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feat(filetree): structured entries in DirectoryReply (#3425)
Benefits include not forcing clients of the API to understand the Kythe ticket format for files/directories and allowing for extensions (e.g. build configurations) to each directory entry by making it its own message. This change includes the proposed DirectoryReply fields, deprecates the existing subdirectory/file fields, and updates all known implementers of the filetree.Interface. Later changes will update clients of the API.
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