From a267cbe5cc569870099502ff7ea52ce3a81dd05b Mon Sep 17 00:00:00 2001
From: Av Shrikumar <avanti.shrikumar@gmail.com>
Date: Mon, 27 Apr 2020 13:25:09 -0700
Subject: [PATCH] fixes for python 2

---
 .travis.yml                     | 2 ++
 modisco.egg-info/PKG-INFO       | 2 +-
 modisco.egg-info/requires.txt   | 2 +-
 modisco/clusterinit/memeinit.py | 3 ++-
 setup.py                        | 2 +-
 5 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/.travis.yml b/.travis.yml
index 35591c6..f88b8a6 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -40,6 +40,8 @@ install:
   - pip install tqdm
   - pip install psutil
   - pip install matplotlib
+  #Set the 'Agg' backend to prevent a TclError with python 2
+  - echo "backend: Agg" > ~/.config/matplotlib/matplotlibrc
   ##MEME installation
   - wget http://alternate.meme-suite.org/meme-software/5.1.1/meme-5.1.1.tar.gz
   - tar zxf meme-5.1.1.tar.gz
diff --git a/modisco.egg-info/PKG-INFO b/modisco.egg-info/PKG-INFO
index 6f22737..3d83496 100644
--- a/modisco.egg-info/PKG-INFO
+++ b/modisco.egg-info/PKG-INFO
@@ -6,5 +6,5 @@ Home-page: https://github.com/kundajelab/tfmodisco
 License: UNKNOWN
 Description: Algorithm for discovering consolidated patterns from base-pair-level importance scores
 Platform: UNKNOWN
-Provides-Extra: tensorflow
 Provides-Extra: tensorflow with gpu
+Provides-Extra: tensorflow
diff --git a/modisco.egg-info/requires.txt b/modisco.egg-info/requires.txt
index ceba382..9f2ea3b 100644
--- a/modisco.egg-info/requires.txt
+++ b/modisco.egg-info/requires.txt
@@ -5,7 +5,7 @@ h5py>=2.5
 leidenalg>=0.7.0
 tqdm>=4.38.0
 psutil>=5.4.8
-matplotlib>=3.1.1
+matplotlib>=2.2.5
 
 [tensorflow]
 tensorflow>=1.7
diff --git a/modisco/clusterinit/memeinit.py b/modisco/clusterinit/memeinit.py
index 65db4b9..1b3dcfe 100644
--- a/modisco/clusterinit/memeinit.py
+++ b/modisco/clusterinit/memeinit.py
@@ -66,7 +66,8 @@ def __call__(self, seqlets):
 
         outdir = self.base_outdir+"/metacluster"+str(self.call_count)
         self.call_count += 1
-        os.makedirs(outdir, exist_ok=True)
+        if (os.path.exists(outdir)==False):
+            os.makedirs(outdir)
 
         seqlet_fa_to_write = outdir+"/inp_seqlets.fa"
         seqlet_fa_fh = open(seqlet_fa_to_write, 'w') 
diff --git a/setup.py b/setup.py
index f5d1801..c2782d0 100644
--- a/setup.py
+++ b/setup.py
@@ -17,7 +17,7 @@
                             'scikit-learn>=0.19',
                             'h5py>=2.5', 'leidenalg>=0.7.0',
                             'tqdm>=4.38.0', 'psutil>=5.4.8',
-                            'matplotlib>=3.1.1'],
+                            'matplotlib>=2.2.5'],
           extras_require={
             'tensorflow': ['tensorflow>=1.7'],
             'tensorflow with gpu': ['tensorflow-gpu>=1.7']},