/karme

Single-cell data analysis
  1. Scala 96.6%
  2. Shell 3.1%
  3. R 0.3%
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README.md

karme Circle CI

Ongoing project on inferring executable models from single-cell data.

Requirements

  1. Install the Java Development Kit 8.
  2. Install sbt and make sure the sbt binary is in your path.
  3. Build ScalaZ3, and put the packaged jar in lib.
  4. Install R and execute ./scripts/setup-r-packages.R to install required R libraries.

Running

See ./scripts/run-t-cell-default-args.sh for an example invocation of the tool.