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Rework licenses to GPL-3.

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1 parent 05c333b commit 4a7455ed3f876aa7bd516ceb588eefffbd922f0c @gaborcsardi gaborcsardi committed Apr 24, 2014
Showing with 9 additions and 166 deletions.
  1. +2 −2 sand/DESCRIPTION
  2. +0 −116 sand/LICENSE
  3. +0 −6 sand/man/Ecoli.Rd
  4. +1 −4 sand/man/aidsblog.Rd
  5. +1 −6 sand/man/calldata.Rd
  6. +1 −4 sand/man/fblog.Rd
  7. +0 −4 sand/man/g.bip.Rd
  8. +1 −6 sand/man/hc.Rd
  9. +0 −5 sand/man/lazega.Rd
  10. +2 −7 sand/man/ppi.CC.Rd
  11. +1 −6 sand/man/sandwichprobe.Rd
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@@ -1,5 +1,5 @@
Package: sand
-Version: 1.0.1
+Version: 1.0.2
Date: 2014-04-23
Title: Statistical Analysis of Network Data with R
Author: Eric D Kolaczyk, Gabor Csardi
@@ -11,7 +11,7 @@ Suggests: GO.db, GOstats, ROCR, ape, car, eigenmodel, ergm,
sna, vioplot
Description: Data sets for the book 'Statistical Analysis of
Network Data with R'.
-License: file LICENSE
+License: GPL-3
URL: https://github.com/kolaczyk/sand
BugReports: https://github.com/kolaczyk/sand/issues
LazyData: true
View
@@ -1,116 +0,0 @@
-The source code in the `sand' package is licensed under the MIT license.
-See http://opensource.org/licenses/MIT for details.
-
-The individual data sets have their own licenses:
-
-Ecoli
------
-
-This dataset is licensed under a Creative Commons Attribution (CC BY)
-license, see http://www.plosbiology.org/static/license and
-http://creativecommons.org/licenses/by/3.0/ for details.
-
-Please cite the following reference if you use this dataset in your work:
-
-J. Faith, B. Hayete, J. Thaden, I. Mogno, J. Wierzbowski, G. Cottarel,
-S. Kasif, J. Collins, T. Gardner: Large-scale mapping and
-validation of Escherichia coli transcriptional regulation from a
-compendium of expression profiles. PLoS Biol. 5(1), e8 (2007).
-
-fblog
------
-
-This dataset was taken from the `mixer' R package, and licensed under
-the GNU GPL (>=2) license.
-
-ppi.CC
-------
-
-This dataset is licensed under a Creative Commons Attribution-Share
-Alike (CC BY-SA) license, see
-http://creativecommons.org/licenses/by-sa/3.0/ for details.
-
-Please cite the following reference if you use this dataset in your work:
-
-X. Jiang, N. Nariai, M. Steffen, S. Kasif, E. Kolaczyk: Integration of
-relational and hierarchical network information for protein
-function prediction. BMC Bioinform. 9, 350 (2008).
-
-aidsblog
---------
-
-This dataset was provided to us by Suchi Gopal. It is included in
-`sand' under the Creative Commons Attribution-Share
-Alike (CC BY-SA) license, see
-http://creativecommons.org/licenses/by-sa/3.0/ for details.
-
-Please cite the following reference if you use this dataset in your work:
-
-S. Gopal, The evolving social geography of blogs. In Societies and
-Cities in the Age of Instant Access, ed. by H. Miller (Springer,
-Berlin, 2007), 139 pp. 275-294.
-
-g.bip
------
-
-This toy network was created by the package authors and its use is
-Unlimited.
-
-sandwichprobe
--------------
-
-This dataset was provided to us by Mark Coates. It is included in
-`sand' under the Creative Commons Attribution-Share
-Alike (CC BY-SA) license, see
-http://creativecommons.org/licenses/by-sa/3.0/ for details.
-
-Please cite the following reference if you use this dataset in your work:
-
-M. Coates, R. Castro, R. Nowak, M. Gadhiok, R. King, Y. Tsang, Maximum
-likelihood network topology identification from edge-based unicast
-measurements. Proceedings of the 2002 ACM SIGMETRICS International
-Conference on Measurement and Modeling of Computer Systems, 2002,
-pp. 11-20.
-
-calldata
---------
-
-This dataset was provided to us by Suchi Gopal. It is included in
-`sand' under the Creative Commons Attribution-Share
-Alike (CC BY-SA) license, see
-http://creativecommons.org/licenses/by-sa/3.0/ for details.
-
-Please cite the following reference if you use this dataset in your work:
-
-M. Fischer, S. Gopal: Artificial neural networks: a new approach to
-modeling interregional telecommunication flows. J. Reg. Sci. 34(4),
-503-527 (1994).
-
-hc
---
-
-This dataset is licensed under a Creative Commons Attribution (CC BY)
-license, see http://www.plosone.org/static/license and
-http://creativecommons.org/licenses/by/3.0/ for details. It was
-provided to us by Alain Barrat.
-
-Please cite the following reference if you use this dataset in your work:
-
-P. Vanhems, A. Barrat, C. Cattuto, J.-F. Pinton, N. Khanafer,
-C. Regis, B.-a. Kim, B. Comte, N. Voirin: Estimating potential
-infection transmission routes in hospital wards using wearable
-proximity sensors. PloS One 8(9), e73970 306 (2013).
-
-lazega, v.attr.lazega, elist.lazega
------------------------------------
-
-This dataset was provided to us by Emmanuel Lazega. It is included in
-`sand' under the Creative Commons Attribution-Share
-Alike (CC BY-SA) license, see
-http://creativecommons.org/licenses/by-sa/3.0/ for details.
-
-Please cite the following reference if you use this dataset in your work:
-
-E. Lazega, The Collegial Phenomenon: The Social Mechanisms of
-Cooperation Among Peers in a Corporate Law Partnership. Oxford
-University Press, Oxford (2001).
View
@@ -32,12 +32,6 @@ regDB.adj
See the reference below. Please cite it if you use this dataset in
your work.
}
-\note{
- This dataset is licensed under a Creative Commons Attribution (CC BY)
- license, see \url{http://www.plosbiology.org/static/license} and
- \url{http://creativecommons.org/licenses/by/3.0/} for details.
- Please cite the reference below if you use this dataset in your work.
-}
\references{
J. Faith, B. Hayete, J. Thaden, I. Mogno, J. Wierzbowski, G. Cottarel,
S. Kasif, J. Collins, T. Gardner: Large-scale mapping and
@@ -17,10 +17,7 @@ aidsblog
A directed igraph graph object with 146 vertices and 187 edges.
}
\source{
- This dataset was provided to us by Suchi Gopal. It is included in
- \sQuote{sand} under the Creative Commons Attribution-Share
- Alike (CC BY-SA) license, see
- \url{http://creativecommons.org/licenses/by-sa/3.0/} for details.
+ This dataset was provided to us by Suchi Gopal.
Please cite the reference below if you use this dataset in your work.
}
\references{
@@ -27,14 +27,9 @@ calldata
of the call divided by the duration of the measurement period).
}
}
-\note{
- This dataset is included in \sQuote{sand} under the Creative Commons
- Attribution-Share Alike (CC BY-SA) license, see
- \url{http://creativecommons.org/licenses/by-sa/3.0/} for details.
- Please cite the reference below if you use this dataset in your work.
-}
\source{
This dataset was provided to us by Suchi Gopal.
+ Please cite the reference below if you use this dataset in your work.
}
\references{
M. Fischer, S. Gopal: Artificial neural networks: a new approach to
View
@@ -16,11 +16,8 @@ fblog
\sQuote{name} is the URL of the blog, and \sQuote{PolParty} is the
assigned political affiliation, a political party.
}
-\note{
- This dataset is licensed under the GNU GPL (>=2) license.
-}
\source{
- The \code{mixer} R package, and
+ The \code{mixer} R package, see also
\url{http://observatoire-presidentielle.fr/}.
}
% \references{}
View
@@ -11,10 +11,6 @@ g.bip
An undirected bipartite igraph graph object, with vertex attributes
\sQuote{name} and \sQuote{type}.
}
-\note{
- This toy network was created by the package authors and its use is
- Unlimited.
-}
% \source{}
% \references{}
\keyword{datasets}
View
@@ -29,14 +29,9 @@ hc
paramedical staff, such as nurses or nurses' aides (NUR), and
patients (PAT).
}
-\note{
- This dataset is licensed under a Creative Commons Attribution (CC BY)
- license, see \url{http://www.plosone.org/static/license} and
- \url{http://creativecommons.org/licenses/by/3.0/} for details.
- Please cite the reference below. if you use this dataset in your work:
-}
\source{
See the reference below.
+ Please cite the it if you use this dataset in your work.
}
\references{
P. Vanhems, A. Barrat, C. Cattuto, J.-F. Pinton, N. Khanafer,
View
@@ -39,11 +39,6 @@ v.attr.lazega
\code{v.attr.lazega} is a data frame containing the vertex attributes
only.
}
-\note{
- This data set is included in \sQuote{sand} under the Creative Commons
- Attribution-Share Alike (CC BY-SA) license, see
- \url{http://creativecommons.org/licenses/by-sa/3.0/} for details.
-}
\source{
Provided to us by Emmanuel Lazega. Please cite the
reference below if you use this dataset in your work.
View
@@ -32,14 +32,9 @@ ppi.CC
(IPR003527) motif.
}
}
-\note{
- This dataset is licensed under a Creative Commons Attribution-Share
- Alike (CC BY-SA) license, see
- \url{http://creativecommons.org/licenses/by-sa/3.0/} for details.
- Please cite the reference below if you use this dataset in your work.
-}
\source{
- See the reference below.
+ See the reference below. Please cite it if you use this dataset in
+ your work.
}
\references{
X. Jiang, N. Nariai, M. Steffen, S. Kasif, E. Kolaczyk: Integration of
@@ -36,14 +36,9 @@ host.locs
\item \sQuote{RiceU2} Rice University (Host 2)
}
}
-\note{
- This dataset is included in \sQuote{sand} under the Creative Commons
- Attribution-Share Alike (CC BY-SA) license, see
- \url{http://creativecommons.org/licenses/by-sa/3.0/} for details.
- Please cite the reference below if you use this dataset in your work.
-}
\source{
Provided by Mark Coates, see reference below.
+ Please cite the reference below if you use this dataset in your work.
}
\references{
M. Coates, R. Castro, R. Nowak, M. Gadhiok, R. King, Y. Tsang, Maximum

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