RNA-Seq analysis with READemption - Setup and usage in the EGI Federated Cloud
This is a collection of scripts used during the EGI webinar "RNA-Seq analysis with READemption - Setup and usage in the EGI Federated Cloud" given at November, 27th, 2014 by Konrad Förstner.
create_vm.sh: Creates the virtual machine
setup_system_on_egi_vm.sh: Installs required software on the virtual machine
get_rna_seq_data_from_geo.sh: Retrieves and pre-processes the RNA-Seq data
run_reademption_analysis.sh: Performs the actual analysis using READemption