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UserWarning: Invalid value for VR UI #39

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dmd opened this issue Feb 9, 2023 · 1 comment
Closed

UserWarning: Invalid value for VR UI #39

dmd opened this issue Feb 9, 2023 · 1 comment

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@dmd
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dmd commented Feb 9, 2023

I'm seeing:

(useful) ddrucker@mic-dicom-router-mercure:~$ dicom-anonymizer E12034344 anon
  0%|                                                  | 0/3612 [00:00<?, ?it/s]/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/valuerep.py:290: UserWarning: Invalid value for VR UI: '1.1.16.7.6707.3.3.60.06253.2332294204858050509242727.5.1.9'. Please see <https://dicom.nema.org/medical/dicom/current/output/html/part05.html#table_6.2-1> for allowed values for each VR.
  warnings.warn(msg)
/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/valuerep.py:290: UserWarning: Invalid value for VR UI: '7.6.013.026981.5934635445.0220487836.2'. Please see <https://dicom.nema.org/medical/dicom/current/output/html/part05.html#table_6.2-1> for allowed values for each VR.
  warnings.warn(msg)
/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/valuerep.py:290: UserWarning: Invalid value for VR UI: '5.1.59.6.4683.0.4.60.82574.0199929790689920395106101.5.8.8'. Please see <https://dicom.nema.org/medical/dicom/current/output/html/part05.html#table_6.2-1> for allowed values for each VR.
  warnings.warn(msg)
/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/valuerep.py:290: UserWarning: Invalid value for VR UI: '3.9.59.4.0298.8.4.72.68889.658132895322857682744131'. Please see <https://dicom.nema.org/medical/dicom/current/output/html/part05.html#table_6.2-1> for allowed values for each VR.
  warnings.warn(msg)
  0%|                                          | 2/3612 [00:00<03:52, 15.55it/s]/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/valuerep.py:290: UserWarning: Invalid value for VR UI: '0.2.08.6.9364.4.6.39.26563.3829691537983094193002813.7.1.1'. Please see <https://dicom.nema.org/medical/dicom/current/output/html/part05.html#table_6.2-1> for allowed values for each VR.
  warnings.warn(msg)
  0%|                                          | 5/3612 [00:00<02:50, 21.12it/s]/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/valuerep.py:290: UserWarning: Invalid value for VR UI: '5.6.63.5.3208.2.0.67.68311.0344948525748214621517980'. Please see <https://dicom.nema.org/medical/dicom/current/output/html/part05.html#table_6.2-1> for allowed values for each VR.
  warnings.warn(msg)
  0%|                                          | 8/3612 [00:00<02:32, 23.65it/s]/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/valuerep.py:290: UserWarning: Invalid value for VR UI: '5.3.40.7.9556.8.5.07.50254.3682606057412565359545607'. Please see <https://dicom.nema.org/medical/dicom/current/output/html/part05.html#table_6.2-1> for allowed values for each VR.
  warnings.warn(msg)
/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/valuerep.py:290: UserWarning: Invalid value for VR UI: '2.3.42.7.0184.5.4.49.35639.4066135185099479761379104'. Please see <https://dicom.nema.org/medical/dicom/current/output/html/part05.html#table_6.2-1> for allowed values for each VR.
  warnings.warn(msg)
/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/valuerep.py:290: UserWarning: Invalid value for VR UI: '8.4.08.0.3756.8.9.48.29829.1828695589432128234084115'. Please see <https://dicom.nema.org/medical/dicom/current/output/html/part05.html#table_6.2-1> for allowed values for each VR.
  warnings.warn(msg)
  0%|▏                                        | 12/3612 [00:00<02:09, 27.87it/s]Traceback (most recent call last):
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/dataset.py", line 762, in get
    key = Tag(key)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/tag.py", line 84, in Tag
    raise ValueError("Tag must be an int or a 2-tuple")
ValueError: Tag must be an int or a 2-tuple

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/tag.py", line 28, in tag_in_exception
    yield
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/dataset.py", line 2390, in walk
    callback(self, data_element)  # self = this Dataset
  File "/home/ddrucker/useful/lib/python3.8/site-packages/dicomanonymizer/simpledicomanonymizer.py", line 387, in range_callback
    action(dataset, tag)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/dicomanonymizer/simpledicomanonymizer.py", line 164, in delete
    element = dataset.get(tag)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/dataset.py", line 764, in get
    raise TypeError("Dataset.get key must be a string or tag") from exc
TypeError: Dataset.get key must be a string or tag

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/ddrucker/useful/bin/dicom-anonymizer", line 8, in <module>
    sys.exit(main())
  File "/home/ddrucker/useful/lib/python3.8/site-packages/dicomanonymizer/anonymizer.py", line 161, in main
    anonymize(input_path, output_path, new_anonymization_actions, not args.keepPrivateTags)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/dicomanonymizer/anonymizer.py", line 50, in anonymize
    anonymize_dicom_file(input_files_list[cpt], output_files_list[cpt], anonymization_actions, deletePrivateTags)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/dicomanonymizer/simpledicomanonymizer.py", line 295, in anonymize_dicom_file
    anonymize_dataset(dataset, extra_anonymization_rules, delete_private_tags)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/dicomanonymizer/simpledicomanonymizer.py", line 393, in anonymize_dataset
    dataset.walk(range_callback)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/dataset.py", line 2396, in walk
    dataset.walk(callback)
  File "/usr/lib/python3.8/contextlib.py", line 131, in __exit__
    self.gen.throw(type, value, traceback)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/tag.py", line 32, in tag_in_exception
    raise type(exc)(msg) from exc
TypeError: With tag (6000, 3000) got exception: Dataset.get key must be a string or tag
Traceback (most recent call last):
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/dataset.py", line 762, in get
    key = Tag(key)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/tag.py", line 84, in Tag
    raise ValueError("Tag must be an int or a 2-tuple")
ValueError: Tag must be an int or a 2-tuple

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/tag.py", line 28, in tag_in_exception
    yield
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/dataset.py", line 2390, in walk
    callback(self, data_element)  # self = this Dataset
  File "/home/ddrucker/useful/lib/python3.8/site-packages/dicomanonymizer/simpledicomanonymizer.py", line 387, in range_callback
    action(dataset, tag)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/dicomanonymizer/simpledicomanonymizer.py", line 164, in delete
    element = dataset.get(tag)
  File "/home/ddrucker/useful/lib/python3.8/site-packages/pydicom/dataset.py", line 764, in get
    raise TypeError("Dataset.get key must be a string or tag") from exc
TypeError: Dataset.get key must be a string or tag

  0%|▏                                        | 12/3612 [00:00<02:29, 24.13it/s]
(useful) ddrucker@mic-dicom-router-mercure:~$
@dmd
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dmd commented Feb 9, 2023

Sorry, I was using the released package rather than the head of main.

@dmd dmd closed this as completed Feb 9, 2023
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