param: experiment with XAJ mode for 191

ktmeaton · Oct 26, 2022 · 800c1e9 · 800c1e9
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commit 800c1e9
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/defaults/parameters.yaml b/defaults/parameters.yaml
@@ -72,7 +72,7 @@ rule_params:
       - XB:              "--clades B.1.631 B.1.634             --ansi --parents 2   --breakpoints 1-10 --unique 5 --max-ambiguous 20 --max-intermission-length 2 --max-intermission-count 20 --ignore-shared --mutation-threshold 0.25"
       - XC:              "--clades 20I 21J 21I                 --ansi --parents 2-3 --breakpoints 0-10 --unique 5 --max-ambiguous 20 --max-intermission-length 2 --max-intermission-count 3  --ignore-shared --mutation-threshold 0.25"
       - proposed808:     "--clades 21K B.1.438.1               --ansi --parents 2   --breakpoints 1-10 --unique 3 --max-ambiguous 20 --max-intermission-length 2 --max-intermission-count 3  --ignore-shared --mutation-threshold 0.25"
-      - XAJ:             "--clades BA.4 BA.2.12                --ansi --parents 2   --breakpoints 0-10 --unique 1 --max-ambiguous 20 --max-intermission-length 2 --max-intermission-count 3  --ignore-shared --mutation-threshold 0.25"
+      - XAJ:             "--clades BA.4 BA.2.12                --ansi --parents 2   --breakpoints 2    --unique 2 --max-ambiguous 20 --max-intermission-length 2 --max-intermission-count 3  --ignore-shared --mutation-threshold 0.25"
       - XAY:             "--clades 21I 21J BA.1 BA.2           --ansi --parents 2-4 --breakpoints 2-10 --unique 3 --max-ambiguous 20 --max-intermission-length 2 --max-intermission-count 20 --ignore-shared --mutation-threshold 0.25"
       - XBB:             "--clades BA.2.10 BA.2.75             --ansi --parents 2   --breakpoints 1-10 --unique 1 --max-ambiguous 20 --max-intermission-length 2 --max-intermission-count 3  --ignore-shared --mutation-threshold 0.25"
       - XBD:             "--clades BA.2.12 BA.2.75 BA.4 BA.5   --ansi --parents 2   --breakpoints 1-5  --unique 3 --max-ambiguous 20 --max-intermission-length 2 --max-intermission-count 3  --ignore-shared --mutation-threshold 0.25"

diff --git a/defaults/validation.tsv b/defaults/validation.tsv
@@ -594,7 +594,7 @@ hCoV-19/Turkey/HSGM-GS8186/2022	BA.2.75.2	NA	Omicron/BA.2/21L	controls-gisaid
 hCoV-19/India/WB-INSACOG-1932000426862/2022	BA.2.75.3	NA	Omicron/BA.2/21L	controls-gisaid
 hCoV-19/Singapore/10557/2022	BA.2.75.4	NA	Omicron/BA.2/21L	controls-gisaid
 hCoV-19/USA/NY-PRL-220808_00J20/2022	BA.4	NA	Omicron/BA.4/22A	controls-gisaid
-hCoV-19/India/WB-INSACOG-1932000427754/2022	BM.2	NA	Omicron/BA.2.12/22C	controls-gisaid
+hCoV-19/India/WB-INSACOG-1932000427754/2022	BM.2	NA	Omicron/BA.2/21L	controls-gisaid
 hCoV-19/Thailand/Bangkok-CONI-0226/2020	A	NA	NA	controls-gisaid
 hCoV-19/Spain/MD-IBV-005359/2020	A.2	NA	NA	controls-gisaid
 hCoV-19/Canada/QC-L00348132001A/2021	A.2.5.2	NA	NA	controls-gisaid