_15209364fa46c0260cceddeb3a7b755f", "__pomp_load_stack_decr", (DL_FUNC) __pomp_load_stack_decr); + R_RegisterCCallable("pomp_15209364fa46c0260cceddeb3a7b755f", "__pomp_rinit", (DL_FUNC) __pomp_rinit); + R_RegisterCCallable("pomp_15209364fa46c0260cceddeb3a7b755f", "__pomp_stepfn", (DL_FUNC) __pomp_stepfn); X0 = *get_userdata_double("x0"); } diff --git a/tests/steps.Rout.save b/tests/steps.Rout.save index a5c10845..ddcb7adc 100644 --- a/tests/steps.Rout.save +++ b/tests/steps.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/synlik-01.png b/tests/synlik-01.png index c284aa5d..ca8949b5 100644 Binary files a/tests/synlik-01.png and b/tests/synlik-01.png differ diff --git a/tests/synlik-02.png b/tests/synlik-02.png index 9425fcd4..d949beae 100644 Binary files a/tests/synlik-02.png and b/tests/synlik-02.png differ diff --git a/tests/synlik.Rout.save b/tests/synlik.Rout.save index 8d14cdfc..fc96fcd4 100644 --- a/tests/synlik.Rout.save +++ b/tests/synlik.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/traj_match-03.png b/tests/traj_match-03.png index 54719c8b..1579636f 100644 Binary files a/tests/traj_match-03.png and b/tests/traj_match-03.png differ diff --git a/tests/traj_match.Rout.save b/tests/traj_match.Rout.save index c672d3a0..d8d5f160 100644 --- a/tests/traj_match.Rout.save +++ b/tests/traj_match.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/trajectory.Rout.save b/tests/trajectory.Rout.save index b90f7d5c..20ee0168 100644 --- a/tests/trajectory.Rout.save +++ b/tests/trajectory.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/transformations.Rout.save b/tests/transformations.Rout.save index 4a39a735..c961c16e 100644 --- a/tests/transformations.Rout.save +++ b/tests/transformations.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/undefined.Rout.save b/tests/undefined.Rout.save index 90767ff5..5035e354 100644 --- a/tests/undefined.Rout.save +++ b/tests/undefined.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/userdata.Rout.save b/tests/userdata.Rout.save index b1793790..146346df 100644 --- a/tests/userdata.Rout.save +++ b/tests/userdata.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/verhulst.Rout.save b/tests/verhulst.Rout.save index cb851f8d..666ad0d6 100644 --- a/tests/verhulst.Rout.save +++ b/tests/verhulst.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/vmeasure.Rout.save b/tests/vmeasure.Rout.save index 61982106..f2850462 100644 --- a/tests/vmeasure.Rout.save +++ b/tests/vmeasure.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/wpfilter.Rout.save b/tests/wpfilter.Rout.save index 95156116..603f8677 100644 --- a/tests/wpfilter.Rout.save +++ b/tests/wpfilter.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. diff --git a/tests/wquant.Rout.save b/tests/wquant.Rout.save index ef100a2d..9b402d54 100644 --- a/tests/wquant.Rout.save +++ b/tests/wquant.Rout.save @@ -1,7 +1,7 @@ -R version 4.3.3 (2024-02-29) -- "Angel Food Cake" +R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing -Platform: x86_64-pc-linux-gnu (64-bit) +Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions.