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#ifndef _HEADER_HPP_
#define _HEADER_HPP_
#include <string>
#include <iostream>
extern double aminoAcidMass[128];
typedef struct {
int numEntries;
int firstEntry;
} DensityStruct;
void printProteins();
void printPeptide();
void printSetOfAllPeptides();
int badChar(char c);
void checkForSpecialChar(char c, int &numPTS, int &numM);
int endPeptide( char c, char next);
double massOfPep( std::string seq );
int goodSequence( std::string seq );
int goodProteinSequence( std::string protSeq );
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