Scripts for the Webinar "RNA-Seq analysis with READemption - Setup and usage in the EGI Federated Cloud"
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README.md
create_vm.sh
get_rna_seq_data_from_geo.sh
run_reademption_analysis.sh
setup_system_on_egi_vm.sh

README.md

RNA-Seq analysis with READemption - Setup and usage in the EGI Federated Cloud

This is a collection of scripts used during the EGI webinar "RNA-Seq analysis with READemption - Setup and usage in the EGI Federated Cloud" given at November, 27th, 2014 by Konrad Förstner.

  • create_vm.sh: Creates the virtual machine
  • setup_system_on_egi_vm.sh: Installs required software on the virtual machine
  • get_rna_seq_data_from_geo.sh: Retrieves and pre-processes the RNA-Seq data
  • run_reademption_analysis.sh: Performs the actual analysis using READemption