Skip to content

Compiling

crtrott edited this page Mar 22, 2018 · 1 revision

Chapter 4

Compiling

This chapter explains how to compile Kokkos and how to link your application against Kokkos. Kokkos supports two build systems:

  • Using the embedded Makefile
  • Trilinos' CMake build system

Note that the two explicitly supported build methods should not be mixed. For example, do not include the embedded Makefile in your application build process, while explicitly linking against a pre-compiled Kokkos library in Trilinos. We also include specific advice for building for NVIDIA GPUs and for Intel Xeon Phi.

4.1 General Information

Kokkos consists mainly of header files. Only a few functions have to be compiled into object files outside of the application's source code. Those functions are contained in .cpp files inside the kokkos/core/src directory and its subdirectories. The files are internally protected with macros to prevent compilation if the related execution space is not enabled. Thus, it is not necessary to create a list of included object files specific to your compilation target; one may simply compile all .cpp files. The enabled features are controlled via macros which have to be provided in the compilation line or in the KokkosCore_config.h include file; a list of macros can be found in Table 4.1. In order to compile Kokkos, a C++11 compliant compiler is needed. For an up to date list of compilers which are tested on a nightly basis, please refer to the README on the github repository. At the time of writing supported compilers include:

Primary tested compilers on X86
    GCC 4.8.4, 4.9.3, 5.1.0, 5.3.0, 6.1.0;
    Intel 15.0.2, 16.0.1, 16.0.3, 17.0.098, 17.1.132;  
    Clang 3.6.1, 3.7.1, 3.8.1, 3.9.0;  
    Cuda 7.0, 7.5, 8.0;
    PGI 17.10  
Primary tested compilers on Power 8
    XL 13.1.3 (OpenMP, Serial)
    GCC 5.4.0 (OpenMP, Serial)
    Cuda 8.0, 9.0 (with gcc 5.4.0);
Primary tested compilers on Intel KNL
    GCC 6.2.0
    Intel 16.4.258 (with gcc 4.7.4)
    Intel 17.2.174 (with gcc 4.9.3)
    Intel 18.0.128 (with gcc 4.9.3)

Secondary tested compilers
    CUDA 7.0, 7.5 (with gcc 4.8.4)
    CUDA 8.0 (with gcc 5.3.0 on X86)
    CUDA 8.0 (with gcc 5.4.0 on Power8)
    Clang 4.0 (with CUDA 8.0, using Clang as the CUDA compiler, requires 384.x CUDA drivers)

Other working compilers
    Cygwin 2.1.0 64bit (with gcc 4.9.3 on X86)

Known non-working combinations
    Pthreads backend (on Power 8)

Table 4.1: Configuration Macros

Macro Effect Comment
KOKKOS_ENABLE_CUDA Enable the CUDA execution space. Requires a compiler capable of understanding CUDA-C. See Section 4.4.
KOKKOS_ENABLE_OPENMP Enable the OpenMP execution space. Requires the compiler to support OpenMP (e.g., -fopenmp).
KOKKOS_ENABLE_PTHREADS Enable the Threads execution space. Requires linking with libpthread.
KOKKOS_ENABLE_Serial Enable the Serial execution space.
KOKKOS_ENABLE_CXX11 Enable internal usage of C++11 features. The code needs to be compiled with the C++11 standard. Most compilers accept the -std=c++11 flag for this.
KOKKOS_ENABLE_HWLOC Enable thread and memory pinning via hwloc. Requires linking with libhwloc.

4.2 Using Kokkos' Makefile system

The base of the build system is the file Makefile.kokkos; it is designed to be included by application Makefiles. It contains logic to (re)generate the KokkosCore_config.h file if necessary, build the Kokkos library, and provide updated compiler and linker flags.

The system can digest a number of variables which are used to configure Kokkos settings and then parses the variables for Keywords. This allows for multiple options to be given for each variable. The separator doesn't matter as long as it doesn't interact with the Make system. A list of variables, their meaning and options are given in Table 4.2.

A word of caution on where to include the Makefile.kokkos: since the embedded Makefiles define targets, it is usually better to include it after the first application target has been defined. Since that target can't use the flags from the embedded Makefiles, it should be a meta target:

CXX=g++
default: main
include Makefile.kokkos
main: $(KOKKOS_LINK_DEPENDS) $(KOKKOS_CPP_DEPENDS) main.cpp
      $(CXX) $(KOKKOS_CPPFLAGS) $(KOKKOS_CXXFLAGS) \
      $(KOKKOS_LDFLAGS) $(KOKKOS_LIBS) main.cpp -o main

More example application Makefiles can be found in the tutorial examples under kokkos/example/tutorial.

Kokkos provides a script generate_makefile.bash which can generate a Makefile for building and installing the library as well as building and running the tests. Please run generate_makefile.bash --help to see options. Note that paths given to the script must be absolute paths, and the script must be run with the bash shell (the script will do this if it is run directly, i.e., as ./generate_makefile.bash).

Table 4.2: Variables for the Embedded Makefile

Variable Description
KOKKOS_PATH (IN) Path to the Kokkos root or install directory. One can either build against an existing install of Kokkos or use its source directly for an embedded build. In the former case the "Input variables" are set inside the embedded Makefile.kokkos and it is not valid to set them differently in the including Makefile.
CUDA_PATH (IN) Path to the Cuda toolkit root directory.
KOKKOS_DEVICES (IN) Execution and Memory Spaces that should be enabled.
Options
Default
OpenMP, Serial, Pthreads, Cuda
OpenMP
KOKKOS_ARCH (IN) The backend architecture to build for.
Options


Default
KNL, KNC, SNB, HSW, BDW, Kepler, Kepler30, Kepler35, Kepler37, Maxwell, Maxwell50, Pascal60, Pascal61, ARMv8, ARMv81, ARMv8-ThunderX, BGQ, Power7, Power8

(no particular architecture flags are set).
KOKKOS_USE_TPLS (IN) Enable optional third party libraries.
Options
Default
hwloc, librt, experimental_memkind
(none)
KOKKOS_OPTIONS (IN) Enable optional settings
Options
Default
aggressive_vectorization
(none)
KOKKOS_CUDA_OPTIONS (IN) Enable optional settings specific to CUDA.
Options
Default
force_uvm, use_ldg, rdc, enable_lambda
(none)
HWLOC_PATH (IN) Path to the hardware locality library if enabled.
KOKKOS_DEBUG (IN) Enable debugging.
Options
Default
yes, no
no
KOKKOS_CXX_STANDARD (IN) Set the C++ standard to be used.
Options
Default
C++11
C++11
KOKKOS_CPPFLAGS (OUT) Preprocessor flags (include directories and defines). Add this to applications compiler and preprocessor flags.
KOKKOS_CXXFLAGS (OUT) Compiler flags. Add this to the applications compiler flags.
KOKKOS_LDFLAGS (OUT) Linker flags. Add this to the applications linker flags.
KOKKOS LIBS (OUT) Libraries required by Kokkos. Add this to the link line after the linker flags.
KOKKOS_CPP_DEPENDS (OUT) Dependencies for compilation units which include any Kokkos header files.
Add this as a dependency to compilation targets including any Kokkos code.
KOKKOS_LINK_DEPENDS (OUT) Dependencies of an application linking in the Kokkos library. Add this to the dependency list of link targets.
CXXFLAGS (IN) User provided compiler flags which will be used to compile the Kokkos library.
CXX (IN) The compiler used to compile the Kokkos library.

4.3 Using Trilinos' CMake build system

The Trilinos project (see trilinos.org) is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multiphysics engineering and scientific problems. Trilinos is organized into packages. Even though Kokkos is a stand-alone software project, Trilinos uses Kokkos extensively. Thus, Trilinos' source code includes Kokkos' source code, and builds Kokkos as part of its build process.

Trilinos' build system uses CMake. Thus, in order to build Kokkos as part of Trilinos, you must first install CMake (version 2.8.12 or newer; CMake 3.x works). To enable Kokkos when building Trilinos, set the CMake option Trilinos_ENABLE_Kokkos. Trilinos' build system lets packages express dependencies on other packages or external libraries. If you enable any Trilinos package (e.g., Tpetra) that has a required dependency on Kokkos, Trilinos will enable Kokkos automatically. Configuration macros are automatically inferred from Trilinos settings. For example, if the CMake option Trilinos_ENABLE_OpenMP is ON, Trilinos will define the macro KOKKOS_ENABLE_OPENMP. Trilinos' build system will autogenerate the previously mentioned KokkosCore_config.h file that contains those macros.

Trilinos' CMake build system utilizes Kokkos' build system to set compiler flags, compiler options, architectures, etc. CMake variables CMAKE_CXX_COMPILER, CMAKE_C_COMPILER, and CMAKE_FORTRAN_COMPILER are used to specify the compiler. To configure Trilinos for various archictures, with Kokkos enabled, the CMake variable KOKKOS_ARCH should be set to the appropriate architecture as specified in the Table 4.3.

Table 4.3: Architecture Variables

Variable Description
AMDAVX AMD CPU
ARMv80 ARMv8.0 Compatible CPU
ARMv81 ARMv8.1 Compatible CPU
ARMv8-ThunderX ARMv8 Cavium ThunderX CPU
BGQ IBM Blue Gene Q
Power7 IBM POWER7 and POWER7+ CPUs
Power8 IBM POWER8 CPUs
Power9 IBM POWER9 CPUs
WSM Intel Westmere CPUs
SNB Intel Sandy/Ivy Bridge CPUs
HSW Intel Haswell CPUs
BDW Intel Broadwell Xeon E-class CPUs
SKX Intel Sky Lake Xeon E-class HPC CPUs (AVX512)
KNC Intel Knights Corner Xeon Phi
KNL Intel Knights Landing Xeon Phi
Kepler30 NVIDIA Kepler generation CC 3.0
Kepler32 NVIDIA Kepler generation CC 3.2
Kepler35 NVIDIA Kepler generation CC 3.5
Kepler37 NVIDIA Kepler generation CC 3.7
Maxwell50 NVIDIA Maxwell generation CC 5.0
Maxwell52 NVIDIA Maxwell generation CC 5.2
Maxwell53 NVIDIA Maxwell generation CC 5.3
Pascal60 NVIDIA Pascal generation CC 6.0
Pascal61 NVIDIA Pascal generation CC 6.1
Volta70 NVIDIA Volta generation CC 7.0
Volta72 NVIDIA Volta generation CC 7.2

Multiple architectures can be specified by separting the architecture variables with a semi-colon, for example KOKKOS_ARCH:STRING="HSW;Kepler35 sets architecture variables for a machine with Intel Haswell CPUs and a NVIDIA Tesla K40 GPU. In addition, when setting the KOKKOS_ARCH variable it is not necessary to pass required architecture-specific flags to CMake, for example via the CMAKE_CXX_FLAGS variable.

Several Trilinos packages with CUDA support currently require the use of UVM (note UVM is enabled by default when configuring Trilinos with CUDA enabled, unless the user explictly disables it). To ensure proper compilation and execution for such packages, the environment variables export CUDA_LAUNCH_BLOCKING=1 and export CUDA_MANAGED_FORCE_DEVICE_ALLOC=1 must be set.

We refer readers to Trilinos' documentation for further details.

4.4 Building for CUDA

Any Kokkos application compiled for CUDA embeds CUDA code via template metaprogramming. Thus, the whole application must be built with a CUDA-capable compiler. (At the moment, the only such compilers are NVIDIA's NVCC and Clang 4.0.) More precisely, every compilation unit containing a Kokkos kernel or a function called from a Kokkos kernel has to be compiled with a CUDA-capable compiler. This includes files containing Kokkos::View allocations which call an initialization kernel.

All current versions of the NVCC compiler have shortcomings when used as the main compiler for a project, in particular when part of a complex build system. For example, it does not understand most GCC command-line options, which must be prepended by the -Xcompiler flag when calling NVCC. Kokkos comes with a shell script, called nvcc_wrapper, that wraps NVCC to address these issues. We intend this as a drop-in replacement for a normal GCC-compatible compiler (e.g., GCC or Intel) in your build system. It analyzes the provided command-line options and prepends them correctly. It also adds the correct flags for compiling generic C++ files containing CUDA code (e.g., *.cpp, *.cxx, or *.CC). By default nvcc_wrapper calls g++ as the host compiler. You may override this by providing NVCC's -ccbin option as a compiler flag. The default can be set by editing the script itself or by setting the environment variable NVCC_WRAPPER_DEFAULT_COMPILER.

Many people use a system like Environment Modules (see http://modules.sourceforge.net/) to manage their shell environment. When using a module system, it can be useful to provide different versions for different back-end compiler types (e.g., icpc, pgc++, g++, and clang). To use the nvcc_wrapper in conjunction with MPI wrappers, simply overwrite which C++ compiler is called by the MPI wrapper. For example, you can reset OpenMPI's C++ compiler by setting the OMPI_CXX environment variable. Make sure that nvcc_wrapper calls the host compiler with which the MPI library was compiled.

4.5 Execution Space Restrictions

Currently, Kokkos organizes its execution spaces into three categories:

  • Host Serial: A top-level Serial execution space with no parallelism or concurrency
  • Host Parallel: Typically a threading model for CPUs, currently: OpenMP, Threads, and QThreads.
  • Device Parallel: Typically an attached GPU, currently: CUDA, OpenMPTarget, and ROCm.

The current Kokkos policy is to allow users, at compile time, to enable at most one execution space from each category. This prevents incompatibilities between different spaces in the same category from degrading the user's correctness and performance.

Chapter 5: Initialization

Clone this wiki locally
You can’t perform that action at this time.