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Temporal Pathway Synthesizer
Temporal Pathway Visualizer
Single-cell data analysis
DSL in Scala for Constraint Solving with Z3 SMT Solver
Experimental prototype code for "Synthesis of Biological Models from Mutation Experiments" in POPL 2013 (http://koksal.org/papers/KoksalETAL13SynthesisBiologicalModels.pdf)
Scala wrapper for FunChisq
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