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Collected small changes and bugfixes for the next patch release #1282

Merged
merged 21 commits into from Jan 31, 2019
Merged

Collected small changes and bugfixes for the next patch release #1282

merged 21 commits into from Jan 31, 2019

Commits on Jan 10, 2019

  1. if we want to check for C++ includes, we should now check for cmath n… 

    …ot math.h
    @akohlmey
    akohlmey committed Jan 10, 2019
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  2. add option to print_var_error() function to delegate errors to erro… 

    …r->one() instead of error->all()

this change is applied to cases that may happen on individual ranks only, e.g. out-of-range access, division by zero, invalid argument.
    @akohlmey
    akohlmey committed Jan 10, 2019
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  3. use per-target unique temporary name to avoid corruption when creatin… 

    …g lmpinstalledpkgs.h from concurrent builds
    @akohlmey
    akohlmey committed Jan 10, 2019
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  4. fix 2 bugs in fix bond/react 

    - correct logic when deleting internal fix
- remove line attempting to dele a callback to Atom(), that was never added
    @akohlmey
    akohlmey committed Jan 10, 2019
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  5. detect when something tries to delete a callback that was never added

    @akohlmey
    akohlmey committed Jan 10, 2019
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  6. fix memory leak in fix bond/react

    @akohlmey
    akohlmey committed Jan 10, 2019
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Commits on Jan 11, 2019

  1. correct local/aligned storage issue in airebo/intel macros for vecori… 

    …zation
    @akohlmey
    akohlmey committed Jan 11, 2019
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Commits on Jan 21, 2019

  1. fix bug reported in lammps#1294

    @akohlmey
    akohlmey committed Jan 21, 2019
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Commits on Jan 24, 2019

  1. permission update for some bundled PDF files

    @akohlmey
    akohlmey committed Jan 24, 2019
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  2. another permission fix

    @akohlmey
    akohlmey committed Jan 24, 2019
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  3. correctly spell "through"

    @akohlmey
    akohlmey committed Jan 24, 2019
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  4. fix cut-n-paste bug in extract_setting() method

    @akohlmey
    akohlmey committed Jan 24, 2019
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Commits on Jan 26, 2019

  1. fix typo

    @akohlmey
    akohlmey committed Jan 26, 2019
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  2. fix issue in USER-PLUMED due to incorrectly copying strings

    @akohlmey
    akohlmey committed Jan 26, 2019
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Commits on Jan 30, 2019

  1. add overlooked entry to Purge.list

    @akohlmey
    akohlmey committed Jan 30, 2019
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Commits on Jan 31, 2019

  1. update development workflow description to state of latest discussions

    @akohlmey
    akohlmey committed Jan 31, 2019
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  2. fix storage size for internal compute ids in fix plumed

    @akohlmey
    akohlmey committed Jan 31, 2019
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  3. Merge branch 'master' into collected-small-changes

    @akohlmey
    akohlmey committed Jan 31, 2019
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  4. bugfix for create_atoms region optimization

    @akohlmey
    akohlmey committed Jan 31, 2019
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  5. must convert regions bounding box to lattice coordinates before check… 

    …ing to reduce lattice creation range
    @akohlmey
    akohlmey committed Jan 31, 2019
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  6. output bounding box info for regions, if present

    @akohlmey
    akohlmey committed Jan 31, 2019
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