Example output file?

[stianlagstad]

Hi,

I would like to know if the output data that SQUID produces can be used with https://github.com/stianlagstad/chimeraviz. Do you have any example output files that you can share?

Thank you!

[Congm12]

Hi,

Please see the following example of output file in the attachment of an HCC1954 sample using GRCh37 genome. The meaning of each column is in the Output Specification section.

hcc1954_sv.txt

[stianlagstad]

Thank you very much. Is it alright if I include that file in the chimeraviz package, as example data? If ok with you, I'll add that in this PR: stianlagstad/chimeraviz#79

[Congm12]

That's totally fine.

[stianlagstad]

Thanks again!