{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":573677974,"defaultBranch":"main","name":"neuromorphopy","ownerLogin":"kpeez","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-12-03T04:22:19.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/25070796?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1722106179.0","currentOid":""},"activityList":{"items":[{"before":"e5f8864f79334bfcd0ad0f9899fcd5c4f921f8dd","after":null,"ref":"refs/heads/feat/speedup","pushedAt":"2024-07-27T18:49:39.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"}},{"before":"9d091a2cfb07caa64edaf2aa41af660e29462578","after":"4f141c02d861b24699d5d0973d4aef1ec9875ba5","ref":"refs/heads/main","pushedAt":"2024-07-27T18:49:36.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"speed up swc downloading with parallel queries (#6)\n\n* refactor get_neuron_swc to process SWC data more efficiently\r\n\r\n* version updates\r\n\r\n* Refactor SWC module and add type hints\r\n\r\n* add parallel processing for downloading swc files\r\n\r\n* fix: save files in correct SWC format\r\n\r\nAll non-commented columns must be nodes in the neuron reconstruction. This function was saving the columns as the first row using pd.to_csv. However, this adds the column names as the first row uncommented which is incompatible with SWC specs. This commit creates the swc and prepends the column labels as a comment.\r\n\r\n* use uv.lock file\r\n\r\n* replace poetry with uv\r\n\r\n* add requirements.txt\r\n\r\n* update versions\r\n\r\n* update recipes to use uv run\r\n\r\n* change theme\r\n\r\n* update deps","shortMessageHtmlLink":"speed up swc downloading with parallel queries (#6)"}},{"before":"c343971a9e3ff2d36eae293690afca3a73caddfd","after":"e5f8864f79334bfcd0ad0f9899fcd5c4f921f8dd","ref":"refs/heads/feat/speedup","pushedAt":"2024-07-27T18:42:10.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"update deps","shortMessageHtmlLink":"update deps"}},{"before":"bbdce814b6cd550c0f782a9f9853253d3723abf0","after":"c343971a9e3ff2d36eae293690afca3a73caddfd","ref":"refs/heads/feat/speedup","pushedAt":"2024-07-26T22:32:34.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"add requirements.txt","shortMessageHtmlLink":"add requirements.txt"}},{"before":"b4f7827752cc84df56ac4211962a966a1223d23e","after":"bbdce814b6cd550c0f782a9f9853253d3723abf0","ref":"refs/heads/feat/speedup","pushedAt":"2024-02-08T03:04:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"fix: save files in correct SWC format\n\nAll non-commented columns must be nodes in the neuron reconstruction. This function was saving the columns as the first row using pd.to_csv. However, this adds the column names as the first row uncommented which is incompatible with SWC specs. This commit creates the swc and prepends the column labels as a comment.","shortMessageHtmlLink":"fix: save files in correct SWC format"}},{"before":null,"after":"b4f7827752cc84df56ac4211962a966a1223d23e","ref":"refs/heads/feat/speedup","pushedAt":"2024-01-24T04:37:55.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"add parallel processing for downloading swc files","shortMessageHtmlLink":"add parallel processing for downloading swc files"}},{"before":"8939cf1a605e3c3add8865113ba66a468a72b754","after":"9d091a2cfb07caa64edaf2aa41af660e29462578","ref":"refs/heads/main","pushedAt":"2023-04-02T17:30:28.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"add query as attribute","shortMessageHtmlLink":"add query as attribute"}},{"before":"8c45eb70f0e52cf1d39d0eccfe1963d40468964a","after":"8939cf1a605e3c3add8865113ba66a468a72b754","ref":"refs/heads/main","pushedAt":"2023-04-01T20:02:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"fix error handling for bad swc files","shortMessageHtmlLink":"fix error handling for bad swc files"}},{"before":"b6249d3de797813383651c904da54623f7157d24","after":"8c45eb70f0e52cf1d39d0eccfe1963d40468964a","ref":"refs/heads/main","pushedAt":"2023-04-01T17:41:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"remove ascii=False from tqdm bars","shortMessageHtmlLink":"remove ascii=False from tqdm bars"}},{"before":"395040ed6a232b735d458cf8e6c8dbeedf8b1100","after":"b6249d3de797813383651c904da54623f7157d24","ref":"refs/heads/main","pushedAt":"2023-04-01T17:31:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"update progress bars","shortMessageHtmlLink":"update progress bars"}},{"before":"143dbcad941606474675edb68f9477ee6b8d091f","after":"395040ed6a232b735d458cf8e6c8dbeedf8b1100","ref":"refs/heads/main","pushedAt":"2023-03-31T23:59:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"update for new swc download method","shortMessageHtmlLink":"update for new swc download method"}},{"before":"6c2f92cb1e9733d8f6f59901e649aa6c83a04984","after":null,"ref":"refs/heads/dev-kp","pushedAt":"2023-03-31T23:56:03.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"}},{"before":"06307f21b1e1a0ef72e4366d1e4dc6db139e146a","after":null,"ref":"refs/heads/write_swc","pushedAt":"2023-03-31T23:55:53.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"}},{"before":"53e13ab3202692d5d36e18c124dfe3608a1ad1f5","after":"143dbcad941606474675edb68f9477ee6b8d091f","ref":"refs/heads/main","pushedAt":"2023-03-31T23:55:17.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"Merge pull request #4 from kpeez/write_swc\n\nwrite neurons to individual swc files instead of pickling","shortMessageHtmlLink":"Merge pull request #4 from kpeez/write_swc"}},{"before":null,"after":"06307f21b1e1a0ef72e4366d1e4dc6db139e146a","ref":"refs/heads/write_swc","pushedAt":"2023-03-31T23:54:52.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"write neurons to individual swc files instead of pickling","shortMessageHtmlLink":"write neurons to individual swc files instead of pickling"}},{"before":"84bacde3fb34c9c046112ef22b6bbf22ece4ee7d","after":"53e13ab3202692d5d36e18c124dfe3608a1ad1f5","ref":"refs/heads/main","pushedAt":"2023-03-31T22:29:49.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"add tqdm progress bar for swc data download","shortMessageHtmlLink":"add tqdm progress bar for swc data download"}},{"before":"6d2aa8ddba0d8a465792d933aaa0e28570a94a40","after":"84bacde3fb34c9c046112ef22b6bbf22ece4ee7d","ref":"refs/heads/main","pushedAt":"2023-03-22T00:18:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"add image_url functions","shortMessageHtmlLink":"add image_url functions"}},{"before":"4c8906d9a43d9fe8c3215962a3487fbcffe6c5d8","after":"6d2aa8ddba0d8a465792d933aaa0e28570a94a40","ref":"refs/heads/main","pushedAt":"2023-03-21T22:17:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"kpeez","name":"Kyle Puhger","path":"/kpeez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25070796?s=80&v=4"},"commit":{"message":"version bump","shortMessageHtmlLink":"version bump"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEitaT1wA","startCursor":null,"endCursor":null}},"title":"Activity ยท kpeez/neuromorphopy"}