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Overview of code:
https://github.com/krm15/ACME/wiki
Instructions for compiling and running code:
https://wiki.med.harvard.edu/pub/SysBio/Megason/ACME/SupplementaryInformation.pdf
Precompiled binaries and sample data:
https://wiki.med.harvard.edu/pub/SysBio/Megason/ACME/